BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17477
(108 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LUL|A Chain A, Solution Nmr Structure Of Ph Domain Of Tyrosine-Protein
Kinase Tec From Homo Sapiens, Northeast Structural
Genomics Consortium (Nesg) Target Hr3504c
Length = 164
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 48 LIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
LIKRSQ KK+ TS NYK+R FVLT L YY+ +E
Sbjct: 21 LIKRSQQKKK--TSPLNYKERLFVLTKSMLTYYEGRAE 56
>pdb|3TFM|A Chain A, Myosin X Ph1n-Ph2-Ph1c Tandem
Length = 228
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSG 90
+ L+QG+L + + S N+K+RWFVL L+Y++ DSE L G
Sbjct: 57 EALKQGWL--HNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEKLKG 104
>pdb|1B55|A Chain A, Ph Domain From Bruton's Tyrosine Kinase In Complex With
Inositol 1,3, 4,5-Tetrakisphosphate
pdb|1B55|B Chain B, Ph Domain From Bruton's Tyrosine Kinase In Complex With
Inositol 1,3, 4,5-Tetrakisphosphate
pdb|2Z0P|A Chain A, Crystal Structure Of Ph Domain Of Bruton's Tyrosine
Kinase
pdb|2Z0P|B Chain B, Crystal Structure Of Ph Domain Of Bruton's Tyrosine
Kinase
pdb|2Z0P|C Chain C, Crystal Structure Of Ph Domain Of Bruton's Tyrosine
Kinase
pdb|2Z0P|D Chain D, Crystal Structure Of Ph Domain Of Bruton's Tyrosine
Kinase
Length = 169
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
++ + +KRSQ KK+ TS N+K+R F+LT L YY+ D E
Sbjct: 3 VILESIFLKRSQQKKK--TSPLNFKKRLFLLTVHKLSYYEYDFE 44
>pdb|1BWN|A Chain A, Ph Domain And Btk Motif From Bruton's Tyrosine Kinase
Mutant E41k In Complex With Ins(1,3,4,5)p4
pdb|1BWN|B Chain B, Ph Domain And Btk Motif From Bruton's Tyrosine Kinase
Mutant E41k In Complex With Ins(1,3,4,5)p4
Length = 169
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
++ + +KRSQ KK+ TS N+K+R F+LT L YY D E
Sbjct: 3 VILESIFLKRSQQKKK--TSPLNFKKRLFLLTVHKLSYYKYDFE 44
>pdb|2DN6|A Chain A, Solution Structure Of The Ph Domain Of Kiaa0640 Protein
From Human
Length = 115
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 14/68 (20%)
Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYY------DTDSEIFL-SGI 91
S +L+QG+++K+ +K N+ +RWFVL + YY D +I L
Sbjct: 5 SSGVLKQGYMMKKGHRRK-------NWTERWFVLKPNIISYYVSEDLKDKKGDILLDENC 57
Query: 92 RLSDLPDQ 99
+ LPD+
Sbjct: 58 CVESLPDK 65
>pdb|1BTK|A Chain A, Ph Domain And Btk Motif From Bruton's Tyrosine Kinase
Mutant R28c
pdb|1BTK|B Chain B, Ph Domain And Btk Motif From Bruton's Tyrosine Kinase
Mutant R28c
Length = 169
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
++ + +KRSQ KK+ TS N+K+ F+LT L YY+ D E
Sbjct: 3 VILESIFLKRSQQKKK--TSPLNFKKCLFLLTVHKLSYYEYDFE 44
>pdb|2DKP|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin
Homology Domain-Containing Protein Family A Member 5
From Human
Length = 128
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYY-DTDSEIFLSGIRL 93
++R+G+L K+ ST +K+RWFVL+ L YY D E L I L
Sbjct: 21 VVRRGWLYKQD------STGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILL 67
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 30.0 bits (66), Expect = 0.39, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 10 WTNPVAAATFLDLEDESGKCGMANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRW 69
W N + AA F L+ A+ +S + L++G++ K + +++RW
Sbjct: 237 WFNALRAARFHYLQVAFPGASDADLVPKLSRNYLKEGYMEKTGPKQ------TEGFRKRW 290
Query: 70 FVLTTKHLIYYDTDSEIFLSG 90
F + + L+Y+ + F G
Sbjct: 291 FTMDDRRLMYFKDPLDAFARG 311
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 30.0 bits (66), Expect = 0.39, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 10 WTNPVAAATFLDLEDESGKCGMANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRW 69
W N + AA F L+ A+ +S + L++G++ K + +++RW
Sbjct: 239 WFNALRAARFHYLQVAFPGASDADLVPKLSRNYLKEGYMEKTGPKQ------TEGFRKRW 292
Query: 70 FVLTTKHLIYYDTDSEIFLSG 90
F + + L+Y+ + F G
Sbjct: 293 FTMDDRRLMYFKDPLDAFARG 313
>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human
Length = 117
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYY-DTDSEIFLSGIRL 93
+ + G+L K++ S+ + +RWFVL + L YY D E L I L
Sbjct: 11 VTKAGWLFKQA------SSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPL 57
>pdb|2YRY|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin
Homology Domain-Containing Family A Member 6 From Human
Length = 122
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYY-DTDSEIFLSGIRL 93
+ + G+L K++ S+ + +RWFVL + L YY D E L I L
Sbjct: 22 VTKAGWLFKQA------SSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPL 68
>pdb|1U27|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology
Domain In Complex With Ins(1,3,4,5)p4
pdb|1U29|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology
Domain In Complex With Ins(1,4,5)p3
Length = 129
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 8/44 (18%)
Query: 44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIY--YDTDSE 85
R+G+L+K + + +K+RWF+LT L Y Y TD E
Sbjct: 13 REGWLLKLGGGRVK------TWKRRWFILTDNCLYYFEYTTDKE 50
>pdb|1U2B|A Chain A, Triglycine Variant Of The Grp1 Pleckstrin Homology
Domain Unliganded
Length = 138
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 8/44 (18%)
Query: 44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIY--YDTDSE 85
R+G+L+K + + +K+RWF+LT L Y Y TD E
Sbjct: 17 REGWLLKLGGGRVK------TWKRRWFILTDNCLYYFEYTTDKE 54
>pdb|3A8N|A Chain A, Crystal Structure Of The Tiam1 Phccex Domain
Length = 279
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 47 FLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLPDQ 99
FL+ + +NKK S + +K W L L +Y+TD SGI + +P
Sbjct: 22 FLVHK-KNKKVESATRRKWKHYWVSLKGCTLFFYETDGR---SGIDHNSVPKH 70
>pdb|1FHW|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
pdb|1FHW|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
Length = 129
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 9/44 (20%)
Query: 44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIY--YDTDSE 85
R+G+L+K K +K+RWF+LT L Y Y TD E
Sbjct: 5 REGWLLKLGGRVK-------TWKRRWFILTDNCLYYFEYTTDKE 41
>pdb|1FGY|A Chain A, Grp1 Ph Domain With Ins(1,3,4,5)p4
pdb|1FGZ|A Chain A, Grp1 Ph Domain (Unliganded)
Length = 127
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 9/44 (20%)
Query: 44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIY--YDTDSE 85
R+G+L+K K +K+RWF+LT L Y Y TD E
Sbjct: 7 REGWLLKLGGRVK-------TWKRRWFILTDNCLYYFEYTTDKE 43
>pdb|1FHX|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
pdb|1FHX|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 129
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 9/44 (20%)
Query: 44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIY--YDTDSE 85
R+G+L+K K +K+RWF+LT L Y Y TD E
Sbjct: 5 REGWLLKLGGRVK-------TWKRRWFILTDNCLYYFEYTTDKE 41
>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R0D|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 9/44 (20%)
Query: 44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIY--YDTDSE 85
R+G+L+K K +K+RWF+LT L Y Y TD E
Sbjct: 215 REGWLLKLGGRVK-------TWKRRWFILTDNCLYYFEYTTDKE 251
>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R09|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 9/44 (20%)
Query: 44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIY--YDTDSE 85
R+G+L+K K +K+RWF+LT L Y Y TD E
Sbjct: 215 REGWLLKLGGRVK-------TWKRRWFILTDNCLYYFEYTTDKE 251
>pdb|1UPQ|A Chain A, Crystal Structure Of The Pleckstrin Homology (Ph) Domain
Of Pepp1
pdb|1UPR|A Chain A, Crystal Structure Of The Pepp1 Pleckstrin Homology
Domain In Complex With Inositol
1,3,4,5-Tetrakisphosphate
Length = 123
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 65 YKQRWFVLTTKHLIYY-DTDSEIFLSGIRL 93
+K+RWFVL+ L YY D+ E L + L
Sbjct: 28 WKRRWFVLSGHCLFYYKDSREESVLGSVLL 57
>pdb|3TEJ|A Chain A, Crystal Structure Of A Domain Fragment Involved In Peptide
Natural Product Biosynthesis
pdb|3TEJ|B Chain B, Crystal Structure Of A Domain Fragment Involved In Peptide
Natural Product Biosynthesis
Length = 329
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 44 RQGFLIKR--SQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLS 89
R+ FL + S + + F+T NY +LTT H + +D + +F++
Sbjct: 230 REAFLAAQQGSTSTELFTTIEGNYADAVRLLTTAHSVPFDGKATLFVA 277
>pdb|2ROQ|A Chain A, Solution Structure Of The Thiolation-Thioesterase
Di-Domain Of Enterobactin Synthetase Component F
Length = 343
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 44 RQGFLIKR--SQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLS 89
R+ FL + S + + F+T NY +LTT H + +D + +F++
Sbjct: 236 REAFLAAQQGSTSTELFTTIEGNYADAVRLLTTAHSVPFDGKATLFVA 283
>pdb|1DYN|A Chain A, Crystal Structure At 2.2 Angstroms Resolution Of The
Pleckstrin Homology Domain From Human Dynamin
pdb|1DYN|B Chain B, Crystal Structure At 2.2 Angstroms Resolution Of The
Pleckstrin Homology Domain From Human Dynamin
Length = 125
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 32 ANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
N+D+++ ++R+G+L + K+ WFVLT ++L +Y D E
Sbjct: 5 GNQDEIL---VIRKGWLTINN-----IGIMKGGSKEYWFVLTAENLSWYKDDEE 50
>pdb|1V89|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Human Kiaa0053 Protein
Length = 118
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Query: 63 NNYKQRWFVLTTKHLIYYDTDSE------IFLSGIRLSDL 96
N++QR+FVL + L YY + + ++L G + ++
Sbjct: 22 KNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEI 61
>pdb|2DYN|A Chain A, Dynamin (Pleckstrin Homology Domain) (Dynph)
pdb|2DYN|B Chain B, Dynamin (Pleckstrin Homology Domain) (Dynph)
Length = 122
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 32 ANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
N+D+++ ++R+G+L + K+ WFVLT ++L +Y D E
Sbjct: 5 GNQDEIL---VIRKGWLTINN-----IGIMKGGSKEYWFVLTAENLSWYKDDEE 50
>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin
Length = 772
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 32 ANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
N+D+++ ++R+G+L + K+ WFVLT ++L +Y D E
Sbjct: 533 GNQDEIL---VIRKGWLTINN-----IGIMKGGSKEYWFVLTAENLSWYKDDEE 578
>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1
Length = 743
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 32 ANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
N+D+++ ++R+G+L + K+ WFVLT ++L +Y D E
Sbjct: 510 GNQDEIL---VIRKGWLTINN-----IGIMKGGSKEYWFVLTAENLSWYKDDEE 555
>pdb|3ZYS|C Chain C, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|F Chain F, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 113
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 66 KQRWFVLTTKHLIYYDTDSE 85
K+ WFVLT ++L +Y D E
Sbjct: 22 KEYWFVLTAENLSWYKDDEE 41
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,413,055
Number of Sequences: 62578
Number of extensions: 122567
Number of successful extensions: 228
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 203
Number of HSP's gapped (non-prelim): 34
length of query: 108
length of database: 14,973,337
effective HSP length: 72
effective length of query: 36
effective length of database: 10,467,721
effective search space: 376837956
effective search space used: 376837956
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)