BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17482
(353 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H06|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|2H06|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|2HCR|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 In Complex With Amp(Atp), Cadmium And
Sulfate Ion
pdb|2HCR|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 In Complex With Amp(Atp), Cadmium And
Sulfate Ion
pdb|3EFH|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|3EFH|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|3S5J|B Chain B, 2.0a Crystal Structure Of Human Phosphoribosyl
Pyrophosphate Synthetase 1
pdb|3S5J|A Chain A, 2.0a Crystal Structure Of Human Phosphoribosyl
Pyrophosphate Synthetase 1
Length = 326
Score = 495 bits (1275), Expect = e-140, Method: Compositional matrix adjust.
Identities = 245/300 (81%), Positives = 262/300 (87%), Gaps = 24/300 (8%)
Query: 53 VEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPCFPYARQXXXX 112
VEIGESVRGEDVYIVQSG GE+NDNLMELLIMINACKIASASRVTAVIPCFPYARQ
Sbjct: 42 VEIGESVRGEDVYIVQSGCGEINDNLMELLIMINACKIASASRVTAVIPCFPYARQ---- 97
Query: 113 XXXXXXXXEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQIQGF 172
+ K +SRAPISAKLVANMLSVAGADHIITMDLHASQIQGF
Sbjct: 98 --------------------DKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGF 137
Query: 173 FDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERK 232
FDIPVDNLYAEPAVLKWI+ENI EW+N IVSPDAGGAKRVTSIADRLNV+FALIHKERK
Sbjct: 138 FDIPVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNVDFALIHKERK 197
Query: 233 KANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPA 292
KANEV MVLVGDVKDRVAILVDDMADTCGTICHAA+KL+ AGAT+VYAILTHGIFSGPA
Sbjct: 198 KANEVDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPA 257
Query: 293 INRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRRTHNGESVSYLFSNVP 352
I+RINNACFEAVVVTNTIPQ+ MK C+KI+ ID+SM+ AEA+RRTHNGESVSYLFS+VP
Sbjct: 258 ISRINNACFEAVVVTNTIPQEDKMKHCSKIQVIDISMILAEAIRRTHNGESVSYLFSHVP 317
>pdb|2H07|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant S132a
pdb|2H07|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant S132a
Length = 326
Score = 494 bits (1272), Expect = e-140, Method: Compositional matrix adjust.
Identities = 244/300 (81%), Positives = 262/300 (87%), Gaps = 24/300 (8%)
Query: 53 VEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPCFPYARQXXXX 112
VEIGESVRGEDVYIVQSG GE+NDNLMELLIMINACKIASASRVTAVIPCFPYARQ
Sbjct: 42 VEIGESVRGEDVYIVQSGCGEINDNLMELLIMINACKIASASRVTAVIPCFPYARQ---- 97
Query: 113 XXXXXXXXEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQIQGF 172
+ K +SRAPISAKLVANMLSVAGADHIITMDLHA+QIQGF
Sbjct: 98 --------------------DKKDKSRAPISAKLVANMLSVAGADHIITMDLHAAQIQGF 137
Query: 173 FDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERK 232
FDIPVDNLYAEPAVLKWI+ENI EW+N IVSPDAGGAKRVTSIADRLNV+FALIHKERK
Sbjct: 138 FDIPVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNVDFALIHKERK 197
Query: 233 KANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPA 292
KANEV MVLVGDVKDRVAILVDDMADTCGTICHAA+KL+ AGAT+VYAILTHGIFSGPA
Sbjct: 198 KANEVDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPA 257
Query: 293 INRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRRTHNGESVSYLFSNVP 352
I+RINNACFEAVVVTNTIPQ+ MK C+KI+ ID+SM+ AEA+RRTHNGESVSYLFS+VP
Sbjct: 258 ISRINNACFEAVVVTNTIPQEDKMKHCSKIQVIDISMILAEAIRRTHNGESVSYLFSHVP 317
>pdb|2H08|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant Y146m
pdb|2H08|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant Y146m
Length = 326
Score = 493 bits (1268), Expect = e-140, Method: Compositional matrix adjust.
Identities = 244/300 (81%), Positives = 261/300 (87%), Gaps = 24/300 (8%)
Query: 53 VEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPCFPYARQXXXX 112
VEIGESVRGEDVYIVQSG GE+NDNLMELLIMINACKIASASRVTAVIPCFPYARQ
Sbjct: 42 VEIGESVRGEDVYIVQSGCGEINDNLMELLIMINACKIASASRVTAVIPCFPYARQ---- 97
Query: 113 XXXXXXXXEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQIQGF 172
+ K +SRAPISAKLVANMLSVAGADHIITMDLHASQIQGF
Sbjct: 98 --------------------DKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGF 137
Query: 173 FDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERK 232
FDIPVDNL AEPAVLKWI+ENI EW+N IVSPDAGGAKRVTSIADRLNV+FALIHKERK
Sbjct: 138 FDIPVDNLMAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNVDFALIHKERK 197
Query: 233 KANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPA 292
KANEV MVLVGDVKDRVAILVDDMADTCGTICHAA+KL+ AGAT+VYAILTHGIFSGPA
Sbjct: 198 KANEVDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPA 257
Query: 293 INRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRRTHNGESVSYLFSNVP 352
I+RINNACFEAVVVTNTIPQ+ MK C+KI+ ID+SM+ AEA+RRTHNGESVSYLFS+VP
Sbjct: 258 ISRINNACFEAVVVTNTIPQEDKMKHCSKIQVIDISMILAEAIRRTHNGESVSYLFSHVP 317
>pdb|3DAH|A Chain A, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|B Chain B, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|C Chain C, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
Length = 319
Score = 258 bits (660), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 140/302 (46%), Positives = 188/302 (62%), Gaps = 27/302 (8%)
Query: 49 GQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPCFPYARQ 108
G+I VEI E+VRG+DV+++QS NDNLMEL+IM++A K ASA R+TA IP F YARQ
Sbjct: 42 GEIQVEIQENVRGKDVFVLQSTCAPTNDNLMELMIMVDALKRASAGRITAAIPYFGYARQ 101
Query: 109 XXXXXXXXXXXXEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQ 168
D R +R ISAK+VANML +AG + IITMDLHA Q
Sbjct: 102 --------------DRRPR---------SARVAISAKVVANMLEIAGVERIITMDLHADQ 138
Query: 169 IQGFFDIPVDNLYAEPAVLKWI-KENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALI 227
IQGFFDIPVDN+YA P +L + K+N P+ ++VSPD GG R ++A +LN + A+I
Sbjct: 139 IQGFFDIPVDNIYATPILLGDLRKQNYPDL---LVVSPDVGGVVRARALAKQLNCDLAII 195
Query: 228 HKERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGI 287
K R KAN M ++G+V+ R +++DDM DT GT+C AA+ L E GA +V+A TH +
Sbjct: 196 DKRRPKANVAEVMNIIGEVEGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVFAYATHPV 255
Query: 288 FSGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRRTHNGESVSYL 347
SG A +RI + + +VVT+TIP C KIR + + + AE R G+SV L
Sbjct: 256 LSGGAADRIAASALDELVVTDTIPLSAESLACPKIRALSSAGLLAETFSRIRRGDSVMSL 315
Query: 348 FS 349
F+
Sbjct: 316 FA 317
>pdb|1DKR|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKR|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1IBS|A Chain A, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
pdb|1IBS|B Chain B, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
Length = 317
Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 133/303 (43%), Positives = 185/303 (61%), Gaps = 31/303 (10%)
Query: 49 GQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPCFPYARQ 108
G++ + I ES+RG D YI+QS S VN+++MELLIM++A K ASA + VIP + YARQ
Sbjct: 44 GEVQINIEESIRGCDCYIIQSTSDPVNEHIMELLIMVDALKRASAKTINIVIPYYGYARQ 103
Query: 109 XXXXXXXXXXXXEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQ 168
+ K RSR PI+AKL AN+L AGA +I +DLHA Q
Sbjct: 104 ------------------------DRKARSREPITAKLFANLLETAGATRVIALDLHAPQ 139
Query: 169 IQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIH 228
IQGFFDIP+D+L P + ++ + ++ +IVSPD GG R +ADRL A+I
Sbjct: 140 IQGFFDIPIDHLMGVPILGEYFEGK--NLEDIVIVSPDHGGVTRARKLADRLKAPIAIID 197
Query: 229 KERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIF 288
K R + N M +VG+++ + AIL+DD+ DT GTI AA L+E GA +VYA TH +
Sbjct: 198 KRRPRPNVAEVMNIVGNIEGKTAILIDDIIDTAGTITLAANALVENGAKEVYACCTHPVL 257
Query: 289 SGPAINRINNACFEAVVVTNTI--PQDGHMKDCTKIRCIDVSMMFAEAVRRTHNGESVSY 346
SGPA+ RINN+ + +VVTN+I P++ K + + + V + AEA+ R H +SVSY
Sbjct: 258 SGPAVERINNSTIKELVVTNSIKLPEE---KKIERFKQLSVGPLLAEAIIRVHEQQSVSY 314
Query: 347 LFS 349
LFS
Sbjct: 315 LFS 317
>pdb|2JI4|A Chain A, Human Phosphoribosylpyrophosphate Synthetase - Associated
Protein 41 (Pap41)
Length = 379
Score = 241 bits (614), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 136/330 (41%), Positives = 190/330 (57%), Gaps = 56/330 (16%)
Query: 53 VEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPCFPYARQXXXX 112
V+I ESVRG+DV+I+Q+ S +VN +MELLIM+ ACK + A + VIP FPY++Q
Sbjct: 71 VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSKQ---- 126
Query: 113 XXXXXXXXEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQIQGF 172
K R R I +KL+A+M+ AG H+ITMDLH +IQGF
Sbjct: 127 ---------------------CKMRKRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGF 165
Query: 173 FDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERK 232
F+IPVDNL A P +L++I+E IP+++N++IV+ AKR S A+RL + A+IH E +
Sbjct: 166 FNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQ 225
Query: 233 KA-------------------------------NEVASMVLVGDVKDRVAILVDDMADTC 261
A E + +VGDV R+AI+VDD+ D
Sbjct: 226 DAESDLVDGRHSPPMVRSVAAIHPSLEIPMLIPKEKPPITVVGDVGGRIAIIVDDIIDDV 285
Query: 262 GTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTNTIPQDGHMKDCTK 321
+ AAE L E GA K++ + THG+ S A RI + + VVVTNTIP + C K
Sbjct: 286 DSFLAAAETLKERGAYKIFVMATHGLLSSDAPRRIEESAIDEVVVTNTIPHEVQKLQCPK 345
Query: 322 IRCIDVSMMFAEAVRRTHNGESVSYLFSNV 351
I+ +D+SM+ +EA+RR HNGES+SYLF N+
Sbjct: 346 IKTVDISMILSEAIRRIHNGESMSYLFRNI 375
>pdb|2C4K|A Chain A, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|B Chain B, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|C Chain C, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|D Chain D, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|E Chain E, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|F Chain F, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
Length = 370
Score = 234 bits (596), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 185/335 (55%), Gaps = 55/335 (16%)
Query: 46 EDRGQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPCFPY 105
E G+ VEI ESVRG+D++I+Q+ +VN +MELLIM A K A A + VIP FPY
Sbjct: 61 ETNGETRVEIKESVRGQDIFIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPY 120
Query: 106 ARQXXXXXXXXXXXXEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLH 165
++Q K R R I KL+A+ML+ AG HIITMDLH
Sbjct: 121 SKQS-------------------------KMRKRGSIVCKLLASMLAKAGLTHIITMDLH 155
Query: 166 ASQIQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFA 225
+IQGFF PVDNL A P +L++I+E IP ++N++IV+ AKR S A+RL + A
Sbjct: 156 QKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSYAERLRLGLA 215
Query: 226 LIHKERK------------------------------KANEVASMVLVGDVKDRVAILVD 255
+IH E + A E + +VGDV R+AI+VD
Sbjct: 216 VIHGEAQCTELDMDDGRHSPPMVKNATVHPGLELPLMMAKEKPPITVVGDVGGRIAIIVD 275
Query: 256 DMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTNTIPQDGH 315
D+ D + AAE L E GA K+Y + THGI S A I + + VVVTNT+P +
Sbjct: 276 DIIDDVESFVAAAEILKERGAYKIYVMATHGILSAEAPRLIEESSVDEVVVTNTVPHEVQ 335
Query: 316 MKDCTKIRCIDVSMMFAEAVRRTHNGESVSYLFSN 350
C KI+ +D+S++ +EA+RR HNGES++YLF N
Sbjct: 336 KLQCPKIKTVDISLILSEAIRRIHNGESMAYLFRN 370
>pdb|1U9Y|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Z|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
Length = 284
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 131/279 (46%), Gaps = 34/279 (12%)
Query: 49 GQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPCFPYARQ 108
+I V I + + ++ I+ + + ND ++E +++ +A + ++T V P YARQ
Sbjct: 35 NEIYVRIVDEINDDEAVIINTQKNQ-NDAIVETILLCDALRDEGVKKITLVAPYLAYARQ 93
Query: 109 XXXXXXXXXXXXEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQ 168
+ KF IS + +A + S D +IT++ H +
Sbjct: 94 ------------------------DKKFNPGEAISIRALAKIYS-NIVDKLITINPHETH 128
Query: 169 IQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIH 228
I+ FF IP A P + +++K+ + + I+++PD G + + + LN E+ +
Sbjct: 129 IKDFFTIPFIYGDAVPKLAEYVKDKL---NDPIVLAPDKGALEFAKTASKILNAEYDYLE 185
Query: 229 KERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIF 288
K R E+ D KDR +VDD+ T GT+ A + L E GA K+ A H +
Sbjct: 186 KTRLSPTEIQIAPKTLDAKDRDVFIVDDIISTGGTMATAVKLLKEQGAKKIIAACVHPVL 245
Query: 289 SGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDV 327
G A+N++ +A E VV T+T ++ + +K+ +V
Sbjct: 246 IGDALNKLYSAGVEEVVGTDT-----YLSEVSKVSVAEV 279
>pdb|3LPN|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LPN|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LRT|A Chain A, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3LRT|B Chain B, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3NAG|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
pdb|3NAG|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
Length = 286
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 141/292 (48%), Gaps = 43/292 (14%)
Query: 45 PEDR----GQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVI 100
P++R G++ + E + G +++I+ G+ + +ME+++ ++A + V +
Sbjct: 27 PDERRFPDGELYLRYDEDLTGHNIFII--GNTHSDAEVMEMILTLSAIQDYRTKSVNIIA 84
Query: 101 PCFPYARQXXXXXXXXXXXXEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHII 160
P + YARQ ++++ PIS++++ + S + ++ I
Sbjct: 85 PYYGYARQ------------------------HQRYKNGEPISSQILTEIYS-SYSNSIA 119
Query: 161 TMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRL 220
T+D+H + + + +L+A A++++ K ++ +VSPD GG RV I+ +L
Sbjct: 120 TVDIHDEKTLSYSKVKFSDLHANDAIVRYYKNVDVDY----VVSPDDGGLARVADISAKL 175
Query: 221 NVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVY 280
+ I K+R V V DV + ++VDD+ T GTI ++ L E GA+K+Y
Sbjct: 176 GKKHFFIEKKRIDDRTVEMKVPNVDVNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIY 235
Query: 281 AILTHGIFSGPAINRI-NNACFEAVVVTNTIPQDG-----HMKDCTKIRCID 326
HG+F + N+I NA + + VT+T+ + + C IR ID
Sbjct: 236 VSAVHGLFVNGSENKILQNA--DEIHVTDTVESKFSDISVYQEVCNYIRDID 285
>pdb|3MBI|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|C Chain C, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|D Chain D, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
Length = 287
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 141/292 (48%), Gaps = 43/292 (14%)
Query: 45 PEDR----GQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVI 100
P++R G++ + E + G +++I+ G+ + +ME+++ ++A + V +
Sbjct: 29 PDERRFPDGELYLRYDEDLTGHNIFII--GNTHSDAEVMEMILTLSAIQDYRTKSVNIIA 86
Query: 101 PCFPYARQXXXXXXXXXXXXEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHII 160
P + YARQ ++++ PIS++++ + S + ++ I
Sbjct: 87 PYYGYARQ------------------------HQRYKNGEPISSQILTEIYS-SYSNSIA 121
Query: 161 TMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRL 220
T+D+H + + + +L+A A++++ K ++ +VSPD GG RV I+ +L
Sbjct: 122 TVDIHDEKTLSYSKVKFSDLHANDAIVRYYKNVDVDY----VVSPDDGGLARVADISAKL 177
Query: 221 NVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVY 280
+ I K+R V V DV + ++VDD+ T GTI ++ L E GA+K+Y
Sbjct: 178 GKKHFFIEKKRIDDRTVEMKVPNVDVNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIY 237
Query: 281 AILTHGIFSGPAINRI-NNACFEAVVVTNTIPQDG-----HMKDCTKIRCID 326
HG+F + N+I NA + + VT+T+ + + C IR ID
Sbjct: 238 VSAVHGLFVNGSENKILQNA--DEIHVTDTVESKFSDISVYQEVCNYIRDID 287
>pdb|1BD3|D Chain D, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|C Chain C, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|B Chain B, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|A Chain A, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD4|D Chain D, Uprt-Uracil Complex
pdb|1BD4|C Chain C, Uprt-Uracil Complex
pdb|1BD4|B Chain B, Uprt-Uracil Complex
pdb|1BD4|A Chain A, Uprt-Uracil Complex
pdb|1JLS|B Chain B, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|A Chain A, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|D Chain D, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|C Chain C, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLR|A Chain A, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|B Chain B, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|D Chain D, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|C Chain C, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
Length = 243
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 242 LVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRI 296
L D+++R +L+D M T G++C A E L+ G + I + + + I R+
Sbjct: 150 LPADIRERWVMLLDPMCATAGSVCKAIEVLLRLGVKEERIIFVNILAAPQGIERV 204
>pdb|1UPU|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|C Chain C, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|B Chain B, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|A Chain A, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPF|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|C Chain C, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|B Chain B, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|A Chain A, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
Length = 224
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 242 LVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRI 296
L D+++R +L+D M T G++C A E L+ G + I + + + I R+
Sbjct: 131 LPADIRERWVMLLDPMCATAGSVCKAIEVLLRLGVKEERIIFVNILAAPQGIERV 185
>pdb|1W36|B Chain B, Recbcd:dna Complex
pdb|1W36|E Chain E, Recbcd:dna Complex
pdb|3K70|B Chain B, Crystal Structure Of The Complete Initiation Complex Of
Recbcd
pdb|3K70|E Chain E, Crystal Structure Of The Complete Initiation Complex Of
Recbcd
Length = 1180
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 18/105 (17%)
Query: 134 WKFRS-----RAPISAKLVA-NMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVL 187
W+ R RA +SA+ +A N+L+ AG + +T LH S++ L +E A++
Sbjct: 652 WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISEL---LQEAGTQLESEHALV 708
Query: 188 KWIKENIPEWKNSIIVSPDAGGAKRVTSI-ADRLNVEFALIHKER 231
+W+ ++I E PD+ + + + +D+ V+ IHK +
Sbjct: 709 RWLSQHILE--------PDSNASSQQMRLESDKHLVQIVTIHKSK 745
>pdb|1VDM|A Chain A, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|B Chain B, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|C Chain C, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|D Chain D, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|E Chain E, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|F Chain F, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|G Chain G, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|H Chain H, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|I Chain I, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|J Chain J, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|K Chain K, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|L Chain L, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
Length = 153
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 9/96 (9%)
Query: 192 ENIPEWKNSIIVSPDAGG---AKRVTSIADRL-----NVEFALIHKERKKANEVASMVLV 243
E + E+K +I+ GG A R++ I + +V+F ER + V ++ +
Sbjct: 20 EKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGIDERGE-KPVITIPIH 78
Query: 244 GDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKV 279
GD+KD+ ++VDD++DT T+ E++ + GA ++
Sbjct: 79 GDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEI 114
>pdb|2V6K|A Chain A, Structure Of Maleyl Pyruvate Isomerase, A Bacterial
Glutathione-s-transferase In Zeta Class, In Complex With
Substrate Analogue Dicarboxyethyl Glutathione
pdb|2V6K|B Chain B, Structure Of Maleyl Pyruvate Isomerase, A Bacterial
Glutathione-s-transferase In Zeta Class, In Complex With
Substrate Analogue Dicarboxyethyl Glutathione
Length = 214
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 164 LHASQIQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVE 223
L+ Q+ D L PA+++W++E P ++ DA G +RV ++A + +
Sbjct: 48 LNPQQLVPALDTGAQVLIQSPAIIEWLEEQYP---TPALLPADADGRQRVRALAAIVGCD 104
Query: 224 FALIHKER 231
I+ R
Sbjct: 105 IHPINNRR 112
>pdb|2JL4|A Chain A, Holo Structure Of Maleyl Pyruvate Isomerase, A Bacterial
Glutathione-S-Transferase In Zeta Class
pdb|2JL4|B Chain B, Holo Structure Of Maleyl Pyruvate Isomerase, A Bacterial
Glutathione-S-Transferase In Zeta Class
Length = 213
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 164 LHASQIQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVE 223
L+ Q+ D L PA+++W++E P ++ DA G +RV ++A + +
Sbjct: 47 LNPQQLVPALDTGAQVLIQSPAIIEWLEEQYP---TPALLPADADGRQRVRALAAIVGCD 103
Query: 224 FALIHKER 231
I+ R
Sbjct: 104 IHPINNRR 111
>pdb|2Y4N|A Chain A, Paak1 In Complex With Phenylacetyl Adenylate
pdb|2Y4N|B Chain B, Paak1 In Complex With Phenylacetyl Adenylate
Length = 437
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 56/148 (37%), Gaps = 25/148 (16%)
Query: 163 DLHASQIQGFFDIPVDNL---------YAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRV 213
DL S G F +P D + +P V+ + +I W N + S A GA+R
Sbjct: 75 DLRDSYPFGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARR- 133
Query: 214 TSIADRLNVEFAL--------IHKERKKANEVASMVLVGDVKDRVAILVDDMAD----TC 261
D+++V + H ++A G + +V ++ D D T
Sbjct: 134 ---GDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTP 190
Query: 262 GTICHAAEKLMEAGATKVYAILTHGIFS 289
+ A+++ G V + L GIF
Sbjct: 191 SYMLSIADEIERQGLDPVQSSLRIGIFG 218
>pdb|2EHJ|A Chain A, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|B Chain B, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|C Chain C, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|D Chain D, Structure Of Uracil Phosphoribosyl Transferase
Length = 208
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 242 LVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAIL 283
LV ++ +R+A++VD M T G++ + L +AG + + ++
Sbjct: 117 LVSNIDERMALIVDPMLATGGSVIATIDLLKKAGCSSIKVLV 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,341,817
Number of Sequences: 62578
Number of extensions: 346629
Number of successful extensions: 936
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 906
Number of HSP's gapped (non-prelim): 24
length of query: 353
length of database: 14,973,337
effective HSP length: 100
effective length of query: 253
effective length of database: 8,715,537
effective search space: 2205030861
effective search space used: 2205030861
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)