Query psy17475
Match_columns 346
No_of_seqs 332 out of 1388
Neff 6.3
Searched_HMMs 13730
Date Fri Aug 16 23:28:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17475.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17475hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zava1 d.58.62.1 (A:1-177) Ri 99.3 2.6E-12 1.9E-16 111.9 8.3 83 2-89 17-104 (177)
2 d2cqqa1 a.4.1.3 (A:8-66) DnaJ 34.5 11 0.0008 25.2 2.4 49 40-97 9-58 (59)
3 d1ks9a1 a.100.1.7 (A:168-291) 29.1 46 0.0034 24.2 5.7 60 186-245 2-61 (124)
4 d1luza_ b.40.4.5 (A:) Viral st 25.0 24 0.0017 25.1 2.9 32 7-38 33-65 (85)
5 d2ftsa2 b.103.1.1 (A:318-498) 18.3 32 0.0023 27.4 2.8 32 282-313 146-177 (181)
6 d1wu2a2 b.103.1.1 (A:6-180) Mo 17.0 39 0.0028 26.7 3.0 32 282-313 142-173 (175)
7 d1j8ba_ d.222.1.1 (A:) Hypothe 16.5 59 0.0043 22.9 3.6 29 178-206 50-78 (92)
8 d2oc5a1 a.25.1.6 (A:20-241) Hy 15.6 31 0.0022 28.3 1.9 38 179-219 180-217 (222)
9 d1jjga_ b.40.4.5 (A:) Viral st 14.2 25 0.0018 25.6 0.9 32 7-38 57-89 (102)
10 d2nqra2 b.103.1.1 (A:7-177) Mo 13.8 56 0.0041 25.6 3.2 31 283-313 137-167 (171)
No 1
>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]}
Probab=99.28 E-value=2.6e-12 Score=111.89 Aligned_cols=83 Identities=14% Similarity=0.171 Sum_probs=75.4
Q ss_pred ccCCCCeEEEEEecCCCcHHHHHHHHHhhC----CcEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEe-cCC
Q psy17475 2 LVDEYPKCFVVGADNVGSRQFQNIRQSLEG----LGVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFT-RGD 76 (346)
Q Consensus 2 ~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~----~~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFT-n~d 76 (346)
.+++++.+++++|.|+++++++++|++||. .++++|.||||||+|++++ +++.+.+++.|+++++|+ .+|
T Consensus 17 ~l~~s~~vv~~~y~gLtv~e~~~LR~~lre~~~~g~~~kV~KNtL~k~Al~~t-----~~~~l~~~l~g~~a~~~~~~~d 91 (177)
T d1zava1 17 IFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNA-----EYEGYEEFLKGPTAVLYVTEGD 91 (177)
T ss_dssp HHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEEEEEECHHHHHHHHHHT-----TCCSCGGGCSSSEEEEEESSSC
T ss_pred HHHhCCEEEEEecCCCCHHHHHHHHHHHHHhccCCeEEEEechHHHHHHHhcC-----CcchhhHHHhhccceeeeecCC
Confidence 578999999999999999999999999994 4799999999999999987 578899999999999996 579
Q ss_pred HHHHHHHHHhccc
Q psy17475 77 LNEVREKLLENKV 89 (346)
Q Consensus 77 p~ev~k~l~~~k~ 89 (346)
|....+++.+|..
T Consensus 92 ~~~~aK~l~~f~k 104 (177)
T d1zava1 92 PVEAVKIIYNFYK 104 (177)
T ss_dssp THHHHHHHHHHHH
T ss_pred chhhhhHHHHHhh
Confidence 9999999988744
No 2
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.49 E-value=11 Score=25.21 Aligned_cols=49 Identities=16% Similarity=0.284 Sum_probs=35.8
Q ss_pred hHHHHHHHhccccCCCC-cccccCcccCCeEEEEecCCHHHHHHHHHhccccccccCCC
Q psy17475 40 NTMMRKAIRGHLEHNPG-LERLLPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGA 97 (346)
Q Consensus 40 NtLmr~AL~~~~~~~~~-l~~L~~~l~G~~gliFTn~dp~ev~k~l~~~k~~~~Ar~G~ 97 (346)
|+++.+||...+...|+ ++++.+++ | ..+.++.+...+.+...+..+|.
T Consensus 9 ~~~le~Al~~~P~gt~~RW~~IA~~v-g--------kt~~ev~~~~k~l~e~~~~~~g~ 58 (59)
T d2cqqa1 9 LSQLTRSMVKFPGGTPGRWEKIAHEL-G--------RSVTDVTTKAKQLKDSVTCSPGM 58 (59)
T ss_dssp HHHHHHHHHHSCTTCTTHHHHHHHHH-T--------SCHHHHHHHHHHHHHSCCCCSCC
T ss_pred HHHHHHHHHHCCCCCcHHHHHHHHHH-C--------CCHHHHHHHHHHHHHhcccCCCC
Confidence 67899999988766555 78888887 6 45788888877776655555554
No 3
>d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}
Probab=29.11 E-value=46 Score=24.24 Aligned_cols=60 Identities=17% Similarity=0.068 Sum_probs=41.3
Q ss_pred cChhHHHHHHHHHHHHHHHhHHhhcCCCccchhhHHHHHHHHHHHHHhhccccccchhhH
Q psy17475 186 IRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVDFEQAKTV 245 (346)
Q Consensus 186 i~~e~~~~~~~~a~~~~~~ls~~~~ypt~~s~~~~i~~a~~~~~ala~~~~~~~~~~e~i 245 (346)
|..+.+...+..+.-|..+--....+-....-|+.+.....++.+++...|+.++..+..
T Consensus 2 I~~~~W~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~~l~~E~~~va~a~g~~~~~~~~~ 61 (124)
T d1ks9a1 2 IRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLR 61 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHHHHHHhHhHHHHHhCCCchHHHhCHHHHHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 344555666666655655555555554445567889999999999999999998765543
No 4
>d1luza_ b.40.4.5 (A:) Viral structural mimic of eIF2alpha {Vaccinia virus [TaxId: 10245]}
Probab=24.96 E-value=24 Score=25.12 Aligned_cols=32 Identities=13% Similarity=0.091 Sum_probs=26.3
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhCC-cEEEEE
Q psy17475 7 PKCFVVGADNVGSRQFQNIRQSLEGL-GVVLMG 38 (346)
Q Consensus 7 ~~v~iv~~~nv~s~qlq~iR~~LR~~-~~~~vg 38 (346)
.-.+++|+-|++.+++.++|++|-|+ ....+.
T Consensus 33 ~ea~l~dy~~~~~d~~~klk~kLVGKtIkvqVI 65 (85)
T d1luza_ 33 FEAILAESVKMHMDRYVEYRDKLVGKTVKVKVI 65 (85)
T ss_dssp SEEEEGGGSSCCHHHHHHHHHHHTTCEEEEEEE
T ss_pred ceEEeeehhhhhhHHHHHHHHHhcCceEEEEEE
Confidence 46889999999999999999999987 344443
No 5
>d2ftsa2 b.103.1.1 (A:318-498) Gephyrin, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=18.25 E-value=32 Score=27.41 Aligned_cols=32 Identities=25% Similarity=0.416 Sum_probs=26.5
Q ss_pred cccccceeeccCCccCccHHHHHhhcCCccee
Q psy17475 282 TDLNDVHILKEGDKVGPSEATLLNMLNISPFS 313 (346)
Q Consensus 282 ~I~~d~~~ik~G~~v~~s~a~lL~~L~I~P~~ 313 (346)
.|.+.-.++++|+++++.+-.+|..+||+=.+
T Consensus 146 D~~~G~~ll~~G~~i~p~~i~~Las~Gi~~V~ 177 (181)
T d2ftsa2 146 DIKRGECVLAKGTHMGPSEIGLLATVGVTEVE 177 (181)
T ss_dssp SBCTTCEEECTTCBCCHHHHHHHHHHTCCEEE
T ss_pred ccCCCCEEECCCCCcCHHHHHHHHHCCCCeEE
Confidence 34556689999999999999999999987443
No 6
>d1wu2a2 b.103.1.1 (A:6-180) Molybdenum cofactor biosynthesis protein MoeA, N-terminal and linker domains {Pyrococcus horikoshii, PH1647 [TaxId: 53953]}
Probab=17.03 E-value=39 Score=26.74 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=27.0
Q ss_pred cccccceeeccCCccCccHHHHHhhcCCccee
Q psy17475 282 TDLNDVHILKEGDKVGPSEATLLNMLNISPFS 313 (346)
Q Consensus 282 ~I~~d~~~ik~G~~v~~s~a~lL~~L~I~P~~ 313 (346)
.+...-.++++|+++++.+-.+|..+||+=.+
T Consensus 142 d~~~G~~ll~~G~~l~~~~i~lLas~Gi~~v~ 173 (175)
T d1wu2a2 142 DVKKGEVVLRKGTILRPQDVAMLKALGIKKVP 173 (175)
T ss_dssp SBCTTCEEECTTCBCCHHHHHHHHHTTCSEEE
T ss_pred ccCCCCEEECCCCCcCHHHHHHHHHCCCCeee
Confidence 45566689999999999999999999987544
No 7
>d1j8ba_ d.222.1.1 (A:) Hypothetical protein HI0442 {Haemophilus influenzae [TaxId: 727]}
Probab=16.51 E-value=59 Score=22.90 Aligned_cols=29 Identities=10% Similarity=0.067 Sum_probs=23.6
Q ss_pred cccCcccccChhHHHHHHHHHHHHHHHhH
Q psy17475 178 IFAPQILDIRPEDLRVKFLEGVATLASVC 206 (346)
Q Consensus 178 ~~~~~~L~i~~e~~~~~~~~a~~~~~~ls 206 (346)
.++|++++-+.|.+...+..|+.+|..-+
T Consensus 50 ~Id~~~l~~d~e~LedlI~~A~N~A~~k~ 78 (92)
T d1j8ba_ 50 DIDPSLMEDDKEMLEDLIAAAFNDAVRRA 78 (92)
T ss_dssp EECGGGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred EECHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 37788887788889889999998887654
No 8
>d2oc5a1 a.25.1.6 (A:20-241) Hypothetical protein PMT1231 {Prochlorococcus marinus [TaxId: 1219]}
Probab=15.60 E-value=31 Score=28.35 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=31.9
Q ss_pred ccCcccccChhHHHHHHHHHHHHHHHhHHhhcCCCccchhh
Q psy17475 179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPH 219 (346)
Q Consensus 179 ~~~~~L~i~~e~~~~~~~~a~~~~~~ls~~~~ypt~~s~~~ 219 (346)
=+..+|.++.|.+.++|+-++..|+ .++||-|.+.+..
T Consensus 180 ~Da~vL~Meke~lvedFmi~Y~eAL---~~IGf~~rei~rm 217 (222)
T d2oc5a1 180 GDAAVLQMDKEDLIEDFLIAYQESL---TEIGFNTREITRM 217 (222)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHH---HHHTCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHH---HHcCCcHHHHHHH
Confidence 4567899999999999999999998 7899988765543
No 9
>d1jjga_ b.40.4.5 (A:) Viral structural mimic of eIF2alpha {Myxoma virus, m156r [TaxId: 10273]}
Probab=14.17 E-value=25 Score=25.64 Aligned_cols=32 Identities=13% Similarity=0.193 Sum_probs=26.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhCC-cEEEEE
Q psy17475 7 PKCFVVGADNVGSRQFQNIRQSLEGL-GVVLMG 38 (346)
Q Consensus 7 ~~v~iv~~~nv~s~qlq~iR~~LR~~-~~~~vg 38 (346)
.-++++|+-|++.+++.++|++|-|+ ....|.
T Consensus 57 ~eail~dY~n~~~dr~~klkkkLVGKTIkVqVI 89 (102)
T d1jjga_ 57 HECILLDYLNYRQDTLDRLKERLVGRVIKTRVV 89 (102)
T ss_dssp CEEEECTTCCSSCCCCCHHHHHHTTCEEEEEEE
T ss_pred ceeeeeehhhhhHHHHHHHHHHhcCceEEEEEE
Confidence 46899999999999999999999987 344443
No 10
>d2nqra2 b.103.1.1 (A:7-177) Molybdenum cofactor biosynthesis protein MoeA, N-terminal and linker domains {Escherichia coli [TaxId: 562]}
Probab=13.80 E-value=56 Score=25.65 Aligned_cols=31 Identities=13% Similarity=0.245 Sum_probs=25.6
Q ss_pred ccccceeeccCCccCccHHHHHhhcCCccee
Q psy17475 283 DLNDVHILKEGDKVGPSEATLLNMLNISPFS 313 (346)
Q Consensus 283 I~~d~~~ik~G~~v~~s~a~lL~~L~I~P~~ 313 (346)
+...-.|+++|+++++.+-.+|..+||+=..
T Consensus 137 ~~~G~~ll~~G~~l~p~~i~~Las~Gi~~V~ 167 (171)
T d2nqra2 137 ISAGAVVFPAGTRLTTAELPVIASLGIAEVP 167 (171)
T ss_dssp BCTTCEEECTTCBCCTTTHHHHHHTTCCEEE
T ss_pred ccCCCEEECCCCCcCHHHHHHHHHCCCCeEE
Confidence 4445588999999999999999999987543
Done!