RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17477
(108 letters)
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc
binding, X-linked agammaglobulinemia, tyrosine-protein
kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB:
1b55_A* 2z0p_A* 1bwn_A*
Length = 169
Score = 63.4 bits (153), Expect = 5e-14
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
++ + +KRSQ KK+ S N +K+ F+LT L YY+ D E
Sbjct: 2 AVILESIFLKRSQQKKKTSPLN--FKKCLFLLTVHKLSYYEYDFE 44
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, transferase; NMR {Homo sapiens}
Length = 164
Score = 63.2 bits (153), Expect = 5e-14
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 32 ANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDS------- 84
+ ++ + + + LIKRSQ KK+ S NYK+R FVLT L YY+ +
Sbjct: 5 HHHHSHMNFNTILEEILIKRSQQKKKTS--PLNYKERLFVLTKSMLTYYEGRAEKKYRKG 62
Query: 85 EIFLSGIR 92
I +S I+
Sbjct: 63 FIDVSKIK 70
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 115
Score = 53.2 bits (128), Expect = 1e-10
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSG-IRLSD 95
S +L+QG+++K+ +K N+ +RWFVL + YY ++ G I L +
Sbjct: 5 SSGVLKQGYMMKKGHRRK-------NWTERWFVLKPNIISYYVSEDLKDKKGDILLDE 55
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain,
phosphatidylinositol binding, structural genomics; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 118
Score = 50.9 bits (122), Expect = 1e-09
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 13/66 (19%)
Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE------IFLSGIR 92
S ++ G+L K+ K N++QR+FVL + L YY + + ++L G
Sbjct: 5 SSGPIKMGWLKKQRSIVK-------NWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCT 57
Query: 93 LSDLPD 98
+ ++
Sbjct: 58 IKEIAT 63
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein,
lipid degradation, phosphatidylinositol (3,
4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo
sapiens} SCOP: b.55.1.1
Length = 125
Score = 50.9 bits (122), Expect = 1e-09
Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGI 91
+++ G+ +K+ K N+K+R+F L + Y+ ++ E +
Sbjct: 11 DSAVIKAGYCVKQGAVMK-------NWKRRYFQLDENTIGYFKSELEKEPLRV 56
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Length = 228
Score = 52.3 bits (125), Expect = 1e-09
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSG-IRLSD 95
+ L+QG+L S N+K+RWFVL L+Y++ DSE L G + +
Sbjct: 55 KQEALKQGWLHNNGGGSSTLS--RRNWKKRWFVLRQSKLMYFENDSEEKLKGTVEVRS 110
Score = 28.8 bits (64), Expect = 0.27
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 45 QGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSG 90
FL N++K+RW VL + +++ + E G
Sbjct: 24 HSFLYMNGGL-------MNSWKRRWCVLKDETFLWFRSKQEALKQG 62
>2d9y_A Pleckstrin homology domain-containing protein family A member 6;
PH domain, PEPP-3, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 117
Score = 50.5 bits (121), Expect = 1e-09
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE------IFLSGIR 92
+ + + G+L K++ + + + +RWFVL + L YY + E I L R
Sbjct: 8 NAPVTKAGWLFKQASSGVK------QWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFR 61
Query: 93 LS 94
++
Sbjct: 62 VA 63
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 113
Score = 50.0 bits (120), Expect = 2e-09
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 13/67 (19%)
Query: 38 ISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE------IFLSGI 91
+ +R+G+L+K+ +K W VL + +Y S+ I L G
Sbjct: 1 MEPKRIREGYLVKKGSVFN-------TWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGS 53
Query: 92 RLSDLPD 98
L+
Sbjct: 54 TLTSPCQ 60
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH
domain, signaling protein; 1.70A {Homo sapiens} SCOP:
b.55.1.1
Length = 108
Score = 49.7 bits (119), Expect = 2e-09
Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE------IFLSGIRLS 94
+++QG+L K+S++ F + +++RW V++ YY + + G +
Sbjct: 2 SVIKQGYLEKKSKDHSFFG---SEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVR 58
Query: 95 DLPD 98
P
Sbjct: 59 MAPH 62
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH
domains (ARAP) 2, PH domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 115
Score = 49.3 bits (118), Expect = 4e-09
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSG-IRLSD 95
S ++ G+L K S KR +++RW + YY+ + E++ G I LS
Sbjct: 5 SSGKVKSGWLDKLSPQGKR------MFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSA 56
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Length = 129
Score = 49.4 bits (118), Expect = 4e-09
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 16/81 (19%)
Query: 26 SGKCGMANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLT--TKHLIYYDTD 83
SG G+ K++ I++QG L+K+ +K N+K R F+L +L YYD
Sbjct: 3 SGSSGVILKEEF-RGVIIKQGCLLKQGHRRK-------NWKVRKFILREDPAYLHYYDPA 54
Query: 84 SE------IFLSGIRLSDLPD 98
I L G ++ +
Sbjct: 55 GAEDPLGAIHLRGCVVTSVES 75
>2yry_A Pleckstrin homology domain-containing family A member 6; PH
domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 122
Score = 49.0 bits (117), Expect = 6e-09
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE------IFLSGIR 92
+ + + G+L K++ + + + +RWFVL + L YY + E I L R
Sbjct: 19 NAPVTKAGWLFKQASSGVK------QWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFR 72
Query: 93 LS 94
++
Sbjct: 73 VA 74
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4;
pleckstrin homoloy domain, signal transduction,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 109
Score = 47.8 bits (114), Expect = 1e-08
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 13/66 (19%)
Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE------IFLSGIR 92
S G+L + +KK +K WFV+ K L Y + L G
Sbjct: 5 SSGSTMSGYLYRSKGSKK-------PWKHLWFVIKNKVLYTYAASEDVAALESQPLLGFT 57
Query: 93 LSDLPD 98
++ + D
Sbjct: 58 VTLVKD 63
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid
binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2i5c_A* 1zm0_A
Length = 109
Score = 47.8 bits (114), Expect = 1e-08
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 15/69 (21%)
Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLT--TKHLIYYDTDSE------IFLSG 90
+ I++QG L+K+ +K N+K R F+L +L YYD I L G
Sbjct: 4 TGVIIKQGCLLKQGHRRK-------NWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRG 56
Query: 91 IRLSDLPDQ 99
++ +
Sbjct: 57 CVVTSVESN 65
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides;
pleckstrin, inositol tetrakisphosphate signal
transduction protein, adaptor protein; HET: 4IP; 1.80A
{Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Length = 126
Score = 47.8 bits (114), Expect = 2e-08
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 7/53 (13%)
Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGI 91
++G+L K+ K +K RWF L L Y+ I
Sbjct: 15 PSLGTKEGYLTKQGGLVK-------TWKTRWFTLHRNELKYFKDQMSPEPIRI 60
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 129
Score = 47.2 bits (112), Expect = 3e-08
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 16/69 (23%)
Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLT--TKHLIYYDTDSE-------IFLS 89
S +++QG+L K+ +K N+K R FVL L YYD E L
Sbjct: 15 SGTVVKQGYLAKQGHKRK-------NWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLR 67
Query: 90 GIRLSDLPD 98
G +S L D
Sbjct: 68 GSLVSALED 76
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM,
artefactual dimerization induced by V derived sequence,
signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1
PDB: 1u5g_A
Length = 148
Score = 46.8 bits (111), Expect = 5e-08
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 40 DDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSG-IRLSD 95
+++ G+L KR ++ +++RW L+ YY +D + G +
Sbjct: 15 PFVIKAGYLEKRRKDHSFLG---FEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDG 68
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH
domain, pleckstrin homology domain-containing protein
family A member 5; NMR {Homo sapiens}
Length = 128
Score = 46.3 bits (110), Expect = 6e-08
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE------IFLSGIR 92
+ ++R+G+L K+ ST +K+RWFVL+ L YY + E I L +
Sbjct: 18 NAPVVRRGWL------YKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQ 71
Query: 93 LSDLPDQ 99
++ L +
Sbjct: 72 IALLTSE 78
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology
domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: b.55.1.1
Length = 117
Score = 45.9 bits (109), Expect = 7e-08
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVL--TTKHLIYYDTDSEIFLSG-IRLSD 95
S +G L K+ K +K RWFVL T L YYD + G I L++
Sbjct: 5 SSGRSYEGILYKKGAFMK-------PWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAE 57
>2d9v_A Pleckstrin homology domain-containing protein family B member 1;
PH domain, phret1, structural genomics, NPPSFA; NMR
{Mus musculus}
Length = 130
Score = 46.1 bits (109), Expect = 8e-08
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLT-TKHLIYYDTDSE 85
S ++R G+L ++S + +K+ WF L L YY ++
Sbjct: 5 SSGLVRGGWLWRQSSILR-------RWKRNWFALWLDGTLGYYHDETA 45
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus
musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A*
1fhx_A* 1u29_A* 1u27_A*
Length = 127
Score = 45.8 bits (108), Expect = 9e-08
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 13/65 (20%)
Query: 41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE------IFLSGIRLS 94
+ R+G+L+K K +K+RWF+LT L Y++ ++ I L + +
Sbjct: 4 NPDREGWLLKLGGRVK-------TWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIR 56
Query: 95 DLPDQ 99
++ D
Sbjct: 57 EVLDP 61
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling
protein; HET: I4C; 1.45A {Saccharomyces cerevisiae}
PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Length = 120
Score = 45.0 bits (106), Expect = 2e-07
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 16/66 (24%)
Query: 43 LRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE---------IFLSGIRL 93
++ GFL +RS+ K +Y + ++VLT L + T + LS +
Sbjct: 7 IKSGFLERRSKFLK-------SYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECTV 59
Query: 94 SDLPDQ 99
++ +
Sbjct: 60 TEHSRK 65
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH
domain, signaling protein; 2.60A {Mus musculus} SCOP:
b.55.1.1 PDB: 2otx_A
Length = 211
Score = 45.1 bits (106), Expect = 4e-07
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE------IFLSGIR 92
+++ G+L KR ++ +++RW L+ YY +D + + G
Sbjct: 105 FVIKAGYLEKRRKDHSFLG---FEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYD 159
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction;
1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Length = 123
Score = 43.6 bits (103), Expect = 6e-07
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 12/58 (20%)
Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE------IFLSGIRL 93
+ +G+L K+ + R +K+RWFVL+ L YY E + L +
Sbjct: 11 VHIRGWLHKQDSSGLR------LWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNI 62
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport,
pleckstrin homology domain, phosphatidylinositol
binding, structural genomics; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 130
Score = 43.2 bits (101), Expect = 1e-06
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 14/66 (21%)
Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE------IFLSGIR 92
S I+ +L R K ++ + W VL L+ Y T + L+
Sbjct: 5 SSGIVMADWLKIRGTLK--------SWTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACE 56
Query: 93 LSDLPD 98
+ + P
Sbjct: 57 IIERPS 62
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 149
Score = 43.2 bits (101), Expect = 2e-06
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE-IFLSGIRLSDL 96
+ +GFL+ + + Y+ W L L +Y I++ + + DL
Sbjct: 18 LYFEGFLLIKRSGYR-------EYEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDL 66
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain,
zizimin1, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 150
Score = 42.7 bits (100), Expect = 2e-06
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 7/59 (11%)
Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKH------LIYYDTDSEIFLSGI 91
I + G+L K + S + ++K+R+F L Y D G
Sbjct: 15 KGGITKHGWLYKGN-MNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGS 72
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 43.5 bits (102), Expect = 2e-06
Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 37 LISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSG 90
+S + L++G++ K + +++RWF + + L+Y+ + F G
Sbjct: 264 KLSRNYLKEGYMEKTGPKQT------EGFRKRWFTMDDRRLMYFKDPLDAFARG 311
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA,
SKIP, complex, virulence, cytoplasm, membrane,
polymorphism, signaling protein; 2.60A {Homo sapiens}
PDB: 3hw2_B
Length = 112
Score = 42.1 bits (99), Expect = 2e-06
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGI 91
++G L ++ ++K + VL+ L Y +++
Sbjct: 2 KEGMLHYKAGTSY---LGKEHWKTCFVVLSNGILYQYPDRTDVIPLLS 46
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel
beta sheet, protein transport; HET: SEP EDO; 1.00A
{Homo sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 41.8 bits (98), Expect = 3e-06
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLT-TKHLIYYDTDSE 85
S ++ G+L+++S K +K+ WF L HLIYYD +
Sbjct: 2 SMAFVKSGWLLRQSTILK-------RWKKNWFDLWSDGHLIYYDDQTR 42
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin
homology domain, PKB, AKT, phosphoinositide,
serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo
sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A*
2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Length = 125
Score = 41.8 bits (98), Expect = 3e-06
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
Query: 40 DDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLT-TKHLIYYDTDSE 85
I+++G+L KR + K ++ R+F+L I Y +
Sbjct: 6 VAIVKEGWLHKRGEYIK-------TWRPRYFLLKNDGTFIGYKERPQ 45
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology,
lipid transport; NMR {Homo sapiens}
Length = 94
Score = 40.1 bits (94), Expect = 8e-06
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
+ R G L K + ++ RW VL L YY ++ E
Sbjct: 1 VERCGVLSKWTNYIH-------GWQDRWVVLKNNALSYYKSEDE 37
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; PH domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 40.2 bits (94), Expect = 9e-06
Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRL 93
++G+L+K+S ++ +++R + L S + + L
Sbjct: 12 KKGYLLKKSDGIRK------VWQRRKCSVKNGILTISHATSNRQPAKLNL 55
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 40.5 bits (95), Expect = 1e-05
Identities = 13/54 (24%), Positives = 16/54 (29%), Gaps = 8/54 (14%)
Query: 45 QGFLIKRSQNKKRFSTSNNNYKQRWFVL--TTKHLIYYDTDSEIFLSG-IRLSD 95
G+L K +K RWF L Y T + I LS
Sbjct: 11 CGYLSKFGG-----KGPIRGWKSRWFFYDERKCQLYYSRTAQDANPLDSIDLSS 59
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK
repeat, cytoplasm, GTP-binding, GTPase activation,
metal-binding, nucleotide-binding; NMR {Homo sapiens}
Length = 128
Score = 40.2 bits (93), Expect = 1e-05
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
++Q FL+KRS N N +K+++ L++ + Y
Sbjct: 3 IPIKQSFLLKRSGNS-----LNKEWKKKYVTLSSNGFLLYHPSIN 42
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Length = 125
Score = 40.0 bits (93), Expect = 1e-05
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 11/66 (16%)
Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE------IFLSGIR 92
++R+G+L + + K+ WFVLT ++L +Y D E + + ++
Sbjct: 9 EILVIRKGWLTINNIGIMK-----GGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLK 63
Query: 93 LSDLPD 98
L D+
Sbjct: 64 LRDVEK 69
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21,
myristate, transport, nucleotide-binding, rhogap
protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dhj_A
Length = 168
Score = 38.6 bits (89), Expect = 8e-05
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 41 DILRQGFLIKRSQ---NKKRFSTSNNNYKQRWFVLTTKHLIYY 80
D ++G+L R KR S +KQ + VL L Y
Sbjct: 2 DAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLY 44
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 107
Score = 37.5 bits (87), Expect = 9e-05
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 16/68 (23%)
Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE-------IFLSGI 91
S + +L N+ +K RW + HL +Y + + L G
Sbjct: 5 SSGLETSSYLNVLV---------NSQWKSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGC 55
Query: 92 RLSDLPDQ 99
+ P
Sbjct: 56 EVVPDPSP 63
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain,
protein binding, structural genomics, NPPSFA; 1.70A
{Mus musculus}
Length = 126
Score = 37.3 bits (86), Expect = 2e-04
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
+G L +++ K+ + +++ + W VL+ L+YY S
Sbjct: 3 MEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSL 44
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1;
guanine nucleotide exchange factor, guanine-nucleotide
releasing factor, lipoprotein; 4.50A {Mus musculus}
Length = 279
Score = 37.6 bits (86), Expect = 3e-04
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 38 ISDDILRQGFLIKRS-----QNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
+ + G L ++ +NKK S + +K W L L +Y+TD
Sbjct: 7 AQGTVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGR 59
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH
domain, PIP2 binding site, structural genomics; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 126
Score = 36.4 bits (84), Expect = 3e-04
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 16/66 (24%)
Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE----------IFL 88
S + G+L +N + +K+R+FVL + S + L
Sbjct: 5 SSGMKHSGYLWAIGKNVWK------RWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQL 58
Query: 89 SGIRLS 94
G +
Sbjct: 59 DGYTVD 64
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide
complex, pleckstrin homology domain, ligand binding
protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A
2p0h_A*
Length = 129
Score = 36.4 bits (84), Expect = 3e-04
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 32 ANKDDLISDDILRQGFLIKR--SQNKKRFSTSNNNYKQRWFVLTTKHLIYY 80
+ + + S ++ + G L +Q ++ N+ W VLT L++Y
Sbjct: 2 SRRASVGSHEVEKSGLLNMTKIAQGGRK---LRKNWGPSWVVLTGNSLVFY 49
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine
nucleotide exchange factor, alternative splicing, cell
projection, coiled coil; 2.10A {Mus musculus} PDB:
3a8q_A
Length = 263
Score = 37.3 bits (85), Expect = 3e-04
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 5/74 (6%)
Query: 40 DDILRQGFLIKRSQ-----NKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLS 94
+ + G+L + +K + +KQ W L L++Y+T +
Sbjct: 9 GVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAP 68
Query: 95 DLPDQIFHDILVPA 108
I+
Sbjct: 69 RCALFAEDSIVQSV 82
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Length = 134
Score = 36.2 bits (83), Expect = 4e-04
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 38 ISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
++ + +GFL + +RW VL+ + Y+ +
Sbjct: 1 VNSSVEERGFLTIFEDVSGF-----GAWHRRWCVLSGNCISYWTYPDD 43
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH
domain, lipid-binding, membrane, membrane protein;
1.90A {Homo sapiens} PDB: 2kcj_A
Length = 103
Score = 35.6 bits (82), Expect = 5e-04
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 45 QGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
+G L K + ++ RWFVL L YYD+ +
Sbjct: 2 EGVLYKWTNYLT-------GWQPRWFVLDNGILSYYDSQDD 35
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 137
Score = 35.0 bits (80), Expect = 0.001
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 56 KRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
+ + Y+Q W V L YY + E
Sbjct: 19 RPRKLTLKGYRQHWVVFKETTLSYYKSQDE 48
>2d9x_A Oxysterol binding protein-related protein 11; PH domain,
OSBP-related protein 11, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 120
Score = 34.5 bits (79), Expect = 0.001
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 9/41 (21%)
Query: 45 QGFLIKRSQNKKRFSTSNNNYKQRWFVL--TTKHLIYYDTD 83
G+L+K + ++ R+FVL L Y+ +
Sbjct: 11 YGYLMKYTNLVT-------GWQYRFFVLNNEAGLLEYFVNE 44
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the
pleckstrin homology domain, structural genomics; NMR
{Mus musculus} SCOP: b.55.1.1
Length = 126
Score = 34.2 bits (78), Expect = 0.002
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 14/61 (22%)
Query: 46 GFLIKRSQNKKRFSTSNNNYKQRWFVLTTKH--LIYYDTDSE------IFLSGIRLSDLP 97
GFL + +R+F+L T+ L++Y + + + ++L+ +
Sbjct: 19 GFLDIEDNENSG------KFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYIS 72
Query: 98 D 98
Sbjct: 73 K 73
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal
transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2
b.55.1.2 PDB: 1irs_A*
Length = 264
Score = 34.9 bits (79), Expect = 0.002
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 24/69 (34%)
Query: 40 DDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVL-------TTKHLIYYDTDSEIFLSG-- 90
D+ + G+L K + +R+FVL L YY+ + +
Sbjct: 8 SDVRKVGYLRKPK-----------SMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSA 56
Query: 91 ----IRLSD 95
I L
Sbjct: 57 PKRSIPLES 65
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin
homology domain, structural genomics; NMR {Mus
musculus} SCOP: b.55.1.1
Length = 132
Score = 33.8 bits (77), Expect = 0.003
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
Query: 40 DDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE---------IFLSG 90
DDI G +I SQ + + ++R+F+L + LI I ++G
Sbjct: 20 DDIKTLGNVIFMSQVVMQ-HGACEEKEERYFLLFSSVLIMLSASPRMSGFMYQGKIPIAG 78
Query: 91 IRLSDLPD 98
+ ++ L +
Sbjct: 79 MVVNRLDE 86
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator,
pleckstrin homology domain, STR genomics consortium,
SGC, hydrolase activator; HET: CIT; 1.42A {Homo
sapiens}
Length = 124
Score = 33.3 bits (76), Expect = 0.004
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 39 SDDILRQGFLIKR--SQNKKRFSTSNNNYKQRWFVLTTKHLIYY 80
+ + + G L + + KR ++ W VL L ++
Sbjct: 5 TKTLDKAGVLHRTKTADKGKR--LRKKHWSASWTVLEGGVLTFF 46
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding,
integrin activation, cytoplas membrane, cell adhesion;
HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*
Length = 173
Score = 32.0 bits (72), Expect = 0.020
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 51 RSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLPD 98
+ K+ + YKQ W + Y + E + +L
Sbjct: 54 KVFKPKKLTL--KGYKQYWCTFKDTSISCYKSKEESSGTPAHQMNLRG 99
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP:
b.55.1.1
Length = 122
Score = 31.5 bits (71), Expect = 0.023
Identities = 7/56 (12%), Positives = 19/56 (33%), Gaps = 7/56 (12%)
Query: 39 SDDILRQGFLIKR----SQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSG 90
+G++ ++ S KK SN ++ + + + +Y +
Sbjct: 5 GAGEGHEGYVTRKHEWDSTTKK---ASNRSWDKVYMAAKAGRISFYKDQKGYKSNP 57
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural
genomics, spectrin beta chain, brain 2, KIAA0302; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 123
Score = 31.5 bits (71), Expect = 0.024
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 7/74 (9%)
Query: 39 SDDILRQGFLIKR----SQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLS 94
S +G L ++ + KK +N +++ + VL L +Y
Sbjct: 5 SSGEQMEGMLCRKQEMEAFGKK---AANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHG 61
Query: 95 DLPDQIFHDILVPA 108
++P + A
Sbjct: 62 EVPVSLARAQGSVA 75
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus
musculus} SCOP: b.55.1.1 PDB: 1mph_A
Length = 106
Score = 28.8 bits (64), Expect = 0.15
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 45 QGFLIKR----SQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLPDQI 100
+GFL ++ + NKK S+ ++ + V+ + + +Y S++P +
Sbjct: 2 EGFLNRKHEWEAHNKK---ASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSL 58
Query: 101 FHDILVPA 108
I A
Sbjct: 59 KEAICEVA 66
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition,
allosteric inhibitor, kinase inhibitor hydrophobic
collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB:
3o96_A*
Length = 446
Score = 27.8 bits (62), Expect = 0.63
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTK-HLIYY 80
I+++G+L KR + K ++ R+F+L I Y
Sbjct: 6 IVKEGWLHKRGEYIK-------TWRPRYFLLKNDGTFIGY 38
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH,
RAS-associating, pleckstrin-homology, adapter
phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Length = 256
Score = 27.5 bits (60), Expect = 1.00
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 7/36 (19%)
Query: 45 QGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYY 80
QGFL + KK + K+ + L L
Sbjct: 135 QGFLHVKELGKKSW-------KKLYVCLRRSGLYCS 163
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1;
transferase, PKB, pleckstrin homology domain, inositol
phosphate, signal transduction; HET: 4PT; 1.45A {Homo
sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Length = 151
Score = 27.1 bits (59), Expect = 1.1
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 15/54 (27%)
Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTT-KHLIYYDTDS-----EIFLS 89
IL+ G + KR K F ++R +LT HL Y D + EI S
Sbjct: 52 ILKMGPVDKR---KGLF------ARRRQLLLTEGPHLYYVDPVNKVLKGEIPWS 96
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil,
cytoplasm, membrane, metal-binding, nucleotide-binding,
phorbol-ester binding; NMR {Rattus norvegicus}
Length = 117
Score = 26.5 bits (58), Expect = 1.4
Identities = 12/59 (20%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 45 QGFL-IKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLPDQIFH 102
+G+L + N K+F + +++ ++++K +++YD++ + S + D++FH
Sbjct: 4 EGWLSLPVRNNTKKF-----GWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDKLFH 57
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA
complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP:
c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A*
2pyj_A* 2pyl_A* 2pzs_A*
Length = 575
Score = 26.4 bits (57), Expect = 2.3
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 75 KHLIYYDTDSEIFLSGIRLSDLPDQIFHD 103
+IY DTDS I L+G + D+ I
Sbjct: 450 DRIIYCDTDS-IHLTGTEIPDVIKDIVDP 477
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding,
cytoplasm, ligase, nucleotide-binding, phosphoprotein,
polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Length = 521
Score = 25.6 bits (57), Expect = 3.8
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 17 ATFLDLEDESGKC-GMANKDDLISDD 41
F DL E K MAN + S++
Sbjct: 74 LIFYDLRGEGVKLQVMANSRNYKSEE 99
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure,
CTP:phosphocholine cytidylyltransferase; 1.50A
{Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Length = 254
Score = 24.7 bits (54), Expect = 7.2
Identities = 6/39 (15%), Positives = 13/39 (33%)
Query: 37 LISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTK 75
+ +D+ L + FS + WF++
Sbjct: 124 IDADNYLFKNMFRNDLTRSTYFSVYREDCTNEWFLVYGD 162
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 24.9 bits (54), Expect = 7.2
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 12/75 (16%)
Query: 35 DDLISDDIL-RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE-------- 85
+D +D+L R LI + + + +QR F L LIY D
Sbjct: 320 EDWEGEDLLVRSSELIYSGELTRV-TQPQAKSQQRMFFLFDHQLIYCKKDLLRRDVLYYK 378
Query: 86 --IFLSGIRLSDLPD 98
+ + G+ + DL D
Sbjct: 379 GRLDMDGLEVVDLED 393
>3ott_A Two-component system sensor histidine kinase; beta-propeller,
beta-sandwich, transcription; HET: TBR; 2.30A
{Bacteroides thetaiotaomicron}
Length = 758
Score = 24.6 bits (54), Expect = 9.4
Identities = 4/43 (9%), Positives = 13/43 (30%), Gaps = 3/43 (6%)
Query: 64 NYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLPDQIFHDILV 106
+Q ++ T +L Y + + + + +
Sbjct: 200 TTRQCVWIGTEGYLFQYFPSTGQI---KQTEAFHNNSIKSLAL 239
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.408
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,663,838
Number of extensions: 82257
Number of successful extensions: 273
Number of sequences better than 10.0: 1
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 68
Length of query: 108
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 36
Effective length of database: 4,691,481
Effective search space: 168893316
Effective search space used: 168893316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)