Query psy17475
Match_columns 346
No_of_seqs 332 out of 1388
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 23:28:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17475.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17475hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_s 60S acidic ribosomal pr 100.0 4.1E-83 1.4E-87 617.7 18.4 264 1-264 20-287 (319)
2 3u5i_q A0, L10E, 60S acidic ri 100.0 4.1E-83 1.4E-87 616.0 9.2 264 1-264 17-282 (312)
3 2zkr_g 60S acidic ribosomal pr 100.0 6.1E-81 2.1E-85 602.1 -2.2 258 1-258 19-278 (317)
4 3j21_k Acidic ribosomal protei 100.0 3.9E-73 1.3E-77 552.9 14.6 241 1-241 17-263 (339)
5 1vq8_G Acidic ribosomal protei 100.0 2E-69 6.9E-74 526.7 0.1 244 2-250 26-272 (348)
6 3a1y_G Acidic ribosomal protei 100.0 2E-66 6.9E-71 495.4 14.9 248 1-250 17-270 (284)
7 3jsy_A Acidic ribosomal protei 100.0 3.9E-61 1.3E-65 441.4 10.7 194 1-194 14-212 (213)
8 3jsy_A Acidic ribosomal protei 99.8 1.2E-22 4.2E-27 185.9 -0.4 76 269-344 138-213 (213)
9 3u5i_q A0, L10E, 60S acidic ri 99.8 3.7E-22 1.3E-26 192.0 1.8 77 269-345 138-214 (312)
10 3iz5_s 60S acidic ribosomal pr 99.8 6.4E-22 2.2E-26 190.9 2.3 77 269-345 143-219 (319)
11 3j21_k Acidic ribosomal protei 99.8 1.4E-21 5E-26 190.0 2.3 77 270-346 143-219 (339)
12 2zkr_g 60S acidic ribosomal pr 99.8 1.1E-21 3.8E-26 189.1 0.0 78 269-346 140-217 (317)
13 1vq8_G Acidic ribosomal protei 99.8 4.7E-21 1.6E-25 186.6 0.0 78 269-346 144-221 (348)
14 2j01_J 50S ribosomal protein L 99.7 2.5E-17 8.7E-22 146.0 7.9 95 1-109 15-111 (173)
15 1zav_A 50S ribosomal protein L 99.7 3E-17 1E-21 146.4 7.7 83 2-89 18-105 (180)
16 3a1y_G Acidic ribosomal protei 99.6 1.4E-17 4.8E-22 158.4 1.0 77 269-345 142-218 (284)
17 3sgf_H 50S ribosomal protein L 99.6 5.9E-17 2E-21 142.7 -4.9 83 2-89 18-101 (165)
No 1
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=100.00 E-value=4.1e-83 Score=617.73 Aligned_cols=264 Identities=55% Similarity=0.903 Sum_probs=233.9
Q ss_pred CccCCCCeEEEEEecCCCcHHHHHHHHHhhCCcEEEEEehHHHHHHHhccccC--CCCcccccCcccCCeEEEEecCCHH
Q psy17475 1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEH--NPGLERLLPHIKGNVGFVFTRGDLN 78 (346)
Q Consensus 1 ~~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~~~~~vgKNtLmr~AL~~~~~~--~~~l~~L~~~l~G~~gliFTn~dp~ 78 (346)
+++++|+++||++++||+++|+|+||+.||+.++++||||||||+||+++.++ ++++++|.++|+||+||+|||+||.
T Consensus 20 e~l~~y~~v~vv~~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~e~~~~~~le~L~~~L~G~~gl~FT~~dp~ 99 (319)
T 3iz5_s 20 QLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLK 99 (319)
T ss_dssp HHHHHCSEEEEEECTTSCHHHHHHHHHHHHHHSCEECCSTTTCCHHHHHHHSSSCCSSSSSSSCCCCTTEEEEEESSCHH
T ss_pred HHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCcEEEEEhHHHHHHHHhhchhhhccccHHHHHHHhcCCeEEEEECCChH
Confidence 36789999999999999999999999999987899999999999999998654 4789999999999999999999999
Q ss_pred HHHHHHHhccccccccCCCCCCCcEEEcCCCCCCCCCchhhhhhcCCceEEecceEEEeeceeEeecCCc--hhHhHHHH
Q psy17475 79 EVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKEGDS--SREATLLN 156 (346)
Q Consensus 79 ev~k~l~~~k~~~~Ar~G~iA~~dVvip~G~t~~~P~~~s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~--~~~A~LL~ 156 (346)
+++++|.+|++++|||+|++||+||+||+|+|||+|+++||||+|||||||++|+|+|.+|++|||+||+ ++||+||+
T Consensus 100 ~v~k~l~~~k~~~pAr~GaiAp~dV~VpaG~tg~~P~~~s~fq~LgiptkI~kG~I~I~~d~~v~k~G~~v~~~~A~lL~ 179 (319)
T 3iz5_s 100 EVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLA 179 (319)
T ss_dssp HHHHHHHHSCEEECCCTTCBCSSCEEECCEECCCCSSCTHHHHHHTCCEEEETTEEEECSCEEEECTTSBCCHHHHHHHH
T ss_pred HHHHHHHHccccccccCCCcCCceEEECCCCCCCCCcchHHHHHcCCceEEecCeEEEcCceEEEecCCCcCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HcCCCcceeeeeeeEEecCCccccCcccccChhHHHHHHHHHHHHHHHhHHhhcCCCccchhhHHHHHHHHHHHHHhhcc
Q psy17475 157 MLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATE 236 (346)
Q Consensus 157 ~L~I~p~~~~l~i~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~~~~ls~~~~ypt~~s~~~~i~~a~~~~~ala~~~~ 236 (346)
+|||+|++|++.++++||+|.+|+|++|+||+|+|+++|++|++++++||+++||||++|+||+|.|||+|++||+++++
T Consensus 180 ~l~i~p~~f~l~l~~~~d~g~i~~~~vL~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~~~~i~~a~k~~~ala~~~~ 259 (319)
T 3iz5_s 180 KLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETE 259 (319)
T ss_dssp HHTCCCEEESCEEEEEEETTEEECHHHHSCCCHHHHHHHHHHHHHHHHHHHHHTCCSTTTHHHHHHHHHHHHHHHHSSSS
T ss_pred HhCCCceEEEeeeeEEEeCCceeCHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHhcCchhHHhhcCCCcC
Q psy17475 237 VDFEQAKTVKEFLKDPSKFLAAAAPAAA 264 (346)
Q Consensus 237 ~~~~~~e~ik~~l~~p~~~a~a~~~a~~ 264 (346)
|+||+++++|+||+||++|+++++++++
T Consensus 260 ~~~~~~e~ik~~l~~p~~~a~aa~~a~~ 287 (319)
T 3iz5_s 260 YSYPHADKIKEYLKDPSKFAVAAPVAAD 287 (319)
T ss_dssp CCC-------------------------
T ss_pred cccCCchhHHHHHhhhhhhccccccccc
Confidence 9999999999999999999988765543
No 2
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=100.00 E-value=4.1e-83 Score=616.03 Aligned_cols=264 Identities=46% Similarity=0.798 Sum_probs=125.4
Q ss_pred CccCCCCeEEEEEecCCCcHHHHHHHHHhhCCcEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEecCCHHHH
Q psy17475 1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNEV 80 (346)
Q Consensus 1 ~~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn~dp~ev 80 (346)
+++++|+++||++++|++++|+|+||+.||+.++++||||||||+|++++.++++++++|.++|+||+||+|||+||.++
T Consensus 17 e~l~~~~~v~vv~~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~~~~le~L~~~L~G~~gl~Ft~~dp~~v 96 (312)
T 3u5i_q 17 EYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFEKLLPFVKGNVGFVFTNEPLTEI 96 (312)
T ss_dssp HHHHHCSEEEEEECSSCCHHHHHHHHHHHSSSCEEEECCHHHHHHHHHTTSSSSCGGGGTGGGCCSSEEEEEESSCHHHH
T ss_pred HHHHhCCEEEEEecCCCCHHHHHHHHHHHhcCceEEEeehHHHHHHHhhCcccccChHHHHHhccCCEEEEEECCCHHHH
Confidence 36789999999999999999999999999998999999999999999998777789999999999999999999999999
Q ss_pred HHHHHhccccccccCCCCCCCcEEEcCCCCCCCCCchhhhhhcCCceEEecceEEEeeceeEeecCCc--hhHhHHHHHc
Q psy17475 81 REKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNML 158 (346)
Q Consensus 81 ~k~l~~~k~~~~Ar~G~iA~~dVvip~G~t~~~P~~~s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~--~~~A~LL~~L 158 (346)
+++|.+|++++|||+|++||+||+||+|+|||+|+++||||+|||||||++|+|+|.+|++|||+||+ ++||+||++|
T Consensus 97 ~k~l~~~k~~~pAr~GaiAp~dV~Ip~G~tg~~P~~~s~fq~Lgiptki~kG~I~I~~d~~v~k~G~~v~~~~A~lL~~l 176 (312)
T 3u5i_q 97 KNVIVSNRVAAPARAGAVAPEDIWVRAVNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLL 176 (312)
T ss_dssp HHHHHTSSCCC---------------------------------------------------------------------
T ss_pred HHHHHhccCcccccCCCcCCceEEECCCCCCCCCcchHHHHHcCCCeEeeCCEEEEccceEEEeCCCCcCHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCCcceeeeeeeEEecCCccccCcccccChhHHHHHHHHHHHHHHHhHHhhcCCCccchhhHHHHHHHHHHHHHhhcccc
Q psy17475 159 NISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238 (346)
Q Consensus 159 ~I~p~~~~l~i~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~~~~ls~~~~ypt~~s~~~~i~~a~~~~~ala~~~~~~ 238 (346)
||+|++|++++.++||+|.+|+|++|+||+|+|+++|++|++++++||+++||||++|+||+|.|||+|++||+++++|+
T Consensus 177 ~i~p~~~~l~l~~~~d~g~i~~~~~L~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~~~~i~~a~k~~~a~a~~~~~~ 256 (312)
T 3u5i_q 177 NISPFTFGLTVVQVYDNGQVFPXXXXXXXXXXXXXXXXXXXXXXXSISLAIGYPTLPSVGHTLINNYKDLLAVAIAASYH 256 (312)
T ss_dssp -------CCEEEEEEESSCCCCSTTTSCCSSTTTHHHHHHHTTCC-----------------------------------
T ss_pred CcCcEEEEEEEEEEecCCceeccccccccccccccccccchhhHhhhHHhhCCCcHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHhcCchhHHhhcCCCcC
Q psy17475 239 FEQAKTVKEFLKDPSKFLAAAAPAAA 264 (346)
Q Consensus 239 ~~~~e~ik~~l~~p~~~a~a~~~a~~ 264 (346)
||+++++|++|+||++|++|++++++
T Consensus 257 ~~~~~~ik~~la~p~a~a~aa~~a~~ 282 (312)
T 3u5i_q 257 YPEIEDLVDRIENPEKYAAAAPAATS 282 (312)
T ss_dssp --------------------------
T ss_pred CccchhHHHHHhChhhhhcccccccc
Confidence 99999999999999999998775543
No 3
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=6.1e-81 Score=602.10 Aligned_cols=258 Identities=70% Similarity=1.139 Sum_probs=17.1
Q ss_pred CccCCCCeEEEEEecCCCcHHHHHHHHHhhCCcEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEecCCHHHH
Q psy17475 1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNEV 80 (346)
Q Consensus 1 ~~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn~dp~ev 80 (346)
+++++|+++||++++||+++|+++||+.||+.++++||||||||+||+++.+++|++++|.++|+|++||+|||+||.++
T Consensus 19 e~l~~~~~v~vvd~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~~~~~e~L~~~L~G~~al~Ft~~Dp~~v 98 (317)
T 2zkr_g 19 QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEI 98 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhCCEEEEEECCCCCHHHHHHHHHHHhcCcEEEEEeHHHHHHHHhhCcccccchhhhhhccCCCEEEEEECCCHHHH
Confidence 47899999999999999999999999999988999999999999999998777889999999999999999999999999
Q ss_pred HHHHHhccccccccCCCCCCCcEEEcCCCCCCCCCchhhhhhcCCceEEecceEEEeeceeEeecCCc--hhHhHHHHHc
Q psy17475 81 REKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNML 158 (346)
Q Consensus 81 ~k~l~~~k~~~~Ar~G~iA~~dVvip~G~t~~~P~~~s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~--~~~A~LL~~L 158 (346)
+++|.+|++++|||+|++||+||+||+|+|+|+|+++||||+|||||||++|+|+|.+|++|||+||+ ++||+||++|
T Consensus 99 aK~l~~f~~~~pAr~GaiAp~dV~Ip~G~t~~~p~~~~~fq~LgipTkI~kG~I~i~~d~~v~k~G~~v~~~~A~lL~~l 178 (317)
T 2zkr_g 99 RDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNML 178 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhCccchhccCCcCCceEEeCCCCCCCCCcchHHHHHcCCCeEeeCCeEEEecceEEecCCCCcCHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCCcceeeeeeeEEecCCccccCcccccChhHHHHHHHHHHHHHHHhHHhhcCCCccchhhHHHHHHHHHHHHHhhcccc
Q psy17475 159 NISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238 (346)
Q Consensus 159 ~I~p~~~~l~i~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~~~~ls~~~~ypt~~s~~~~i~~a~~~~~ala~~~~~~ 238 (346)
||+|++|+++++++||+|.+|+|++|+||+|+|+++|++|++++++||++++|||++|+||+|.|||+|+++|+++++|+
T Consensus 179 ~i~p~~~~l~l~~~~d~g~~~~~~~L~i~~e~~~~~~~~~~~~~~~lsl~~~~pt~~s~~~~i~~a~~~~~ala~~~~~~ 258 (317)
T 2zkr_g 179 NISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYT 258 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCceeeeeeeeEEEecCcccchHhccCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHhcCchhHHhh
Q psy17475 239 FEQAKTVKEFLKDPSKFLAA 258 (346)
Q Consensus 239 ~~~~e~ik~~l~~p~~~a~a 258 (346)
||+++++|++|+||++|+++
T Consensus 259 ~~ea~~vk~~l~~~~~~~~a 278 (317)
T 2zkr_g 259 FPLAEKVKAFLADPSAFVAA 278 (317)
T ss_dssp --CHHHHHTTTHHHHHHHHH
T ss_pred hhhhhhHHHHHhccCccccc
Confidence 99999999999999999876
No 4
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3.9e-73 Score=552.90 Aligned_cols=241 Identities=29% Similarity=0.482 Sum_probs=189.9
Q ss_pred CccCCCCeEEEEEecCCCcHHHHHHHHHhhCC-cEEEEEehHHHHHHHhcccc--CCCCcccccCcccCCeEEEEecCCH
Q psy17475 1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGL-GVVLMGKNTMMRKAIRGHLE--HNPGLERLLPHIKGNVGFVFTRGDL 77 (346)
Q Consensus 1 ~~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~-~~~~vgKNtLmr~AL~~~~~--~~~~l~~L~~~l~G~~gliFTn~dp 77 (346)
+++++|+++||++++|++++|+|+||+.||+. ++|+||||||||+|++++.+ ++|++++|.++|+||+||+|||+||
T Consensus 17 e~l~~~~~v~v~~~~gl~v~ql~~lR~~lr~~g~~~~v~KNtL~r~Al~~~~~~e~~~~l~~L~~~L~G~~~l~Ft~~dp 96 (339)
T 3j21_k 17 NLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQELGKPELEKLINYIEGGAGILVTTMNP 96 (339)
T ss_dssp HHHHHSSEEEEEECTTCCTTHHHHHHHHHHHTTEEEECCHHHHSCHHHHHHHSSCCCSSSSSSSCCCCTTEEEEEESSCH
T ss_pred HHHHhCCEEEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEhHHHHHHHHhcChhhhccccHHHHHHHhcCCeEEEEECCCH
Confidence 36789999999999999999999999999987 89999999999999999853 5789999999999999999999999
Q ss_pred HHHHHHHHhccccccccCCCCCCCcEEEcCCCCCCCCCc-hhhhhhcCCceEEecceEEEeeceeEeecCCc--hhHhHH
Q psy17475 78 NEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEK-TSFFQALSIPTKISKGTIEIINDVHILKEGDS--SREATL 154 (346)
Q Consensus 78 ~ev~k~l~~~k~~~~Ar~G~iA~~dVvip~G~t~~~P~~-~s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~--~~~A~L 154 (346)
.+++++|.+|++++|||+|++||+||+||+|+|+++|++ +||||+|||||||++|+|+|.+|++|||+||+ ++||+|
T Consensus 97 ~~v~k~l~~~~~~~~Ar~GaiAp~dV~Ip~G~t~~~p~~~~~~fq~lgiptki~~G~I~i~~d~~v~k~G~~v~~~~A~l 176 (339)
T 3j21_k 97 FKLYKFLQQNRQPAPAKPGAKVPKDVVIPAGPTSLAPGPIVGQMQAMGIPARIERGKVTIQKDTVVLKAGEEITPELANI 176 (339)
T ss_dssp HHHHHHHHHSCCCCCCCTTCBCSSCEEECCEECSCCSSHHHHHHHHHTCCEEEETTEEEECSCEEEECTTSBCCHHHHHH
T ss_pred HHHHHHHHHcCCcccccCCCcCCceEEecCCCCCCCCCccHHHHHHcCCCeEeccCeEEEccceEEEecCCCcCHHHHHH
Confidence 999999999999999999999999999999999999998 69999999999999999999999999999999 999999
Q ss_pred HHHcCCCcceeeeeeeEEecCCccccCcccccChhHHHHHHHHHHHHHHHhHHhhcCCCccchhhHHHHHHHHHHHHHhh
Q psy17475 155 LNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAA 234 (346)
Q Consensus 155 L~~L~I~p~~~~l~i~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~~~~ls~~~~ypt~~s~~~~i~~a~~~~~ala~~ 234 (346)
|++|||+|++|++++.++||+|.+|+|++|+||+|+|++.|++|++++++||+++||||++|+||+|.|||+++++||++
T Consensus 177 L~~l~i~p~~~~l~l~~~~~~g~i~~~~~L~i~~e~~~~~~~~a~~~a~~lsl~~~ypT~~svp~~i~~a~k~~lala~~ 256 (339)
T 3j21_k 177 LNALGIQPLEVGLDLLAVYEDGIIYTPDVLAIDESEYINMLQKAYMHAFNLAVNIAYPTPQTIEAIIQKAFLNAKAVAVE 256 (339)
T ss_dssp HHHHTCCCSCCSCEEEEEEETTEEECHHHHCCCHHHHHHHC---------------------------------------
T ss_pred HHHcCCCcEEeeeeEEEEEeCCcEecHHhCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccc
Q psy17475 235 TEVDFEQ 241 (346)
Q Consensus 235 ~~~~~~~ 241 (346)
++|+||+
T Consensus 257 ~~~~~~e 263 (339)
T 3j21_k 257 AGYITKE 263 (339)
T ss_dssp -------
T ss_pred cCCCChh
Confidence 9999877
No 5
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Probab=100.00 E-value=2e-69 Score=526.69 Aligned_cols=244 Identities=25% Similarity=0.470 Sum_probs=14.0
Q ss_pred ccCCCCeEEEEEecCCCcHHHHHHHHHhhCCcEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEecCCHHHHH
Q psy17475 2 LVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNEVR 81 (346)
Q Consensus 2 ~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn~dp~ev~ 81 (346)
++++|+.+||++|+|++++|+++||+.||+.++|+||||||||+||+++.. ++++|.++|+|++||+||++||.+++
T Consensus 26 ~l~~~~~v~vvdy~GLtv~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~---~le~L~~~LkG~tal~Ft~~Dp~~va 102 (348)
T 1vq8_G 26 MIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERALDDVDD---GLEDLNGYITGQVGLIGTDDNPFSLF 102 (348)
T ss_dssp HHHC---------------------------------CHHHHHHHHTC--------------------------------
T ss_pred HHHhCCEEEEEECCCCCHHHHHHHHHHHHhcceEEEeHHHHHHHHHHhCCc---chHHHHHhccCCEEEEEeCCCHHHHH
Confidence 578999999999999999999999999998899999999999999998732 48999999999999999999999999
Q ss_pred HHHHhccccccccCCCCCCCcEEEcCCCCCCCCCch-hhhhhcCCceEEecceEEEeeceeEeecCCc--hhHhHHHHHc
Q psy17475 82 EKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKT-SFFQALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNML 158 (346)
Q Consensus 82 k~l~~~k~~~~Ar~G~iA~~dVvip~G~t~~~P~~~-s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~--~~~A~LL~~L 158 (346)
++|.+|++++|||+|++||+||+||+|+|+++|+++ ||||+|||||||++|+|+|.+|++|||+||+ ++||+||++|
T Consensus 103 K~l~~f~~~~pAr~GaiAp~dV~IpaG~t~~~P~~~~~~fq~LgIPTkI~kG~I~I~~d~~v~k~G~~v~~~~A~LL~~L 182 (348)
T 1vq8_G 103 QELEASKTPAPIGAGEVAPNDIVIPEGDTGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNVLNEL 182 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcccchhhcCCcCCceEEeCCCCCCCCCCchHHHHHHcCCCEEeccCceEecCceEEeeCCCCcCHHHHHHHHHc
Confidence 999999999999999999999999999999999985 9999999999999999999999999999999 9999999999
Q ss_pred CCCcceeeeeeeEEecCCccccCcccccChhHHHHHHHHHHHHHHHhHHhhcCCCccchhhHHHHHHHHHHHHHhhcccc
Q psy17475 159 NISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238 (346)
Q Consensus 159 ~I~p~~~~l~i~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~~~~ls~~~~ypt~~s~~~~i~~a~~~~~ala~~~~~~ 238 (346)
||+|++|+++++++|++|.+|+|++|+||+|+|+++|++|++++++||++++|||++|+||+|.|||+|+++||++++|.
T Consensus 183 gI~p~~f~l~l~~~~d~g~~~~~~vL~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~~~~i~~a~~~~~ala~~~~~~ 262 (348)
T 1vq8_G 183 GIEPKEVGLDLRAVFADGVLFEPEELELDIDEYRSDIQAAAGRAFNLSVNADYPTATTAPTMLQSDRGNAKSLALQAAIE 262 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCceeeeeeeEEEEeCCcccCHHHccCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHhcCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHhc
Q psy17475 239 FEQAKTVKEFLK 250 (346)
Q Consensus 239 ~~~~e~ik~~l~ 250 (346)
||+ .+..+|+
T Consensus 263 ~~~--~~~~il~ 272 (348)
T 1vq8_G 263 DPE--VVPDLVS 272 (348)
T ss_dssp ------------
T ss_pred Chh--hHHHHHH
Confidence 888 4444443
No 6
>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=100.00 E-value=2e-66 Score=495.39 Aligned_cols=248 Identities=27% Similarity=0.477 Sum_probs=169.1
Q ss_pred CccCCCCeEEEEEecCCCcHHHHHHHHHhhCC-cEEEEEehHHHHHHHhcccc--CCCCcccccCcccCCeEEEEecCCH
Q psy17475 1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGL-GVVLMGKNTMMRKAIRGHLE--HNPGLERLLPHIKGNVGFVFTRGDL 77 (346)
Q Consensus 1 ~~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~-~~~~vgKNtLmr~AL~~~~~--~~~~l~~L~~~l~G~~gliFTn~dp 77 (346)
+++++|+.+++++++|++++|+++||+.||+. ++++||||||||+|++++.+ .+|++++|.++|+|++|++||++||
T Consensus 17 ~~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~g~~~~v~KNtL~~~Al~~~~~~~~~~~~~~L~~~l~G~~al~Ft~~dp 96 (284)
T 3a1y_G 17 KLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELGKPELEKLVEYIDRGAGILVTNMNP 96 (284)
T ss_dssp HHHTTCSEEEEEECTTCCHHHHHHHHHHHHHTTEEEEECSSSSCCHHHHHHHTTCSCSSTTSSSCCCCTTEEEEEESSCH
T ss_pred HHHHhCCEEEEEEcCCCCHHHHHHHHHHHHhcCcEEEEeHHHHHHHHHhhCccccccccHHHHhhhcCCCEEEEEECCCH
Confidence 36899999999999999999999999999976 89999999999999999864 4788999999999999999999999
Q ss_pred HHHHHHHHhccccccccCCCCCCCcEEEcCCCCCCCCCc-hhhhhhcCCceEEecceEEEeeceeEeecCCc--hhHhHH
Q psy17475 78 NEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEK-TSFFQALSIPTKISKGTIEIINDVHILKEGDS--SREATL 154 (346)
Q Consensus 78 ~ev~k~l~~~k~~~~Ar~G~iA~~dVvip~G~t~~~P~~-~s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~--~~~A~L 154 (346)
.+++++|.+|+.++|+|.|.+|++||++|+|+|++.|++ .++||+|||||+|++|+|+|.+|++||++||+ ++||+|
T Consensus 97 ~~vak~l~~f~~~~~ar~Gaia~~dv~ip~g~~~~~p~~~~~~l~~LgIptki~~g~I~i~~d~~v~~~G~~l~~~~a~l 176 (284)
T 3a1y_G 97 FKLYKFLQQNRQPAPAKPGAVVPKDVVVPAGPTPLAPGPIVGQMQALGIPARIEKGKVTIQKDTTVLKAGEVITPELANI 176 (284)
T ss_dssp HHHHHHHHHCCCC-------------------------------------------------------------------
T ss_pred HHHHHHHHHhcchhhhhcCCccceeEEecCCCCCCCCcchHHHHHHCCCCeEEecCeeEeecceEEEecCCCcCHHHHHH
Confidence 999999999999999999999999999999999998877 59999999999999999999999999999999 999999
Q ss_pred HHHcCCCcceeeeeeeEEecCCccccCcccccChhHHHHHHHHHHHHHHHhHHhhcCCCccchhhHHHHHHHHHHHHHhh
Q psy17475 155 LNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAA 234 (346)
Q Consensus 155 L~~L~I~p~~~~l~i~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~~~~ls~~~~ypt~~s~~~~i~~a~~~~~ala~~ 234 (346)
|++|||+|++|++++.++|++|.+|++++|+||+|++...|.+|+++|++||+++||||++|+||+|.|||++++|||++
T Consensus 177 L~~L~i~~~~~~l~i~~~~~~~~~~~~~vl~i~~e~~~~~~~~a~~~a~~lsl~~~~pt~~s~~~~i~ka~~~~~ala~~ 256 (284)
T 3a1y_G 177 LNALGIQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYIDMLQKAYMHAFNLAVNIAYPTPETIEAIIQKAFLNAKTVAIE 256 (284)
T ss_dssp ------CCCCCCCEEEEEEETTEEECHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTCCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHhhccccCCHHHccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhHHHHhc
Q psy17475 235 TEVDFEQAKTVKEFLK 250 (346)
Q Consensus 235 ~~~~~~~~e~ik~~l~ 250 (346)
++|.||+ .++.+|+
T Consensus 257 ~~~~~~~--~~~~~~~ 270 (284)
T 3a1y_G 257 AGYITKE--TIQDIIG 270 (284)
T ss_dssp TTCCCTT--THHHHHH
T ss_pred cCCCChh--hHHHHHH
Confidence 9999888 4544543
No 7
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3.9e-61 Score=441.38 Aligned_cols=194 Identities=30% Similarity=0.501 Sum_probs=187.3
Q ss_pred CccCCCCeEEEEEecCCCcHHHHHHHHHhhCCcEEEEEehHHHHHHHhccc--cCCCCcccccCcccCCeEEEEecCCHH
Q psy17475 1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHL--EHNPGLERLLPHIKGNVGFVFTRGDLN 78 (346)
Q Consensus 1 ~~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~~~~~vgKNtLmr~AL~~~~--~~~~~l~~L~~~l~G~~gliFTn~dp~ 78 (346)
+++++|+++||++++|++++|+|+||+.||++++++||||||||+|++++. +++|++++|.++|+|++||+|||+||.
T Consensus 14 e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~r~Al~~~~~~e~~~~~~~L~~~l~G~~~l~Ft~~dp~ 93 (213)
T 3jsy_A 14 GLIKSKPVVAIVDMMDVPAPQLQEIRDKIRDKVKLRMSRNTLIIRALKEAAEELNNPKLAELANYVERGAAILVTDMNPF 93 (213)
T ss_dssp HHHHHSSEEEEEECCSCCHHHHHHHHHHHTTTEEEEECCHHHHHHHHHHHHHHTTCGGGGGGGGGCCSSEEEEEESSCHH
T ss_pred HHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCCEEEEEeHHHHHHHHhhchhhhcccchhHHHHhCcCCeEEEEeCCCHH
Confidence 367899999999999999999999999999888999999999999999883 467899999999999999999999999
Q ss_pred HHHHHHHhccccccccCCCCCCCcEEEcCCCCCCCCCc-hhhhhhcCCceEEecceEEEeeceeEeecCCc--hhHhHHH
Q psy17475 79 EVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEK-TSFFQALSIPTKISKGTIEIINDVHILKEGDS--SREATLL 155 (346)
Q Consensus 79 ev~k~l~~~k~~~~Ar~G~iA~~dVvip~G~t~~~P~~-~s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~--~~~A~LL 155 (346)
+++++|.+|++++|||+|++||+||+||+|+|+++|++ +||||+|||||||++|+|+|.+|++|||+||+ ++||+||
T Consensus 94 ~v~k~l~~~~~~~~Ar~GaiAp~dV~ip~G~t~~~p~~~~~~~q~lgiptki~~G~I~i~~d~~v~k~G~~v~~~~A~lL 173 (213)
T 3jsy_A 94 KLYKLLEENKSPAPVRGGQIAPCDIKVEKGSTGMPPGPFLGELKSVGIPAAIEKGKIAIKEDKVVVKKGEVVSPKLAAVL 173 (213)
T ss_dssp HHHHHHHHSCEEECCCTTCBCSSCEEECSEEEEECSSTHHHHHHHTTCCEEEETTEEEECSCEEEECTTSBCCHHHHHHH
T ss_pred HHHHHHHHcCCcccccCCCcCCceEEECCCCCCCCCCccHHHHHHcCCceEeecCeEEEccceEEEecCCCcCHHHHHHH
Confidence 99999999999999999999999999999999999998 79999999999999999999999999999999 9999999
Q ss_pred HHcCCCcceeeeeeeEEecCCccccCcccccChhHHHHH
Q psy17475 156 NMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVK 194 (346)
Q Consensus 156 ~~L~I~p~~~~l~i~~~~~~g~~~~~~~L~i~~e~~~~~ 194 (346)
++|||+|++|++.+.++||+|.+|+|++|+||+|+|+++
T Consensus 174 ~~l~i~p~~~~l~l~~~~~~g~i~~~~~L~i~~e~~~~~ 212 (213)
T 3jsy_A 174 DRLGIKPIKVGLNILAVYEDGIIYTPDVLKVDEEKLLAD 212 (213)
T ss_dssp HHTTCCCEEESCEEEEEEETTEEECHHHHHHHCSCTTSC
T ss_pred HHcCCCcEEEEEEEEEEEeCCceeCHHHcccCHHHHhhh
Confidence 999999999999999999999999999999999998653
No 8
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=99.84 E-value=1.2e-22 Score=185.93 Aligned_cols=76 Identities=29% Similarity=0.483 Sum_probs=73.7
Q ss_pred CCcchhhhccccccccccceeeccCCccCccHHHHHhhcCCcceeeceeEEEEecCCcccCCCCcCCChHHHHHhh
Q psy17475 269 SNRSEERFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKF 344 (346)
Q Consensus 269 ~~~~~~~i~~g~i~I~~d~~~ik~G~~v~~s~a~lL~~L~I~P~~~gl~~~~vy~~g~i~~~~~L~i~~e~~~~~~ 344 (346)
+.|+|++|++|+|+|.+|++|+|+||+|++++|.||++|||+||+|||.++++||+|++|+|++||||+|+|+++|
T Consensus 138 ~lgiptki~~G~I~i~~d~~v~k~G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~~~g~i~~~~~L~i~~e~~~~~~ 213 (213)
T 3jsy_A 138 SVGIPAAIEKGKIAIKEDKVVVKKGEVVSPKLAAVLDRLGIKPIKVGLNILAVYEDGIIYTPDVLKVDEEKLLADI 213 (213)
T ss_dssp HTTCCEEEETTEEEECSCEEEECTTSBCCHHHHHHHHHTTCCCEEESCEEEEEEETTEEECHHHHHHHCSCTTSCC
T ss_pred HcCCceEeecCeEEEccceEEEecCCCcCHHHHHHHHHcCCCcEEEEEEEEEEEeCCceeCHHHcccCHHHHhhhC
Confidence 4599999999999999999999999999999999999999999999999999999999999999999999998864
No 9
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=99.83 E-value=3.7e-22 Score=191.99 Aligned_cols=77 Identities=34% Similarity=0.611 Sum_probs=30.3
Q ss_pred CCcchhhhccccccccccceeeccCCccCccHHHHHhhcCCcceeeceeEEEEecCCcccCCCCcCCChHHHHHhhh
Q psy17475 269 SNRSEERFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFL 345 (346)
Q Consensus 269 ~~~~~~~i~~g~i~I~~d~~~ik~G~~v~~s~a~lL~~L~I~P~~~gl~~~~vy~~g~i~~~~~L~i~~e~~~~~~~ 345 (346)
+.|+|++|++|+|||.+|++|+|+||+||+++|.||++|||+||+|||.++++||+|++|+|++||||+|+|+++|+
T Consensus 138 ~Lgiptki~kG~I~I~~d~~v~k~G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~d~g~i~~~~~L~i~~e~~~~~~~ 214 (312)
T 3u5i_q 138 ALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTFGLTVVQVYDNGQVFPXXXXXXXXXXXXXXXX 214 (312)
T ss_dssp ----------------------------------------------CCEEEEEEESSCCCCSTTTSCCSSTTTHHHH
T ss_pred HcCCCeEeeCCEEEEccceEEEeCCCCcCHHHHHHHHHcCcCcEEEEEEEEEEecCCceeccccccccccccccccc
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999986
No 10
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=99.83 E-value=6.4e-22 Score=190.87 Aligned_cols=77 Identities=43% Similarity=0.767 Sum_probs=75.0
Q ss_pred CCcchhhhccccccccccceeeccCCccCccHHHHHhhcCCcceeeceeEEEEecCCcccCCCCcCCChHHHHHhhh
Q psy17475 269 SNRSEERFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFL 345 (346)
Q Consensus 269 ~~~~~~~i~~g~i~I~~d~~~ik~G~~v~~s~a~lL~~L~I~P~~~gl~~~~vy~~g~i~~~~~L~i~~e~~~~~~~ 345 (346)
+.|+|++|++|+|||.+|++|+|+||+|++++|.||++|||+||+|||.++++||+|.+|+|++||||+|+|+++|+
T Consensus 143 ~LgiptkI~kG~I~I~~d~~v~k~G~~v~~~~A~lL~~l~i~p~~f~l~l~~~~d~g~i~~~~vL~i~~e~~~~~~~ 219 (319)
T 3iz5_s 143 VLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFA 219 (319)
T ss_dssp HHTCCEEEETTEEEECSCEEEECTTSBCCHHHHHHHHHHTCCCEEESCEEEEEEETTEEECHHHHSCCCHHHHHHHH
T ss_pred HcCCceEEecCeEEEcCceEEEecCCCcCHHHHHHHHHhCCCceEEEeeeeEEEeCCceeCHHHcCCCHHHHHHHHH
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999986
No 11
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.82 E-value=1.4e-21 Score=190.02 Aligned_cols=77 Identities=30% Similarity=0.501 Sum_probs=73.9
Q ss_pred CcchhhhccccccccccceeeccCCccCccHHHHHhhcCCcceeeceeEEEEecCCcccCCCCcCCChHHHHHhhhC
Q psy17475 270 NRSEERFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLE 346 (346)
Q Consensus 270 ~~~~~~i~~g~i~I~~d~~~ik~G~~v~~s~a~lL~~L~I~P~~~gl~~~~vy~~g~i~~~~~L~i~~e~~~~~~~~ 346 (346)
.|+|++|++|+|+|.+|++|+|+||+|++++|.||++|||+||+|||.++++||+|.+|+|++||||+|+|+++|++
T Consensus 143 lgiptki~~G~I~i~~d~~v~k~G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~~~g~i~~~~~L~i~~e~~~~~~~~ 219 (339)
T 3j21_k 143 MGIPARIERGKVTIQKDTVVLKAGEEITPELANILNALGIQPLEVGLDLLAVYEDGIIYTPDVLAIDESEYINMLQK 219 (339)
T ss_dssp HTCCEEEETTEEEECSCEEEECTTSBCCHHHHHHHHHHTCCCSCCSCEEEEEEETTEEECHHHHCCCHHHHHHHC--
T ss_pred cCCCeEeccCeEEEccceEEEecCCCcCHHHHHHHHHcCCCcEEeeeeEEEEEeCCcEecHHhCCCCHHHHHHHHHH
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999863
No 12
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.81 E-value=1.1e-21 Score=189.08 Aligned_cols=78 Identities=54% Similarity=0.891 Sum_probs=0.0
Q ss_pred CCcchhhhccccccccccceeeccCCccCccHHHHHhhcCCcceeeceeEEEEecCCcccCCCCcCCChHHHHHhhhC
Q psy17475 269 SNRSEERFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLE 346 (346)
Q Consensus 269 ~~~~~~~i~~g~i~I~~d~~~ik~G~~v~~s~a~lL~~L~I~P~~~gl~~~~vy~~g~i~~~~~L~i~~e~~~~~~~~ 346 (346)
+.|+|++|++|+|+|.+|++|+|+||+|++++|.||++|||+||+|||.++++||+|++|+|++||||+|+|+++|++
T Consensus 140 ~LgipTkI~kG~I~i~~d~~v~k~G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~d~g~~~~~~~L~i~~e~~~~~~~~ 217 (317)
T 2zkr_g 140 ALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLE 217 (317)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HcCCCeEeeCCeEEEecceEEecCCCCcCHHHHHHHHHcCCCceeeeeeeeEEEecCcccchHhccCCHHHHHHHHHH
Confidence 459999999999999999999999999999999999999999999999999999999999999999999999999864
No 13
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Probab=99.79 E-value=4.7e-21 Score=186.55 Aligned_cols=78 Identities=26% Similarity=0.481 Sum_probs=0.0
Q ss_pred CCcchhhhccccccccccceeeccCCccCccHHHHHhhcCCcceeeceeEEEEecCCcccCCCCcCCChHHHHHhhhC
Q psy17475 269 SNRSEERFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLE 346 (346)
Q Consensus 269 ~~~~~~~i~~g~i~I~~d~~~ik~G~~v~~s~a~lL~~L~I~P~~~gl~~~~vy~~g~i~~~~~L~i~~e~~~~~~~~ 346 (346)
+.|+|++|.+|+|+|.+|++|+|+||+|++++|.||++|||+||+|||.++++||+|++|+|++|+||+|+|+++|++
T Consensus 144 ~LgIPTkI~kG~I~I~~d~~v~k~G~~v~~~~A~LL~~LgI~p~~f~l~l~~~~d~g~~~~~~vL~i~~e~~~~~~~~ 221 (348)
T 1vq8_G 144 SVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNVLNELGIEPKEVGLDLRAVFADGVLFEPEELELDIDEYRSDIQA 221 (348)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HcCCCEEeccCceEecCceEEeeCCCCcCHHHHHHHHHcCCCceeeeeeeEEEEeCCcccCHHHccCCHHHHHHHHHH
Confidence 349999999999999999999999999999999999999999999999999999999999999999999999999863
No 14
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=99.69 E-value=2.5e-17 Score=146.01 Aligned_cols=95 Identities=19% Similarity=0.289 Sum_probs=83.1
Q ss_pred CccCCCC-eEEEEEecCCCcHHHHHHHHHhhCC-cEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEecCCHH
Q psy17475 1 QLVDEYP-KCFVVGADNVGSRQFQNIRQSLEGL-GVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLN 78 (346)
Q Consensus 1 ~~l~~y~-~v~iv~~~nv~s~qlq~iR~~LR~~-~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn~dp~ 78 (346)
+++++|+ .+++++|+|++++|+++||+.||+. ++++|+|||||++|+++. +++. .++|+|+++++|| +||.
T Consensus 15 ~~l~~~~~~v~v~~~~gltv~~~~~LR~~lr~~g~~~~V~KNtL~~~Al~~~-----~~~~-~~~l~G~~a~~fs-~dp~ 87 (173)
T 2j01_J 15 ENLERAQGSFFLVNYQGLPAKETHALRQALKQNGARLFVAKNTLIRLALKEL-----GLPE-LDGLQGPSAVVFY-EDPV 87 (173)
T ss_pred HHHHHCCCEEEEEEcCCCCHHHHHHHHHHHHHCCcEEEEehhHHHHHHHhcC-----CCCc-cccccCCEEEEEe-CCHH
Confidence 3578999 9999999999999999999999974 899999999999999987 5888 9999999999999 9999
Q ss_pred HHHHHHHhccccccccCCCCCCCcEEEcCCC
Q psy17475 79 EVREKLLENKVQAPARNGAIAPCPVTIPAQN 109 (346)
Q Consensus 79 ev~k~l~~~k~~~~Ar~G~iA~~dVvip~G~ 109 (346)
++.++|.+|.... ++..++++.|.
T Consensus 88 ~~ak~l~~f~k~~-------~~~~l~ikgg~ 111 (173)
T 2j01_J 88 AAAKTLVQFAKSN-------PKGIPQVKSGL 111 (173)
T ss_pred HHHHHHHHHHHhC-------CCCCeEEEEEE
Confidence 9999999885421 24556666654
No 15
>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A
Probab=99.69 E-value=3e-17 Score=146.39 Aligned_cols=83 Identities=14% Similarity=0.178 Sum_probs=78.4
Q ss_pred ccCCCCeEEEEEecCCCcHHHHHHHHHhhCC----cEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEec-CC
Q psy17475 2 LVDEYPKCFVVGADNVGSRQFQNIRQSLEGL----GVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTR-GD 76 (346)
Q Consensus 2 ~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~----~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn-~d 76 (346)
++++|+.+++++|+|++++|++++|++||+. ++++|+|||||++|+++. +++.|.++|+|+++++||+ +|
T Consensus 18 ~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~~~~g~~~~V~KNtL~~~Al~~~-----~~~~L~~~l~G~~a~~fs~~~d 92 (180)
T 1zav_A 18 IFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNA-----EYEGYEEFLKGPTAVLYVTEGD 92 (180)
T ss_dssp HHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEEEEEECHHHHHHHHHHT-----TCCSCGGGCSSSEEEEEESSSC
T ss_pred HHHhCCEEEEEEeCCCCHHHHHHHHHHHHhcccCCeEEEEehHHHHHHHHccC-----ChhhHHHhCcCCEEEEEecCCC
Confidence 5789999999999999999999999999965 899999999999999987 6899999999999999999 99
Q ss_pred HHHHHHHHHhccc
Q psy17475 77 LNEVREKLLENKV 89 (346)
Q Consensus 77 p~ev~k~l~~~k~ 89 (346)
|.+++++|.+|..
T Consensus 93 p~~~ak~l~~f~k 105 (180)
T 1zav_A 93 PVEAVKIIYNFYK 105 (180)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998854
No 16
>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=99.65 E-value=1.4e-17 Score=158.45 Aligned_cols=77 Identities=27% Similarity=0.484 Sum_probs=35.1
Q ss_pred CCcchhhhccccccccccceeeccCCccCccHHHHHhhcCCcceeeceeEEEEecCCcccCCCCcCCChHHHHHhhh
Q psy17475 269 SNRSEERFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFL 345 (346)
Q Consensus 269 ~~~~~~~i~~g~i~I~~d~~~ik~G~~v~~s~a~lL~~L~I~P~~~gl~~~~vy~~g~i~~~~~L~i~~e~~~~~~~ 345 (346)
+.|+|++|.+|+|+|.+|++|+++||+|++++|.||++|||+|++||+.++++|++|.+|+|++|+||+|++.++|+
T Consensus 142 ~LgIptki~~g~I~i~~d~~v~~~G~~l~~~~a~lL~~L~i~~~~~~l~i~~~~~~~~~~~~~vl~i~~e~~~~~~~ 218 (284)
T 3a1y_G 142 ALGIPARIEKGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYIDMLQ 218 (284)
T ss_dssp -----------------------------------------CCCCCCCEEEEEEETTEEECHHHHSCCHHHHHHHHH
T ss_pred HCCCCeEEecCeeEeecceEEEecCCCcCHHHHHHHHHcCCCHHHHHHHHHHHhhccccCCHHHccCCHHHHHHHHH
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999885
No 17
>3sgf_H 50S ribosomal protein L10; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 3uos_H 3j12_J* 3j0w_J* 3j0y_J* 3j11_J* 3j0t_J* 3j14_J*
Probab=99.55 E-value=5.9e-17 Score=142.71 Aligned_cols=83 Identities=14% Similarity=0.170 Sum_probs=77.2
Q ss_pred ccCCCCeEEEEEecCCCcHHHHHHHHHhhCC-cEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEecCCHHHH
Q psy17475 2 LVDEYPKCFVVGADNVGSRQFQNIRQSLEGL-GVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNEV 80 (346)
Q Consensus 2 ~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~-~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn~dp~ev 80 (346)
.+++|+.++++||+|++++|++++|+.||+. ++++|+|||||++|+++. +++.|.++|+|+++++||++||.++
T Consensus 18 ~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~g~~~~V~KNtL~~~Al~~~-----~~~~L~~~l~G~tai~fs~~dp~~~ 92 (165)
T 3sgf_H 18 VAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRAVEGT-----PFECLKDAFVGPTLIAYSMEHPGAA 92 (165)
T ss_dssp HHSCSCEEECCCTTCCHHHHHHHTTTTTSSCCSSEECCCCTTTTTTTTTC-----TTTCTTCSTTCCSCCCEEEECSSCS
T ss_pred HHHhCCEEEEEEcCCCCHHHHHHHHHHHHHcCcEEEEECcHHHHHHHhcC-----CcchhHHhCcCCEEEEEeCCCHHHH
Confidence 5789999999999999999999999999984 899999999999999985 7899999999999999999999999
Q ss_pred HHHHHhccc
Q psy17475 81 REKLLENKV 89 (346)
Q Consensus 81 ~k~l~~~k~ 89 (346)
.+++.+|..
T Consensus 93 aK~l~~f~K 101 (165)
T 3sgf_H 93 ARLFKEFAK 101 (165)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887643
Done!