RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17477
(108 letters)
>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 169
Score = 56.4 bits (135), Expect = 6e-12
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
++ + +KRSQ KK+ S N+K+ F+LT L YY+ D E
Sbjct: 3 VILESIFLKRSQQKKKTSPL--NFKKCLFLLTVHKLSYYEYDFE 44
>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein
SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 44.5 bits (104), Expect = 8e-08
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLPDQIF 101
+++QG+L K+S++ F + +++RW V++ YY + G L
Sbjct: 1 VIKQGYLEKKSKDHSFFG---SEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRM 57
Query: 102 HD 103
Sbjct: 58 AP 59
>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 41.7 bits (97), Expect = 8e-07
Identities = 10/50 (20%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGI 91
+++ G+ +K+ K N+K+R+F L + Y+ ++ E +
Sbjct: 3 VIKAGYCVKQGAVMK-------NWKRRYFQLDENTIGYFKSELEKEPLRV 45
>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 209
Score = 42.2 bits (98), Expect = 2e-06
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 40 DDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSG 90
+++ G+L KR ++ +++RW L+ YY +D + G
Sbjct: 102 PFVIKAGYLEKRRKDHSFLGF---EWQKRWCALSKTVFYYYGSDKDKQQKG 149
>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 39.9 bits (92), Expect = 6e-06
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGI 91
S ++ G+L K+ K N++QR+FVL + L YY + + G
Sbjct: 5 SSGPIKMGWLKKQRSIVK-------NWQQRYFVLRAQQLYYYKDEEDTKPQGC 50
>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and
3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens)
[TaxId: 9606]}
Length = 100
Score = 38.6 bits (89), Expect = 1e-05
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 7/48 (14%)
Query: 44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGI 91
++G+L K+ K +K RWF L L Y+ I
Sbjct: 6 KEGYLTKQGGLVK-------TWKTRWFTLHRNELKYFKDQMSPEPIRI 46
>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 116
Score = 39.1 bits (90), Expect = 1e-05
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 38 ISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
+S +++QG+L K+ +K N+K R FVL + D
Sbjct: 7 LSGTVVKQGYLAKQGHKRK-------NWKVRRFVLRKDPAFLHYYDPS 47
>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 104
Score = 38.4 bits (88), Expect = 2e-05
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLPDQIF 101
I++QG L+K+ +K N+K R F+L + D + L +
Sbjct: 2 IIKQGCLLKQGHRRK-------NWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVV 54
Query: 102 HDI 104
+
Sbjct: 55 TSV 57
>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 38.4 bits (88), Expect = 2e-05
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTD 83
+++ G+L KR ++ +++RW L+ YY +D
Sbjct: 8 FVIKAGYLEKRRKDHSFLGF---EWQKRWCALSKTVFYYYGSD 47
>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 113
Score = 37.6 bits (86), Expect = 3e-05
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGI 91
+R+G+L+K+ +K W VL + +Y S+ G+
Sbjct: 5 RIREGYLVKKGSVFN-------TWKPMWVVLLEDGIEFYKKKSDNSPKGM 47
>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 102
Score = 37.6 bits (86), Expect = 3e-05
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Query: 43 LRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDS------EIFLSGIRLSDL 96
++ G+L K S KR +++RW + YY+ + I LS I +
Sbjct: 2 VKSGWLDKLSPQGKR------MFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAISTVRV 55
Query: 97 PDQIFHDILVP 107
+++
Sbjct: 56 QGDNKFEVVTT 66
>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8
(ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 37.6 bits (86), Expect = 5e-05
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 14/67 (20%)
Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDS------EIFLSGIR 92
S I+ +L R K ++ + W VL L+ Y T + L+
Sbjct: 5 SSGIVMADWLKIRGTLK--------SWTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACE 56
Query: 93 LSDLPDQ 99
+ + P +
Sbjct: 57 IIERPSK 63
>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 127
Score = 37.6 bits (86), Expect = 5e-05
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 13/62 (20%)
Query: 44 RQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDS------EIFLSGIRLSDLP 97
R+G+L+K K +K+RWF+LT L Y++ + I L + + ++
Sbjct: 7 REGWLLKLGGRVK-------TWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVL 59
Query: 98 DQ 99
D
Sbjct: 60 DP 61
>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 117
Score = 37.3 bits (85), Expect = 6e-05
Identities = 12/47 (25%), Positives = 15/47 (31%), Gaps = 7/47 (14%)
Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
S +G L K+ K +K RWFVL D
Sbjct: 5 SSGRSYEGILYKKGAFMK-------PWKARWFVLDKTKHQLRYYDHR 44
>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 122
Score = 36.8 bits (84), Expect = 9e-05
Identities = 4/42 (9%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 45 QGFLIKRSQNKKRF-STSNNNYKQRWFVLTTKHLIYYDTDSE 85
+G++ ++ + SN ++ + + + +Y
Sbjct: 11 EGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKG 52
>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9
{Human (Homo sapiens) [TaxId: 9606]}
Length = 150
Score = 35.8 bits (81), Expect = 2e-04
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLT-----TKHLIYYDTDSEIF 87
I + G+L K + N S + ++K+R+F L + +L +Y +
Sbjct: 15 KGGITKHGWLYKGNMNSA-ISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISK 67
>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 35.3 bits (80), Expect = 3e-04
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
Query: 41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYY 80
I+++G+L KR + K ++ R+F+L
Sbjct: 6 AIVKEGWLHKRGEYIK-------TWRPRYFLLKNDGTFIG 38
>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}
Length = 111
Score = 34.5 bits (78), Expect = 4e-04
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLPDQIF 101
++R+G+L + + K+ WFVLT ++L +Y D E + D
Sbjct: 3 VIRKGWLTINNIGIMK-----GGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRD 57
Query: 102 HD 103
+
Sbjct: 58 VE 59
>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2
(beta-adrenergic receptor kinase 1) {Cow (Bos taurus)
[TaxId: 9913]}
Length = 119
Score = 35.0 bits (79), Expect = 5e-04
Identities = 7/47 (14%), Positives = 15/47 (31%), Gaps = 6/47 (12%)
Query: 41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIF 87
D + G++ K +++R+F L L +
Sbjct: 9 DCIMHGYMSKMGNPFL------TQWQRRYFYLFPNRLEWRGEGEAPQ 49
>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha,
APPL1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 32.3 bits (72), Expect = 0.003
Identities = 6/52 (11%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRL 93
+ G+L R++ ST + ++++ +L+ + +
Sbjct: 5 TRKAGYLNARNKTGLVSST----WDRQFYFTQGGNLMSQARGDVAGGLAMDI 52
>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for
secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 32.7 bits (73), Expect = 0.003
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
S + G+L +N + +K+R+FVL + S
Sbjct: 5 SSGMKHSGYLWAIGKNVWK------RWKKRFFVLVQVSQYTFAMCSY 45
>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21
{Human (Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 32.7 bits (73), Expect = 0.004
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 44 RQGFLIKRSQ---NKKRFSTSNNNYKQRWFVLTTKHLIYYD 81
++G+L R KR S +KQ + VL L Y
Sbjct: 3 KEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYK 43
>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing
protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 109
Score = 31.6 bits (70), Expect = 0.006
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 7/44 (15%)
Query: 39 SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDT 82
S G+L + +KK +K WFV+ K L Y
Sbjct: 5 SSGSTMSGYLYRSKGSKK-------PWKHLWFVIKNKVLYTYAA 41
>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein
kinase-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 147
Score = 32.0 bits (72), Expect = 0.007
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 9/52 (17%)
Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRL 93
IL+ G + KR ++R +LT +YY L G
Sbjct: 48 ILKMGPVDKRK---------GLFARRRQLLLTEGPHLYYVDPVNKVLKGEIP 90
>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter
protein APS {Mouse (Mus musculus) [TaxId: 10090]}
Length = 136
Score = 31.3 bits (70), Expect = 0.009
Identities = 6/42 (14%), Positives = 12/42 (28%), Gaps = 1/42 (2%)
Query: 40 DDILRQGFLIKRSQ-NKKRFSTSNNNYKQRWFVLTTKHLIYY 80
DI R+G L + +++ +L
Sbjct: 16 VDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGER 57
>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding
protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 31.0 bits (69), Expect = 0.009
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTD 83
+ +G+L K+ + R +K+RWFVL+ L YY
Sbjct: 9 VHIRGWLHKQDSSGLR------LWKRRWFVLSGHCLFYYKDS 44
>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain
2 isoform [TaxId: 9606]}
Length = 123
Score = 31.2 bits (69), Expect = 0.010
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 39 SDDILRQGFLIKRSQ-NKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
S +G L ++ + +N +++ + VL L +Y
Sbjct: 5 SSGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKA 52
>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain
[TaxId: 10090]}
Length = 106
Score = 30.8 bits (68), Expect = 0.013
Identities = 10/65 (15%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 45 QGFLIKRSQ-NKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLPDQIFHD 103
+GFL ++ + S+ ++ + V+ + + +Y S++P +
Sbjct: 2 EGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEA 61
Query: 104 ILVPA 108
I A
Sbjct: 62 ICEVA 66
>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 119
Score = 30.7 bits (69), Expect = 0.014
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 37 LISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLT-TKHLIYY---DTDSEIFLSGIR 92
L D L+ L+K SQ K S++ ++R++ L I+
Sbjct: 2 LQDDPDLQ--ALLKGSQLLKV--KSSSWRRERFYKLQEDCKTIWQESRKVMRSPESQLFS 57
Query: 93 LSDL 96
+ D+
Sbjct: 58 IEDI 61
>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 132
Score = 30.1 bits (67), Expect = 0.026
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 40 DDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYY 80
DDI G +I SQ + + ++R+F+L + LI
Sbjct: 20 DDIKTLGNVIFMSQVVMQ-HGACEEKEERYFLLFSSVLIML 59
>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 29.9 bits (66), Expect = 0.030
Identities = 7/49 (14%), Positives = 18/49 (36%), Gaps = 7/49 (14%)
Query: 43 LRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGI 91
LR+G+++ S K+ ++ L K + + ++
Sbjct: 2 LREGWVVHYSNKDTL-------RKRHYWRLDCKCITLFQNNTTNRYYKE 43
>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId:
9606]}
Length = 95
Score = 29.5 bits (65), Expect = 0.031
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 61 SNNNYKQRWFVLTTKHLIYY 80
N+ +K RW + HL +Y
Sbjct: 11 VNSQWKSRWCSVRDNHLHFY 30
>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 29.5 bits (65), Expect = 0.032
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 11/40 (27%)
Query: 41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYY 80
D+ + G+L K + +R+FVL
Sbjct: 1 DVRKVGYLRKPK-----------SMHKRFFVLRAASEAGG 29
>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase
C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 101
Score = 29.2 bits (64), Expect = 0.042
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 7/60 (11%)
Query: 43 LRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSEIFLSGIRLSDLPDQIFH 102
++ G L N+ + +FVLT+ + Y + S L G+
Sbjct: 2 IKNGILYLEDP-------VNHEWYPHYFVLTSSKIYYSEETSSDLLRGVLDVPACQIAIR 54
>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1,
STAP-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 136
Score = 28.4 bits (62), Expect = 0.10
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 7/36 (19%)
Query: 45 QGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYY 80
+GFL+ + + Y+ W L L +Y
Sbjct: 14 EGFLLIKRSGYR-------EYEHYWTELRGTTLFFY 42
>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 126
Score = 28.4 bits (62), Expect = 0.10
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 10/60 (16%)
Query: 26 SGKCGMANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
SG GM + GFL + ++ + +R+F+L T+
Sbjct: 3 SGSSGMP----YVDRQNRICGFLDIED------NENSGKFLRRYFILDTQANCLLWYMDN 52
>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange
factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 162
Score = 27.0 bits (59), Expect = 0.40
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 9/53 (16%)
Query: 35 DDLI--SDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE 85
DD++ S +++ G + Q R +QR F L ++ D
Sbjct: 18 DDILDRSSELIYTGEMAWIYQPYGRN-------QQRVFFLFDHQMVLCKKDLI 63
>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing
protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 99
Score = 26.1 bits (56), Expect = 0.51
Identities = 3/35 (8%), Positives = 7/35 (20%), Gaps = 8/35 (22%)
Query: 46 GFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYY 80
G L + + + W +
Sbjct: 5 GPLRLSESGE--------TWSEVWAAIPMSDPQVL 31
>d1fhoa_ b.55.1.1 (A:) UNC-89 {Nematode (Caenorhabditis elegans)
[TaxId: 6239]}
Length = 119
Score = 26.4 bits (58), Expect = 0.54
Identities = 8/69 (11%), Positives = 18/69 (26%), Gaps = 19/69 (27%)
Query: 41 DILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYYDTDSE-----------IFLS 89
I+R ++ K R+ L +++ + D+ I L
Sbjct: 9 RIIRHDAFQVWEGDEPP--------KLRYVFLFRNKIMFTEQDASTSPPSYTHYSSIRLD 60
Query: 90 GIRLSDLPD 98
+
Sbjct: 61 KYNIRQHTT 69
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus
thermophilus [TaxId: 274]}
Length = 1504
Score = 26.3 bits (57), Expect = 0.87
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 20 LDLEDESGKCGMANKDDLISDDILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTT 74
LDLE + +++ R+ KR + + F S N + W +L
Sbjct: 467 LDLEALEKE----LLEEMKHPSRARRAKARKRLEVVRAFLDSGN--RPEWMILEA 515
>d1kqra_ b.29.1.14 (A:) vp4 sialic acid binding domain {Rhesus
rotavirus [TaxId: 10969]}
Length = 160
Score = 23.6 bits (51), Expect = 5.3
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 52 SQNKKRF-----STSNNNYKQRWFVLTTKHL 77
SQ + +F +T N +Y Q + +T L
Sbjct: 70 SQTQWKFIDVVKTTQNGSYSQYGPLQSTPKL 100
>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 22.7 bits (48), Expect = 10.0
Identities = 5/39 (12%), Positives = 10/39 (25%), Gaps = 11/39 (28%)
Query: 42 ILRQGFLIKRSQNKKRFSTSNNNYKQRWFVLTTKHLIYY 80
+ +G L + +R L +I
Sbjct: 27 FIMEGTLTRVGAK-----------HERHIFLFDGLMICC 54
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.408
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 408,883
Number of extensions: 16129
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 45
Length of query: 108
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 40
Effective length of database: 1,473,956
Effective search space: 58958240
Effective search space used: 58958240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)