RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17475
         (346 letters)



>d2aeea1 c.61.1.1 (A:1-208) Orotate PRTase {Streptococcus pyogenes
           [TaxId: 1314]}
          Length = 208

 Score = 29.4 bits (65), Expect = 0.55
 Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 219 HSIVNGFKNVLAVAAATE-VDFEQAKTVKEFLKDPSK 254
            ++ N +  ++AVA     +  +    +K+F +D   
Sbjct: 171 ITLSN-YTELIAVAKLQGYITNDGLHLLKKFKEDQVN 206


>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast
           (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]}
          Length = 458

 Score = 26.8 bits (59), Expect = 4.7
 Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 232 AAATEVDFEQAKTV-KEFLKDPSKFLAAAAPAAAAPAASNRSEERFSRNAETDLNDVHIL 290
           A A+ +D  +  +  KEF  D +  LA           +  ++ R  +      N V + 
Sbjct: 5   AMASSIDISKINSWNKEFQSDLTHQLATTVLKNYNADDALLNKTRLQKQDNRVFNTV-VS 63

Query: 291 KEGDKV 296
            +   V
Sbjct: 64  TDSTPV 69


>d1pzxa_ c.119.1.1 (A:) Hypothetical protein apc36103 {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 287

 Score = 26.5 bits (58), Expect = 4.8
 Identities = 7/29 (24%), Positives = 15/29 (51%)

Query: 284 LNDVHILKEGDKVGPSEATLLNMLNISPF 312
           ++++  L  G ++  + A    +LNI P 
Sbjct: 163 VDNLDYLARGGRISKTAAAFGGLLNIKPL 191


>d2g7oa1 a.241.1.1 (A:60-127) TraM {Escherichia coli [TaxId: 562]}
          Length = 68

 Score = 24.1 bits (52), Expect = 6.9
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 56 GLERLLPHIKGNVGFVFTRGDLNEVREKLLE 86
          G+E L PH+ GN  F +    + ++REK+  
Sbjct: 27 GIESLSPHVSGNSKFEY-ANMVEDIREKVSS 56


>d1knca_ a.152.1.1 (A:) Antioxidant defense protein AhpD
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 174

 Score = 25.6 bits (56), Expect = 8.4
 Identities = 17/56 (30%), Positives = 18/56 (32%)

Query: 228 VLAVAAATEVDFEQAKTVKEFLKDPSKFLAAAAPAAAAPAASNRSEERFSRNAETD 283
           +LA AAAT      A    E     S     AA  AAA    N    R     E  
Sbjct: 38  LLASAAATRNPQVLADIGAEATDHLSAAARHAALGAAAIMGMNNVFYRGRGFLEGR 93


>d1vbga2 c.8.1.1 (A:383-517) Pyruvate phosphate dikinase, central
           domain {Maize (Zea mays) [TaxId: 4577]}
          Length = 135

 Score = 25.0 bits (54), Expect = 9.5
 Identities = 9/46 (19%), Positives = 16/46 (34%)

Query: 251 DPSKFLAAAAPAAAAPAASNRSEERFSRNAETDLNDVHILKEGDKV 296
             +   A  A        S  S  R +   +      H+L+EG+ +
Sbjct: 72  GMTSHAAVVARGWGKCCVSGCSGIRVNDAEKLVTIGGHVLREGEWL 117


>d1nq4a_ a.28.1.1 (A:) Oxytetracycline polyketide synthase acyl
           carrier {Streptomyces rimosus [TaxId: 1927]}
          Length = 95

 Score = 24.6 bits (53), Expect = 9.6
 Identities = 8/30 (26%), Positives = 15/30 (50%)

Query: 238 DFEQAKTVKEFLKDPSKFLAAAAPAAAAPA 267
             E+A T +  ++  +  L  A+P+A   A
Sbjct: 63  AVEKATTPRALIEMTNASLTGASPSAGGAA 92


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.385 

Gapped
Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,227,806
Number of extensions: 56236
Number of successful extensions: 121
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 7
Length of query: 346
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 260
Effective length of database: 1,226,816
Effective search space: 318972160
Effective search space used: 318972160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)