Query psy17482
Match_columns 353
No_of_seqs 305 out of 2513
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 23:36:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17482.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17482hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0462 PrsA Phosphoribosylpyr 100.0 2.4E-93 5.3E-98 679.2 34.9 303 20-349 11-314 (314)
2 PRK04923 ribose-phosphate pyro 100.0 2.3E-83 5E-88 621.4 34.9 305 20-349 13-318 (319)
3 PRK02269 ribose-phosphate pyro 100.0 2.5E-82 5.5E-87 615.3 35.2 305 20-350 12-318 (320)
4 PTZ00145 phosphoribosylpyropho 100.0 3.2E-82 7E-87 629.2 34.8 304 20-350 126-437 (439)
5 PRK00553 ribose-phosphate pyro 100.0 6E-82 1.3E-86 614.6 35.6 303 20-349 16-322 (332)
6 PRK03092 ribose-phosphate pyro 100.0 7.7E-81 1.7E-85 601.1 34.4 300 25-351 1-303 (304)
7 PRK02458 ribose-phosphate pyro 100.0 2.4E-80 5.3E-85 601.6 34.2 302 20-349 16-317 (323)
8 KOG1448|consensus 100.0 5.4E-81 1.2E-85 583.0 21.3 305 20-350 10-315 (316)
9 PRK02812 ribose-phosphate pyro 100.0 5.7E-79 1.2E-83 592.9 35.1 302 20-349 28-330 (330)
10 PRK01259 ribose-phosphate pyro 100.0 6.8E-78 1.5E-82 582.0 34.7 303 20-349 7-309 (309)
11 PLN02369 ribose-phosphate pyro 100.0 1.7E-77 3.8E-82 577.2 35.0 301 23-349 1-302 (302)
12 PRK06827 phosphoribosylpyropho 100.0 1.6E-77 3.4E-82 590.9 34.5 304 20-350 15-369 (382)
13 PRK07199 phosphoribosylpyropho 100.0 1.2E-76 2.5E-81 571.3 34.8 284 20-341 9-296 (301)
14 TIGR01251 ribP_PPkin ribose-ph 100.0 5E-74 1.1E-78 555.3 35.9 300 20-349 7-308 (308)
15 PLN02297 ribose-phosphate pyro 100.0 5.2E-73 1.1E-77 548.5 32.8 286 20-336 23-325 (326)
16 PRK00934 ribose-phosphate pyro 100.0 7.8E-73 1.7E-77 541.5 33.6 279 20-336 6-284 (285)
17 KOG1503|consensus 100.0 1.4E-69 3E-74 492.3 25.4 308 20-353 15-352 (354)
18 PF14572 Pribosyl_synth: Phosp 100.0 9.7E-42 2.1E-46 303.9 11.5 154 196-349 1-184 (184)
19 PF13793 Pribosyltran_N: N-ter 100.0 3.7E-37 8E-42 257.9 10.5 110 20-155 7-116 (116)
20 PRK13811 orotate phosphoribosy 99.8 1.2E-18 2.5E-23 155.5 13.4 152 145-301 3-156 (170)
21 PRK08525 amidophosphoribosyltr 99.7 1.2E-16 2.6E-21 162.1 12.8 147 186-333 264-426 (445)
22 PLN02293 adenine phosphoribosy 99.6 5E-15 1.1E-19 134.0 15.5 108 198-305 62-182 (187)
23 PRK13812 orotate phosphoribosy 99.6 5.5E-15 1.2E-19 132.5 13.7 150 144-301 3-159 (176)
24 PRK13809 orotate phosphoribosy 99.6 3.7E-14 7.9E-19 130.2 13.8 151 146-300 12-169 (206)
25 TIGR01203 HGPRTase hypoxanthin 99.6 2E-14 4.3E-19 127.8 11.4 107 182-292 11-125 (166)
26 PRK09162 hypoxanthine-guanine 99.6 3E-14 6.6E-19 128.2 12.3 106 182-291 25-137 (181)
27 PRK15423 hypoxanthine phosphor 99.5 6.1E-14 1.3E-18 126.0 12.7 108 183-293 18-134 (178)
28 PRK02304 adenine phosphoribosy 99.5 1.1E-13 2.5E-18 123.6 14.4 100 198-297 51-163 (175)
29 PF00156 Pribosyltran: Phospho 99.5 1.7E-13 3.7E-18 114.4 12.9 102 182-285 13-125 (125)
30 PRK05793 amidophosphoribosyltr 99.5 2.8E-14 6E-19 145.7 9.7 147 185-332 276-438 (469)
31 PRK07322 adenine phosphoribosy 99.5 1.2E-13 2.5E-18 124.1 11.5 119 168-290 19-159 (178)
32 PRK00455 pyrE orotate phosphor 99.5 5.2E-13 1.1E-17 122.1 15.9 154 143-301 4-165 (202)
33 TIGR01367 pyrE_Therm orotate p 99.5 3.1E-13 6.7E-18 122.3 13.0 132 147-283 2-140 (187)
34 PRK11595 DNA utilization prote 99.5 3.2E-14 7E-19 132.4 6.8 132 132-283 79-222 (227)
35 COG1926 Predicted phosphoribos 99.5 1.3E-13 2.9E-18 124.7 10.3 148 178-329 6-203 (220)
36 PRK02277 orotate phosphoribosy 99.5 2.6E-13 5.7E-18 124.0 12.3 105 198-305 85-194 (200)
37 COG0634 Hpt Hypoxanthine-guani 99.5 3.3E-13 7.2E-18 119.2 12.1 107 183-293 21-135 (178)
38 PRK00129 upp uracil phosphorib 99.5 8.5E-13 1.8E-17 121.4 14.8 114 198-313 70-187 (209)
39 PLN02238 hypoxanthine phosphor 99.5 6E-13 1.3E-17 120.7 12.6 109 183-295 21-141 (189)
40 PRK05205 bifunctional pyrimidi 99.4 9.4E-13 2E-17 117.9 12.5 105 183-290 16-135 (176)
41 PRK12560 adenine phosphoribosy 99.4 1.1E-12 2.4E-17 118.8 12.6 154 158-312 11-181 (187)
42 TIGR01090 apt adenine phosphor 99.4 1.7E-12 3.6E-17 115.5 13.4 101 198-298 46-159 (169)
43 TIGR00201 comF comF family pro 99.4 8.4E-13 1.8E-17 119.5 8.5 129 132-283 50-187 (190)
44 TIGR00336 pyrE orotate phospho 99.4 3.9E-12 8.4E-17 113.7 12.1 97 198-299 54-159 (173)
45 PRK13810 orotate phosphoribosy 99.4 9.8E-12 2.1E-16 112.5 14.7 152 143-302 15-175 (187)
46 PRK09219 xanthine phosphoribos 99.3 2.5E-11 5.4E-16 110.1 14.9 127 186-312 38-183 (189)
47 TIGR01744 XPRTase xanthine pho 99.3 1.9E-11 4E-16 111.1 13.9 128 183-310 35-181 (191)
48 PTZ00271 hypoxanthine-guanine 99.3 6.8E-12 1.5E-16 115.5 10.5 109 182-293 36-160 (211)
49 COG1040 ComFC Predicted amidop 99.3 3.6E-12 7.7E-17 118.6 8.7 129 132-283 83-219 (225)
50 PTZ00149 hypoxanthine phosphor 99.3 1.5E-11 3.3E-16 115.2 12.2 107 182-292 66-191 (241)
51 TIGR01091 upp uracil phosphori 99.3 3.2E-11 7E-16 110.8 14.1 113 198-312 68-184 (207)
52 TIGR01743 purR_Bsub pur operon 99.3 1.3E-10 2.9E-15 110.4 18.6 124 185-312 115-255 (268)
53 COG0461 PyrE Orotate phosphori 99.3 8.9E-11 1.9E-15 106.9 15.5 100 198-302 61-165 (201)
54 COG0856 Orotate phosphoribosyl 99.3 1.2E-11 2.6E-16 108.8 8.6 106 184-293 73-183 (203)
55 PRK09213 pur operon repressor; 99.2 5.2E-10 1.1E-14 106.6 17.8 125 186-313 118-258 (271)
56 PRK08558 adenine phosphoribosy 99.2 3E-10 6.6E-15 106.5 15.6 113 185-298 98-225 (238)
57 PRK06031 phosphoribosyltransfe 99.2 2.8E-10 6.1E-15 106.4 15.2 128 184-312 70-220 (233)
58 PRK05500 bifunctional orotidin 99.2 1.8E-10 3.9E-15 117.6 14.7 107 187-298 333-442 (477)
59 PRK07272 amidophosphoribosyltr 99.2 3.5E-11 7.7E-16 123.1 7.3 149 184-333 272-436 (484)
60 COG0503 Apt Adenine/guanine ph 99.2 5.4E-10 1.2E-14 100.6 13.8 87 198-284 53-152 (179)
61 PRK09123 amidophosphoribosyltr 99.2 3.2E-10 6.9E-15 116.2 13.0 141 184-332 282-445 (479)
62 PLN02440 amidophosphoribosyltr 99.1 7.8E-10 1.7E-14 113.5 12.4 111 173-284 245-376 (479)
63 PRK08341 amidophosphoribosyltr 99.0 7E-10 1.5E-14 112.6 10.0 101 185-286 259-372 (442)
64 PRK09246 amidophosphoribosyltr 99.0 1.8E-09 3.8E-14 111.5 10.7 104 182-285 277-395 (501)
65 PRK09177 xanthine-guanine phos 99.0 4.5E-09 9.7E-14 92.6 11.6 97 183-291 19-119 (156)
66 TIGR01134 purF amidophosphorib 99.0 1.7E-09 3.6E-14 110.1 10.1 140 184-332 260-423 (442)
67 COG2236 Predicted phosphoribos 98.9 3.6E-09 7.9E-14 95.9 9.2 100 182-283 15-122 (192)
68 KOG1712|consensus 98.9 8E-09 1.7E-13 90.0 10.9 115 183-298 45-172 (183)
69 PRK07349 amidophosphoribosyltr 98.9 7.3E-09 1.6E-13 106.6 11.2 100 184-284 299-413 (500)
70 PRK06781 amidophosphoribosyltr 98.9 1.2E-08 2.5E-13 104.6 10.9 102 185-287 271-387 (471)
71 KOG3367|consensus 98.8 1.7E-08 3.7E-13 88.9 8.9 122 183-311 46-182 (216)
72 PRK07631 amidophosphoribosyltr 98.8 2E-08 4.3E-13 102.9 10.1 101 185-286 271-386 (475)
73 COG2065 PyrR Pyrimidine operon 98.8 5.5E-08 1.2E-12 85.2 9.8 123 183-312 16-154 (179)
74 PRK06388 amidophosphoribosyltr 98.8 6.6E-08 1.4E-12 99.1 12.0 101 185-286 279-394 (474)
75 PRK07847 amidophosphoribosyltr 98.6 1.9E-07 4.2E-12 96.4 10.5 101 185-286 290-405 (510)
76 COG0035 Upp Uracil phosphoribo 98.4 4.1E-06 9E-11 76.7 12.2 114 198-313 70-188 (210)
77 COG0034 PurF Glutamine phospho 98.4 2.7E-07 5.8E-12 92.5 4.2 101 185-286 271-386 (470)
78 PLN02541 uracil phosphoribosyl 98.4 6E-06 1.3E-10 77.8 12.8 112 199-312 103-221 (244)
79 PF14681 UPRTase: Uracil phosp 98.4 4.5E-06 9.7E-11 76.8 11.6 113 198-312 67-185 (207)
80 TIGR01251 ribP_PPkin ribose-ph 98.1 2.9E-05 6.3E-10 75.6 11.3 128 21-194 169-298 (308)
81 KOG0572|consensus 97.7 8.6E-05 1.9E-09 73.1 7.0 88 197-284 290-392 (474)
82 PRK02812 ribose-phosphate pyro 97.6 0.0039 8.5E-08 61.4 16.9 136 201-338 22-176 (330)
83 PRK03092 ribose-phosphate pyro 97.5 0.004 8.7E-08 60.7 15.1 125 212-338 1-144 (304)
84 PRK02269 ribose-phosphate pyro 97.5 0.0042 9E-08 61.0 15.2 138 198-338 4-160 (320)
85 PRK01259 ribose-phosphate pyro 97.4 0.0053 1.2E-07 59.9 15.7 132 206-338 6-155 (309)
86 PRK00553 ribose-phosphate pyro 97.4 0.0079 1.7E-07 59.4 16.0 135 201-337 10-163 (332)
87 PRK02458 ribose-phosphate pyro 97.4 0.0098 2.1E-07 58.5 16.7 137 200-338 9-164 (323)
88 PTZ00145 phosphoribosylpyropho 97.2 0.0073 1.6E-07 61.5 14.3 137 198-337 118-275 (439)
89 PRK04923 ribose-phosphate pyro 97.2 0.012 2.5E-07 57.8 15.4 138 198-338 5-162 (319)
90 PF15609 PRTase_2: Phosphoribo 97.2 0.0024 5.2E-08 57.9 9.0 102 181-284 38-157 (191)
91 PRK07199 phosphoribosylpyropho 97.1 0.019 4.1E-07 55.9 15.7 134 204-338 6-158 (301)
92 PLN02369 ribose-phosphate pyro 97.1 0.012 2.5E-07 57.4 13.9 126 211-338 2-146 (302)
93 COG0462 PrsA Phosphoribosylpyr 97.1 0.016 3.5E-07 56.4 14.7 129 207-339 11-160 (314)
94 PRK00934 ribose-phosphate pyro 97.0 0.037 8E-07 53.4 15.9 128 207-337 6-151 (285)
95 PF13793 Pribosyltran_N: N-ter 96.8 0.029 6.2E-07 47.1 11.7 86 202-290 2-91 (116)
96 PLN02297 ribose-phosphate pyro 96.8 0.054 1.2E-06 53.3 15.4 138 199-338 15-179 (326)
97 PRK06827 phosphoribosylpyropho 96.3 0.13 2.9E-06 51.7 15.3 136 199-338 8-198 (382)
98 KOG1017|consensus 91.5 1.1 2.3E-05 41.2 8.2 68 242-312 183-254 (267)
99 PF15610 PRTase_3: PRTase ComF 90.2 4.2 9.1E-05 39.0 11.4 37 245-281 135-171 (274)
100 PRK09162 hypoxanthine-guanine 85.7 3.3 7.2E-05 37.1 7.4 79 19-101 48-133 (181)
101 PF14572 Pribosyl_synth: Phosp 84.8 3.4 7.3E-05 37.5 6.9 99 53-193 75-173 (184)
102 PRK07272 amidophosphoribosyltr 78.5 6.9 0.00015 40.7 7.5 89 19-112 293-405 (484)
103 KOG1448|consensus 78.4 11 0.00024 36.8 8.1 116 211-334 14-149 (316)
104 PRK13811 orotate phosphoribosy 77.0 7 0.00015 34.7 6.2 78 19-103 64-141 (170)
105 COG2179 Predicted hydrolase of 72.9 47 0.001 29.8 10.1 113 148-269 20-152 (175)
106 PLN02440 amidophosphoribosyltr 72.8 13 0.00029 38.5 7.8 76 21-101 285-376 (479)
107 PRK15423 hypoxanthine phosphor 70.4 28 0.00061 31.2 8.4 77 20-100 43-127 (178)
108 PRK08525 amidophosphoribosyltr 70.1 11 0.00024 38.7 6.5 78 22-104 286-379 (445)
109 TIGR01203 HGPRTase hypoxanthin 68.2 29 0.00062 30.6 7.9 77 20-100 35-119 (166)
110 PRK13812 orotate phosphoribosy 66.5 14 0.0003 33.1 5.6 72 20-97 67-139 (176)
111 PF01012 ETF: Electron transfe 66.1 54 0.0012 28.3 9.2 109 71-225 10-118 (164)
112 PRK02304 adenine phosphoribosy 66.1 27 0.00059 30.8 7.4 72 20-96 60-145 (175)
113 TIGR02990 ectoine_eutA ectoine 65.9 52 0.0011 31.0 9.6 22 83-104 110-131 (239)
114 PF06574 FAD_syn: FAD syntheta 65.7 19 0.00041 31.6 6.2 79 141-230 61-146 (157)
115 PLN02238 hypoxanthine phosphor 65.7 32 0.00069 31.1 7.9 76 21-100 45-132 (189)
116 PRK07349 amidophosphoribosyltr 65.3 15 0.00032 38.5 6.2 76 21-101 322-413 (500)
117 PRK00455 pyrE orotate phosphor 64.3 27 0.00059 31.6 7.2 75 19-98 72-146 (202)
118 PF01488 Shikimate_DH: Shikima 63.8 17 0.00036 30.7 5.4 36 244-283 8-43 (135)
119 PRK00129 upp uracil phosphorib 63.2 30 0.00065 31.7 7.3 77 21-101 80-160 (209)
120 PF02875 Mur_ligase_C: Mur lig 63.2 49 0.0011 25.5 7.6 63 250-313 13-84 (91)
121 COG0034 PurF Glutamine phospho 63.2 17 0.00036 37.5 6.0 73 19-100 291-383 (470)
122 KOG1503|consensus 63.1 1.3E+02 0.0028 28.8 11.3 135 200-337 9-161 (354)
123 TIGR01134 purF amidophosphorib 61.2 29 0.00063 35.6 7.5 75 22-101 284-374 (442)
124 PRK09246 amidophosphoribosyltr 60.0 20 0.00043 37.5 6.1 75 21-100 303-393 (501)
125 PLN02501 digalactosyldiacylgly 59.9 95 0.0021 34.3 11.2 137 61-225 322-463 (794)
126 PRK08341 amidophosphoribosyltr 59.3 26 0.00056 36.1 6.7 74 23-101 283-370 (442)
127 TIGR01091 upp uracil phosphori 59.2 43 0.00093 30.6 7.6 77 21-101 78-158 (207)
128 TIGR01367 pyrE_Therm orotate p 59.2 43 0.00092 30.2 7.4 72 19-98 66-138 (187)
129 PRK06781 amidophosphoribosyltr 58.7 20 0.00043 37.3 5.8 77 20-101 292-384 (471)
130 PRK05793 amidophosphoribosyltr 58.0 20 0.00044 37.1 5.7 81 19-104 296-392 (469)
131 COG2185 Sbm Methylmalonyl-CoA 57.8 22 0.00048 31.0 5.0 46 263-309 79-124 (143)
132 TIGR00640 acid_CoA_mut_C methy 57.5 23 0.0005 30.1 5.1 49 260-309 66-114 (132)
133 TIGR01090 apt adenine phosphor 56.4 47 0.001 29.2 7.1 74 21-99 56-143 (169)
134 PRK02277 orotate phosphoribosy 56.2 38 0.00083 30.8 6.7 78 18-100 92-175 (200)
135 COG0634 Hpt Hypoxanthine-guani 55.8 70 0.0015 28.9 8.0 49 47-99 77-127 (178)
136 cd04732 HisA HisA. Phosphorib 53.6 1.8E+02 0.0038 26.5 11.6 71 141-224 145-215 (234)
137 PRK11595 DNA utilization prote 53.4 32 0.00068 31.9 5.7 74 21-99 133-221 (227)
138 PRK07631 amidophosphoribosyltr 51.6 29 0.00063 36.1 5.6 76 21-101 293-384 (475)
139 PLN02293 adenine phosphoribosy 51.4 67 0.0015 29.0 7.4 73 21-98 72-158 (187)
140 smart00450 RHOD Rhodanese Homo 49.5 33 0.00072 25.7 4.5 34 246-282 54-87 (100)
141 COG2185 Sbm Methylmalonyl-CoA 47.8 37 0.00079 29.6 4.8 34 62-99 64-98 (143)
142 PRK09123 amidophosphoribosyltr 45.7 95 0.0021 32.4 8.3 77 19-100 303-395 (479)
143 cd01529 4RHOD_Repeats Member o 45.5 38 0.00083 26.2 4.3 33 247-282 55-87 (96)
144 cd00158 RHOD Rhodanese Homolog 45.3 42 0.0009 24.9 4.4 35 246-283 48-82 (89)
145 TIGR00336 pyrE orotate phospho 45.1 98 0.0021 27.3 7.3 74 18-96 61-139 (173)
146 PF00156 Pribosyltran: Phospho 43.7 35 0.00076 27.6 4.0 78 20-101 36-124 (125)
147 PRK13810 orotate phosphoribosy 43.1 64 0.0014 29.2 5.9 76 22-103 84-159 (187)
148 cd01965 Nitrogenase_MoFe_beta_ 43.1 48 0.001 33.6 5.7 37 245-285 296-332 (428)
149 PRK13809 orotate phosphoribosy 43.0 82 0.0018 29.0 6.6 75 18-97 74-150 (206)
150 cd01444 GlpE_ST GlpE sulfurtra 42.2 40 0.00088 25.8 4.0 33 247-282 55-87 (96)
151 PRK06031 phosphoribosyltransfe 41.2 79 0.0017 29.7 6.4 72 21-96 94-185 (233)
152 PRK14476 nitrogenase molybdenu 40.9 41 0.00088 34.7 4.8 36 246-285 309-344 (455)
153 COG0856 Orotate phosphoribosyl 39.9 1.3E+02 0.0029 27.3 7.2 73 22-99 97-175 (203)
154 KOG0814|consensus 39.6 34 0.00074 31.1 3.4 44 240-286 23-66 (237)
155 PTZ00271 hypoxanthine-guanine 39.4 1.1E+02 0.0024 28.3 7.0 74 22-99 68-152 (211)
156 PRK14093 UDP-N-acetylmuramoyla 39.4 3.6E+02 0.0077 27.7 11.5 73 145-220 390-464 (479)
157 PF10662 PduV-EutP: Ethanolami 39.3 51 0.0011 28.6 4.4 39 256-297 100-138 (143)
158 PRK12560 adenine phosphoribosy 38.6 1E+02 0.0022 27.7 6.5 75 19-98 59-147 (187)
159 cd04731 HisF The cyclase subun 38.3 3.2E+02 0.0069 25.1 11.6 74 141-226 148-221 (243)
160 PRK05205 bifunctional pyrimidi 38.0 1.1E+02 0.0023 27.1 6.4 77 21-101 41-132 (176)
161 PF09752 DUF2048: Uncharacteri 38.0 83 0.0018 31.5 6.2 76 83-211 113-188 (348)
162 COG1922 WecG Teichoic acid bio 37.8 1E+02 0.0022 29.5 6.5 140 149-314 31-175 (253)
163 PRK11930 putative bifunctional 37.6 4.3E+02 0.0093 29.2 12.4 154 145-310 380-540 (822)
164 PRK07847 amidophosphoribosyltr 37.6 93 0.002 32.7 6.8 75 22-101 313-403 (510)
165 cd01715 ETF_alpha The electron 36.2 1.2E+02 0.0026 26.3 6.5 67 149-225 45-111 (168)
166 COG3473 Maleate cis-trans isom 36.2 2.5E+02 0.0054 26.4 8.5 97 83-225 108-208 (238)
167 cd05014 SIS_Kpsf KpsF-like pro 36.0 1.3E+02 0.0029 24.3 6.4 72 20-98 9-80 (128)
168 TIGR03572 WbuZ glycosyl amidat 35.7 2.3E+02 0.005 25.9 8.5 122 146-281 34-172 (232)
169 cd01080 NAD_bind_m-THF_DH_Cycl 35.4 2.2E+02 0.0047 25.2 8.0 58 244-311 40-98 (168)
170 cd01714 ETF_beta The electron 34.4 1.6E+02 0.0035 26.6 7.2 68 147-224 68-138 (202)
171 PF02633 Creatininase: Creatin 34.2 2.3E+02 0.0049 26.2 8.3 82 75-193 37-126 (237)
172 TIGR01809 Shik-DH-AROM shikima 34.1 76 0.0017 30.3 5.2 35 245-283 122-156 (282)
173 cd01518 RHOD_YceA Member of th 34.0 78 0.0017 24.7 4.5 33 247-282 60-92 (101)
174 cd01523 RHOD_Lact_B Member of 33.9 68 0.0015 24.9 4.1 31 247-281 60-90 (100)
175 PF06300 Tsp45I: Tsp45I type I 33.5 5.8 0.00013 37.2 -2.5 54 75-160 53-106 (261)
176 cd01981 Pchlide_reductase_B Pc 33.0 3.3E+02 0.0072 27.5 9.9 135 142-284 179-334 (430)
177 COG1184 GCD2 Translation initi 32.2 55 0.0012 32.1 3.8 51 260-310 128-180 (301)
178 PRK04537 ATP-dependent RNA hel 31.9 1.5E+02 0.0034 31.3 7.5 60 247-312 256-319 (572)
179 cd02071 MM_CoA_mut_B12_BD meth 31.8 1.1E+02 0.0024 25.2 5.3 49 261-310 64-112 (122)
180 PF02142 MGS: MGS-like domain 31.8 49 0.0011 26.0 2.9 48 257-308 16-68 (95)
181 COG0784 CheY FOG: CheY-like re 30.9 2.6E+02 0.0056 21.9 7.2 57 246-311 3-62 (130)
182 cd01528 RHOD_2 Member of the R 30.6 94 0.002 24.2 4.4 33 247-282 57-89 (101)
183 PRK05562 precorrin-2 dehydroge 30.3 1.5E+02 0.0033 27.6 6.4 45 239-291 16-61 (223)
184 PRK12769 putative oxidoreducta 29.6 1.8E+02 0.0039 31.2 7.7 57 245-305 465-525 (654)
185 cd01519 RHOD_HSP67B2 Member of 29.5 93 0.002 24.2 4.2 33 247-282 65-97 (106)
186 cd01532 4RHOD_Repeat_1 Member 29.4 81 0.0018 24.3 3.8 33 247-282 49-83 (92)
187 PRK00748 1-(5-phosphoribosyl)- 28.7 4.4E+02 0.0096 23.8 10.5 124 143-282 31-166 (233)
188 PTZ00149 hypoxanthine phosphor 28.7 2.6E+02 0.0057 26.4 7.7 50 47-100 134-185 (241)
189 cd04820 PA_M28_1_1 PA_M28_1_1: 28.6 1.1E+02 0.0025 26.3 4.8 40 244-283 46-93 (137)
190 cd04731 HisF The cyclase subun 28.1 4.2E+02 0.009 24.3 9.0 25 143-167 28-52 (243)
191 cd04814 PA_M28_1 PA_M28_1: Pro 28.1 1.2E+02 0.0026 26.3 4.9 41 244-284 44-98 (142)
192 COG2100 Predicted Fe-S oxidore 28.0 1.1E+02 0.0023 30.6 5.0 50 263-312 176-227 (414)
193 COG1236 YSH1 Predicted exonucl 27.8 1E+02 0.0022 31.5 5.1 49 59-108 177-229 (427)
194 cd04732 HisA HisA. Phosphorib 27.8 4.6E+02 0.0099 23.7 11.4 126 143-282 30-166 (234)
195 PRK01033 imidazole glycerol ph 27.7 5.1E+02 0.011 24.3 12.3 73 141-225 151-223 (258)
196 KOG1377|consensus 27.7 1.2E+02 0.0026 29.0 5.1 152 149-312 46-211 (261)
197 KOG1643|consensus 27.7 63 0.0014 30.0 3.2 59 100-174 44-102 (247)
198 cd01480 vWA_collagen_alpha_1-V 27.5 1.4E+02 0.003 26.3 5.4 58 248-307 110-170 (186)
199 PRK00676 hemA glutamyl-tRNA re 27.3 1.2E+02 0.0025 30.3 5.3 36 244-283 170-205 (338)
200 PRK11776 ATP-dependent RNA hel 27.2 2.7E+02 0.0059 28.2 8.2 60 247-312 241-304 (460)
201 PRK08558 adenine phosphoribosy 27.1 1.5E+02 0.0031 27.9 5.7 73 21-98 121-209 (238)
202 cd01527 RHOD_YgaP Member of th 27.1 98 0.0021 23.9 3.9 32 248-282 54-85 (99)
203 PRK08373 aspartate kinase; Val 27.0 3.2E+02 0.0069 27.2 8.3 22 138-159 108-129 (341)
204 smart00851 MGS MGS-like domain 26.4 86 0.0019 24.3 3.5 46 257-308 16-63 (90)
205 PF01972 SDH_sah: Serine dehyd 26.3 5.4E+02 0.012 25.0 9.3 97 145-266 38-137 (285)
206 PRK06388 amidophosphoribosyltr 26.0 2.1E+02 0.0046 29.8 7.1 73 24-101 304-392 (474)
207 PRK14974 cell division protein 25.6 1.7E+02 0.0038 28.9 6.2 122 183-309 157-289 (336)
208 cd01524 RHOD_Pyr_redox Member 25.6 1.3E+02 0.0028 22.9 4.3 31 248-282 51-81 (90)
209 PLN02962 hydroxyacylglutathion 25.4 98 0.0021 29.3 4.2 48 247-297 34-82 (251)
210 PLN02389 biotin synthase 25.3 1.6E+02 0.0036 29.6 6.0 41 263-306 154-194 (379)
211 cd03412 CbiK_N Anaerobic cobal 25.3 1.1E+02 0.0023 25.7 4.1 48 262-310 56-109 (127)
212 TIGR01470 cysG_Nterm siroheme 25.2 2E+02 0.0043 26.2 6.1 35 245-284 6-40 (205)
213 cd06330 PBP1_Arsenic_SBP_like 24.7 4.4E+02 0.0096 25.0 8.8 161 143-308 79-251 (346)
214 COG1134 TagH ABC-type polysacc 24.6 96 0.0021 29.5 3.9 51 250-307 167-220 (249)
215 PRK08385 nicotinate-nucleotide 24.5 2.9E+02 0.0062 26.7 7.3 59 247-308 201-260 (278)
216 PRK03803 murD UDP-N-acetylmura 24.1 5.6E+02 0.012 25.8 9.8 70 147-218 363-434 (448)
217 PRK01033 imidazole glycerol ph 24.0 6E+02 0.013 23.8 12.8 70 143-225 31-100 (258)
218 PRK10590 ATP-dependent RNA hel 23.9 2.6E+02 0.0057 28.4 7.4 84 248-337 245-332 (456)
219 cd06375 PBP1_mGluR_groupII Lig 23.8 7.3E+02 0.016 25.2 10.6 144 140-290 114-270 (458)
220 PLN02160 thiosulfate sulfurtra 23.7 1.3E+02 0.0027 25.5 4.2 33 247-282 80-112 (136)
221 TIGR01743 purR_Bsub pur operon 23.5 1.9E+02 0.0041 27.9 5.8 72 21-96 138-225 (268)
222 cd01525 RHOD_Kc Member of the 23.4 1.4E+02 0.003 23.2 4.2 32 248-282 65-96 (105)
223 cd01522 RHOD_1 Member of the R 23.4 3.8E+02 0.0082 21.6 7.0 80 142-223 1-90 (117)
224 cd04234 AAK_AK AAK_AK: Amino A 23.3 4.3E+02 0.0094 24.1 8.1 21 138-158 56-76 (227)
225 KOG2355|consensus 23.0 1.5E+02 0.0034 28.0 4.8 75 211-290 128-210 (291)
226 PF04015 DUF362: Domain of unk 23.0 2.6E+02 0.0057 25.0 6.4 78 257-334 18-104 (206)
227 PRK02910 light-independent pro 22.7 5.5E+02 0.012 26.9 9.6 133 143-283 176-325 (519)
228 PRK05627 bifunctional riboflav 22.5 5.6E+02 0.012 25.0 9.0 78 142-230 70-154 (305)
229 PRK11070 ssDNA exonuclease Rec 22.4 4.3E+02 0.0092 28.3 8.7 69 60-164 68-136 (575)
230 PRK00258 aroE shikimate 5-dehy 22.2 1.8E+02 0.0038 27.6 5.4 36 245-284 120-155 (278)
231 cd01533 4RHOD_Repeat_2 Member 22.1 1.6E+02 0.0036 23.2 4.4 33 247-282 65-98 (109)
232 COG0773 MurC UDP-N-acetylmuram 22.1 9.1E+02 0.02 25.2 13.0 153 26-220 288-457 (459)
233 COG0287 TyrA Prephenate dehydr 22.1 74 0.0016 30.6 2.7 131 142-311 13-146 (279)
234 PRK01297 ATP-dependent RNA hel 22.0 4.4E+02 0.0095 26.9 8.6 84 249-338 336-423 (475)
235 TIGR02981 phageshock_pspE phag 21.8 1.9E+02 0.0041 23.1 4.7 31 248-281 58-88 (101)
236 cd01447 Polysulfide_ST Polysul 21.8 1E+02 0.0022 23.8 3.0 33 247-282 60-92 (103)
237 COG0169 AroE Shikimate 5-dehyd 21.6 1.8E+02 0.0038 28.2 5.2 35 245-283 123-157 (283)
238 PRK05320 rhodanese superfamily 21.6 1.6E+02 0.0035 27.9 4.9 34 246-282 173-206 (257)
239 COG1751 Uncharacterized conser 21.4 1.6E+02 0.0035 26.2 4.4 89 249-344 29-126 (186)
240 PRK10481 hypothetical protein; 21.3 6.8E+02 0.015 23.4 11.0 75 197-298 129-203 (224)
241 PRK03815 murD UDP-N-acetylmura 21.2 8.5E+02 0.018 24.5 12.1 148 24-217 238-388 (401)
242 PF04914 DltD_C: DltD C-termin 21.1 2.1E+02 0.0046 24.4 5.0 73 76-181 33-112 (130)
243 PRK10637 cysG siroheme synthas 20.8 2.3E+02 0.005 29.1 6.2 44 241-292 5-49 (457)
244 PRK13940 glutamyl-tRNA reducta 20.8 1.5E+02 0.0033 30.1 4.8 36 244-283 177-212 (414)
245 PLN02469 hydroxyacylglutathion 20.4 1.7E+02 0.0037 27.6 4.8 53 241-298 15-68 (258)
246 TIGR01740 pyrF orotidine 5'-ph 20.4 3.1E+02 0.0067 24.9 6.4 43 252-297 51-95 (213)
247 PF00072 Response_reg: Respons 20.1 3.2E+02 0.0069 20.8 5.7 55 250-307 45-100 (112)
248 cd06374 PBP1_mGluR_groupI Liga 20.0 4.6E+02 0.01 26.6 8.3 148 139-289 125-284 (472)
No 1
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-93 Score=679.16 Aligned_cols=303 Identities=53% Similarity=0.783 Sum_probs=292.9
Q ss_pred ccCHHHHHHHHHHhCCCccCCCccccCCCCceeEEeCCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCeEEEE
Q psy17482 20 KASHFFAKQNAEYKGVQRYIPPRLSPEDRGQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAV 99 (353)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~dGE~~v~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~i~~v 99 (353)
++++.||+++|++||++ ++++.+.+|||||++|+++|+|||+||||+||+++|+||+|||||+|+||||++||++||+|
T Consensus 11 ~s~~~La~~ia~~l~~~-l~~~~~~rF~DGE~~V~i~EsVrg~dVfI~qs~~~pvnd~lmELLi~idA~k~asA~~It~V 89 (314)
T COG0462 11 SSNPELAEKIAKRLGIP-LGKVEVKRFPDGEIYVRIEESVRGKDVFIIQSTSPPVNDNLMELLIMIDALKRASAKRITAV 89 (314)
T ss_pred CCCHHHHHHHHHHhCCC-cccceeEEcCCCcEEEEecccccCCeEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCceEEEE
Confidence 68999999999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCccccccccCCCCCCCCchhHHHHhhhccccccCCCCcchHHHHHHHHHHcCCCEEEEEcCChhHHhcccCccccc
Q psy17482 100 IPCFPYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDN 179 (353)
Q Consensus 100 iPY~~YsRqDr~~~~~~~~~~~~~~~~~~~~~~~~kf~~~e~isak~vA~lL~~~g~d~VitvDlHs~~~~~~F~ip~~~ 179 (353)
+||||||||||+++ +|||+|+|++|+||+.+|+|+|+|+|+|++|+|+||++|++|
T Consensus 90 iPY~gYARQDk~~~------------------------~repIsaklvA~lL~~aG~drv~TvDlH~~qiqgfFdipvdn 145 (314)
T COG0462 90 IPYFGYARQDKAFK------------------------PREPISAKLVANLLETAGADRVLTVDLHAPQIQGFFDIPVDN 145 (314)
T ss_pred eecchhhccCcccC------------------------CCCCEeHHHHHHHHHHcCCCeEEEEcCCchhhcccCCCcccc
Confidence 99999999998878 899999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeec-CCCceEEEEeecCCCCCEEEEEeccc
Q psy17482 180 LYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERK-KANEVASMVLVGDVKDRVAILVDDMA 258 (353)
Q Consensus 180 l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~-~~~~v~~~~~~gdv~Gk~VlIVDDII 258 (353)
+++.|.+++|+++.. +.++++|||||.||++||+.+|+.||.++++++|+|. .+++++.+.+.|||+||+|+||||||
T Consensus 146 l~a~p~l~~~~~~~~-~~~d~vVVSPD~Ggv~RAr~~A~~L~~~~a~i~K~R~~~~~~v~~~~~~gdV~gk~~iiVDDiI 224 (314)
T COG0462 146 LYAAPLLAEYIREKY-DLDDPVVVSPDKGGVKRARALADRLGAPLAIIDKRRDSSPNVVEVMNLIGDVEGKDVVIVDDII 224 (314)
T ss_pred ccchHHHHHHHHHhc-CCCCcEEECCCccHHHHHHHHHHHhCCCEEEEEEeecCCCCeEEEeecccccCCCEEEEEeccc
Confidence 999999999999875 4567999999999999999999999999999999995 88888888999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcCCCEEEEecCCCCCCCCCCCCCeeEEehHHHHHHHHHHH
Q psy17482 259 DTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRRT 338 (353)
Q Consensus 259 ~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~id~ii~TnTi~~~~~~~~~~ki~~lsva~lla~~i~~~ 338 (353)
+||||+.+|++.|+++||++|+++||||+|++++.++++++.+++|++|||||++ +.+.++|++++||+|+|||+|+|+
T Consensus 225 dTgGTi~~Aa~~Lk~~GAk~V~a~~tH~vfs~~a~~~l~~~~i~~vivTnTi~~~-~~~~~~~~~~isva~liaeaI~ri 303 (314)
T COG0462 225 DTGGTIAKAAKALKERGAKKVYAAATHGVFSGAALERLEASAIDEVIVTDTIPLP-EKKKIPKVSVISVAPLIAEAIRRI 303 (314)
T ss_pred cccHHHHHHHHHHHHCCCCeEEEEEEchhhChHHHHHHhcCCCCEEEEeCCcccc-cccccCceEEEEhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998889999999999998 556788999999999999999999
Q ss_pred hCCCCcccccc
Q psy17482 339 HNGESVSYLFS 349 (353)
Q Consensus 339 ~~~~s~~~l~~ 349 (353)
|+++|+|.||+
T Consensus 304 ~~~~svs~lf~ 314 (314)
T COG0462 304 HNGESVSSLFD 314 (314)
T ss_pred HcCCChhHhhC
Confidence 99999999985
No 2
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=2.3e-83 Score=621.45 Aligned_cols=305 Identities=46% Similarity=0.720 Sum_probs=287.8
Q ss_pred ccCHHHHHHHHHHhCCCccCCCccccCCCCceeEEeCCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCeEEEE
Q psy17482 20 KASHFFAKQNAEYKGVQRYIPPRLSPEDRGQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAV 99 (353)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~dGE~~v~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~i~~v 99 (353)
++++.||++||+.||++ ++++++.+|||||++|+++++|||+|||||||++.|+||++||||++++|||++||++|++|
T Consensus 13 ~~~~~La~~ia~~lg~~-l~~~~~~~FpdGE~~v~i~~~v~g~~V~iiqs~~~p~nd~lmeLl~~~~alr~~~a~~i~~V 91 (319)
T PRK04923 13 NANKPLAQSICKELGVR-MGKALVTRFSDGEVQVEIEESVRRQEVFVIQPTCAPSAENLMELLVLIDALKRASAASVTAV 91 (319)
T ss_pred CCCHHHHHHHHHHhCCc-eeeeEEEECCCCCEEEEECCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHcCCcEEEEE
Confidence 47899999999999999 78999999999999999999999999999999998999999999999999999999999999
Q ss_pred eeCCCccccccccCCCCCCCCchhHHHHhhhccccccCCCCcchHHHHHHHHHHcCCCEEEEEcCChhHHhcccCccccc
Q psy17482 100 IPCFPYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDN 179 (353)
Q Consensus 100 iPY~~YsRqDr~~~~~~~~~~~~~~~~~~~~~~~~kf~~~e~isak~vA~lL~~~g~d~VitvDlHs~~~~~~F~ip~~~ 179 (353)
+||||||||||++.. +|+|+++|.+|+||+++|+|+|+++|+|++++++||++|++|
T Consensus 92 iPYl~YaRQDr~~~~-----------------------~~~~isak~va~ll~~~g~d~vitvD~H~~~~~~~f~~p~~~ 148 (319)
T PRK04923 92 IPYFGYSRQDRRMRS-----------------------SRVPITAKVAAKMISAMGADRVLTVDLHADQIQGFFDVPVDN 148 (319)
T ss_pred eeccccccccccccC-----------------------CCCCccHHHHHHHHHhcCCCEEEEEeCChHHHHhhcCCCcee
Confidence 999999999999950 478999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcC-CcEEEEEEeecCCCceEEEEeecCCCCCEEEEEeccc
Q psy17482 180 LYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLN-VEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMA 258 (353)
Q Consensus 180 l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg-~~~~~l~K~R~~~~~v~~~~~~gdv~Gk~VlIVDDII 258 (353)
+++.+.+++||.+.. +.++++||+||.||++||+.+|+.|+ .++.+++|+|...+..+.+.+.|+++||+|+|||||+
T Consensus 149 l~~~~~l~~~i~~~~-~~~~~vVVsPD~Ga~~rA~~lA~~L~~~~~~~~~K~R~~~~~~~~~~~~gdv~Gr~viIVDDIi 227 (319)
T PRK04923 149 VYASPLLLADIWRAY-GTDNLIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRANVATVMNIIGDVQGKTCVLVDDLV 227 (319)
T ss_pred eeChHHHHHHHHHhc-CCCCCEEEEECCchHHHHHHHHHHcCCCCEEEeccccCCCCceEEEecccCCCCCEEEEEeccc
Confidence 999999999997653 34789999999999999999999998 8999999999765555556678999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcCCCEEEEecCCCCCCCCCCCCCeeEEehHHHHHHHHHHH
Q psy17482 259 DTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRRT 338 (353)
Q Consensus 259 ~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~id~ii~TnTi~~~~~~~~~~ki~~lsva~lla~~i~~~ 338 (353)
|||+||.++++.|+++||++|+++||||+|+++|.++|.++++++|++|||||++++.+.++|++++||+++||++|+++
T Consensus 228 dTG~Tl~~aa~~Lk~~GA~~V~~~~THgvfs~~a~~~l~~s~i~~iv~Tdtip~~~~~~~~~k~~~isva~lla~~i~~~ 307 (319)
T PRK04923 228 DTAGTLCAAAAALKQRGALKVVAYITHPVLSGPAVDNINNSQLDELVVTDTIPLSEAARACAKIRQLSVAELLAETIRRI 307 (319)
T ss_pred CchHHHHHHHHHHHHCCCCEEEEEEECcccCchHHHHHhhCCCCEEEEeCCccCchhhcccCCeEEEEhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999976656789999999999999999999
Q ss_pred hCCCCcccccc
Q psy17482 339 HNGESVSYLFS 349 (353)
Q Consensus 339 ~~~~s~~~l~~ 349 (353)
|+++|+++||+
T Consensus 308 ~~~~s~~~l~~ 318 (319)
T PRK04923 308 AFGESVSSLYV 318 (319)
T ss_pred HcCCCHHHhcC
Confidence 99999999996
No 3
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=2.5e-82 Score=615.29 Aligned_cols=305 Identities=44% Similarity=0.682 Sum_probs=286.1
Q ss_pred ccCHHHHHHHHHHhCCCccCCCccccCCCCceeEEeCCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCeEEEE
Q psy17482 20 KASHFFAKQNAEYKGVQRYIPPRLSPEDRGQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAV 99 (353)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~dGE~~v~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~i~~v 99 (353)
.+++.||++||++||++ ++++++.+|||||++|++.++|||+|||||||+++|+||++||||++++|||++||++||+|
T Consensus 12 ~~~~~la~~ia~~lg~~-l~~~~~~~FpdGE~~v~i~~~vrg~dV~iv~s~~~~~nd~lmelll~~~alr~~~a~~i~~V 90 (320)
T PRK02269 12 SSNKELAEKVAQEIGIE-LGKSSVRQFSDGEIQVNIEESIRGHHVFILQSTSSPVNDNLMEILIMVDALKRASAESINVV 90 (320)
T ss_pred CCCHHHHHHHHHHhCCc-eeeeEEEECCCCCEEEEECCCCCCCEEEEEecCCCCccchHHHHHHHHHHHHHhCCCeEEEE
Confidence 47899999999999999 78999999999999999999999999999999988899999999999999999999999999
Q ss_pred eeCCCccccccccCCCCCCCCchhHHHHhhhccccccCCCCcchHHHHHHHHHHcCCCEEEEEcCChhHHhcccCccccc
Q psy17482 100 IPCFPYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDN 179 (353)
Q Consensus 100 iPY~~YsRqDr~~~~~~~~~~~~~~~~~~~~~~~~kf~~~e~isak~vA~lL~~~g~d~VitvDlHs~~~~~~F~ip~~~ 179 (353)
+||||||||||++. +|||+++|++|+||+.+|+|+|+++|+|++++++||++|++|
T Consensus 91 ~PYl~YaRQDr~~~------------------------~~e~isak~~a~ll~~~g~d~vit~D~H~~~~~~~f~~p~~~ 146 (320)
T PRK02269 91 MPYYGYARQDRKAR------------------------SREPITSKLVANMLEVAGVDRLLTVDLHAAQIQGFFDIPVDH 146 (320)
T ss_pred EeccccchhhcccC------------------------CCCCchHHHHHHHHhhcCCCEEEEECCChHHHhccccCCchh
Confidence 99999999999999 899999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeecCC--CceEEEEeecCCCCCEEEEEecc
Q psy17482 180 LYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKA--NEVASMVLVGDVKDRVAILVDDM 257 (353)
Q Consensus 180 l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~--~~v~~~~~~gdv~Gk~VlIVDDI 257 (353)
+.+.+.+++|+.++..+.++++||+||.||++||+.+|+.+|.|+.+++|+|... +....+.+.|+++||+|||||||
T Consensus 147 l~~~p~l~~~i~~~~~~~~~~vvVsPd~G~~~~A~~lA~~lg~~~~~~~k~r~~~~~~~~~~~~~~gdv~Gr~viIVDDI 226 (320)
T PRK02269 147 LMGAPLIADYFDRRGLVGDDVVVVSPDHGGVTRARKLAQFLKTPIAIIDKRRSVDKMNTSEVMNIIGNVKGKKCILIDDM 226 (320)
T ss_pred hhhHHHHHHHHHHhCCCCCCcEEEEECccHHHHHHHHHHHhCCCEEEEEecccCCCCceeEEEEeccccCCCEEEEEeee
Confidence 9999999999987643457899999999999999999999999999999887632 33334567889999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcCCCEEEEecCCCCCCCCCCCCCeeEEehHHHHHHHHHH
Q psy17482 258 ADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRR 337 (353)
Q Consensus 258 I~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~id~ii~TnTi~~~~~~~~~~ki~~lsva~lla~~i~~ 337 (353)
+|||+|+.++++.|+++||++|+++||||+|+++|+++|.++++++|++|||||+++. ..++|++++||+++|||+|++
T Consensus 227 idTG~Tl~~aa~~Lk~~GA~~V~~~~tHglf~~~a~~~l~~~~i~~iv~Tdti~~~~~-~~~~k~~~isva~~la~~i~~ 305 (320)
T PRK02269 227 IDTAGTICHAADALAEAGATEVYASCTHPVLSGPALDNIQKSAIEKLVVLDTIYLPEE-RLIDKIEQISIADLLGEAIIR 305 (320)
T ss_pred cCcHHHHHHHHHHHHHCCCCEEEEEEECcccCchHHHHHHhCCCCEEEEeCCCCCccc-cccCCeEEEEhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998754 457899999999999999999
Q ss_pred HhCCCCccccccC
Q psy17482 338 THNGESVSYLFSN 350 (353)
Q Consensus 338 ~~~~~s~~~l~~~ 350 (353)
+|+++|+++||+.
T Consensus 306 ~~~~~s~~~~~~~ 318 (320)
T PRK02269 306 IHEKRPLSPLFEM 318 (320)
T ss_pred HHcCCCHHHHhcC
Confidence 9999999999963
No 4
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=3.2e-82 Score=629.22 Aligned_cols=304 Identities=45% Similarity=0.725 Sum_probs=289.8
Q ss_pred ccCHHHHHHHHHHhCCCccCCCccccCCCCceeEEeCCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCeEEEE
Q psy17482 20 KASHFFAKQNAEYKGVQRYIPPRLSPEDRGQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAV 99 (353)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~dGE~~v~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~i~~v 99 (353)
.+++.||++||+.||++ ++++.+.+|||||++|++.++|||+|||||||+++|+||++||||+|++|||++||++||+|
T Consensus 126 s~~~~LA~~IA~~Lg~~-l~~~~~~rFpDGE~~Vri~e~VrG~dV~IVqS~~~pvNd~LmELLllidAlr~agAkrItlV 204 (439)
T PTZ00145 126 SSNPLLSKNIADHLGTI-LGRVHLKRFADGEVSMQFLESIRGKDVYIIQPTCPPVNENLIELLLMISTCRRASAKKITAV 204 (439)
T ss_pred CCCHHHHHHHHHHhCCC-ceeeEEEECCCCCEEEEECCCcCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHhccCeEEEE
Confidence 47899999999999999 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCccccccccCCCCCCCCchhHHHHhhhccccccCCCCcchHHHHHHHHHHcCCCEEEEEcCChhHHhcccC--ccc
Q psy17482 100 IPCFPYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFD--IPV 177 (353)
Q Consensus 100 iPY~~YsRqDr~~~~~~~~~~~~~~~~~~~~~~~~kf~~~e~isak~vA~lL~~~g~d~VitvDlHs~~~~~~F~--ip~ 177 (353)
+||||||||||++. +|||+++|++|+||+.+|+|+|++||+|++++++||+ +|+
T Consensus 205 iPYl~YaRQDR~~~------------------------~gepIsak~vA~lL~~~G~d~VitvDlHs~~i~~fF~~~iPv 260 (439)
T PTZ00145 205 IPYYGYARQDRKLS------------------------SRVPISAADVARMIEAMGVDRVVAIDLHSGQIQGFFGPRVPV 260 (439)
T ss_pred eecccchheecccC------------------------CCCChhHHHHHHHHHHcCCCeEEEEecChHHHHhhcCCCccc
Confidence 99999999999998 8999999999999999999999999999999999996 999
Q ss_pred cccccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcC------CcEEEEEEeecCCCceEEEEeecCCCCCEE
Q psy17482 178 DNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLN------VEFALIHKERKKANEVASMVLVGDVKDRVA 251 (353)
Q Consensus 178 ~~l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg------~~~~~l~K~R~~~~~v~~~~~~gdv~Gk~V 251 (353)
+|+.+.+.+++|+.+. +..++|+|+||.||.+||+.+|+.|+ ++++++.|+|...++++.+.+.|+++||+|
T Consensus 261 dnl~a~~~~a~~i~~~--~l~~pVVVsPD~Ga~~RAr~~A~~L~~~~~~~~~~avl~K~R~~~~~v~~~~lvgdV~Gk~v 338 (439)
T PTZ00145 261 DNLEAQLIGLDYFTKK--DLYKPVIVSPDAGGVYRARKFQDGLNHRGISDCGIAMLIKQRTKPNEIEKMDLVGNVYDSDV 338 (439)
T ss_pred ccccccHHHHHHHhhc--CCCccEEEccCcchHHHHHHHHHHhccccccCCCEEEEEeecCCCCceEEEeccCCCCCCEE
Confidence 9999999999999753 34689999999999999999999997 799999999988777777778899999999
Q ss_pred EEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcCCCEEEEecCCCCCCCCCCCCCeeEEehHHHH
Q psy17482 252 ILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMF 331 (353)
Q Consensus 252 lIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~id~ii~TnTi~~~~~~~~~~ki~~lsva~ll 331 (353)
||||||||||+|+.+|++.|+++||++|+++||||+|+++|.++|.++++++|++|||||++++.+.++|++++||+++|
T Consensus 339 IIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~~IvvTdTIp~~~~~~~~~k~~visVA~ll 418 (439)
T PTZ00145 339 IIVDDMIDTSGTLCEAAKQLKKHGARRVFAFATHGLFSGPAIERIEASPLEEVVVTDTVKSNKNIDSCKKITKLSVSVLV 418 (439)
T ss_pred EEEcceeCcHHHHHHHHHHHHHcCCCEEEEEEEcccCChhHHHHHhcCCCCEEEEeCCCcCchhhcccCCeEEEEhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997665668999999999999
Q ss_pred HHHHHHHhCCCCccccccC
Q psy17482 332 AEAVRRTHNGESVSYLFSN 350 (353)
Q Consensus 332 a~~i~~~~~~~s~~~l~~~ 350 (353)
|++|+++|+++|++.||+-
T Consensus 419 AeaI~~i~~~~s~s~lf~~ 437 (439)
T PTZ00145 419 ADAIRRIHQKESLNDLFNV 437 (439)
T ss_pred HHHHHHHhcCCCHHHHhCc
Confidence 9999999999999999963
No 5
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=6e-82 Score=614.61 Aligned_cols=303 Identities=37% Similarity=0.559 Sum_probs=286.7
Q ss_pred ccCHHHHHHHHHHhCCCccCCCccccCCCCceeEEeCCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCeEEEE
Q psy17482 20 KASHFFAKQNAEYKGVQRYIPPRLSPEDRGQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAV 99 (353)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~dGE~~v~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~i~~v 99 (353)
.+++.||++||+.||++ ++++++.+|||||++|++.++|||+|||||||+++|+||++||||++++|||++||++||+|
T Consensus 16 ~~~~~La~~ia~~lg~~-l~~~~~~~FpdGE~~v~i~~~vrg~dV~ivqs~~~p~nd~l~eLll~~~alr~~~a~~i~~V 94 (332)
T PRK00553 16 SKAKKLVDSICRKLSMK-PGEIVIQKFADGETYIRFDESVRNKDVVIFQSTCSPVNDSLMELLIAIDALKRGSAKSITAI 94 (332)
T ss_pred CCCHHHHHHHHHHhCCc-eeeeEEEECCCCCEEEEECCCCCCCEEEEEcCCCCCCchHHHHHHHHHHHHHHcCCCeEEEE
Confidence 57899999999999999 78999999999999999999999999999999998999999999999999999999999999
Q ss_pred eeCCCccccccccCCCCCCCCchhHHHHhhhccccccCCCCcchHHHHHHHHHHcCCCEEEEEcCChhHHhcccCccccc
Q psy17482 100 IPCFPYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDN 179 (353)
Q Consensus 100 iPY~~YsRqDr~~~~~~~~~~~~~~~~~~~~~~~~kf~~~e~isak~vA~lL~~~g~d~VitvDlHs~~~~~~F~ip~~~ 179 (353)
+||||||||||++. +|||+++|++|+||+.+|+|+|+++|+|++++++||++|++|
T Consensus 95 iPYl~YaRQDr~~~------------------------~~e~isak~vA~ll~~~g~d~vit~DlH~~~i~~~F~ipv~~ 150 (332)
T PRK00553 95 LPYYGYARQDRKTA------------------------GREPITSKLVADLLTKAGVTRVTLTDIHSDQTQGFFDIPVDI 150 (332)
T ss_pred eeccccchhhcccC------------------------CCCCccHHHHHHHHHhcCCCEEEEEeCChHHHHhhcCCCcce
Confidence 99999999999998 899999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeecCCCceEEEEeecCCCCCEEEEEecccC
Q psy17482 180 LYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMAD 259 (353)
Q Consensus 180 l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~v~~~~~~gdv~Gk~VlIVDDII~ 259 (353)
+.+.+.+++|+.+.. +.++++||+||.||++||+.+|+.+|+|+.+++|+|...+....+.+.|+++||+|+|||||+|
T Consensus 151 l~a~~~~~~~~~~~~-~~~~~vvVsPD~gg~~rA~~lA~~lg~~~~vi~K~r~~~~~~~~~~~~gdv~Gk~VIIVDDIi~ 229 (332)
T PRK00553 151 LRTYHVFLSRVLELL-GKKDLVVVSPDYGGVKRARLIAESLELPLAIIDKRRPKHNVAESINVLGEVKNKNCLIVDDMID 229 (332)
T ss_pred eechHHHHHHHHHhc-CCCCeEEEEECCCcHHHHHHHHHHhCCCEEEEEEecCCcceEeeEEeeccCCCCEEEEEecccc
Confidence 999999999997643 3578999999999999999999999999999999987766655666788999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhc----CCCEEEEecCCCCCCCCCCCCCeeEEehHHHHHHHH
Q psy17482 260 TCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNA----CFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAV 335 (353)
Q Consensus 260 TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s----~id~ii~TnTi~~~~~~~~~~ki~~lsva~lla~~i 335 (353)
||+|+.++++.|+++||++|+++||||+|+++|.++|.++ ++++|++|||+|+++. ..++|++++|||++|||+|
T Consensus 230 TG~Tl~~aa~~Lk~~GA~~V~~~atHglf~~~a~~~l~~~~~~~~i~~iv~Tntip~~~~-~~~~~~~~vsva~~la~~i 308 (332)
T PRK00553 230 TGGTVIAAAKLLKKQKAKKVCVMATHGLFNKNAIQLFDEAFKKKLIDKLFVSNSIPQTKF-EKKPQFKVVDLAHLYEEVL 308 (332)
T ss_pred chHHHHHHHHHHHHcCCcEEEEEEEeeecCchHHHHHHhccccCCCCEEEEeCCccCccc-ccCCCeEEEEhHHHHHHHH
Confidence 9999999999999999999999999999999999999765 8999999999998753 4478999999999999999
Q ss_pred HHHhCCCCcccccc
Q psy17482 336 RRTHNGESVSYLFS 349 (353)
Q Consensus 336 ~~~~~~~s~~~l~~ 349 (353)
+++|+++|++++|.
T Consensus 309 ~~~~~~~s~~~~~~ 322 (332)
T PRK00553 309 LCYANGGSISAIYT 322 (332)
T ss_pred HHHhcCCCHHHHHh
Confidence 99999999999996
No 6
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=7.7e-81 Score=601.05 Aligned_cols=300 Identities=45% Similarity=0.693 Sum_probs=283.0
Q ss_pred HHHHHHHHhCCCccCCCccccCCCCceeEEeCCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCeEEEEeeCCC
Q psy17482 25 FAKQNAEYKGVQRYIPPRLSPEDRGQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPCFP 104 (353)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~f~dGE~~v~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~i~~viPY~~ 104 (353)
||++||+.||++ ++++.+.+|||||++|++.++|||+|||||||+++|+||++||||++++|||++||++||+|+||||
T Consensus 1 la~~ia~~l~~~-l~~~~~~~F~DGE~~vri~~~v~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~~a~~i~~ViPYl~ 79 (304)
T PRK03092 1 LAEEVAKELGVE-VTPTTAYDFANGEIYVRFEESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRASAKRITVVLPFYP 79 (304)
T ss_pred CHHHHHHHhCCc-eeeeEEEECCCCCEEEEECCCCCCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEEeccc
Confidence 689999999999 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCchhHHHHhhhccccccCCCCcchHHHHHHHHHHcCCCEEEEEcCChhHHhcccCccccccccHH
Q psy17482 105 YARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEP 184 (353)
Q Consensus 105 YsRqDr~~~~~~~~~~~~~~~~~~~~~~~~kf~~~e~isak~vA~lL~~~g~d~VitvDlHs~~~~~~F~ip~~~l~a~~ 184 (353)
||||||++. +|||+++|++|+||+.+|+|+|+++|+|++++++||++|++|+++.+
T Consensus 80 YaRQDr~~~------------------------~~e~isak~va~lL~~~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~ 135 (304)
T PRK03092 80 YARQDKKHR------------------------GREPISARLVADLFKTAGADRIMTVDLHTAQIQGFFDGPVDHLFAMP 135 (304)
T ss_pred ccccccccC------------------------CCCCccHHHHHHHHHhcCCCeEEEEecChHHHHhhcCCCeeeEechH
Confidence 999999998 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcC-CcEEEEEEeecCC--CceEEEEeecCCCCCEEEEEecccCCh
Q psy17482 185 AVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLN-VEFALIHKERKKA--NEVASMVLVGDVKDRVAILVDDMADTC 261 (353)
Q Consensus 185 ~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg-~~~~~l~K~R~~~--~~v~~~~~~gdv~Gk~VlIVDDII~TG 261 (353)
.+++||.+.+ +.+++++|+||.||++||+.+|+.++ .++.+++|.|... +......+.++++||+|+|||||++||
T Consensus 136 ~la~~i~~~~-~~~~~vvVspd~Ga~~~a~~la~~L~~~~~~~i~k~R~~~~~~~~~~~~~~~dv~gr~viIVDDIi~TG 214 (304)
T PRK03092 136 LLADYVRDKY-DLDNVTVVSPDAGRVRVAEQWADRLGGAPLAFIHKTRDPTVPNQVVANRVVGDVEGRTCVLVDDMIDTG 214 (304)
T ss_pred HHHHHHHHhc-CCCCcEEEEecCchHHHHHHHHHHcCCCCEEEEEEEcccCCCCceEEEecCcCCCCCEEEEEccccCcH
Confidence 9999997654 34789999999999999999999999 9999999998642 444455678899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcCCCEEEEecCCCCCCCCCCCCCeeEEehHHHHHHHHHHHhCC
Q psy17482 262 GTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRRTHNG 341 (353)
Q Consensus 262 ~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~id~ii~TnTi~~~~~~~~~~ki~~lsva~lla~~i~~~~~~ 341 (353)
+|+.++++.|+++||++|++++|||+|++++.++|.++++++|++|||+|++++ ..++|++++||+++||++|+++|++
T Consensus 215 ~Tl~~aa~~Lk~~Ga~~I~~~~tH~v~~~~a~~~l~~~~~~~i~~t~tip~~~~-~~~~~~~~~sva~~la~~i~~~~~~ 293 (304)
T PRK03092 215 GTIAGAVRALKEAGAKDVIIAATHGVLSGPAAERLKNCGAREVVVTDTLPIPEE-KRFDKLTVLSIAPLLARAIREVFED 293 (304)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEEcccCChHHHHHHHHCCCCEEEEeeeeccchh-hcCCCeEEEEhHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999998765 3478999999999999999999999
Q ss_pred CCccccccCC
Q psy17482 342 ESVSYLFSNV 351 (353)
Q Consensus 342 ~s~~~l~~~~ 351 (353)
+|+++||+..
T Consensus 294 ~s~~~l~~~~ 303 (304)
T PRK03092 294 GSVTSLFDGL 303 (304)
T ss_pred CCHHHHhCCC
Confidence 9999999754
No 7
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=2.4e-80 Score=601.58 Aligned_cols=302 Identities=40% Similarity=0.613 Sum_probs=282.9
Q ss_pred ccCHHHHHHHHHHhCCCccCCCccccCCCCceeEEeCCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCeEEEE
Q psy17482 20 KASHFFAKQNAEYKGVQRYIPPRLSPEDRGQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAV 99 (353)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~dGE~~v~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~i~~v 99 (353)
.+++.||++||+.||++ +.++.+.+|||||+++++.++|||+|||||||++.|+||++||||+|++|||++||++|++|
T Consensus 16 ~~~~~la~~ia~~lg~~-l~~~~~~~FpdGE~~v~i~~~v~g~dV~ii~s~~~~~nd~l~eLll~~~alr~~~a~~i~lV 94 (323)
T PRK02458 16 NSNLEIAEKIAQAAGVP-LGKLSSRQFSDGEIMINIEESVRGDDIYIIQSTSFPVNDHLWELLIMIDACKRASANTVNVV 94 (323)
T ss_pred CCCHHHHHHHHHHhCCc-eeeeEEEECCCCCEEEEecCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHcCCceEEEE
Confidence 47899999999999999 78999999999999999999999999999999988999999999999999999999999999
Q ss_pred eeCCCccccccccCCCCCCCCchhHHHHhhhccccccCCCCcchHHHHHHHHHHcCCCEEEEEcCChhHHhcccCccccc
Q psy17482 100 IPCFPYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDN 179 (353)
Q Consensus 100 iPY~~YsRqDr~~~~~~~~~~~~~~~~~~~~~~~~kf~~~e~isak~vA~lL~~~g~d~VitvDlHs~~~~~~F~ip~~~ 179 (353)
+||||||||||++. +|||+++|.+|+||+.+|+|+|+++|+|++++++||++|++|
T Consensus 95 iPYl~YaRQDr~~~------------------------~ge~isak~~a~lL~~~g~d~vitvD~H~~~i~~~F~~p~~n 150 (323)
T PRK02458 95 LPYFGYARQDRIAK------------------------PREPITAKLVANMLVKAGVDRVLTLDLHAVQVQGFFDIPVDN 150 (323)
T ss_pred EeccccchhhcccC------------------------CCCCchHHHHHHHHhhcCCCeEEEEecCcHHhhccccCCceE
Confidence 99999999999999 899999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeecCCCceEEEEeecCCCCCEEEEEecccC
Q psy17482 180 LYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMAD 259 (353)
Q Consensus 180 l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~v~~~~~~gdv~Gk~VlIVDDII~ 259 (353)
+.+.+.+++|+.+...+.++++||+||.||++||+.+|+.+++|+.++++.|.... .....+.|+++||+|+|||||+|
T Consensus 151 l~~~p~~~~~l~~~~~~~~~~vvV~pd~Ga~~~A~~la~~L~~~~~~~~~~r~~~~-~~~~~i~gdV~gk~viIVDDIid 229 (323)
T PRK02458 151 LFTVPLFAKHYCKKGLSGSDVVVVSPKNSGIKRARSLAEYLDAPIAIIDYAQDDSE-REEGYIIGDVAGKKAILIDDILN 229 (323)
T ss_pred EEEHHHHHHHHHHhCCCCCceEEEEECCChHHHHHHHHHHhCCCEEEEEEecCCCc-ceeeccccccCCCEEEEEcceeC
Confidence 99999999999775334478999999999999999999999999998887765432 22335678999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcCCCEEEEecCCCCCCCCCCCCCeeEEehHHHHHHHHHHHh
Q psy17482 260 TCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRRTH 339 (353)
Q Consensus 260 TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~id~ii~TnTi~~~~~~~~~~ki~~lsva~lla~~i~~~~ 339 (353)
||+||.++++.|+++||++|+++||||+|+++|.++|.++++++|++|||||++. +.++|++++||+++||++|+++|
T Consensus 230 TG~Tl~~aa~~Lk~~GA~~V~~~~tHgif~~~a~~~l~~s~i~~iv~TdTi~~~~--~~~~k~~~isva~lla~~i~~~~ 307 (323)
T PRK02458 230 TGKTFAEAAKIVEREGATEIYAVASHGLFAGGAAEVLENAPIKEILVTDSVATKE--RVPKNVTYLSASELIADAIIRIH 307 (323)
T ss_pred cHHHHHHHHHHHHhCCCCcEEEEEEChhcCchHHHHHhhCCCCEEEEECCcCCch--hcCCCcEEEEhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999853 34679999999999999999999
Q ss_pred CCCCcccccc
Q psy17482 340 NGESVSYLFS 349 (353)
Q Consensus 340 ~~~s~~~l~~ 349 (353)
+++|++.||+
T Consensus 308 ~~~s~~~~~~ 317 (323)
T PRK02458 308 ERKPLSPLFA 317 (323)
T ss_pred cCCCHHHHhC
Confidence 9999999996
No 8
>KOG1448|consensus
Probab=100.00 E-value=5.4e-81 Score=583.03 Aligned_cols=305 Identities=72% Similarity=1.053 Sum_probs=293.9
Q ss_pred ccCHHHHHHHHHHhCCCccCCCccccCCCCceeEEeCCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCeEEEE
Q psy17482 20 KASHFFAKQNAEYKGVQRYIPPRLSPEDRGQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAV 99 (353)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~dGE~~v~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~i~~v 99 (353)
.++|.||++||++||++ ++.+.+.+|+|||++|++.++|||+||||+||+++++||++||||+|++|||+++|++||+|
T Consensus 10 ~shp~La~~I~~~lgi~-l~~v~~kkf~nge~~v~i~esvR~~dV~iiqsgsg~ind~lmELLI~I~ac~~asa~~vTaV 88 (316)
T KOG1448|consen 10 DSHPELAERIAARLGIE-LGKVNLKKFSNGETSVQIGESVRGEDVYIIQSGSGPINDNLMELLIMINACKRASASRVTAV 88 (316)
T ss_pred CCCHHHHHHHHHHhCCC-cceeeeEEccCCcEEEecccccccCcEEEeccCCCcchHHHHHHHHHHHhcchhhhheeEEe
Confidence 47999999999999999 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCccccccccCCCCCCCCchhHHHHhhhccccccCCCCcchHHHHHHHHHHcCCCEEEEEcCChhHHhcccCccccc
Q psy17482 100 IPCFPYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDN 179 (353)
Q Consensus 100 iPY~~YsRqDr~~~~~~~~~~~~~~~~~~~~~~~~kf~~~e~isak~vA~lL~~~g~d~VitvDlHs~~~~~~F~ip~~~ 179 (353)
+|||||+||||+.+ .+.+++||++|+||..+|+|+||++|+|..|.++||++|++|
T Consensus 89 iP~Fpyarq~~k~~------------------------~r~~i~aklVanlls~aG~dhvItmDlHa~Q~qgfF~ipVdn 144 (316)
T KOG1448|consen 89 IPYFPYARQDKKDK------------------------SRAPILAKLVANLLSSAGADHVITMDLHASQIQGFFDIPVDN 144 (316)
T ss_pred ccCCccccchhhhh------------------------hhhhHHHHHHHhhhhccCCceEEEecccchhhCceeeccchh
Confidence 99999999999998 789999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeecCCCceE-EEEeecCCCCCEEEEEeccc
Q psy17482 180 LYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVA-SMVLVGDVKDRVAILVDDMA 258 (353)
Q Consensus 180 l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~v~-~~~~~gdv~Gk~VlIVDDII 258 (353)
+++.|.+.+|++++.+++++.++|+||.||.+|++.+|+.|+..++.++|+|++.+++. .+.+.||++||.+||||||+
T Consensus 145 ly~~p~~l~~ir~~~~~~~~~vivSPdaGgaKR~~s~ad~l~~~fali~ker~k~~~v~~~m~LVGDv~gkvailVDDm~ 224 (316)
T KOG1448|consen 145 LYAEPAVLNYIRENIPDSENAVIVSPDAGGAKRVTSLADRLNLDFALIHKERRKANEVDIRMVLVGDVKGKVAILVDDMA 224 (316)
T ss_pred hccchHHHHHHHhhCCCccceEEECCCcchhhhhHHHHHhhcchhhhhhhhhhcccccceEEEEEeccCCcEEEEecccc
Confidence 99999999999998888999999999999999999999999999999999998877887 77899999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcCCCEEEEecCCCCCCCCCCCCCeeEEehHHHHHHHHHHH
Q psy17482 259 DTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRRT 338 (353)
Q Consensus 259 ~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~id~ii~TnTi~~~~~~~~~~ki~~lsva~lla~~i~~~ 338 (353)
+|+||+..|++.|.+.||++||+++|||+|++++++++.++.++++++|||+|..++... ||+.+||+++.+||+|+|.
T Consensus 225 dt~GTl~~aa~~L~~~GA~kV~a~~THgVfs~~a~er~~~s~~~~~vvtnt~p~~~~~~~-~~~~~Idvs~~~ae~irr~ 303 (316)
T KOG1448|consen 225 DTCGTLIKAADKLLEHGAKKVYAIVTHGVFSGPAIERLNESALDRVVVTNTIPIDDSCLE-PKLTTIDVSPVLAEAIRRT 303 (316)
T ss_pred cccchHHHHHHHHHhcCCceEEEEEcceeccccHHHHhhhcccceEEEEEeecccccccC-CcccEEeeccccchheEEe
Confidence 999999999999999999999999999999999999999999999999999999766333 8999999999999999999
Q ss_pred hCCCCccccccC
Q psy17482 339 HNGESVSYLFSN 350 (353)
Q Consensus 339 ~~~~s~~~l~~~ 350 (353)
|+|+|+|.||.+
T Consensus 304 h~gesvS~lf~~ 315 (316)
T KOG1448|consen 304 HNGESVSYLFSH 315 (316)
T ss_pred cCCeeeeeeccC
Confidence 999999999975
No 9
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=5.7e-79 Score=592.94 Aligned_cols=302 Identities=45% Similarity=0.744 Sum_probs=285.2
Q ss_pred ccCHHHHHHHHHHhCCCccCCCccccCCCCceeEEeCCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCeEEEE
Q psy17482 20 KASHFFAKQNAEYKGVQRYIPPRLSPEDRGQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAV 99 (353)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~dGE~~v~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~i~~v 99 (353)
++++.||++||+.||++ ++++.+.+|||||++|+++++|||+|||||||++.|+||++||||+|++|||++||++||+|
T Consensus 28 ~~~~~la~~ia~~lg~~-l~~~~~~~FpDGE~~v~i~~~vrg~~V~ivqs~~~p~nd~l~eLll~~~alr~~ga~ri~~V 106 (330)
T PRK02812 28 SSNPALAQEVARYLGMD-LGPMIRKRFADGELYVQIQESIRGCDVYLIQPTCAPVNDHLMELLIMVDACRRASARQITAV 106 (330)
T ss_pred CCCHHHHHHHHHHhCCC-ceeeEEEECCCCCEEEEeCCCCCCCEEEEECCCCCCccHHHHHHHHHHHHHHHhCCceEEEE
Confidence 47899999999999999 78999999999999999999999999999999998999999999999999999999999999
Q ss_pred eeCCCccccccccCCCCCCCCchhHHHHhhhccccccCCCCcchHHHHHHHHHHcCCCEEEEEcCChhHHhcccCccccc
Q psy17482 100 IPCFPYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDN 179 (353)
Q Consensus 100 iPY~~YsRqDr~~~~~~~~~~~~~~~~~~~~~~~~kf~~~e~isak~vA~lL~~~g~d~VitvDlHs~~~~~~F~ip~~~ 179 (353)
+||||||||||+++ +|||+++|++|+||+.+|+|+|+++|+|++++++||++|++|
T Consensus 107 iPYl~YaRQDr~~~------------------------~~e~isak~vA~lL~~~g~d~vitvDlH~~~~~~fF~ipv~n 162 (330)
T PRK02812 107 IPYYGYARADRKTA------------------------GRESITAKLVANLITKAGADRVLAMDLHSAQIQGYFDIPCDH 162 (330)
T ss_pred EecccccccccccC------------------------CCCCchHHHHHHHHHhcCCCEEEEEECCchHHcCccCCCcee
Confidence 99999999999999 899999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcC-CcEEEEEEeecCCCceEEEEeecCCCCCEEEEEeccc
Q psy17482 180 LYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLN-VEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMA 258 (353)
Q Consensus 180 l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg-~~~~~l~K~R~~~~~v~~~~~~gdv~Gk~VlIVDDII 258 (353)
+++.+.+++||.+. +.+++++|+||.||.+||+.+|+.++ .++.+++|+|...+....+.+.++++||+|+|||||+
T Consensus 163 l~~~~~l~~~i~~~--~~~~~vvVsPD~gg~~ra~~~A~~L~~~~~~~~~k~R~~~~~~~~~~~~~~v~g~~viiVDDii 240 (330)
T PRK02812 163 VYGSPVLLDYLASK--NLEDIVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQAHNVAEVLNVIGDVKGKTAILVDDMI 240 (330)
T ss_pred eeChHHHHHHHHhc--CCCCeEEEEECCccHHHHHHHHHHhCCCCEEEEEeeccCCceeeeEeccccCCCCEEEEEcccc
Confidence 99999999999764 24789999999999999999999995 8999999998765554455667899999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcCCCEEEEecCCCCCCCCCCCCCeeEEehHHHHHHHHHHH
Q psy17482 259 DTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRRT 338 (353)
Q Consensus 259 ~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~id~ii~TnTi~~~~~~~~~~ki~~lsva~lla~~i~~~ 338 (353)
+||+|+.++++.|+++||++|++++|||+|++++.++|.++++++|++|||+|++. ...+++++.+||+++|||+|+++
T Consensus 241 ~TG~T~~~a~~~L~~~Ga~~v~~~~tH~v~s~~a~~~l~~~~id~iv~tnti~~~~-~~~~~~~~~~~va~lla~~i~~~ 319 (330)
T PRK02812 241 DTGGTICEGARLLRKEGAKQVYACATHAVFSPPAIERLSSGLFEEVIVTNTIPVPE-ERRFPQLKVLSVANMLGEAIWRI 319 (330)
T ss_pred CcHHHHHHHHHHHhccCCCeEEEEEEcccCChHHHHHHhhCCCCEEEEeCCCCChh-hcccCCceEEEHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988999999999999864 35678999999999999999999
Q ss_pred hCCCCcccccc
Q psy17482 339 HNGESVSYLFS 349 (353)
Q Consensus 339 ~~~~s~~~l~~ 349 (353)
|+++|+++||+
T Consensus 320 ~~~~s~~~l~~ 330 (330)
T PRK02812 320 HEESSVSSMFR 330 (330)
T ss_pred HcCCCHHHhcC
Confidence 99999999985
No 10
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=6.8e-78 Score=581.97 Aligned_cols=303 Identities=53% Similarity=0.814 Sum_probs=287.2
Q ss_pred ccCHHHHHHHHHHhCCCccCCCccccCCCCceeEEeCCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCeEEEE
Q psy17482 20 KASHFFAKQNAEYKGVQRYIPPRLSPEDRGQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAV 99 (353)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~dGE~~v~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~i~~v 99 (353)
.+++.||++||+.||++ +.++.+.+|||||++++++++|+|+||||+||++.|+||++||||+|++|+|++||++||+|
T Consensus 7 ~~~~~la~~ia~~lg~~-~~~~~~~~FpdGE~~vri~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~alr~~ga~~i~lV 85 (309)
T PRK01259 7 NANPELAEKIAKYLGIP-LGKASVGRFSDGEISVEINENVRGKDVFIIQSTCAPTNDNLMELLIMIDALKRASAGRITAV 85 (309)
T ss_pred CCCHHHHHHHHHHhCCc-eeeeEEEECCCCCEEEEeCCCCCCCEEEEECCCCCCCcHHHHHHHHHHHHHHHcCCceEEEE
Confidence 46789999999999999 78999999999999999999999999999999988899999999999999999999999999
Q ss_pred eeCCCccccccccCCCCCCCCchhHHHHhhhccccccCCCCcchHHHHHHHHHHcCCCEEEEEcCChhHHhcccCccccc
Q psy17482 100 IPCFPYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDN 179 (353)
Q Consensus 100 iPY~~YsRqDr~~~~~~~~~~~~~~~~~~~~~~~~kf~~~e~isak~vA~lL~~~g~d~VitvDlHs~~~~~~F~ip~~~ 179 (353)
+||||||||||++. +|||+++|.+|+||+.+|+|+|+++|+|++++++||++|++|
T Consensus 86 iPYl~YsRQDr~~~------------------------~ge~isak~~a~lL~~~g~d~vitvD~H~~~~~~~f~~p~~~ 141 (309)
T PRK01259 86 IPYFGYARQDRKAR------------------------SRVPITAKLVANLLETAGADRVLTMDLHADQIQGFFDIPVDN 141 (309)
T ss_pred eeccccchhhhhhc------------------------cCCCchHHHHHHHHhhcCCCEEEEEcCChHHHcCcCCCCcee
Confidence 99999999999998 899999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeecCCCceEEEEeecCCCCCEEEEEecccC
Q psy17482 180 LYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMAD 259 (353)
Q Consensus 180 l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~v~~~~~~gdv~Gk~VlIVDDII~ 259 (353)
+.+.+.+++|++++ ++++++||+||.||.+||+.+|+.||+|+.+++|.|...+....+.+.++++||+|+|||||++
T Consensus 142 l~~~~~l~~~i~~~--~~~~~vvv~pd~Gg~~~A~~la~~Lg~~~~~~~k~r~~~~~~~~~~~~~~~~g~~vliVDDii~ 219 (309)
T PRK01259 142 LYGSPILLEDIKQK--NLENLVVVSPDVGGVVRARALAKRLDADLAIIDKRRPRANVSEVMNIIGDVEGRDCILVDDMID 219 (309)
T ss_pred eeecHHHHHHHHhc--CCCCcEEEEECCCcHHHHHHHHHHhCCCEEEEEeecccceeEEEEeecccCCCCEEEEEecccC
Confidence 99999999999765 3578999999999999999999999999999999987766555556678999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcCCCEEEEecCCCCCCCCCCCCCeeEEehHHHHHHHHHHHh
Q psy17482 260 TCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRRTH 339 (353)
Q Consensus 260 TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~id~ii~TnTi~~~~~~~~~~ki~~lsva~lla~~i~~~~ 339 (353)
||+|+.++++.|+++|+++|++++|||+|++++.++|.++++++|++|||+|++.+.+.++|++++||+++||++|+++|
T Consensus 220 TG~T~~~a~~~l~~~Ga~~v~~~~tH~i~~~~a~~~l~~~~~~~iv~t~ti~~~~~~~~~~k~~~isva~~ia~~i~~~~ 299 (309)
T PRK01259 220 TAGTLCKAAEALKERGAKSVYAYATHPVLSGGAIERIENSVIDELVVTDSIPLSEEAKKCDKIRVLSVAPLLAEAIRRIS 299 (309)
T ss_pred cHHHHHHHHHHHHccCCCEEEEEEEeeeCChHHHHHHhcCCCCEEEEecCcccchhhccCCCeEEEEcHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999889999999999999766556889999999999999999999
Q ss_pred CCCCcccccc
Q psy17482 340 NGESVSYLFS 349 (353)
Q Consensus 340 ~~~s~~~l~~ 349 (353)
+++|+++||+
T Consensus 300 ~~~s~~~l~~ 309 (309)
T PRK01259 300 NEESVSSLFD 309 (309)
T ss_pred cCCChHHhcC
Confidence 9999999984
No 11
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=100.00 E-value=1.7e-77 Score=577.24 Aligned_cols=301 Identities=43% Similarity=0.702 Sum_probs=282.7
Q ss_pred HHHHHHHHHHhCCCccCCCccccCCCCceeEEeCCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCeEEEEeeC
Q psy17482 23 HFFAKQNAEYKGVQRYIPPRLSPEDRGQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPC 102 (353)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~f~dGE~~v~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~i~~viPY 102 (353)
+.||++||+.||++ +.++++.+|||||+++++.++|||+||||+||+++|+||++||||++++|||++||++||+|+||
T Consensus 1 ~~lA~~ia~~lg~~-l~~~~~~~FpdGE~~v~i~~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~~~a~~i~~ViPY 79 (302)
T PLN02369 1 PALSQEIACYLGLE-LGKITIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKRITAVIPY 79 (302)
T ss_pred ChHHHHHHHHhCCc-eeeeEEEECCCCCEEEEECCCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHHcCCCeEEEEeec
Confidence 46999999999999 78999999999999999999999999999999998999999999999999999999999999999
Q ss_pred CCccccccccCCCCCCCCchhHHHHhhhccccccCCCCcchHHHHHHHHHHcCCCEEEEEcCChhHHhcccCcccccccc
Q psy17482 103 FPYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYA 182 (353)
Q Consensus 103 ~~YsRqDr~~~~~~~~~~~~~~~~~~~~~~~~kf~~~e~isak~vA~lL~~~g~d~VitvDlHs~~~~~~F~ip~~~l~a 182 (353)
||||||||++. +|||+++|.+|+||+.+|+|+|+++|+|++++++||++|++|+++
T Consensus 80 l~YsRQDr~~~------------------------~~e~isak~va~lL~~~g~d~vi~vDlHs~~i~~~F~ip~~~l~~ 135 (302)
T PLN02369 80 FGYARADRKTQ------------------------GRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYG 135 (302)
T ss_pred ccccccccccC------------------------CCCCchHHHHHHHHHhcCCCEEEEEECCchHHhhccCCceecccc
Confidence 99999999998 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHc-CCcEEEEEEeecCCCceEEEEeecCCCCCEEEEEecccCCh
Q psy17482 183 EPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRL-NVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMADTC 261 (353)
Q Consensus 183 ~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~L-g~~~~~l~K~R~~~~~v~~~~~~gdv~Gk~VlIVDDII~TG 261 (353)
.+.+++||.+...+.+++++|+||.||++||+.+++.+ +.++.++.|+|...+....+.+.++++||+|+|||||++||
T Consensus 136 ~~~~~~~i~~~~~~~~~~vvVspd~gg~~~a~~~a~~l~~~~~~~l~k~R~~~~~~~~~~~~~~v~g~~viivDDii~TG 215 (302)
T PLN02369 136 QPVILDYLASKTISSPDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAIMVDDMIDTA 215 (302)
T ss_pred hHHHHHHHHHhCCCCCceEEEEECcChHHHHHHHHHHcCCCCEEEEEEecCCcceeeeEecCCCCCCCEEEEEcCcccch
Confidence 99999999765323367899999999999999999999 79999999999765554445567899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcCCCEEEEecCCCCCCCCCCCCCeeEEehHHHHHHHHHHHhCC
Q psy17482 262 GTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRRTHNG 341 (353)
Q Consensus 262 ~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~id~ii~TnTi~~~~~~~~~~ki~~lsva~lla~~i~~~~~~ 341 (353)
+|+.++++.|++.||++|++++|||+|++++.++|.++++++|++|||+|++.. ..++|++++||+++||++|+++|++
T Consensus 216 ~Tl~~a~~~l~~~Ga~~v~~~~tH~v~~~~a~~~l~~~~~~~iv~t~ti~~~~~-~~~~~~~~~~v~~~la~~i~~~~~~ 294 (302)
T PLN02369 216 GTITKGAALLHQEGAREVYACATHAVFSPPAIERLSSGLFQEVIVTNTIPVSEK-NYFPQLTVLSVANLLGETIWRVHDD 294 (302)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEEeeeeCHHHHHHHHhCCCCEEEEeCCCCChhh-cccCCceEEEHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999889999999999998653 4578999999999999999999999
Q ss_pred CCcccccc
Q psy17482 342 ESVSYLFS 349 (353)
Q Consensus 342 ~s~~~l~~ 349 (353)
+|+++||.
T Consensus 295 ~s~~~~~~ 302 (302)
T PLN02369 295 CSVSSIFD 302 (302)
T ss_pred CChHHhcC
Confidence 99999984
No 12
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=1.6e-77 Score=590.88 Aligned_cols=304 Identities=27% Similarity=0.426 Sum_probs=276.3
Q ss_pred ccCHHHHHHHHHHh--------------------CCC-ccCCCccccCCCCceeEEeCCccCCceEEEEecCCC------
Q psy17482 20 KASHFFAKQNAEYK--------------------GVQ-RYIPPRLSPEDRGQIGVEIGESVRGEDVYIVQSGSG------ 72 (353)
Q Consensus 20 ~~~~~~~~~~~~~~--------------------~~~-~~~~~~~~~f~dGE~~v~i~~~vrg~dv~iiqs~~~------ 72 (353)
.+++.||+++|+.| |++ .+.++++.+|||||++|+++++|||+|||||||+++
T Consensus 15 ~~~~~la~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~FpDGE~~vri~~~Vrg~dV~ivqs~~~~~v~~~ 94 (382)
T PRK06827 15 PSCRELADKVDEHLVRIRERKENENIESLAFKGYSRESYLIPAKFIRFSNGEAKGEILESVRGKDIYILQDVGNYSVTYN 94 (382)
T ss_pred CCCHHHHHHHHHHHHHhhhhccccccccccccccCCcceeeeeEEEECCCCCEEEEECCCCCCCeEEEEecCCccccccc
Confidence 47889999999999 532 278899999999999999999999999999999874
Q ss_pred --------CCchHHHHHHHHHHHHhhhCCCeEEEEeeCCCccccccccCCCCCCCCchhHHHHhhhccccccCCCCcchH
Q psy17482 73 --------EVNDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISA 144 (353)
Q Consensus 73 --------~~nd~lmeLll~~~a~r~~~a~~i~~viPY~~YsRqDr~~~~~~~~~~~~~~~~~~~~~~~~kf~~~e~isa 144 (353)
|+||++||||+|++||| +||++||+|+||||||||||+ . +|||+|+
T Consensus 95 ~~~~~~~~p~nd~lmeLll~idalr-agA~rIt~ViPY~~YaRQDr~-~------------------------~~e~ita 148 (382)
T PRK06827 95 MFGEKNHMSPDDHFQDLKRTIDAIR-GKARRITVIMPFLYESRQHKR-K------------------------GRESLDC 148 (382)
T ss_pred ccccccCCCCcHHHHHHHHHHHHHh-cCCCeEEEEeecccccccccc-c------------------------CCCCccH
Confidence 88999999999999999 999999999999999999999 7 6999999
Q ss_pred HHHHHHHHHcCCCEEEEEcCChhHHhcccC-ccccccccHHHHHHHHHhhCC----CCCCeEEEecCCCchhhHHHHHHH
Q psy17482 145 KLVANMLSVAGADHIITMDLHASQIQGFFD-IPVDNLYAEPAVLKWIKENIP----EWKNSIIVSPDAGGAKRVTSIADR 219 (353)
Q Consensus 145 k~vA~lL~~~g~d~VitvDlHs~~~~~~F~-ip~~~l~a~~~La~~i~~~~~----~~~~~vvVspd~Gg~~ra~~la~~ 219 (353)
|++|+||+.+|+|+|+++|+|++++++||+ .|++|+.+.+.+++|+.+... +.++++||+||.||++||+.+|+.
T Consensus 149 k~vA~lL~~~G~d~vitvDlHs~~i~~~F~~~pvdnl~a~~~l~~~i~~~i~~l~~d~~~~VVVsPD~Gg~~rA~~~A~~ 228 (382)
T PRK06827 149 ALALQELEELGVDNIITFDAHDPRIENAIPLMGFENLYPSYQIIKALLKNEKDLEIDKDHLMVISPDTGAMDRAKYYASV 228 (382)
T ss_pred HHHHHHHHHcCCCeEEEecCChHHhcccCCCCCcCCcCchHHHHHHHHHhcccccccCCCcEEEEECccchHHHHHHHHH
Confidence 999999999999999999999999999998 589999999999999975421 236899999999999999999999
Q ss_pred cCCcEEEEEEeecCCCce------EEEEeec-CCCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhH
Q psy17482 220 LNVEFALIHKERKKANEV------ASMVLVG-DVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPA 292 (353)
Q Consensus 220 Lg~~~~~l~K~R~~~~~v------~~~~~~g-dv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a 292 (353)
||.|+.+++|+|...+.. ......| +++||+|||||||+|||+||.++++.|+++||++|+++||||+|+ +|
T Consensus 229 Lg~~~ai~~K~R~~~~~~~g~~~~~~~~~~g~dV~gr~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~vf~-~a 307 (382)
T PRK06827 229 LGVDLGLFYKRRDYSRVVNGRNPIVAHEFLGRDVEGKDVLIVDDMIASGGSMIDAAKELKSRGAKKIIVAATFGFFT-NG 307 (382)
T ss_pred hCCCEEEEEcccCCcccccCCCceEEEecCCcccCCCEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEEEEeecCh-HH
Confidence 999999999998653222 2234567 899999999999999999999999999999999999999999999 99
Q ss_pred HHHHhhc----CCCEEEEecCCCCCCCCCCCCCeeEEehHHHHHHHHHHHhCCCCccccccC
Q psy17482 293 INRINNA----CFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRRTHNGESVSYLFSN 350 (353)
Q Consensus 293 ~~~l~~s----~id~ii~TnTi~~~~~~~~~~ki~~lsva~lla~~i~~~~~~~s~~~l~~~ 350 (353)
+++|.++ ++++|++|||+|++++...++|++++|||++||++|+++|+++|+|+||++
T Consensus 308 ~~~l~~~~~~g~i~~iv~TdTi~~~~~~~~~~~~~~isva~llA~~I~~~~~~~s~s~l~~~ 369 (382)
T PRK06827 308 LEKFDKAYEEGYFDRIIGTNLVYHPEELLSKPWYIEVDMSKLIARIIDALNHDVSLSKLLDP 369 (382)
T ss_pred HHHHHhhcccCCCCEEEEeCCCcCchhhcccCCeEEEEcHHHHHHHHHHHHcCCCHHHHhCc
Confidence 9999753 599999999999976544578999999999999999999999999999975
No 13
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=1.2e-76 Score=571.28 Aligned_cols=284 Identities=28% Similarity=0.411 Sum_probs=265.0
Q ss_pred ccCHHHHHHHHHHhCCCccCCCccccCCCCceeEEeCCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCeEEEE
Q psy17482 20 KASHFFAKQNAEYKGVQRYIPPRLSPEDRGQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAV 99 (353)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~dGE~~v~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~i~~v 99 (353)
++|+.||++||+.||++ +.++++.+|||||++|++.++|||+||||+||+++| ||++||||+|++|||++||++||+|
T Consensus 9 ~~~~~la~~ia~~lg~~-~~~~~~~~F~dGE~~v~i~~~v~g~~V~ivqs~~~~-n~~l~elll~~~alr~~~a~~i~~V 86 (301)
T PRK07199 9 PGNEAAAGRLAAALGVE-VGRIELHRFPDGESYVRLDSPVAGRTVVLVCSLDRP-DEKLLPLLFAAEAARELGARRVGLV 86 (301)
T ss_pred CCCHHHHHHHHHHhCCc-eeeeEEEECCCCCEEEEECCCCCCCEEEEECCCCCC-cHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 47899999999999999 789999999999999999999999999999999877 9999999999999999999999999
Q ss_pred eeCCCccccccccCCCCCCCCchhHHHHhhhccccccCCCCcchHHHHHHHHHHcCCCEEEEEcCCh---hHHhcccCcc
Q psy17482 100 IPCFPYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHA---SQIQGFFDIP 176 (353)
Q Consensus 100 iPY~~YsRqDr~~~~~~~~~~~~~~~~~~~~~~~~kf~~~e~isak~vA~lL~~~g~d~VitvDlHs---~~~~~~F~ip 176 (353)
+||||||||||++. +|||+|+|.+|+||++ |+|+|+++|+|+ .++++||++|
T Consensus 87 iPY~~YaRqDr~~~------------------------~ge~isak~vA~ll~~-~~d~vit~DlH~~~~~~~~~~f~ip 141 (301)
T PRK07199 87 APYLAYMRQDIAFH------------------------PGEAISQRHFARLLSG-SFDRLVTVDPHLHRYPSLSEVYPIP 141 (301)
T ss_pred eecccccccccccC------------------------CCCCccHHHHHHHHHh-hcCeEEEEeccchhhHHhcCcccCC
Confidence 99999999999999 8999999999999985 899999999997 6789999999
Q ss_pred ccccccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeecCCCceEEEEe-ecCCCCCEEEEEe
Q psy17482 177 VDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVL-VGDVKDRVAILVD 255 (353)
Q Consensus 177 ~~~l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~v~~~~~-~gdv~Gk~VlIVD 255 (353)
++|+++.+.+++||.+. .+++++|+||.||.+|++.+|+.+|+++.+++|.|...++.+.... .++++||+|+|||
T Consensus 142 ~~nl~~~~~la~~l~~~---~~~~vVVsPd~g~~~~a~~la~~l~~~~~~~~K~R~~~~~~~~~~~~~~~v~Gr~vIIVD 218 (301)
T PRK07199 142 AVVLSAAPAIAAWIRAH---VPRPLLIGPDEESEQWVAAVAERAGAPHAVLRKTRHGDRDVEISLPDAAPWAGRTPVLVD 218 (301)
T ss_pred ccccchHHHHHHHHHhc---CCCcEEEEeCCChHHHHHHHHHHhCCCEEEEEEEecCCCeEEEEeccCcccCCCEEEEEe
Confidence 99999999999999764 3578999999999999999999999999999999976655544333 4578999999999
Q ss_pred cccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcCCCEEEEecCCCCCCCCCCCCCeeEEehHHHHHHHH
Q psy17482 256 DMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAV 335 (353)
Q Consensus 256 DII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~id~ii~TnTi~~~~~~~~~~ki~~lsva~lla~~i 335 (353)
||+|||+|+.++++.||++||++|+++||||+|+++|.++|.++++++|++|||+|++. .++||+++||++|
T Consensus 219 DIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHgvfs~~a~~~l~~~~i~~iv~Tdti~~~~--------~~~sva~lla~~i 290 (301)
T PRK07199 219 DIVSTGRTLIEAARQLRAAGAASPDCVVVHALFAGDAYSALAAAGIARVVSTDTVPHPS--------NAISLAPLLAEAL 290 (301)
T ss_pred cccCcHHHHHHHHHHHHHCCCcEEEEEEEeeeCChHHHHHHHhCCCCEEEEeCCccCCC--------CEEehHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999863 2799999999999
Q ss_pred HHHhCC
Q psy17482 336 RRTHNG 341 (353)
Q Consensus 336 ~~~~~~ 341 (353)
+++|++
T Consensus 291 ~~~~~~ 296 (301)
T PRK07199 291 RREFDD 296 (301)
T ss_pred HHHhcC
Confidence 998874
No 14
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=100.00 E-value=5e-74 Score=555.31 Aligned_cols=300 Identities=55% Similarity=0.795 Sum_probs=283.5
Q ss_pred ccCHHHHHHHHHHhCCCccCCCccccCCCCceeEEeCCccCCceEEEE-ecCCCCCchHHHHHHHHHHHHhhhCCCeEEE
Q psy17482 20 KASHFFAKQNAEYKGVQRYIPPRLSPEDRGQIGVEIGESVRGEDVYIV-QSGSGEVNDNLMELLIMINACKIASASRVTA 98 (353)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~dGE~~v~i~~~vrg~dv~ii-qs~~~~~nd~lmeLll~~~a~r~~~a~~i~~ 98 (353)
..++.||++||+.||++ +.+.++.+|||||++|++.+++||+||||+ ||+++|+||++|||+++++|||++||++||+
T Consensus 7 ~~~~~la~~ia~~lg~~-~~~~~~~~FpdGE~~v~i~~~v~g~~v~iv~~s~~~~~~~~l~el~~~~~a~r~~ga~~i~~ 85 (308)
T TIGR01251 7 SSNQELAQKVAKNLGLP-LGDVEVKRFPDGELYVRINESVRGKDVFIIQQSTSAPVNDNLMELLIMIDALKRASAKSITA 85 (308)
T ss_pred CCCHHHHHHHHHHhCCe-eeeeEEEECCCCCEEEEECCCCCCCeEEEEeCCCCCCccHHHHHHHHHHHHHHHcCCCeEEE
Confidence 46889999999999999 789999999999999999999999999999 9998889999999999999999999999999
Q ss_pred EeeCCCccccccccCCCCCCCCchhHHHHhhhccccccCCCCcchHHHHHHHHHHcCCCEEEEEcCChhHHhcccCcccc
Q psy17482 99 VIPCFPYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVD 178 (353)
Q Consensus 99 viPY~~YsRqDr~~~~~~~~~~~~~~~~~~~~~~~~kf~~~e~isak~vA~lL~~~g~d~VitvDlHs~~~~~~F~ip~~ 178 (353)
|+||||||||||++. +|||+++|.+|+||+++|+|+|+++|+|++++++||++|++
T Consensus 86 v~PYl~Y~RqDr~~~------------------------~ge~is~~~~a~ll~~~g~d~vit~DlHs~~~~~~f~ip~~ 141 (308)
T TIGR01251 86 VIPYYGYARQDKKFK------------------------SREPISAKLVANLLETAGADRVLTVDLHSPQIQGFFDVPVD 141 (308)
T ss_pred EEEecccchhccccC------------------------CCCCchHHHHHHHHHHcCCCEEEEecCChHHhcCcCCCcee
Confidence 999999999999999 89999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeec-CCCceEEEEeecCCCCCEEEEEecc
Q psy17482 179 NLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERK-KANEVASMVLVGDVKDRVAILVDDM 257 (353)
Q Consensus 179 ~l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~-~~~~v~~~~~~gdv~Gk~VlIVDDI 257 (353)
++++.+.+++||.+.. .+++++|+||.||.+||..+|+.+|+|+.+++|.|. .+++.......++++||+|+|||||
T Consensus 142 ~l~a~~~l~~~i~~~~--~~~~viv~pd~g~~~~A~~lA~~Lg~~~~~i~k~r~~~~~~~~~~~~~~~v~g~~vliVDDi 219 (308)
T TIGR01251 142 NLYASPVLAEYLKKKI--LDNPVVVSPDAGGVERAKKVADALGCPLAIIDKRRISATNEVEVMNLVGDVEGKDVVIVDDI 219 (308)
T ss_pred cccCHHHHHHHHHhhC--CCCCEEEEECCchHHHHHHHHHHhCCCEEEEEEEecCCCCEEEEEecccccCCCEEEEEccc
Confidence 9999999999998763 368899999999999999999999999999999997 4455555556788999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcCCCEEEEecCCCCCCCCCCCCCeeEEehHHHHHHHHHH
Q psy17482 258 ADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRR 337 (353)
Q Consensus 258 I~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~id~ii~TnTi~~~~~~~~~~ki~~lsva~lla~~i~~ 337 (353)
++||+|+..+++.|+++||++|++++|||+|++++.++|.++++++|++|||+|+. +.++|++.+|++++||++|++
T Consensus 220 i~tG~Tl~~a~~~l~~~ga~~v~~~~th~v~~~~a~~~l~~~~~~~iv~tdt~~~~---~~~~~~~~v~va~~la~~i~~ 296 (308)
T TIGR01251 220 IDTGGTIAKAAEILKSAGAKRVIAAATHGVFSGPAIERIANAGVEEVIVTNTIPHE---KHKPKVSVISVAPLIAEAIRR 296 (308)
T ss_pred cCCHHHHHHHHHHHHhcCCCEEEEEEEeeecCcHHHHHHHhCCCCEEEEeCCCCcc---ccCCCcEEEEhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999985 357899999999999999999
Q ss_pred HhCCCCcccccc
Q psy17482 338 THNGESVSYLFS 349 (353)
Q Consensus 338 ~~~~~s~~~l~~ 349 (353)
+|+++|++++|.
T Consensus 297 ~~~~~s~~~~~~ 308 (308)
T TIGR01251 297 IHNNESVSSLFD 308 (308)
T ss_pred HhcCCChHHhcC
Confidence 999999999884
No 15
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=100.00 E-value=5.2e-73 Score=548.46 Aligned_cols=286 Identities=23% Similarity=0.301 Sum_probs=258.4
Q ss_pred ccCHHHHHHHHHHh-CCCccCCCccccCCCCceeEEe--CCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCeE
Q psy17482 20 KASHFFAKQNAEYK-GVQRYIPPRLSPEDRGQIGVEI--GESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRV 96 (353)
Q Consensus 20 ~~~~~~~~~~~~~~-~~~~~~~~~~~~f~dGE~~v~i--~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~i 96 (353)
++|+.||++||+.+ |++ +++.++.+|||||+++++ +++|||+||||+||+++| |++||||+|++|||++||++|
T Consensus 23 ~~~~~LA~~ia~~l~g~~-l~~~~~~~FpDGE~~v~v~~~~~vrg~~V~ivqs~~~p--d~lmELLl~~dAlr~~ga~~i 99 (326)
T PLN02297 23 EETEELARKIAAESDAIE-LGSINWRKFPDGFPNLFINNAHGIRGQHVAFLASFSSP--AVIFEQLSVIYALPKLFVASF 99 (326)
T ss_pred CCCHHHHHHHHHHhCCCc-eeeeEEEECCCCCEEEEEcCCCCcCCCeEEEECCCCCC--hHHHHHHHHHHHHHHcCCCEE
Confidence 48899999999996 899 789999999999755555 699999999999998765 789999999999999999999
Q ss_pred EEEeeCCCccccccccCCCCCCCCchhHHHHhhhccccccCCCCcchHHHHHHHHHH-----cCCCEEEEEcCChhHHhc
Q psy17482 97 TAVIPCFPYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSV-----AGADHIITMDLHASQIQG 171 (353)
Q Consensus 97 ~~viPY~~YsRqDr~~~~~~~~~~~~~~~~~~~~~~~~kf~~~e~isak~vA~lL~~-----~g~d~VitvDlHs~~~~~ 171 (353)
|+|+||||||||||+++ +|||+++|++|+||+. +|+|+|+++|+|++++++
T Consensus 100 ~~ViPY~~YaRQDr~~~------------------------~ge~isak~vA~ll~~~~~~~~g~d~vitvDlH~~~~~~ 155 (326)
T PLN02297 100 TLVLPFFPTGTSERVER------------------------EGDVATAFTLARILSNIPISRGGPTSLVIFDIHALQERF 155 (326)
T ss_pred EEEeeCChhhcCCCCCC------------------------CCCCchHHHHHHHHhcccccccCCCEEEEEeCCChHHCC
Confidence 99999999999999999 8999999999999999 899999999999999999
Q ss_pred ccCcccccc--ccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeecCCCceEEEEeecCCCCC
Q psy17482 172 FFDIPVDNL--YAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDR 249 (353)
Q Consensus 172 ~F~ip~~~l--~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~v~~~~~~gdv~Gk 249 (353)
||+.|.+++ ++.+.+++|+.+.. +.++++||+||.||.+|++.++ ++.++.+++|+|.... .......++++||
T Consensus 156 fF~~~~~~l~l~a~~~l~~~i~~~~-~~~~~vvVsPD~Ga~~ra~~~a--~~~~~~~~~K~R~g~~-~~~~~~~~dv~gr 231 (326)
T PLN02297 156 YFGDNVLPCFESGIPLLKKRLQQLP-DSDNIVIAFPDDGAWKRFHKQF--EHFPMVVCTKVREGDK-RIVRIKEGNPAGR 231 (326)
T ss_pred ccCCcccchhhccHHHHHHHHHhcc-ccCCcEEEecCccHHHHHHHHc--CCCCEEEEEeEECCCc-eEEEecccccCCC
Confidence 999998865 89999999997531 2468999999999999998887 6889999999996422 2233467899999
Q ss_pred EEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhh------cCCCEEEEecCCCCCCCC-CCCCCe
Q psy17482 250 VAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINN------ACFEAVVVTNTIPQDGHM-KDCTKI 322 (353)
Q Consensus 250 ~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~------s~id~ii~TnTi~~~~~~-~~~~ki 322 (353)
+|+|||||+|||+||.++++.|+++||++|+++||||+|+++|+++|.+ +++++|++|||||++++. ..++|+
T Consensus 232 ~vlIVDDIidTG~Tl~~aa~~L~~~Ga~~V~~~~THglfs~~a~~~l~~~~~~~~~~i~~iv~TdTip~~~~~~~~~~k~ 311 (326)
T PLN02297 232 HVVIVDDLVQSGGTLIECQKVLAAHGAAKVSAYVTHGVFPNESWERFTHDNGGPEAGFAYFWITDSCPQTVKAVRGKAPF 311 (326)
T ss_pred eEEEEecccCcHHHHHHHHHHHHHCCCcEEEEEEECcccChhHHHHHHhcccccccCcCEEEEcCCccCChhhcccCCCc
Confidence 9999999999999999999999999999999999999999999999987 489999999999987552 456899
Q ss_pred eEEehHHHHHHHHH
Q psy17482 323 RCIDVSMMFAEAVR 336 (353)
Q Consensus 323 ~~lsva~lla~~i~ 336 (353)
+++||+++|||+|.
T Consensus 312 ~~isva~llAe~i~ 325 (326)
T PLN02297 312 EVLSLAGSIADALQ 325 (326)
T ss_pred EEEEcHHHHHHHhc
Confidence 99999999999984
No 16
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=7.8e-73 Score=541.50 Aligned_cols=279 Identities=33% Similarity=0.495 Sum_probs=261.0
Q ss_pred ccCHHHHHHHHHHhCCCccCCCccccCCCCceeEEeCCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCeEEEE
Q psy17482 20 KASHFFAKQNAEYKGVQRYIPPRLSPEDRGQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAV 99 (353)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~dGE~~v~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~i~~v 99 (353)
++|+.||++||+.||++ ++++++.+|||||++|++.++|||+||||+|++ +++||++||||+|++|||++||++||+|
T Consensus 6 ~~~~~la~~ia~~l~~~-~~~~~~~~FpdGE~~v~i~~~v~g~~v~i~~~~-~~~~d~l~ell~~~~alr~~ga~~i~~v 83 (285)
T PRK00934 6 SASQLLASEVARLLNTE-LALVETKRFPDGELYVRILGEIDGEDVVIISTT-YPQDENLVELLLLIDALRDEGAKSITLV 83 (285)
T ss_pred CCCHHHHHHHHHHHCCc-eEeeEEEECCCCCEEEEECCCcCCCEEEEEeCC-CCCcHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 47899999999999999 789999999999999999999999999999995 4689999999999999999999999999
Q ss_pred eeCCCccccccccCCCCCCCCchhHHHHhhhccccccCCCCcchHHHHHHHHHHcCCCEEEEEcCChhHHhcccCccccc
Q psy17482 100 IPCFPYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDN 179 (353)
Q Consensus 100 iPY~~YsRqDr~~~~~~~~~~~~~~~~~~~~~~~~kf~~~e~isak~vA~lL~~~g~d~VitvDlHs~~~~~~F~ip~~~ 179 (353)
+||||||||||+++ +|||+++|++|+||+.+| |+|+++|+|++++++||++|++|
T Consensus 84 ~PY~~YaRqDr~~~------------------------~ge~isak~~a~ll~~~~-d~vitvD~H~~~~~~~f~~~~~~ 138 (285)
T PRK00934 84 IPYLGYARQDKRFK------------------------PGEPISARAIAKIISAYY-DRIITINIHEPSILEFFPIPFIN 138 (285)
T ss_pred ecCCcccccccccC------------------------CCCCccHHHHHHHHHHhc-CEEEEEcCChHHHcCcCCCcEeE
Confidence 99999999999999 899999999999999998 99999999999999999999999
Q ss_pred cccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeecCCCceEEEEeecCCCCCEEEEEecccC
Q psy17482 180 LYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMAD 259 (353)
Q Consensus 180 l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~v~~~~~~gdv~Gk~VlIVDDII~ 259 (353)
+++.+.++++|.+. .++++||+||.||.+||..+|+.+++|+.+++|.|...++.......++++||+|+|||||+|
T Consensus 139 l~a~~~la~~i~~~---~~~~vvv~pd~Ga~~~a~~lA~~l~~~~~~i~k~r~~~~~~~~~~~~~~v~Gk~VlIVDDIi~ 215 (285)
T PRK00934 139 LDAAPLIAEYIGDK---LDDPLVLAPDKGALELAKEAAEILGCEYDYLEKTRISPTEVEIAPKNLDVKGKDVLIVDDIIS 215 (285)
T ss_pred eecHHHHHHHHHhc---CCCCEEEEeCCchHHHHHHHHHHhCCCEEEEEEEecCCCeEEEeccccccCCCEEEEEcCccc
Confidence 99999999999543 357899999999999999999999999999999987655544433456899999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcCCCEEEEecCCCCCCCCCCCCCeeEEehHHHHHHHHH
Q psy17482 260 TCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVR 336 (353)
Q Consensus 260 TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~id~ii~TnTi~~~~~~~~~~ki~~lsva~lla~~i~ 336 (353)
||+|+.++++.|+++||++|+++++||+|++++.++|.++++++|++|||+|+ +++++||+++|||+|+
T Consensus 216 TG~Tl~~aa~~Lk~~GA~~V~~~~~H~i~~~~a~~~l~~~~i~~i~~tnti~~--------~~~~~~va~~la~~i~ 284 (285)
T PRK00934 216 TGGTMATAIKILKEQGAKKVYVACVHPVLVGDAILKLYNAGVDEIIVTDTLES--------EVSKISVAPLIADLLK 284 (285)
T ss_pred cHHHHHHHHHHHHHCCCCEEEEEEEeeccCcHHHHHHHhCCCCEEEEcCCCCC--------CceEEEcHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999985 4679999999999985
No 17
>KOG1503|consensus
Probab=100.00 E-value=1.4e-69 Score=492.31 Aligned_cols=308 Identities=45% Similarity=0.732 Sum_probs=288.9
Q ss_pred ccCHHHHHHHHHHhCCCccCCCccccCCCCceeEEeCCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCeEEEE
Q psy17482 20 KASHFFAKQNAEYKGVQRYIPPRLSPEDRGQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAV 99 (353)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~dGE~~v~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~i~~v 99 (353)
+++|.||++++++||++ ++.+.+.+.+|+|+.|+|.++|||+||||||+.+.++|.++||||+|+.|||.+.|++|+.|
T Consensus 15 ns~~elak~vaerlgi~-~g~~~vy~~tnret~vei~~svrgkdvfiiqt~skdvn~~vmellim~yackts~aksiigv 93 (354)
T KOG1503|consen 15 NSHPELAKMVAERLGIE-LGKATVYQKTNRETRVEIKESVRGKDVFIIQTGSKDVNNDVMELLIMAYACKTSCAKSIIGV 93 (354)
T ss_pred CCCHHHHHHHHHHhccc-ccceEEEecCCCceEEEhhhhccCceEEEEEecCcccchHHHHHHHHHHHHhhhhhhceEEE
Confidence 57899999999999999 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCccccccccCCCCCCCCchhHHHHhhhccccccCCCCcchHHHHHHHHHHcCCCEEEEEcCChhHHhcccCccccc
Q psy17482 100 IPCFPYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDN 179 (353)
Q Consensus 100 iPY~~YsRqDr~~~~~~~~~~~~~~~~~~~~~~~~kf~~~e~isak~vA~lL~~~g~d~VitvDlHs~~~~~~F~ip~~~ 179 (353)
|||||||+|.|..+ +..|..|++|.|+.++|..++|++|+|...+||||++|+||
T Consensus 94 ipy~pyskqckmrk-------------------------rgsiv~klla~mmckaglthlitmdlhqkeiqgff~~pvdn 148 (354)
T KOG1503|consen 94 IPYLPYSKQCKMRK-------------------------RGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFSIPVDN 148 (354)
T ss_pred eecCccchhhhhhh-------------------------cccHHHHHHHHHHHhcccceEEeehhhhHhhcceecccccc
Confidence 99999999999876 56799999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeecC-----------CCc------------
Q psy17482 180 LYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKK-----------ANE------------ 236 (353)
Q Consensus 180 l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~-----------~~~------------ 236 (353)
|.++|.|.+||.+..++++|.++|+-..|..++|..+|++|.+.+++++.+... +..
T Consensus 149 lraspfllqyiqe~ipdyrnavivaksp~~akka~syaerlrlglavihge~k~~e~d~~dgr~spp~~~~~t~~~~~~l 228 (354)
T KOG1503|consen 149 LRASPFLLQYIQEEIPDYRNAVIVAKSPGVAKKAQSYAERLRLGLAVIHGEQKDTESDLVDGRHSPPPVVTATTHPSLEL 228 (354)
T ss_pred cccCHHHHHHHHHhCccccceEEEecCcchhhHHHhHHHHHhhceeEeeccccccccccccCCcCCCCccccccCccccC
Confidence 999999999999999999999999999999999999999999988888754321 100
Q ss_pred -------eEEEEeecCCCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcCCCEEEEecC
Q psy17482 237 -------VASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTNT 309 (353)
Q Consensus 237 -------v~~~~~~gdv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~id~ii~TnT 309 (353)
..-..+.|||.||-.|+|||+||.-.++.+|++.||++||-+||+++|||++|.+|..+|++|.+|+|++|||
T Consensus 229 p~~~~k~kppltvvgdvggriaimvddiiddvqsfvaaae~lkergaykiyv~athgllssdapr~lees~idevvvtnt 308 (354)
T KOG1503|consen 229 PAQISKEKPPLTVVGDVGGRIAIMVDDIIDDVQSFVAAAEVLKERGAYKIYVMATHGLLSSDAPRLLEESPIDEVVVTNT 308 (354)
T ss_pred chhhcccCCCeEEEeccCceEEEEehhhHHhHHHHHHHHHHHHhcCceEEEEEeecccccccchhhhhcCCCceEEEecC
Confidence 0023468999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCeeEEehHHHHHHHHHHHhCCCCccccccCCCC
Q psy17482 310 IPQDGHMKDCTKIRCIDVSMMFAEAVRRTHNGESVSYLFSNVPY 353 (353)
Q Consensus 310 i~~~~~~~~~~ki~~lsva~lla~~i~~~~~~~s~~~l~~~~~~ 353 (353)
+|+.-+..+|+|++.+|++-+|+|+|||+|++||+++||.++.+
T Consensus 309 vphevqklqc~kiktvdislii~eairrihn~esm~ylfrnvtl 352 (354)
T KOG1503|consen 309 VPHEVQKLQCHKIKTVDISLIISEAIRRIHNGESMSYLFRNVTL 352 (354)
T ss_pred CcHHHHhhcCCccceeehhhHHHHHHHHHhCCchHHHHHhhCcc
Confidence 99988888999999999999999999999999999999999864
No 18
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=100.00 E-value=9.7e-42 Score=303.86 Aligned_cols=154 Identities=55% Similarity=0.866 Sum_probs=124.9
Q ss_pred CCCCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeecCCC------------------------------ceEEEEeecC
Q psy17482 196 EWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKAN------------------------------EVASMVLVGD 245 (353)
Q Consensus 196 ~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~------------------------------~v~~~~~~gd 245 (353)
+++|.|||+|+.||.+||..+|++|++.+++++++|.... +...+.+.||
T Consensus 1 dy~naVIVa~~~g~akRAts~Ad~L~l~~avih~e~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~e~~~~~vVGD 80 (184)
T PF14572_consen 1 DYRNAVIVAKDPGGAKRATSFADRLRLGFAVIHGERRDSESDGVDGRHSPPMSRSAAVSSSEEIPEMTPKEKPPMNVVGD 80 (184)
T ss_dssp TGGGEEEEESSGGGHHHHHHHHHHCT-EEEEE------------------------------------------EEEES-
T ss_pred CCCCCEEEeCCCCchHhHHHHHHHhCCCeeEecCccccccccccccccCCCccccccccccchhhhcccCcccceEEEEE
Confidence 3578999999999999999999999999999998774210 1113457899
Q ss_pred CCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcCCCEEEEecCCCCCCCCCCCCCeeEE
Q psy17482 246 VKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCI 325 (353)
Q Consensus 246 v~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~id~ii~TnTi~~~~~~~~~~ki~~l 325 (353)
|+||+||||||||+||+|+.+|++.||++||++||+++|||+|+++|.++|+++.+++|++|||||++.+..+++|++++
T Consensus 81 V~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~aTHgvfs~~A~~~l~~s~Id~vvvTnTIp~~~~~~~~~Ki~vl 160 (184)
T PF14572_consen 81 VKGKICIIVDDIIDTGGTLIKAAELLKERGAKKVYACATHGVFSGDAPERLEESPIDEVVVTNTIPQEEQKLQCPKIKVL 160 (184)
T ss_dssp -TTSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEEEEEE---TTHHHHHHHSSESEEEEETTS--HHHHHH-TTEEEE
T ss_pred ccCCeEeeecccccchHHHHHHHHHHHHcCCCEEEEEEeCcccCchHHHHHhhcCCeEEEEeccccCchhhhcCCCEeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999997655679999999
Q ss_pred ehHHHHHHHHHHHhCCCCcccccc
Q psy17482 326 DVSMMFAEAVRRTHNGESVSYLFS 349 (353)
Q Consensus 326 sva~lla~~i~~~~~~~s~~~l~~ 349 (353)
||+++|||+|+|+|+|+|+|.||+
T Consensus 161 dis~llaeaI~rih~~eSvs~LFr 184 (184)
T PF14572_consen 161 DISPLLAEAIRRIHNGESVSYLFR 184 (184)
T ss_dssp --HHHHHHHHHHHHHTHTSCCGGS
T ss_pred ehHHHHHHHHHHHHcCCCHHHhcC
Confidence 999999999999999999999995
No 19
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=100.00 E-value=3.7e-37 Score=257.86 Aligned_cols=110 Identities=50% Similarity=0.671 Sum_probs=94.8
Q ss_pred ccCHHHHHHHHHHhCCCccCCCccccCCCCceeEEeCCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCeEEEE
Q psy17482 20 KASHFFAKQNAEYKGVQRYIPPRLSPEDRGQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAV 99 (353)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~dGE~~v~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~i~~v 99 (353)
++++.||++||+.||++ +.+..+.+|||||++|++++++||+|||||||+++++||++||||++++|+|++||++|++|
T Consensus 7 ~~~~~La~~ia~~L~~~-~~~~~~~~F~dGE~~v~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~i~~V 85 (116)
T PF13793_consen 7 SSSQDLAERIAEALGIP-LGKVETKRFPDGETYVRIPESVRGKDVFIIQSTSPPVNDNLMELLLLIDALRRAGAKRITLV 85 (116)
T ss_dssp SSGHHHHHHHHHHTTS--EE-EEEEE-TTS-EEEEESS--TTSEEEEE---SSSHHHHHHHHHHHHHHHHHTTBSEEEEE
T ss_pred CCCHHHHHHHHHHhCCc-eeeeEEEEcCCCCEEEEecccccCCceEEEEecCCchhHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 47899999999999999 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCccccccccCCCCCCCCchhHHHHhhhccccccCCCCcchHHHHHHHHHHcC
Q psy17482 100 IPCFPYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAG 155 (353)
Q Consensus 100 iPY~~YsRqDr~~~~~~~~~~~~~~~~~~~~~~~~kf~~~e~isak~vA~lL~~~g 155 (353)
+||||||||||+ . +|||+|+|.+|+||+++|
T Consensus 86 iPYl~YaRQDr~-~------------------------~ge~isak~~a~lL~~~G 116 (116)
T PF13793_consen 86 IPYLPYARQDRR-K------------------------PGEPISAKVVAKLLSAAG 116 (116)
T ss_dssp ESS-TTTTSSSS-S------------------------TTC--HHHHHHHHHHHHT
T ss_pred ccchhhhhhccC-C------------------------CCCcchHHHHHHHHHhcC
Confidence 999999999999 8 899999999999999987
No 20
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=99.79 E-value=1.2e-18 Score=155.45 Aligned_cols=152 Identities=21% Similarity=0.297 Sum_probs=118.2
Q ss_pred HHHHHHHHHcCCCEEEEEcCChhHHhccc-CccccccccHHHHHHHHHhhCC-CCCCeEEEecCCCchhhHHHHHHHcCC
Q psy17482 145 KLVANMLSVAGADHIITMDLHASQIQGFF-DIPVDNLYAEPAVLKWIKENIP-EWKNSIIVSPDAGGAKRVTSIADRLNV 222 (353)
Q Consensus 145 k~vA~lL~~~g~d~VitvDlHs~~~~~~F-~ip~~~l~a~~~La~~i~~~~~-~~~~~vvVspd~Gg~~ra~~la~~Lg~ 222 (353)
..++++|...|++++..+++||.+.++|| +.+ .+...|.+.+++.+.+. ..+..+|++|+.||+++|..+|..+|.
T Consensus 3 ~~~~~~l~~~ga~~~g~f~L~SG~~s~~y~d~~--~l~~~p~~~~~l~~~l~~~~~~d~Vvg~~~gGi~~A~~~a~~l~~ 80 (170)
T PRK13811 3 NTIAELLISYKAIEFGDFTLASGAKSRYYIDIK--TAITHPALLKEIAAEVAKRYDFDVVAGVAVGGVPLAVAVSLAAGK 80 (170)
T ss_pred HHHHHHHHHCCCEEECCEEEccCCcCCEEEeCc--hhccCHHHHHHHHHHHHhhCCCCEEEecCcCcHHHHHHHHHHHCC
Confidence 46799999999999999999999999988 543 35555555555544321 124468999999999999999999999
Q ss_pred cEEEEEEeecCCCceEEEEeecCCCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcCC
Q psy17482 223 EFALIHKERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACF 301 (353)
Q Consensus 223 ~~~~l~K~R~~~~~v~~~~~~gdv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~i 301 (353)
|+.+++|.+...+.. ....++++|++|+||||+++||+|+.++++.|+++||+-+.+++.-..- .++.+++++.++
T Consensus 81 p~~~~rK~~k~~g~~--~~~~g~~~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~v~~~~~~vdr~-~g~~~~l~~~gv 156 (170)
T PRK13811 81 PYAIIRKEAKDHGKA--GLIIGDVKGKRVLLVEDVTTSGGSALYGIEQLRAAGAVVDDVVTVVDRE-QGAEELLAELGI 156 (170)
T ss_pred CEEEEecCCCCCCCc--ceEEcccCCCEEEEEEecccccHHHHHHHHHHHHCCCeEEEEEEEEECC-ccHHHHHHhcCC
Confidence 999999887554432 2345778999999999999999999999999999999987777632221 245677765444
No 21
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.69 E-value=1.2e-16 Score=162.12 Aligned_cols=147 Identities=13% Similarity=0.193 Sum_probs=108.1
Q ss_pred HHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcE--EEEEEeecC-----CCc----e-EEE--Eeec-CCCCCE
Q psy17482 186 VLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEF--ALIHKERKK-----ANE----V-ASM--VLVG-DVKDRV 250 (353)
Q Consensus 186 La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~--~~l~K~R~~-----~~~----v-~~~--~~~g-dv~Gk~ 250 (353)
+.+.|.+......+.|+..|| +|.++|..+|+.+|+|+ .+++|++.. ..+ + ..+ ...+ .++||+
T Consensus 264 ~G~~La~~~~~~~d~Vv~vPd-~g~~~A~~~A~~lgip~~~~l~rk~~~~r~~i~~~qr~rn~~~~~~~~~~~~~v~gK~ 342 (445)
T PRK08525 264 MGEELAKKFPIKADFVVPVPD-SGVPAAIGYAQESGIPFEMAIVRNHYVGRTFIEPTQEMRNLKVKLKLNPMSKVLEGKR 342 (445)
T ss_pred HHHHHHHHhcccCCeEEECCc-hHHHHHHHHHHHhCCCccceEEEeeccccccCCHHHHHHhhheeEEecccccccCCCe
Confidence 344444333222356777777 56999999999999997 455554321 111 1 111 2223 489999
Q ss_pred EEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcCCCEEEEecCCCC-CCCCCCCCCeeEEehHH
Q psy17482 251 AILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTNTIPQ-DGHMKDCTKIRCIDVSM 329 (353)
Q Consensus 251 VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~id~ii~TnTi~~-~~~~~~~~ki~~lsva~ 329 (353)
|+||||+++||+|+.++++.|+++||++|++++|||+|..++...|..+.++++++||.-.. -.+....+-+..+|+..
T Consensus 343 VlLVDDvitTG~Tl~~a~~~Lr~aGA~~V~v~~~hp~~~~~~~~~i~~~~~~~li~~~~~~~ei~~~~~adsl~~ls~~~ 422 (445)
T PRK08525 343 IVVIDDSIVRGTTSKKIVSLLRAAGAKEIHLRIACPEIKFPCYYGIDTPTFEELISANKSVEEVRKYIGADSLSFLSIDE 422 (445)
T ss_pred EEEEecccCcHHHHHHHHHHHHhcCCCEEEEEEECCCcCCchhhhCcCCChhhEEEcCCCHHHHHHHhCCCeEeccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999997321 11123467788888876
Q ss_pred HHHH
Q psy17482 330 MFAE 333 (353)
Q Consensus 330 lla~ 333 (353)
+..-
T Consensus 423 l~~~ 426 (445)
T PRK08525 423 LTRS 426 (445)
T ss_pred HHHH
Confidence 6543
No 22
>PLN02293 adenine phosphoribosyltransferase
Probab=99.64 E-value=5e-15 Score=134.01 Aligned_cols=108 Identities=26% Similarity=0.301 Sum_probs=91.0
Q ss_pred CCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeecCCCceE-----------EEEe-ecCC-CCCEEEEEecccCChHHH
Q psy17482 198 KNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVA-----------SMVL-VGDV-KDRVAILVDDMADTCGTI 264 (353)
Q Consensus 198 ~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~v~-----------~~~~-~gdv-~Gk~VlIVDDII~TG~Tl 264 (353)
+..+|++|+.||+++|..+|..+|+|+.+++|.+..++.+. .+.+ .+++ +|++|+||||+++||+|+
T Consensus 62 ~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~rK~~k~~~~~~~~~~~~~~g~~~l~l~~~~i~~G~rVlIVDDvitTG~T~ 141 (187)
T PLN02293 62 GISVVAGIEARGFIFGPPIALAIGAKFVPLRKPGKLPGEVISEEYVLEYGTDCLEMHVGAVEPGERALVIDDLIATGGTL 141 (187)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHCCCEEEEEecCCCCCceEEEEEeccCCceEEEEEcCccCCCCEEEEEeccccchHHH
Confidence 45789999999999999999999999999998876433221 1111 2556 799999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcCCCEEE
Q psy17482 265 CHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVV 305 (353)
Q Consensus 265 ~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~id~ii 305 (353)
.++++.|+++|++.+.+++.|.+...++.++|.+..+..++
T Consensus 142 ~~~~~~l~~~Ga~~v~~~~~~~~~~~~g~~~l~~~~~~sl~ 182 (187)
T PLN02293 142 CAAINLLERAGAEVVECACVIELPELKGREKLNGKPLFVLV 182 (187)
T ss_pred HHHHHHHHHCCCEEEEEEEEEEcCCccHHHHhcCCceEEEE
Confidence 99999999999999999999999999999999766665555
No 23
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=99.62 E-value=5.5e-15 Score=132.54 Aligned_cols=150 Identities=15% Similarity=0.158 Sum_probs=104.9
Q ss_pred HHHHHHHHHHcCC----CEEEEEcCChhHHhcccCccccccccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHH
Q psy17482 144 AKLVANMLSVAGA----DHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADR 219 (353)
Q Consensus 144 ak~vA~lL~~~g~----d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~ 219 (353)
.+.+.+.|...|+ ++++.--.||+.+-+.+.+ ..+-.....+++++.+.+. +.++|++|+.||+++|..+|..
T Consensus 3 ~~~l~~~l~~~~a~~~g~f~l~SG~~S~~yid~~~~-~~~p~~~~~i~~~l~~~i~--~~d~ivg~~~ggi~lA~~lA~~ 79 (176)
T PRK13812 3 TDDLIAALRDADAVQFGEFELSHGGTSEYYVDKYLF-ETDPDCLRLIAEAFADRID--EDTKLAGVALGAVPLVAVTSVE 79 (176)
T ss_pred HHHHHHHHHHCCCEEeCCEEECcCCcCCEEEeCeec-cCCHHHHHHHHHHHHHHhc--cCCEEEEeecchHHHHHHHHHH
Confidence 4566777777765 3455545555433221111 1111224566677766542 2379999999999999999999
Q ss_pred cCCcEEEEEEeecCCCceEEEEeecCC-CCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCCh--hHHHHH
Q psy17482 220 LNVEFALIHKERKKANEVASMVLVGDV-KDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSG--PAINRI 296 (353)
Q Consensus 220 Lg~~~~~l~K~R~~~~~v~~~~~~gdv-~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~--~a~~~l 296 (353)
+|+|+.+.+|.+...++.+ .+.+++ +|++|+||||+++||+|+.++++.|+++|++.+.+++ ++.+ ++.+++
T Consensus 80 l~~p~~~~rk~~k~yg~~~--~~~g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~vv~~~v---lvdr~~~~~~~l 154 (176)
T PRK13812 80 TGVPYVIARKQAKEYGTGN--RIEGRLDEGEEVVVLEDIATTGQSAVDAVEALREAGATVNRVLV---VVDREEGARENL 154 (176)
T ss_pred HCCCEEEEeccCCcCCCCC--eEEecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCeEEEEEE---EEECCcchHHHH
Confidence 9999999999876544321 234566 7999999999999999999999999999999887777 3433 445666
Q ss_pred hhcCC
Q psy17482 297 NNACF 301 (353)
Q Consensus 297 ~~s~i 301 (353)
++.++
T Consensus 155 ~~~g~ 159 (176)
T PRK13812 155 ADHDV 159 (176)
T ss_pred HhcCC
Confidence 65554
No 24
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=99.57 E-value=3.7e-14 Score=130.18 Aligned_cols=151 Identities=17% Similarity=0.176 Sum_probs=103.1
Q ss_pred HHHHHHHHcCC----CEEEEEcCChhHHhcccCcccc--ccccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHH
Q psy17482 146 LVANMLSVAGA----DHIITMDLHASQIQGFFDIPVD--NLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADR 219 (353)
Q Consensus 146 ~vA~lL~~~g~----d~VitvDlHs~~~~~~F~ip~~--~l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~ 219 (353)
.+..+|...|+ +++++.-.||+-+ ++...- +-.....+++.+.+...+.+.++|++|+.||+++|..+|.+
T Consensus 12 ~l~~~l~~~gal~~g~F~L~SG~~S~~y---~D~~~i~~~p~~l~~i~~~l~~~~~~~~~d~IvG~~~~Gi~~A~~vA~~ 88 (206)
T PRK13809 12 QAVAILYQIGAIKFGKFILASGEETPIY---VDMRLVISSPEVLQTIATLIWRLRPSFNSSLLCGVPYTALTLATSISLK 88 (206)
T ss_pred HHHHHHHHcCCEEECCEEECCcCCCCEE---EEChhhccCHHHHHHHHHHHHHHhccCCCCEEEEecCccHHHHHHHHHH
Confidence 34555555665 4566666666533 232110 00123344444444333345679999999999999999999
Q ss_pred cCCcEEEEEEeecCCCceEEEEeecC-CCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhh
Q psy17482 220 LNVEFALIHKERKKANEVASMVLVGD-VKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINN 298 (353)
Q Consensus 220 Lg~~~~~l~K~R~~~~~v~~~~~~gd-v~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~ 298 (353)
+++|+.+.+|.++..++...+.+.+. .+|++|+||||+++||+|+.++++.|+++|+..+.+++.-... .++.+++.+
T Consensus 89 l~~p~~~~RK~~K~~G~~~~~~~~g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~vv~v~vlvdr~-~~~~~~l~~ 167 (206)
T PRK13809 89 YNIPMVLRRKELKNVDPSDAIKVEGLFTPGQTCLVINDMVSSGKSIIETAVALEEEGLVVREALVFLDRQ-KGACQPLGP 167 (206)
T ss_pred hCCCEEEEeCCCCCCCCcCEEEEccccCCCCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECc-ccHHHHHHh
Confidence 99999999987766665443333444 4899999999999999999999999999999987777732221 256677755
Q ss_pred cC
Q psy17482 299 AC 300 (353)
Q Consensus 299 s~ 300 (353)
.+
T Consensus 168 ~g 169 (206)
T PRK13809 168 QG 169 (206)
T ss_pred cC
Confidence 43
No 25
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=99.57 E-value=2e-14 Score=127.76 Aligned_cols=107 Identities=15% Similarity=0.163 Sum_probs=82.6
Q ss_pred cHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcE--EEEEEe--ecC---CCceEE-EEeecCCCCCEEEE
Q psy17482 182 AEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEF--ALIHKE--RKK---ANEVAS-MVLVGDVKDRVAIL 253 (353)
Q Consensus 182 a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~--~~l~K~--R~~---~~~v~~-~~~~gdv~Gk~VlI 253 (353)
....||++|.+.+. .+++++|+|+.||+.+|+.+++.|+.++ .++.-. +.. .+.... ..+..+++||+|+|
T Consensus 11 ~i~~lA~~I~~~~~-~~~~vvv~i~~GG~~~a~~l~~~L~~~~~v~~i~~~~Y~~~~~~~~~~~~~~~~~~~~~gk~vli 89 (166)
T TIGR01203 11 RIAELAKQITEDYA-GKPLVLLCVLKGSFPFFADLIRYIAVPVQVDFMAVSSYGNGMQSSGDVKILKDLDLSIKGKDVLI 89 (166)
T ss_pred HHHHHHHHHHHHcC-CCCeEEEEEccCCHHHHHHHHHhcCCCceeeEEEEeeccCCCcccCceEEecCCCCCCCCCEEEE
Confidence 35678888877653 3679999999999999999999999874 334322 211 122222 12455789999999
Q ss_pred EecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhH
Q psy17482 254 VDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPA 292 (353)
Q Consensus 254 VDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a 292 (353)
||||++||+|+.++++.|++.||++|+++| ++.++.
T Consensus 90 vDDii~TG~Tl~~~~~~l~~~g~~~i~~~~---l~~k~~ 125 (166)
T TIGR01203 90 VEDIVDTGLTLQYLLDLLKARKPKSLKIVT---LLDKPS 125 (166)
T ss_pred EeeeeCcHHHHHHHHHHHHHCCCCEEEEEE---EEecCc
Confidence 999999999999999999999999999998 666643
No 26
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.56 E-value=3e-14 Score=128.22 Aligned_cols=106 Identities=20% Similarity=0.330 Sum_probs=83.5
Q ss_pred cHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcE--EEEEEeecCCCc----eEE-EEeecCCCCCEEEEE
Q psy17482 182 AEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEF--ALIHKERKKANE----VAS-MVLVGDVKDRVAILV 254 (353)
Q Consensus 182 a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~--~~l~K~R~~~~~----v~~-~~~~gdv~Gk~VlIV 254 (353)
....+|++|.+.+ +.+++++|+++.||..+|+.+++.+++|+ .++++.+....+ ... .....+++||+||||
T Consensus 25 ~i~~la~~i~~~~-~~~~~viV~i~~gg~~~A~~La~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~gk~VLIV 103 (181)
T PRK09162 25 AIDRMADEITADL-ADENPLVLCVMGGGLVFTGQLLPRLDFPLEFDYLHATRYRNETTGGELVWKVKPRESLKGRTVLVV 103 (181)
T ss_pred HHHHHHHHHHHHc-CCCCeEEEEECCCcHHHHHHHHHHcCCCcccCEEEEEecCCCccCCceeEecCCCCCCCCCEEEEE
Confidence 3567888887764 23567999999999999999999999875 366666643222 111 123457899999999
Q ss_pred ecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChh
Q psy17482 255 DDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGP 291 (353)
Q Consensus 255 DDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~ 291 (353)
|||+|||.|+.++++.|++.||++|++++ ++.+.
T Consensus 104 DDIidTG~Tl~~~~~~Lk~~Ga~~V~~av---L~~k~ 137 (181)
T PRK09162 104 DDILDEGHTLAAIRDRCLEMGAAEVYSAV---LVDKT 137 (181)
T ss_pred ccccCcHHHHHHHHHHHHhCCCCEEEEEE---EEEcC
Confidence 99999999999999999999999999998 55553
No 27
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.54 E-value=6.1e-14 Score=125.97 Aligned_cols=108 Identities=14% Similarity=0.211 Sum_probs=86.2
Q ss_pred HHHHHHHHHhhCCC-CCCeEEEecCCCchhhHHHHHHHcCCc--EEEEEEeecC-----CCceEEE-EeecCCCCCEEEE
Q psy17482 183 EPAVLKWIKENIPE-WKNSIIVSPDAGGAKRVTSIADRLNVE--FALIHKERKK-----ANEVASM-VLVGDVKDRVAIL 253 (353)
Q Consensus 183 ~~~La~~i~~~~~~-~~~~vvVspd~Gg~~ra~~la~~Lg~~--~~~l~K~R~~-----~~~v~~~-~~~gdv~Gk~VlI 253 (353)
...+|.+|.+.+.+ ..++++|+++.||+.+|+.+++.|+.| +.+++..+.. .+++... .+..+++||+|||
T Consensus 18 i~~lA~~I~~~~~~~~~~~vvvgI~~Gg~~fa~~L~~~L~~~~~v~~l~~ssY~~~~~~~~~v~i~~~~~~~v~gk~VLl 97 (178)
T PRK15423 18 IAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQVSHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLI 97 (178)
T ss_pred HHHHHHHHHHHhcccCCCeEEEEEecCChHHHHHHHHHhCCCcceeEEEEEEecCCCcccCceEEecCCCCCCCCCEEEE
Confidence 56788888776532 246899999999999999999999987 4577776653 2233322 2345799999999
Q ss_pred EecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHH
Q psy17482 254 VDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAI 293 (353)
Q Consensus 254 VDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~ 293 (353)
||||+|||.||.++.+.|++.||++|.+++ ++.++..
T Consensus 98 VDDIiDTG~TL~~l~~~l~~~~~~~v~~av---L~~K~~~ 134 (178)
T PRK15423 98 VEDIIDSGNTLSKVREILSLREPKSLAICT---LLDKPSR 134 (178)
T ss_pred EeeecCchHHHHHHHHHHHhCCCCEEEEEE---EEECCCC
Confidence 999999999999999999999999999998 7777643
No 28
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=99.54 E-value=1.1e-13 Score=123.62 Aligned_cols=100 Identities=23% Similarity=0.230 Sum_probs=78.6
Q ss_pred CCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeecCCCce-----------EEEEeecC--CCCCEEEEEecccCChHHH
Q psy17482 198 KNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEV-----------ASMVLVGD--VKDRVAILVDDMADTCGTI 264 (353)
Q Consensus 198 ~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~v-----------~~~~~~gd--v~Gk~VlIVDDII~TG~Tl 264 (353)
+.++|++|+.||+.+|..+|..+++|+.+++|.+...... ..+.+.++ ++|++|+||||+++||+|+
T Consensus 51 ~~d~Ivgv~~~Gi~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~g~~VLIVDDivtTG~Tl 130 (175)
T PRK02304 51 DIDKIVGIEARGFIFGAALAYKLGIGFVPVRKPGKLPRETISESYELEYGTDTLEIHKDAIKPGDRVLIVDDLLATGGTL 130 (175)
T ss_pred CCCEEEEEccchHHHHHHHHHHhCCCEEEEEcCCCCCCceEeEEEecccCceEEEEchhhcCCCCEEEEEeCCccccHHH
Confidence 4689999999999999999999999998887765432111 12223333 7899999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEEEEeccCChhHHHHHh
Q psy17482 265 CHAAEKLMEAGATKVYAILTHGIFSGPAINRIN 297 (353)
Q Consensus 265 ~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~ 297 (353)
.++++.|+++||+.|.++|.+..-..++.+++.
T Consensus 131 ~~~~~~l~~~Ga~~v~v~vl~~~~~~~g~~~l~ 163 (175)
T PRK02304 131 EAAIKLLERLGAEVVGAAFVIELPDLGGREKLE 163 (175)
T ss_pred HHHHHHHHHcCCEEEEEEEEEEcccccchhhcC
Confidence 999999999999999999865544333566664
No 29
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=99.52 E-value=1.7e-13 Score=114.39 Aligned_cols=102 Identities=27% Similarity=0.369 Sum_probs=79.8
Q ss_pred cHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeec----------CCCceEE-EEeecCCCCCE
Q psy17482 182 AEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERK----------KANEVAS-MVLVGDVKDRV 250 (353)
Q Consensus 182 a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~----------~~~~v~~-~~~~gdv~Gk~ 250 (353)
....++++|.+.. .+.+.+++++.||+++|..++..++.|+.+..+... ....... ......++||+
T Consensus 13 ~~~~la~~i~~~~--~~~~~ivgi~~~G~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~ 90 (125)
T PF00156_consen 13 LAERLAEQIKESG--FDFDVIVGIPRGGIPLAAALARALGIPLVFVRKRKSYYPGSDKTSREKNNQELFIIDKEDIKGKR 90 (125)
T ss_dssp HHHHHHHHHHHHT--TTSSEEEEETTTTHHHHHHHHHHHTHEEEEEEEEEEEESEEEEEEEETEEEEEEEEESSSGTTSE
T ss_pred HHHHHHHHHHHhC--CCCCEEEeehhccHHHHHHHHHHhCCCccceeeeecccccchhhhhccCceEEeeccccccccee
Confidence 3567888888764 345569999999999999999999999876543221 1111111 12355789999
Q ss_pred EEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEe
Q psy17482 251 AILVDDMADTCGTICHAAEKLMEAGATKVYAILTH 285 (353)
Q Consensus 251 VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tH 285 (353)
|+||||+++||+|+.++++.|+++|+++|.+++.|
T Consensus 91 vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~~vl~ 125 (125)
T PF00156_consen 91 VLIVDDVIDTGGTLKEAIELLKEAGAKVVGVAVLV 125 (125)
T ss_dssp EEEEEEEESSSHHHHHHHHHHHHTTBSEEEEEEEE
T ss_pred EEEEeeeEcccHHHHHHHHHHHhCCCcEEEEEEEC
Confidence 99999999999999999999999999999999854
No 30
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.52 E-value=2.8e-14 Score=145.71 Aligned_cols=147 Identities=16% Similarity=0.176 Sum_probs=104.6
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEE-EEEeec--------------CCCceEEEEeecCCCCC
Q psy17482 185 AVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFAL-IHKERK--------------KANEVASMVLVGDVKDR 249 (353)
Q Consensus 185 ~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~-l~K~R~--------------~~~~v~~~~~~gdv~Gk 249 (353)
.+++.|.+..+. +..+|++...+|.++|..+|+.+|+|+.. +.+.|. .....+.....++++||
T Consensus 276 ~~G~~La~~~~~-~~D~Vv~vPdsg~~~A~~~A~~lgip~~~~l~r~~~~~rtfi~~~q~~R~~~~~~k~~~~~~~v~gk 354 (469)
T PRK05793 276 RAGRQLYKEYPV-DADIVIGVPDSGIPAAIGYAEASGIPYGIGFIKNKYVGRTFIAPSQELRERAVRVKLNPLKVNVEGK 354 (469)
T ss_pred HHHHHHHHhcCC-CCCEEEEcCccHHHHHHHHHHHhCCCEeeeEEEeeeccccccChhHhhhhhhheEecccCccccCCC
Confidence 344444444322 22344444445799999999999999864 333331 00111111234578999
Q ss_pred EEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcCCCEEEEecCCC-CCCCCCCCCCeeEEehH
Q psy17482 250 VAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTNTIP-QDGHMKDCTKIRCIDVS 328 (353)
Q Consensus 250 ~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~id~ii~TnTi~-~~~~~~~~~ki~~lsva 328 (353)
+|+||||+|+||.|+.++++.|+++||++|+++++||.|..++...|..+..+++++.+--. ...+....+.+..+|+.
T Consensus 355 ~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V~~~~~~p~~~~p~~~gid~~~~~elia~~~~~~ei~~~~g~dsl~~ls~~ 434 (469)
T PRK05793 355 RVVLIDDSIVRGTTSKRLVELLRKAGAKEVHFRVSSPPVKYPCYFGIDTPYRKELIGANMSVEEIREMIGADSLGYLSIE 434 (469)
T ss_pred EEEEEccccCchHHHHHHHHHHHHcCCCEEEEEEECCCcCcchhhhccCCChhhEEEcCCCHHHHHHHhCCCeEeccCHH
Confidence 99999999999999999999999999999999999999999999999988899999876421 11111245678888887
Q ss_pred HHHH
Q psy17482 329 MMFA 332 (353)
Q Consensus 329 ~lla 332 (353)
.++.
T Consensus 435 ~l~~ 438 (469)
T PRK05793 435 GLLE 438 (469)
T ss_pred HHHH
Confidence 6654
No 31
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=99.51 E-value=1.2e-13 Score=124.12 Aligned_cols=119 Identities=21% Similarity=0.353 Sum_probs=88.4
Q ss_pred HHhcccCccccccccHHHHHHHH----HhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeecCC--Cc----e
Q psy17482 168 QIQGFFDIPVDNLYAEPAVLKWI----KENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKA--NE----V 237 (353)
Q Consensus 168 ~~~~~F~ip~~~l~a~~~La~~i----~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~--~~----v 237 (353)
++++.|+++..++...+.+++.+ .+.+.+ +.++|++++.||+++|..+|+.+++|+.+++|.+... .. .
T Consensus 19 ~~~~~~~i~~~k~~~dp~l~~~~~~~La~~l~~-~~d~Iv~v~~gGiplA~~lA~~L~~p~~~~~k~~~~~~~~~~~~~~ 97 (178)
T PRK07322 19 RVGPDLAIALFVILGDTELTEAAAEALAKRLPT-EVDVLVTPETKGIPLAHALSRRLGKPYVVARKSRKPYMQDPIIQEV 97 (178)
T ss_pred EeCCCCEEEEEhhhCCHHHHHHHHHHHHHHcCC-CCCEEEEeccCCHHHHHHHHHHHCCCEEEEEEeCCCCCCCceEEEE
Confidence 34566777777777755555544 334433 4579999999999999999999999998877765421 11 0
Q ss_pred E--------EEEe----ecCCCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCCh
Q psy17482 238 A--------SMVL----VGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSG 290 (353)
Q Consensus 238 ~--------~~~~----~gdv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~ 290 (353)
. .... ..+++||+|+||||+++||+|+.++++.|+++||+.|.+++ ++..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~aa~~~L~~~GA~~V~~~~---v~~~ 159 (178)
T PRK07322 98 VSITTGKPQLLVLDGADAEKLKGKRVAIVDDVVSTGGTLTALERLVERAGGQVVAKAA---IFAE 159 (178)
T ss_pred EEEEeccceEEEecCccccccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEE---EEEc
Confidence 0 1111 12468999999999999999999999999999999999887 5544
No 32
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=99.51 E-value=5.2e-13 Score=122.06 Aligned_cols=154 Identities=19% Similarity=0.226 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHcCC----CEEEEEcCChhHHh---cccCccccccccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHH
Q psy17482 143 SAKLVANMLSVAGA----DHIITMDLHASQIQ---GFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTS 215 (353)
Q Consensus 143 sak~vA~lL~~~g~----d~VitvDlHs~~~~---~~F~ip~~~l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~ 215 (353)
+.+.+++.|...|+ +++++-..|++.+- ..|.-|...-.....+++.+.+.. .+.++|++++.||+++|..
T Consensus 4 ~~~~~~~~~~~~~a~~~G~f~l~SG~~s~~y~d~~~i~~~p~~~~~~~~~la~~i~~~~--~~~d~Ivgi~~gG~~~A~~ 81 (202)
T PRK00455 4 YAREFIEFLLEIGALLFGHFTLSSGRKSPYYFDCRKLLSYPEALALLGRFLAEAIKDSG--IEFDVVAGPATGGIPLAAA 81 (202)
T ss_pred HHHHHHHHHHHcCCeeCCCEEECCCCcCCeeEeChhhhcCHHHHHHHHHHHHHHHHhcC--CCCCEEEecccCcHHHHHH
Confidence 56678888888876 46677777766432 122222221223455666665432 2445899999999999999
Q ss_pred HHHHcCCcEEEEEEeecCCCceEEEEeec-CCCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHH
Q psy17482 216 IADRLNVEFALIHKERKKANEVASMVLVG-DVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAIN 294 (353)
Q Consensus 216 la~~Lg~~~~~l~K~R~~~~~v~~~~~~g-dv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~ 294 (353)
+|..+++|+.+.+|.+...+... .+.+ ..+|++|+||||+++||+|+.++++.|+++||+.+.+++....- .+..+
T Consensus 82 la~~L~~~~~~~rk~~~~~g~~~--~~~~~~~~g~~VliVDDvi~tG~Tl~~~~~~l~~~Ga~~v~~~vlv~~~-~~~~~ 158 (202)
T PRK00455 82 VARALDLPAIFVRKEAKDHGEGG--QIEGRRLFGKRVLVVEDVITTGGSVLEAVEAIRAAGAEVVGVAVIVDRQ-SAAQE 158 (202)
T ss_pred HHHHhCCCEEEEecccCCCCCCc--eEEccCCCCCEEEEEecccCCcHHHHHHHHHHHHcCCEEEEEEEEEECc-chHHH
Confidence 99999999998887654433211 2223 45799999999999999999999999999999999888843321 23345
Q ss_pred HHhhcCC
Q psy17482 295 RINNACF 301 (353)
Q Consensus 295 ~l~~s~i 301 (353)
++++.++
T Consensus 159 ~~~~~g~ 165 (202)
T PRK00455 159 VFADAGV 165 (202)
T ss_pred HHHhcCC
Confidence 5554444
No 33
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=99.49 E-value=3.1e-13 Score=122.35 Aligned_cols=132 Identities=18% Similarity=0.199 Sum_probs=89.9
Q ss_pred HHHHHHHcCC----CEEEEEcCChhHHh---cccCccccccccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHH
Q psy17482 147 VANMLSVAGA----DHIITMDLHASQIQ---GFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADR 219 (353)
Q Consensus 147 vA~lL~~~g~----d~VitvDlHs~~~~---~~F~ip~~~l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~ 219 (353)
+++++...|+ ++.++...|++.+- .++.-|..--..+..+++++.+. +.+.++|++++.||+++|..+|..
T Consensus 2 ~~~~~~~~~~~~~g~f~l~sg~~s~~yid~~~l~~~p~~~~~~~~~La~~i~~~--~~~~d~Ivgi~~gGi~~A~~la~~ 79 (187)
T TIGR01367 2 VLDIYKQAGALHEGHFLLSSGKHSPYFLQSATLLEHPEALMELGGELAQKILDY--GLKVDFIVGPAMGGVILGYEVARQ 79 (187)
T ss_pred HHHHHHHcCCeeeceEEecCCCcCCeeEechhhhcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEccCcHHHHHHHHHH
Confidence 3445555554 45556666665431 22221211112245666666432 235689999999999999999999
Q ss_pred cCCcEEEEEEeecCCCceEEEEeecCCCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEE
Q psy17482 220 LNVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAIL 283 (353)
Q Consensus 220 Lg~~~~~l~K~R~~~~~v~~~~~~gdv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~ 283 (353)
+++|+.+.+|.+ +......-..-.+|++|+|||||++||+|+.++++.|+++||+.|.+++
T Consensus 80 L~~~~i~~~k~~---~~~~~~~~~~l~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~Ga~vv~~~v 140 (187)
T TIGR01367 80 LSVRSIFAEREG---GGMKLRRGFAVKPGEKFVAVEDVVTTGGSLLEAIRAIEGQGGQVVGLAC 140 (187)
T ss_pred hCCCeEEEEEeC---CcEEEeecccCCCCCEEEEEEeeecchHHHHHHHHHHHHcCCeEEEEEE
Confidence 999987766544 2221111111247999999999999999999999999999999998888
No 34
>PRK11595 DNA utilization protein GntX; Provisional
Probab=99.49 E-value=3.2e-14 Score=132.36 Aligned_cols=132 Identities=23% Similarity=0.279 Sum_probs=91.1
Q ss_pred cccccCCCCcchHHHHHHHHHH-----------cCCCEEEEEcCChhHH-hcccCccccccccHHHHHHHHHhhCCCCCC
Q psy17482 132 NEWKFRSRAPISAKLVANMLSV-----------AGADHIITMDLHASQI-QGFFDIPVDNLYAEPAVLKWIKENIPEWKN 199 (353)
Q Consensus 132 ~~~kf~~~e~isak~vA~lL~~-----------~g~d~VitvDlHs~~~-~~~F~ip~~~l~a~~~La~~i~~~~~~~~~ 199 (353)
.+||| .+..-.++.++++|.. ...|.|++|++|..+. ++.|| ++..+|+.+.+.. + .
T Consensus 79 ~~~Ky-~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~d~ivpVPl~~~r~~~RGfn-------q~~~la~~la~~~-~--~ 147 (227)
T PRK11595 79 HQLKF-SRRSELASVLARLLLLEWLQARRSTGLQKPDRIISVPLHQRRHWRRGFN-------QSDLLCRPLARWL-G--C 147 (227)
T ss_pred HHHHH-CccHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEecCCCHHHHHHCCCC-------HHHHHHHHHHHHH-C--C
Confidence 36899 6676778888887742 1458999999998764 55687 5777887776543 1 1
Q ss_pred eEEEecCCCchhhHHHHHHHcCCcEEEEEEeecCCCceEEEEeecCCCCCEEEEEecccCChHHHHHHHHHHHhcCCCEE
Q psy17482 200 SIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKV 279 (353)
Q Consensus 200 ~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~v~~~~~~gdv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V 279 (353)
.++.+.+.+.+..+.+.+++. ++|.. +....+.+.++++|++|+|||||+|||.|+.++++.|+++|+.+|
T Consensus 148 ----~~~~~~l~r~~~~~~q~~l~~----~~R~~-n~~~~f~~~~~~~~~~vllvDDv~tTG~Tl~~~~~~L~~~g~~~V 218 (227)
T PRK11595 148 ----DYDSEALTRTRATATQHFLSA----RLRKR-NLKNAFRLELPVQGQHMAIVDDVVTTGSTVAEIAQLLLRNGAASV 218 (227)
T ss_pred ----CCcccceEEecCCCCcccCCH----HHHhh-hhhhhhccCCCCCCCEEEEEeeeecchHHHHHHHHHHHHcCCcEE
Confidence 123334444444444444331 22322 111123445678999999999999999999999999999999999
Q ss_pred EEEE
Q psy17482 280 YAIL 283 (353)
Q Consensus 280 ~~~~ 283 (353)
++++
T Consensus 219 ~~~~ 222 (227)
T PRK11595 219 QVWC 222 (227)
T ss_pred EEEE
Confidence 9987
No 35
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=99.49 E-value=1.3e-13 Score=124.74 Aligned_cols=148 Identities=18% Similarity=0.168 Sum_probs=112.7
Q ss_pred cccccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEEE--EEeecCC------------C--------
Q psy17482 178 DNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALI--HKERKKA------------N-------- 235 (353)
Q Consensus 178 ~~l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l--~K~R~~~------------~-------- 235 (353)
|.-++...||+.|.... +.++.+|.+...||++.|..+|+.||.|+.++ +|--... +
T Consensus 6 DR~dAGr~La~~l~~~~-~~~~~iVlaLpRGGvpva~evA~~lga~ldvliVrKiG~P~n~E~aiGAvae~g~~v~n~~~ 84 (220)
T COG1926 6 DRTDAGRKLAQELAALR-DLKDVIVLALPRGGVPVAFEVAQALGAPLDVLIVRKIGAPGNPELAIGAVAEGGDVVLNYDV 84 (220)
T ss_pred cHHHHHHHHHHHHHhhc-cCCCcEEEEecCCCchHHHHHHHHhCCCeeEEEEeecCCCCCchhceeeeccCCcEecchhh
Confidence 34567889999997653 35788999999999999999999999998754 4422110 0
Q ss_pred --------------------ce-------EEEEeecCCCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccC
Q psy17482 236 --------------------EV-------ASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIF 288 (353)
Q Consensus 236 --------------------~v-------~~~~~~gdv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglf 288 (353)
++ .......+++||+||||||-+.||.||..|++.++++|+++|++++ |++
T Consensus 85 ~~~~~i~~~~i~~~~~~e~~El~rrr~~yr~~~~~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAV--PV~ 162 (220)
T COG1926 85 VRSLGIDDAYIEAAAARERKELLRRREAYRGGRPVPSLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAV--PVA 162 (220)
T ss_pred hhhccCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEc--ccC
Confidence 00 0111233689999999999999999999999999999999999998 899
Q ss_pred ChhHHHHHhhcCCCEEEEecCCCCCCCC-CCCCCeeEEehHH
Q psy17482 289 SGPAINRINNACFEAVVVTNTIPQDGHM-KDCTKIRCIDVSM 329 (353)
Q Consensus 289 s~~a~~~l~~s~id~ii~TnTi~~~~~~-~~~~ki~~lsva~ 329 (353)
+.++.+.|+ +..|+|+|..+-...... ..+..|+++|-.+
T Consensus 163 p~~a~~~l~-s~~D~vvc~~~P~~F~AVg~~Y~dF~q~sdeE 203 (220)
T COG1926 163 PEDAAAELE-SEADEVVCLYMPAPFEAVGEFYRDFRQVSDEE 203 (220)
T ss_pred CHHHHHHHH-hhcCeEEEEcCCccHHHHHHHHHHHhhcCHHH
Confidence 999999997 689999998886553321 2345555655444
No 36
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=99.49 E-value=2.6e-13 Score=124.01 Aligned_cols=105 Identities=20% Similarity=0.330 Sum_probs=80.6
Q ss_pred CCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeecCCCc---eEE-E-EeecCCCCCEEEEEecccCChHHHHHHHHHHH
Q psy17482 198 KNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANE---VAS-M-VLVGDVKDRVAILVDDMADTCGTICHAAEKLM 272 (353)
Q Consensus 198 ~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~---v~~-~-~~~gdv~Gk~VlIVDDII~TG~Tl~~aa~~Lk 272 (353)
+.++|++++.||+++|..+|..|+.++.++++.+...+. ... . ...++++||+|+||||+++||+|+.++++.|+
T Consensus 85 ~~D~Ivgi~~gG~~~A~~lA~~L~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~gk~VlIVDDVitTG~Tl~~ai~~l~ 164 (200)
T PRK02277 85 EVDVVVGIAKSGVPLATLVADELGKDLAIYHPKKWDHGEGEKKTGSFSRNFASVEGKRCVIVDDVITSGTTMKETIEYLK 164 (200)
T ss_pred CCCEEEeeccCCHHHHHHHHHHhCCCcEEEecccccccccccccceeccccccCCcCEEEEEeeccCchHHHHHHHHHHH
Confidence 457999999999999999999999999877765532221 111 1 11246899999999999999999999999999
Q ss_pred hcCCCEEEEEEEeccCChhHHHHHhhcCCCEEE
Q psy17482 273 EAGATKVYAILTHGIFSGPAINRINNACFEAVV 305 (353)
Q Consensus 273 ~~GA~~V~~~~tHglfs~~a~~~l~~s~id~ii 305 (353)
++||+.+.+++ ++++++.+.+....+..++
T Consensus 165 ~~Ga~~v~v~v---lvdk~g~~~~~~vpv~sl~ 194 (200)
T PRK02277 165 EHGGKPVAVVV---LIDKSGIDEIDGVPVYSLI 194 (200)
T ss_pred HcCCEEEEEEE---EEECcchhhhcCCCeEEEE
Confidence 99999999988 6666666555433344444
No 37
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.48 E-value=3.3e-13 Score=119.22 Aligned_cols=107 Identities=21% Similarity=0.276 Sum_probs=88.9
Q ss_pred HHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCc--EEEEEEeecC-----CCceEEE-EeecCCCCCEEEEE
Q psy17482 183 EPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVE--FALIHKERKK-----ANEVASM-VLVGDVKDRVAILV 254 (353)
Q Consensus 183 ~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~--~~~l~K~R~~-----~~~v~~~-~~~gdv~Gk~VlIV 254 (353)
...+|++|.+.+. .+++++|+..+|+++|+..+.++++.| +.+++-.+.. .+.+... .+..+++||+||||
T Consensus 21 i~ela~~I~~~y~-g~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg~v~i~kDld~di~grdVLiV 99 (178)
T COG0634 21 IKELAAQITEDYG-GKDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKILKDLDEDIKGRDVLIV 99 (178)
T ss_pred HHHHHHHHHHhhC-CCceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCcccCCceEEecccccCCCCCeEEEE
Confidence 5678999988764 489999999999999999999999876 4566654433 2334332 45778999999999
Q ss_pred ecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHH
Q psy17482 255 DDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAI 293 (353)
Q Consensus 255 DDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~ 293 (353)
|||+|||.||..+.+.|+.+||+++.+++ ++.++..
T Consensus 100 eDIiDsG~TLs~i~~~l~~r~a~sv~i~t---LldK~~~ 135 (178)
T COG0634 100 EDIIDSGLTLSKVRDLLKERGAKSVRIAT---LLDKPER 135 (178)
T ss_pred ecccccChhHHHHHHHHHhCCCCeEEEEE---EeeCccc
Confidence 99999999999999999999999999998 8888644
No 38
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=99.48 E-value=8.5e-13 Score=121.44 Aligned_cols=114 Identities=22% Similarity=0.269 Sum_probs=97.0
Q ss_pred CCeEEEecCCCchhhHHHHHHHcC-CcEEEEEEeecCCC-ceE--EEEeecCCCCCEEEEEecccCChHHHHHHHHHHHh
Q psy17482 198 KNSIIVSPDAGGAKRVTSIADRLN-VEFALIHKERKKAN-EVA--SMVLVGDVKDRVAILVDDMADTCGTICHAAEKLME 273 (353)
Q Consensus 198 ~~~vvVspd~Gg~~ra~~la~~Lg-~~~~~l~K~R~~~~-~v~--~~~~~gdv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~ 273 (353)
+++++|+++.||..++..+++.++ .++.++.++|.... +.. ...+..+++||+|||||||++||+|+..+++.|++
T Consensus 70 ~~~vvV~IlrgG~~~~~~l~~~l~~~~~~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ai~~L~~ 149 (209)
T PRK00129 70 KKLVIVPILRAGLGMVDGVLKLIPSARVGHIGLYRDEETLEPVEYYVKLPEDIDERTVIVVDPMLATGGSAIAAIDLLKK 149 (209)
T ss_pred CeEEEEEEeCCCHHHHHHHHHhCCcCeeeeEEEEeCCCCCCCEEEEeeCCCcCCCCEEEEECCcccchHHHHHHHHHHHH
Confidence 468999999999999999999997 57777878785422 211 22356689999999999999999999999999999
Q ss_pred cCCCEEEEEEEeccCChhHHHHHhhcCCCEEEEecCCCCC
Q psy17482 274 AGATKVYAILTHGIFSGPAINRINNACFEAVVVTNTIPQD 313 (353)
Q Consensus 274 ~GA~~V~~~~tHglfs~~a~~~l~~s~id~ii~TnTi~~~ 313 (353)
+|+++|.++++ +++++++++|.+++.+--++|.+|...
T Consensus 150 ~G~~~I~~~~l--l~~~~gl~~l~~~~p~v~i~~~~iD~~ 187 (209)
T PRK00129 150 RGAKNIKVLCL--VAAPEGIKALEEAHPDVEIYTAAIDEK 187 (209)
T ss_pred cCCCEEEEEEE--ecCHHHHHHHHHHCCCcEEEEEeecCC
Confidence 99999999996 888999999998888888889888653
No 39
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=99.46 E-value=6e-13 Score=120.65 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=85.5
Q ss_pred HHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCC---cE--EEEEEeecCC-----CceEEE--EeecCCCCCE
Q psy17482 183 EPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNV---EF--ALIHKERKKA-----NEVASM--VLVGDVKDRV 250 (353)
Q Consensus 183 ~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~---~~--~~l~K~R~~~-----~~v~~~--~~~gdv~Gk~ 250 (353)
...+|++|.+.+. .++++++++..||+.+|..+++.|+. |+ .+++..+... +.+... ....+++||+
T Consensus 21 i~~lA~~I~~~~~-~~~~vivgi~~Gg~~fa~~L~~~L~~~~~~~~i~fi~~~sy~~~~~~~g~~~i~~~~~~~~v~gk~ 99 (189)
T PLN02238 21 VAELAAQIASDYA-GKSPVVLGVATGAFMFLADLVRAIQPLPRGLTVDFIRASSYGGGTESSGVAKVSGADLKIDVKGKH 99 (189)
T ss_pred HHHHHHHHHHHcC-CCCcEEEEEccCCHHHHHHHHHHhCccCCCeEEEEEEeeecCCCccccCceeEecCCCCCCCCCCE
Confidence 4568888877642 35689999999999999999999998 65 3565544321 222222 2345789999
Q ss_pred EEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHH
Q psy17482 251 AILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINR 295 (353)
Q Consensus 251 VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~ 295 (353)
|+|||||+|||.|+.++++.|++.||++|.++| ++.++....
T Consensus 100 VliVDDIidTG~Tl~~~~~~l~~~g~~~v~~av---L~dK~~~r~ 141 (189)
T PLN02238 100 VLLVEDIVDTGNTLSALVAHLEAKGAASVSVCA---LLDKRARRK 141 (189)
T ss_pred EEEEecccchHHHHHHHHHHHHhCCCCEEEEEE---EEECCcccc
Confidence 999999999999999999999999999999998 778875444
No 40
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=99.45 E-value=9.4e-13 Score=117.92 Aligned_cols=105 Identities=22% Similarity=0.242 Sum_probs=79.7
Q ss_pred HHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHc----CCc--EEEEEEe--ecCC---CceEE---EEeecCCCC
Q psy17482 183 EPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRL----NVE--FALIHKE--RKKA---NEVAS---MVLVGDVKD 248 (353)
Q Consensus 183 ~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~L----g~~--~~~l~K~--R~~~---~~v~~---~~~~gdv~G 248 (353)
...||+++.+.+.+.+++++++++.||+.+|..+++.| +.+ +.+++.. |... +.... ..+.++++|
T Consensus 16 i~~la~~i~~~~~~~~~~viv~il~gG~~~a~~La~~L~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~l~~~v~g 95 (176)
T PRK05205 16 LTRIAHEIIERNKGLDNLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGELDITLYRDDLTKKGLHPQVKPTDIPFDIEG 95 (176)
T ss_pred HHHHHHHHHHHcCCCCCeEEEEEccCCHHHHHHHHHHHHHHcCCCCccceEEEEEeecCccccCcccccccccCCCCCCC
Confidence 56788888765433367899999999999999999999 543 4555443 3221 11111 234568999
Q ss_pred CEEEEEecccCChHHHHHHHHHHHhcC-CCEEEEEEEeccCCh
Q psy17482 249 RVAILVDDMADTCGTICHAAEKLMEAG-ATKVYAILTHGIFSG 290 (353)
Q Consensus 249 k~VlIVDDII~TG~Tl~~aa~~Lk~~G-A~~V~~~~tHglfs~ 290 (353)
|+|||||||+|||+|+.++++.|++.| +++|.+++ ++.+
T Consensus 96 r~VLIVDDIidTG~Tl~~~~~~L~~~G~~~~v~~av---L~~K 135 (176)
T PRK05205 96 KRVILVDDVLYTGRTIRAALDALFDYGRPARVQLAV---LVDR 135 (176)
T ss_pred CEEEEEecccCcHHHHHHHHHHHHhcCCCcEEEEEE---EEEC
Confidence 999999999999999999999999999 78899888 5555
No 41
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=99.44 E-value=1.1e-12 Score=118.79 Aligned_cols=154 Identities=16% Similarity=0.139 Sum_probs=99.1
Q ss_pred EEEEEcCChhHHhcccCc-cccccccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeecCCCc
Q psy17482 158 HIITMDLHASQIQGFFDI-PVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANE 236 (353)
Q Consensus 158 ~VitvDlHs~~~~~~F~i-p~~~l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~ 236 (353)
+++.-.+|+.....|+++ +.-.-.....+++.+.+.. +.+.++|++|+.||+++|..+|..++.|+.+++|.|.....
T Consensus 11 ~~~~~~~~~~~~~~~~D~~~~l~P~~l~~~~~~l~~~~-~~~~D~Ivg~e~~Gi~lA~~vA~~l~~p~~~~rk~~~~~~~ 89 (187)
T PRK12560 11 RVVNSGKALTTVNEFTDQLPALRPKVLKETAKEIIKYI-DKDIDKIVTEEDKGAPLATPVSLLSGKPLAMARWYPYSLSE 89 (187)
T ss_pred CccCCCCCCCcceeEEeChhhcCHHHHHHHHHHHHHHh-CCCCCEEEEEccccHHHHHHHHHhhCCCEEEeccCCCcccc
Confidence 555555666554444442 1111111223344444443 34567999999999999999999999999998886643221
Q ss_pred ------------eE-EEEeecCCCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHh-hcC--
Q psy17482 237 ------------VA-SMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRIN-NAC-- 300 (353)
Q Consensus 237 ------------v~-~~~~~gdv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~-~s~-- 300 (353)
.+ .+...+..+|++|+||||+++||+|+.++++.|+++||..+.+++.--.-..++.+.+. +.+
T Consensus 90 ~~~~~~~~~~~~~eg~~~~~~~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~vv~v~~vvd~~~~~g~~~l~~~~gv~ 169 (187)
T PRK12560 90 LNYNVVEIGSEYFEGVVYLNGIEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVSDVICVIEKTQNNGRKKLFTQTGIN 169 (187)
T ss_pred eeEEeeeeeccceeeeeEccCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEEecccchHHHHhhccCCc
Confidence 11 12223456899999999999999999999999999999988887732222224566663 233
Q ss_pred CCEEEEecCCCC
Q psy17482 301 FEAVVVTNTIPQ 312 (353)
Q Consensus 301 id~ii~TnTi~~ 312 (353)
+..++..+..++
T Consensus 170 v~sl~~~~~~~~ 181 (187)
T PRK12560 170 VKSLVKIDVKPH 181 (187)
T ss_pred EEEEEEEEEecC
Confidence 445555554443
No 42
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=99.44 E-value=1.7e-12 Score=115.54 Aligned_cols=101 Identities=22% Similarity=0.230 Sum_probs=76.8
Q ss_pred CCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeecCCCce-----------EEEEee--cCCCCCEEEEEecccCChHHH
Q psy17482 198 KNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEV-----------ASMVLV--GDVKDRVAILVDDMADTCGTI 264 (353)
Q Consensus 198 ~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~v-----------~~~~~~--gdv~Gk~VlIVDDII~TG~Tl 264 (353)
+.++|++|+.||+.+|..+++.+++|+..++|.+...... ..+.+. ...+||+|||||||++||+|+
T Consensus 46 ~~d~ivgi~~~G~~~A~~la~~L~~~~~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDIitTG~Tl 125 (169)
T TIGR01090 46 NIDYIVGPEARGFIFGAALAYKLGVGFVPVRKPGKLPGETISASYDLEYGKDQLEIHKDAIKPGQRVLIVDDLLATGGTA 125 (169)
T ss_pred CCCEEEeehhccHHHHHHHHHHHCCCEEEEEeCCCCCCceeeeEEeeccCceEEEEehhhcCCcCEEEEEeccccchHHH
Confidence 4579999999999999999999999987776654321100 011121 235899999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhh
Q psy17482 265 CHAAEKLMEAGATKVYAILTHGIFSGPAINRINN 298 (353)
Q Consensus 265 ~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~ 298 (353)
.++++.|+++||+.|.+++.-..-..++.+.+.+
T Consensus 126 ~~a~~~L~~~Ga~~v~~~~l~~~~~~~g~~~i~~ 159 (169)
T TIGR01090 126 EATDELIRKLGGEVVEAAFLIELKDLNGRAKLEP 159 (169)
T ss_pred HHHHHHHHHcCCEEEEEEEEEEccccChHHHhcc
Confidence 9999999999999988888544433356777754
No 43
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=99.39 E-value=8.4e-13 Score=119.54 Aligned_cols=129 Identities=20% Similarity=0.239 Sum_probs=83.8
Q ss_pred cccccCCCCcchHHHHHHHHHH----c---CCCEEEEEcCChhHH-hcccCccccccccHHHHHHHHHhhCCCCCCeEEE
Q psy17482 132 NEWKFRSRAPISAKLVANMLSV----A---GADHIITMDLHASQI-QGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIV 203 (353)
Q Consensus 132 ~~~kf~~~e~isak~vA~lL~~----~---g~d~VitvDlHs~~~-~~~F~ip~~~l~a~~~La~~i~~~~~~~~~~vvV 203 (353)
++||| .|+.--++.+|++|.. . ..|.|++|++|..+. ++.|| ++..+++.+........
T Consensus 50 ~~~K~-~~~~~l~~~l~~~l~~~~~~~~~~~~~~ivpVP~~~~r~~~RGfn-------q~~~la~~l~~~~~~~~----- 116 (190)
T TIGR00201 50 SRFKF-RGQAEIIRALASLLSLTVSKAYRDLPDVIVPVPLSKEREWRRGFN-------QADLLAQCLSRWLFNYH----- 116 (190)
T ss_pred HHhcc-CCChHHHHHHHHHHHHHHHhhccCCCCEEEeCCCCHHHHHHhCCC-------HHHHHHHHHHHHhCCCc-----
Confidence 37999 6666677888877643 1 247899999998754 56687 57778888765421001
Q ss_pred ecCCCchhhHHHHHHHcCCcEEEEEEeecCCCceEEEEeec-CCCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEE
Q psy17482 204 SPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVG-DVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAI 282 (353)
Q Consensus 204 spd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~v~~~~~~g-dv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~ 282 (353)
..+.+.+. ..+-++. .++|..+ ....+.+.. +++||+|+|||||+|||.|+.++++.|+++||.+|+++
T Consensus 117 ----~~l~r~~~-~~Q~~l~----~~~R~~n-~~~~f~~~~~~~~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~ 186 (190)
T TIGR00201 117 ----NIVIRLNN-ETQSKLK----ATLRFLN-LENAFDLKNNSFQGRNIVLVDDVVTTGATLHEIARLLLELGAASVQVW 186 (190)
T ss_pred ----ceEEEecc-cccccCC----HHHHHHH-HhCcEEccCCCCCCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEE
Confidence 11222222 2222221 1122110 011223333 48899999999999999999999999999999999998
Q ss_pred E
Q psy17482 283 L 283 (353)
Q Consensus 283 ~ 283 (353)
+
T Consensus 187 ~ 187 (190)
T TIGR00201 187 T 187 (190)
T ss_pred E
Confidence 7
No 44
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=99.39 E-value=3.9e-12 Score=113.71 Aligned_cols=97 Identities=22% Similarity=0.313 Sum_probs=78.0
Q ss_pred CCeEEEecCCCchhhHHHHHHHcCCc-----EEEEEEeecCCCceEEEEeecCC-CCCEEEEEecccCChHHHHHHHHHH
Q psy17482 198 KNSIIVSPDAGGAKRVTSIADRLNVE-----FALIHKERKKANEVASMVLVGDV-KDRVAILVDDMADTCGTICHAAEKL 271 (353)
Q Consensus 198 ~~~vvVspd~Gg~~ra~~la~~Lg~~-----~~~l~K~R~~~~~v~~~~~~gdv-~Gk~VlIVDDII~TG~Tl~~aa~~L 271 (353)
+.++|++|+.||+++|..+|..++.| +.+.+|.+...+... ...+.+ +|++|+||||+++||+|+.++++.|
T Consensus 54 ~~d~Ivg~~~gG~~~A~~la~~l~~~~~~~~~~~~rk~~k~~g~~~--~~~g~~~~g~~VlIVDDvi~TG~Tl~~a~~~l 131 (173)
T TIGR00336 54 EFDVIAGPALGGIPIATAVSVKLAKPGGDIPLCFNRKEAKDHGEGG--NIEGELLEGDKVVVVEDVITTGTSILEAVEII 131 (173)
T ss_pred CCCEEEccccChHHHHHHHHHHhcCcCCCceEEEEcCCcccCCCCC--ceecCCCCCCEEEEEeccccChHHHHHHHHHH
Confidence 56799999999999999999999999 888887765433221 233444 7999999999999999999999999
Q ss_pred HhcCCCEEEEEEEeccCCh---hHHHHHhhc
Q psy17482 272 MEAGATKVYAILTHGIFSG---PAINRINNA 299 (353)
Q Consensus 272 k~~GA~~V~~~~tHglfs~---~a~~~l~~s 299 (353)
+++|++.+.++| ++.. ++.+++.+.
T Consensus 132 ~~~Ga~v~~~~v---lvdr~~~~~~~~l~~~ 159 (173)
T TIGR00336 132 QAAGGQVAGVII---AVDRQERSAGQEFEKE 159 (173)
T ss_pred HHcCCeEEEEEE---EEecCchhHHHHHHHh
Confidence 999999888887 4443 457777643
No 45
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=99.38 E-value=9.8e-12 Score=112.55 Aligned_cols=152 Identities=19% Similarity=0.259 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHcCC----CEEEEEcCChhHHhcccCcccccccc----HHHHHHHHHhhCCCCCCeEEEecCCCchhhHH
Q psy17482 143 SAKLVANMLSVAGA----DHIITMDLHASQIQGFFDIPVDNLYA----EPAVLKWIKENIPEWKNSIIVSPDAGGAKRVT 214 (353)
Q Consensus 143 sak~vA~lL~~~g~----d~VitvDlHs~~~~~~F~ip~~~l~a----~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~ 214 (353)
..+.+.++|...|+ ++.++--.|++. |++.. .+.. ...+++.+.+.+.+.+-..|++|..||++.|.
T Consensus 15 ~~~~l~~~l~~~ga~~~g~F~L~SG~~s~~---yiD~~--~~~~~p~~~~~i~~~la~~~~~~~~d~I~g~~~~GiplA~ 89 (187)
T PRK13810 15 QKQELIAALKACGAVRYGDFTLSSGKKSKY---YIDIK--KASTDPKTLKLIARQAALRIKEMDVDTVAGVELGGVPLAT 89 (187)
T ss_pred HHHHHHHHHHHCCCeEecCEEEcCCCcCCE---EEECc--hhcCCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHH
Confidence 44557777777765 344444444432 22321 1111 22333333333333345789999999999999
Q ss_pred HHHHHcCCcEEEEEEeecCCCceEEEEeecCC-CCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHH
Q psy17482 215 SIADRLNVEFALIHKERKKANEVASMVLVGDV-KDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAI 293 (353)
Q Consensus 215 ~la~~Lg~~~~~l~K~R~~~~~v~~~~~~gdv-~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~ 293 (353)
.+|.++|+|+.+++|.....++-. ...+.+ +|++|+||||+++||+|+.++++.++++|+.-+.+++.-..- .++.
T Consensus 90 ~vA~~l~~p~v~vRK~~k~~g~~~--~~~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v~vlvdr~-~g~~ 166 (187)
T PRK13810 90 AVSLETGLPLLIVRKSVKDYGTGS--RFVGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVITVVDRE-EGAE 166 (187)
T ss_pred HHHHHhCCCEEEEecCCCccCCCc--eEEccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEEEEEEECC-cChH
Confidence 999999999999988765433321 234444 799999999999999999999999999999987777733222 3567
Q ss_pred HHHhhcCCC
Q psy17482 294 NRINNACFE 302 (353)
Q Consensus 294 ~~l~~s~id 302 (353)
++|.+.+++
T Consensus 167 ~~l~~~gi~ 175 (187)
T PRK13810 167 ENLKEADVE 175 (187)
T ss_pred HHHHHcCCc
Confidence 888765543
No 46
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=99.34 E-value=2.5e-11 Score=110.07 Aligned_cols=127 Identities=11% Similarity=0.091 Sum_probs=88.5
Q ss_pred HHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeecCC--Cc-e------------EEEEeec-CC-CC
Q psy17482 186 VLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKA--NE-V------------ASMVLVG-DV-KD 248 (353)
Q Consensus 186 La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~--~~-v------------~~~~~~g-dv-~G 248 (353)
+++.+.+.+.+.+.++|++|+.+|+++|..+|.++|.|+.+++|..+.+ ++ . ..+.+.. .+ +|
T Consensus 38 i~~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK~~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~i~~G 117 (189)
T PRK09219 38 IGKEFARRFKDEGITKILTIEASGIAPAVMAALALGVPVVFAKKKKSLTLTDDVYTATVYSFTKQVTSTVSVSKKFLSEG 117 (189)
T ss_pred HHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEEECCCCCCCCceEEEEEeeeccCceEEEEEEhhhCCCC
Confidence 3344433333334568999999999999999999999999999876442 11 1 1112222 23 79
Q ss_pred CEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcC--CCEEEEecCCCC
Q psy17482 249 RVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNAC--FEAVVVTNTIPQ 312 (353)
Q Consensus 249 k~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~--id~ii~TnTi~~ 312 (353)
++|+||||+++||+|+.++++.++++||+-+.+++.--.-..++.+++.+.+ +..++..+.++.
T Consensus 118 ~rVlIVDDviaTGgT~~a~~~lv~~aGa~vvgv~~lvd~~~~~g~~~l~~~g~~~~sl~~~~~~~~ 183 (189)
T PRK09219 118 DRVLIIDDFLANGQAALGLIDIIEQAGAKVAGIGIVIEKSFQDGRKLLEEKGYRVESLARIASLEN 183 (189)
T ss_pred CEEEEEeehhhcChHHHHHHHHHHHCCCEEEEEEEEEEccCccHHHHHHhcCCcEEEEEEeeeccC
Confidence 9999999999999999999999999999987777621111124677776544 445555555544
No 47
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=99.34 E-value=1.9e-11 Score=111.11 Aligned_cols=128 Identities=12% Similarity=0.099 Sum_probs=89.9
Q ss_pred HHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeecCCC-----c----------eEEEEeecC-C
Q psy17482 183 EPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKAN-----E----------VASMVLVGD-V 246 (353)
Q Consensus 183 ~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~-----~----------v~~~~~~gd-v 246 (353)
...+++.+.+.+.+.+..+|++|+.+|+++|..+|..||+|+.+++|..+.+. + .....+.++ +
T Consensus 35 l~~v~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~vRK~~k~~~~~~~~~~~~~s~~~~~~~~l~i~~~~l 114 (191)
T TIGR01744 35 MQEVGEEFARRFADDGITKIVTIEASGIAPAIMTGLKLGVPVVFARKKKPLTLTDNLLTASVHSFTKQTTSTVAVSGEFL 114 (191)
T ss_pred HHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEEeCCCCCCCCcceEEEEEEeecCccEEEEEEHHhC
Confidence 34445555555433355789999999999999999999999999998754322 1 011123342 4
Q ss_pred -CCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcC--CCEEEEecCC
Q psy17482 247 -KDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNAC--FEAVVVTNTI 310 (353)
Q Consensus 247 -~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~--id~ii~TnTi 310 (353)
+|++|+||||+++||+|+.++++.++++||.-+.+++.--.-..++.++|.+.+ +..++.-+++
T Consensus 115 ~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~~lvd~~~~~g~~~l~~~gvpv~sL~~~~~l 181 (191)
T TIGR01744 115 SDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGIVIEKSFQNGRQELVELGYRVESLARIQSL 181 (191)
T ss_pred CCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEEEEEEecCccHHHHHHhcCCcEEEEEEEeeE
Confidence 799999999999999999999999999999988877732221124677776544 3344444444
No 48
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.33 E-value=6.8e-12 Score=115.49 Aligned_cols=109 Identities=16% Similarity=0.184 Sum_probs=83.8
Q ss_pred cHHHHHHHHHhhCCC-----CCCeEEEecCCCchhhHHHHHHHcC---Cc--EEEEEEeecC-----CCceEEE-EeecC
Q psy17482 182 AEPAVLKWIKENIPE-----WKNSIIVSPDAGGAKRVTSIADRLN---VE--FALIHKERKK-----ANEVASM-VLVGD 245 (353)
Q Consensus 182 a~~~La~~i~~~~~~-----~~~~vvVspd~Gg~~ra~~la~~Lg---~~--~~~l~K~R~~-----~~~v~~~-~~~gd 245 (353)
....||++|.+.+.+ .+++++++..+||+.+|..|++.|+ .| +.+++-.+.. .+++... .+..+
T Consensus 36 ~i~~LA~~I~~~~~~~~~~~~~~~vivgVlkGg~~fa~dL~r~L~~~~~~~~vdfi~vssY~~~~~s~g~~~i~~~~~~~ 115 (211)
T PTZ00271 36 ATAKCAKKIAEDYRSFKLTTENPLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICASSYGTGVETSGQVRMLLDVRDS 115 (211)
T ss_pred HHHHHHHHHHHHhhhccccCCCCeEEEEEcCCCHHHHHHHHHHhcccCCCeeEEEEEEEecCCCCcccCceEEecCCCCC
Confidence 356788888776531 2467899999999999999999996 55 4455433322 1233322 34558
Q ss_pred CCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHH
Q psy17482 246 VKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAI 293 (353)
Q Consensus 246 v~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~ 293 (353)
++||+|||||||+|||.||.++.+.|++.|+++|.+++ ++.++..
T Consensus 116 i~gk~VLIVDDIvDTG~TL~~v~~~l~~~~p~svk~av---L~dK~~~ 160 (211)
T PTZ00271 116 VENRHILIVEDIVDSAITLQYLMRFMLAKKPASLKTVV---LLDKPSG 160 (211)
T ss_pred CCCCEEEEEecccCCHHHHHHHHHHHHhcCCCEEEEEE---EEEcccC
Confidence 99999999999999999999999999999999999998 7777544
No 49
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=99.33 E-value=3.6e-12 Score=118.60 Aligned_cols=129 Identities=26% Similarity=0.378 Sum_probs=88.8
Q ss_pred cccccCCCCcchHHHHHHHHHHc------CCCEEEEEcCChhH-HhcccCccccccccHHHHHHHHHhhCCCCCCeEEEe
Q psy17482 132 NEWKFRSRAPISAKLVANMLSVA------GADHIITMDLHASQ-IQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVS 204 (353)
Q Consensus 132 ~~~kf~~~e~isak~vA~lL~~~------g~d~VitvDlHs~~-~~~~F~ip~~~l~a~~~La~~i~~~~~~~~~~vvVs 204 (353)
.++|| .++..-++.+|++|... -.|.|++|++|..+ .+..|| ++..+++.+...+ ..+.
T Consensus 83 ~~~Kf-~~~~~l~~~la~~l~~~~~~~~~~~~~iVpVPls~~r~~~RGFN-------Q~~~la~~l~~~~---~~~~--- 148 (225)
T COG1040 83 SQLKF-QGDLDLAKLLARLLAKALDDFLEKPDLIVPVPLSPSRLLERGFN-------QSELLARALARRL---GKPI--- 148 (225)
T ss_pred HHhhh-CCchhHHHHHHHHHHHHHhhccccCCeEEEecCCHHHHHHcCCC-------HHHHHHHHHHHHh---CchH---
Confidence 36899 67777888888887653 24699999999765 477898 6788888886653 1121
Q ss_pred cCCCchhhHHHHHHHcCCcEEEEEEeecCCCceEEEEeecCCCC-CEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEE
Q psy17482 205 PDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKD-RVAILVDDMADTCGTICHAAEKLMEAGATKVYAIL 283 (353)
Q Consensus 205 pd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~v~~~~~~gdv~G-k~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~ 283 (353)
...+.+.-..+.++. .++|..+ ....+.+.+..+. |+|+|||||+|||.|+.++++.|++.||++|.+++
T Consensus 149 ----~~~r~k~~~~q~~l~----~~~rr~n-l~~aF~~~~~~~~~~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~~v~~~~ 219 (225)
T COG1040 149 ----ALRRVKDTSPQQGLK----ALERRRN-LKGAFRLKKGIEEPKNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVLT 219 (225)
T ss_pred ----HHHHHhccccccccc----hHHHHHh-ccCCeecCCCCCCCCeEEEEecccccHHHHHHHHHHHHHcCCceEEEEE
Confidence 223333333333322 1222221 1113345555555 99999999999999999999999999999999987
No 50
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.32 E-value=1.5e-11 Score=115.22 Aligned_cols=107 Identities=16% Similarity=0.144 Sum_probs=83.0
Q ss_pred cHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcC---------Cc--E---EEEEEeec----CCCceEEE-Ee
Q psy17482 182 AEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLN---------VE--F---ALIHKERK----KANEVASM-VL 242 (353)
Q Consensus 182 a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg---------~~--~---~~l~K~R~----~~~~v~~~-~~ 242 (353)
....||.+|.+.+ +.+++++++..+||+.++..|.+.|+ +| . .+++-.+. +.+++... ..
T Consensus 66 rI~~LA~~I~~dy-~~~~~vilgILkGg~~FaadL~~~L~~~~~~~~~~~~~~~~~~dfi~vsSY~~~~s~g~v~i~~~~ 144 (241)
T PTZ00149 66 RVEKLAYDIKQVY-GNEELHILCILKGSRGFFSALVDYLNRIHNYSSTESPKPPYQEHYVRVKSYCNDESTGKLEIVSDD 144 (241)
T ss_pred HHHHHHHHHHHHc-CCCCeEEEEECCCCHHHHHHHHHHHhhhhhccccccCcccccccEEEEEEccCCCcCCceEEeccc
Confidence 3677888998876 35789999999999999999999887 22 2 44443222 22333322 23
Q ss_pred ecCCCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhH
Q psy17482 243 VGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPA 292 (353)
Q Consensus 243 ~gdv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a 292 (353)
..+++||+|||||||+|||.|+.++++.|++.|+++|.++| ++.++.
T Consensus 145 ~~~l~gk~VLIVDDIidTG~Tl~~~~~~L~~~g~~~V~va~---L~~K~~ 191 (241)
T PTZ00149 145 LSCLKDKHVLIVEDIIDTGNTLVKFCEYLKKFEPKTIRIAT---LFEKRT 191 (241)
T ss_pred ccccCCCEEEEEEeEeChHHHHHHHHHHHHhcCCCEEEEEE---EEecCc
Confidence 34789999999999999999999999999999999999998 776654
No 51
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=99.32 E-value=3.2e-11 Score=110.82 Aligned_cols=113 Identities=20% Similarity=0.259 Sum_probs=93.2
Q ss_pred CCeEEEecCCCchhhHHHHHHHcC-CcEEEEEEeecCC-CceE--EEEeecCCCCCEEEEEecccCChHHHHHHHHHHHh
Q psy17482 198 KNSIIVSPDAGGAKRVTSIADRLN-VEFALIHKERKKA-NEVA--SMVLVGDVKDRVAILVDDMADTCGTICHAAEKLME 273 (353)
Q Consensus 198 ~~~vvVspd~Gg~~ra~~la~~Lg-~~~~~l~K~R~~~-~~v~--~~~~~gdv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~ 273 (353)
++.++|+...||..++..+.+.+. .++..+.++|... .+.. ...+..+++||+|||||||++||+|+..+++.|++
T Consensus 68 ~~i~~V~ILrgg~~~~~~l~~~l~~~~v~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ai~~L~~ 147 (207)
T TIGR01091 68 KKIVLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRNEETLKPVPYYSKLPEDIDERTVIVLDPMLATGGTMIAALDLLKK 147 (207)
T ss_pred CcEEEEEEeCCcHHHHHHHHHhCCcCceeEEEEEeCCCCCCCEEEEecCCCCCCCCEEEEECCCccchHHHHHHHHHHHH
Confidence 468999999999999999999997 5677777777532 1211 22356689999999999999999999999999999
Q ss_pred cCCCEEEEEEEeccCChhHHHHHhhcCCCEEEEecCCCC
Q psy17482 274 AGATKVYAILTHGIFSGPAINRINNACFEAVVVTNTIPQ 312 (353)
Q Consensus 274 ~GA~~V~~~~tHglfs~~a~~~l~~s~id~ii~TnTi~~ 312 (353)
+|+++|.+++. +.++.++++|.+...+--++|-.+..
T Consensus 148 ~G~~~I~v~~l--l~~~~gl~~l~~~~p~v~i~~~~id~ 184 (207)
T TIGR01091 148 RGAKKIKVLSI--VAAPEGIEAVEKAHPDVDIYTAAIDE 184 (207)
T ss_pred cCCCEEEEEEE--ecCHHHHHHHHHHCCCCEEEEEEECC
Confidence 99999999986 88999999998776666666777754
No 52
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=99.31 E-value=1.3e-10 Score=110.40 Aligned_cols=124 Identities=16% Similarity=0.223 Sum_probs=89.2
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeecC-CC-------------ceEEEEeec-CC-CC
Q psy17482 185 AVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKK-AN-------------EVASMVLVG-DV-KD 248 (353)
Q Consensus 185 ~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~-~~-------------~v~~~~~~g-dv-~G 248 (353)
.+++.+.+.+.+.+-++|++++.+|+++|..+|..||+|+.+++|..+. .+ .++.+.+.. .+ +|
T Consensus 115 ~ig~~la~~~~~~~iD~VvgvetkGIpLA~avA~~L~vp~vivRK~~K~t~g~~vs~nY~sgs~~~ie~m~l~k~~l~~G 194 (268)
T TIGR01743 115 KIGKILASVFAEREIDAVMTVATKGIPLAYAVASVLNVPLVIVRKDSKVTEGSTVSINYVSGSSNRIQTMSLAKRSLKTG 194 (268)
T ss_pred HHHHHHHHHhcCCCCCEEEEEccchHHHHHHHHHHHCCCEEEEEECCCCCCCCcEEEEEEcccCccceEEEEehhhCCCc
Confidence 3344444433333457999999999999999999999999999887543 11 122233322 33 79
Q ss_pred CEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCCh-hHHHHHhhcCCCEEEEecCCCC
Q psy17482 249 RVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSG-PAINRINNACFEAVVVTNTIPQ 312 (353)
Q Consensus 249 k~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~-~a~~~l~~s~id~ii~TnTi~~ 312 (353)
++|+||||+++||+|+.++.+.++++||.-+.+++. +.. +..+++.. .+-.++..+.+..
T Consensus 195 ~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~vl---ve~~~~~~~l~~-~~~SL~~~~~~~~ 255 (268)
T TIGR01743 195 SKVLIIDDFMKAGGTINGMINLLDEFDAEVAGIGVL---IDNEGVDEKLVD-DYMSLLTLSNINE 255 (268)
T ss_pred CEEEEEeeecccCHHHHHHHHHHHHCCCEEEEEEEE---EECCCChHHcCC-CceEEEEEeeccc
Confidence 999999999999999999999999999998777763 222 34566643 5666776666654
No 53
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.30 E-value=8.9e-11 Score=106.93 Aligned_cols=100 Identities=27% Similarity=0.366 Sum_probs=77.1
Q ss_pred CCeEEEecCCCchhhHHHHHHHcC-Cc-EEEEEEeecCCCceEEEEee-cCCCCCEEEEEecccCChHHHHHHHHHHHhc
Q psy17482 198 KNSIIVSPDAGGAKRVTSIADRLN-VE-FALIHKERKKANEVASMVLV-GDVKDRVAILVDDMADTCGTICHAAEKLMEA 274 (353)
Q Consensus 198 ~~~vvVspd~Gg~~ra~~la~~Lg-~~-~~~l~K~R~~~~~v~~~~~~-gdv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~ 274 (353)
+..+|++|..||++.|..+|.+++ .+ +.+.+|+.+..|... .+. +..+|++|+||||++|||+++.++++.|+++
T Consensus 61 ~~d~v~G~a~ggiP~A~~~a~~l~~~~~~~~~Rke~K~hG~~~--~ieG~~~~G~kVvvVEDViTTG~Si~eai~~l~~~ 138 (201)
T COG0461 61 EFDVVAGPALGGIPLAAATALALAHLPPMAYVRKEAKDHGTGG--LIEGGEVKGEKVVVVEDVITTGGSILEAVEALREA 138 (201)
T ss_pred CCcEEEeccccchHHHHHHHHHhccCCcEEEEeceeccCCCcc--eeEecCCCCCEEEEEEecccCCHhHHHHHHHHHHc
Confidence 567999999999999999999983 22 667787766555431 222 2348999999999999999999999999999
Q ss_pred CCCEEEEEEEeccCCh--hHHHHHhhcCCC
Q psy17482 275 GATKVYAILTHGIFSG--PAINRINNACFE 302 (353)
Q Consensus 275 GA~~V~~~~tHglfs~--~a~~~l~~s~id 302 (353)
|+..+.++| +++. ++.+.+.+.++.
T Consensus 139 G~~V~gv~~---ivDR~~~~~~~~~~~g~~ 165 (201)
T COG0461 139 GAEVVGVAV---IVDRQSGAKEVLKEYGVK 165 (201)
T ss_pred CCeEEEEEE---EEecchhHHHHHHhcCCc
Confidence 999877776 5554 355666655544
No 54
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=99.28 E-value=1.2e-11 Score=108.77 Aligned_cols=106 Identities=25% Similarity=0.378 Sum_probs=79.5
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEEEE--EeecCCCce--EEE-EeecCCCCCEEEEEeccc
Q psy17482 184 PAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIH--KERKKANEV--ASM-VLVGDVKDRVAILVDDMA 258 (353)
Q Consensus 184 ~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~--K~R~~~~~v--~~~-~~~gdv~Gk~VlIVDDII 258 (353)
..+++-+.+.. +.+-++||+....|+++|..+|..||.++.+.+ |.|...+.- ..+ .-.+.|+||+|+||||++
T Consensus 73 ~am~Dm~m~~~-~~evDvVvGIa~sGvPlAtmvA~elg~elaiY~PrK~~~de~~~~~G~iS~NFa~V~gK~cvIVDDvi 151 (203)
T COG0856 73 EAMADMIMEKV-SFEVDVVVGIAISGVPLATMVAYELGKELAIYHPRKHRKDEGAGKGGSISSNFASVEGKRCVIVDDVI 151 (203)
T ss_pred HHHHHHHHHhc-cceeEEEEEEeecCccHHHHHHHHhCCceEEEecccccccccCCcCceeecccccccCceEEEEeccc
Confidence 44566344433 356789999999999999999999999998776 333322211 111 123579999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHH
Q psy17482 259 DTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAI 293 (353)
Q Consensus 259 ~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~ 293 (353)
+||.|+.++++.|++.|++.+.+.+ +.++...
T Consensus 152 ttG~Ti~E~Ie~lke~g~kpv~v~V---L~dK~G~ 183 (203)
T COG0856 152 TTGSTIKETIEQLKEEGGKPVLVVV---LADKKGV 183 (203)
T ss_pred ccChhHHHHHHHHHHcCCCcEEEEE---EEccCCc
Confidence 9999999999999999999887776 5555433
No 55
>PRK09213 pur operon repressor; Provisional
Probab=99.23 E-value=5.2e-10 Score=106.56 Aligned_cols=125 Identities=18% Similarity=0.245 Sum_probs=87.9
Q ss_pred HHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeecC-CC-------------ceEEEEeec-CC-CCC
Q psy17482 186 VLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKK-AN-------------EVASMVLVG-DV-KDR 249 (353)
Q Consensus 186 La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~-~~-------------~v~~~~~~g-dv-~Gk 249 (353)
+++.+.+.+.+.+.++|++|+.+|+++|..+|..||+|+.+++|..+. .+ .++.+.+.. .+ +|+
T Consensus 118 i~~~la~~~~~~~iD~Vvtvet~GIplA~~vA~~L~vp~vivRK~~K~~~G~~vs~~y~sgs~~~ie~m~L~~~~l~~G~ 197 (271)
T PRK09213 118 IGRIIASAFADKKIDAVMTVETKGIPLAYAVANYLNVPFVIVRRDSKVTEGSTVSINYVSGSSKRIETMSLSKRSLKEGS 197 (271)
T ss_pred HHHHHHHHhcccCCCEEEEEccccHHHHHHHHHHHCCCEEEEEECCCCCCCCcEEEEEEecccccceEEEEeHhhcCCcC
Confidence 334444433333456999999999999999999999999999886542 12 112222221 34 699
Q ss_pred EEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcCCCEEEEecCCCCC
Q psy17482 250 VAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTNTIPQD 313 (353)
Q Consensus 250 ~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~id~ii~TnTi~~~ 313 (353)
+|+||||+++||+|+.++++.++++||.-+.+++.-.. .+..+++. ..+..++..+.+...
T Consensus 198 rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~vlVd~--~~~~~~l~-~~~~SL~~~~~vd~~ 258 (271)
T PRK09213 198 RVLIVDDFMKAGGTINGMISLLKEFDAEVVGIGVLVET--KEPEERLV-DDYVSLLKLSEVDEK 258 (271)
T ss_pred EEEEEeeecccCHhHHHHHHHHHHCCCEEEEEEEEEEC--CCChhhcC-CceEEEEEEehhccc
Confidence 99999999999999999999999999998777763221 13345553 356667766666543
No 56
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=99.22 E-value=3e-10 Score=106.55 Aligned_cols=113 Identities=15% Similarity=0.192 Sum_probs=81.0
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeecCCC-------------ceEEEEee-cC-CCCC
Q psy17482 185 AVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKAN-------------EVASMVLV-GD-VKDR 249 (353)
Q Consensus 185 ~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~-------------~v~~~~~~-gd-v~Gk 249 (353)
.+++.+.+.+.+.+.++|++++.||+++|..+|..||.|+.+++|.+..+. .+..+.+. .. .+|+
T Consensus 98 ~v~~~la~~~~~~~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~Rk~~~~~~~~~v~~y~s~s~~~~~~~~l~~~~l~~G~ 177 (238)
T PRK08558 98 LIAPVVAERFMGLRVDVVLTAATDGIPLAVAIASYFGADLVYAKKSKETGVEKFYEEYQRLASGIEVTLYLPASALKKGD 177 (238)
T ss_pred HHHHHHHHHccCCCCCEEEEECcccHHHHHHHHHHHCcCEEEEEecCCCCCcceEEEeeccCCCceeEEEecHHHcCCcC
Confidence 344444444433345789999999999999999999999998887653211 11122222 22 4799
Q ss_pred EEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhh
Q psy17482 250 VAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINN 298 (353)
Q Consensus 250 ~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~ 298 (353)
+|+||||+++||+|+..+++.++++||+.+.+++.-..- ..+.+++.+
T Consensus 178 rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv~vlv~~~-~~~~~~l~~ 225 (238)
T PRK08558 178 RVLIVDDIIRSGETQRALLDLARQAGADVVGVFFLIAVG-EVGIDRARE 225 (238)
T ss_pred EEEEEecccccCHHHHHHHHHHHHcCCEEEEEEEEEecC-chHHHHHhH
Confidence 999999999999999999999999999988887732221 234666653
No 57
>PRK06031 phosphoribosyltransferase; Provisional
Probab=99.22 E-value=2.8e-10 Score=106.37 Aligned_cols=128 Identities=15% Similarity=0.144 Sum_probs=87.5
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCc-EEEEEEeecC---C------------CceEEEEee----
Q psy17482 184 PAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVE-FALIHKERKK---A------------NEVASMVLV---- 243 (353)
Q Consensus 184 ~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~-~~~l~K~R~~---~------------~~v~~~~~~---- 243 (353)
..+++.|.+.+.+.+..+|+++..+|+..|..+|.+||.+ +.-+.+.|+. . ++...+.+.
T Consensus 70 ~~la~~La~~~~~~~~DvIVgv~~~Gi~lA~~lA~~Lg~~~~vpl~~~rK~~~~~~l~~~~~sitt~~~~~~~~l~~~~~ 149 (233)
T PRK06031 70 DALAEHLAEKARAFDPDVVAGLPTLGLTLAAAVARKLGHTRYVPLGTSRKFWYRDELSVPLSSITTPDQGKRLYIDPRML 149 (233)
T ss_pred HHHHHHHHHHcccCCCcEEEEeccCCHHHHHHHHHHHCCCCceEEEEccccccccccccceeeeeccCccceEEeccccc
Confidence 3455666555433456799999999999999999999964 2222322211 0 111111222
Q ss_pred cCCCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcC---CCEEEEecCCCC
Q psy17482 244 GDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNAC---FEAVVVTNTIPQ 312 (353)
Q Consensus 244 gdv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~---id~ii~TnTi~~ 312 (353)
..++|++|+||||+++||+|+.++++.|+++|++.+.+++.- .-..++.++|.+.+ .+.|+..-.+|.
T Consensus 150 ~~~~GkrVLIVDDVitTG~Tl~aa~~lL~~~Ga~Vvgv~v~v-~~g~~~~~~l~~~~~~~~~~~~~~~~~p~ 220 (233)
T PRK06031 150 PLLEGRRVALIDDVISSGASIVAGLRLLAACGIEPAGIGAAM-LQSERWRESLAAAGPQWPARVVGVFATPI 220 (233)
T ss_pred ccCCCCEEEEEEeEccccHHHHHHHHHHHHcCCeEEEEEEEE-EccccHHHHHHhcCCCcccceEEEeeccc
Confidence 236899999999999999999999999999999876655521 22345677777655 577877777765
No 58
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=99.22 E-value=1.8e-10 Score=117.57 Aligned_cols=107 Identities=20% Similarity=0.221 Sum_probs=81.9
Q ss_pred HHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeecCCCceEEEEeecCC-CCCEEEEEecccCChHHHH
Q psy17482 187 LKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDV-KDRVAILVDDMADTCGTIC 265 (353)
Q Consensus 187 a~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~v~~~~~~gdv-~Gk~VlIVDDII~TG~Tl~ 265 (353)
++.+.+.+.+.+-..|++|..||+++|..+|.++|.|+.+.+|+.+..++.. .+.|.+ +|++|+||||+++||+|+.
T Consensus 333 ~~~la~~l~~~~~D~I~Gia~gGiPlAt~lA~~lg~p~v~vRKe~K~~G~~~--~ieG~~~~G~rVlIVDDViTTGgSi~ 410 (477)
T PRK05500 333 LSAYAEILKNLTFDRIAGIPYGSLPTATGLALHLHHPMIFPRKEVKAHGTRR--LIEGNFHPGETVVVVDDILITGKSVM 410 (477)
T ss_pred HHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEecCcCccCCCc--eEecCCCCcCEEEEEEeccccCHHHH
Confidence 3334333323345689999999999999999999999999988866555432 345555 7999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEEEEeccCC--hhHHHHHhh
Q psy17482 266 HAAEKLMEAGATKVYAILTHGIFS--GPAINRINN 298 (353)
Q Consensus 266 ~aa~~Lk~~GA~~V~~~~tHglfs--~~a~~~l~~ 298 (353)
++++.|+++|++.+.+++ ++. .++.++|++
T Consensus 411 eaie~l~~aG~~V~~v~v---lVDR~~g~~~~L~~ 442 (477)
T PRK05500 411 EGAEKLKSAGLNVRDIVV---FIDHEQGVKDKLQS 442 (477)
T ss_pred HHHHHHHHCCCEEEEEEE---EEECCcchHHHHHh
Confidence 999999999999877766 333 245666654
No 59
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.18 E-value=3.5e-11 Score=123.13 Aligned_cols=149 Identities=15% Similarity=0.216 Sum_probs=106.6
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEE-EEEeecC------CC------ceE-EEE-eecCCCC
Q psy17482 184 PAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFAL-IHKERKK------AN------EVA-SMV-LVGDVKD 248 (353)
Q Consensus 184 ~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~-l~K~R~~------~~------~v~-~~~-~~gdv~G 248 (353)
..++++|.+..+ .+.++||+....|...|..+|+.+|+|+.. +.|.|.. .+ .++ .+. ....++|
T Consensus 272 ~~lg~~La~~~~-~~~D~VvpVPnqa~~lA~~la~~lgip~~~~lvk~~~~~rt~~~~~q~~R~~~vr~~f~~~~~~~~g 350 (484)
T PRK07272 272 KRMGKRLAQEFP-HDADIVIGVPNSSLSAASGYAEESGLPYEMGLVKNQYVARTFIQPTQELREQGVRMKLSAVSGVVKG 350 (484)
T ss_pred HHHHHHHHhhcC-CCCCEEEEecHHHHHHHHHHHHHHCCCcccCeEEEccCCccccCCCHHHHHHHHhhCccccccccCC
Confidence 456666665543 234678888888999999999999999742 2233211 11 011 122 3457899
Q ss_pred CEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcCCCEEEEecCC-CCCCCCCCCCCeeEEeh
Q psy17482 249 RVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTNTI-PQDGHMKDCTKIRCIDV 327 (353)
Q Consensus 249 k~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~id~ii~TnTi-~~~~~~~~~~ki~~lsv 327 (353)
|+|+||||+++||.|+.++++.|+++||++|.++++||.+..+..--|..+..++++..+.- ....+....+-+.++++
T Consensus 351 k~vllVDDvittG~T~~~~~~~L~~~Ga~~v~~~~~~p~~~~~c~ygid~~~~~~lia~~~~~~ei~~~~~~dsl~~~~~ 430 (484)
T PRK07272 351 KRVVMVDDSIVRGTTSRRIVQLLKEAGAKEVHVAIASPELKYPCFYGIDIQTRRELISANHSVEEICDIIGADSLTYLSV 430 (484)
T ss_pred CEEEEEccccCchHHHHHHHHHHHhcCCcEEEEEEeCCccccChhhhccCcCHHHHHhcCCCHHHHHHHhCCCEEEEecH
Confidence 99999999999999999999999999999999999999999998887766666666654432 11111234677899999
Q ss_pred HHHHHH
Q psy17482 328 SMMFAE 333 (353)
Q Consensus 328 a~lla~ 333 (353)
..++.-
T Consensus 431 ~~l~~~ 436 (484)
T PRK07272 431 DGLIES 436 (484)
T ss_pred HHHHHH
Confidence 777543
No 60
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=99.17 E-value=5.4e-10 Score=100.58 Aligned_cols=87 Identities=30% Similarity=0.326 Sum_probs=71.3
Q ss_pred CCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeecCCCc-----------eEEEEeecC-C-CCCEEEEEecccCChHHH
Q psy17482 198 KNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANE-----------VASMVLVGD-V-KDRVAILVDDMADTCGTI 264 (353)
Q Consensus 198 ~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~-----------v~~~~~~gd-v-~Gk~VlIVDDII~TG~Tl 264 (353)
+-..|+++..+|+.+|..+|.+||+|+.+++|.+..+.+ .+.+.+..+ + +|++|+||||+++||+|+
T Consensus 53 ~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vRK~~kl~~~~~~~~~~~~~~~~~l~~~~~~l~~G~rVlIVDDllaTGgT~ 132 (179)
T COG0503 53 GIDKIVTIEARGIPLAAAVALELGVPFVPVRKKGKLPEESVVETYYLEYGSETLELHKDALKPGDRVLIVDDLLATGGTA 132 (179)
T ss_pred CCCEEEEEccccchhHHHHHHHhCCCEEEEEecCCCCCcceeEEEEEeccceEEEEEhhhCCCCCEEEEEecchhcChHH
Confidence 456899999999999999999999999999987654321 112223222 3 699999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEEEE
Q psy17482 265 CHAAEKLMEAGATKVYAILT 284 (353)
Q Consensus 265 ~~aa~~Lk~~GA~~V~~~~t 284 (353)
.+..+.+.++|+.-+.+++.
T Consensus 133 ~a~~~Ll~~~ga~vvg~~~~ 152 (179)
T COG0503 133 LALIELLEQAGAEVVGAAFV 152 (179)
T ss_pred HHHHHHHHHCCCEEEEEEEE
Confidence 99999999999998888774
No 61
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.15 E-value=3.2e-10 Score=116.23 Aligned_cols=141 Identities=17% Similarity=0.230 Sum_probs=98.9
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEE-EEEeecC------------CCceEEE-Ee-ecCCCC
Q psy17482 184 PAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFAL-IHKERKK------------ANEVASM-VL-VGDVKD 248 (353)
Q Consensus 184 ~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~-l~K~R~~------------~~~v~~~-~~-~gdv~G 248 (353)
..+++.|.+..+ .+.++||++..+|...|..+++.+|+|+.. +.|.|.. ...++.. .. ...++|
T Consensus 282 ~~~g~~La~~~~-~~~D~Vv~VP~sg~~~A~~la~~lgip~~~~lir~~y~grt~i~~~q~~r~~~v~~k~~~~~~~~~g 360 (479)
T PRK09123 282 KNIGRELARESP-VDADVVVPVPDSGVPAAIGYAQESGIPFELGIIRNHYVGRTFIQPTQQIRNLGVKLKHNANRAVIEG 360 (479)
T ss_pred HHHHHHHHHhCC-CCCeEEEEcCccHHHHHHHHHHhcCCCeeheEEEEeecCccccccccccccccEEEEecccccccCC
Confidence 345556655543 356789999999999999999999999862 2233321 1112111 12 223789
Q ss_pred CEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEE-----EeccCCh---hHHHHHhhcCCCEEEEecCCCCCCCCCCCC
Q psy17482 249 RVAILVDDMADTCGTICHAAEKLMEAGATKVYAIL-----THGIFSG---PAINRINNACFEAVVVTNTIPQDGHMKDCT 320 (353)
Q Consensus 249 k~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~-----tHglfs~---~a~~~l~~s~id~ii~TnTi~~~~~~~~~~ 320 (353)
|+|+||||+++||.|+.++++.|+++||++|++++ +|+.|.+ ++.+.|..+.. +++...+....+
T Consensus 361 k~vvlvDD~i~tG~Tl~~~~~~l~~~Ga~~v~~~~~~p~~~~~~~~gid~~~~~~l~~~~~-------~~~ei~~~igad 433 (479)
T PRK09123 361 KRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRIASPPITHPCFYGIDTPERSKLLAATH-------SLEEMAEYIGAD 433 (479)
T ss_pred CEEEEEeceeCchHHHHHHHHHHHHcCCCEEEEEEcCCCCccceeecCCCCCHHHHHHcCC-------CHHHHHHHhCCC
Confidence 99999999999999999999999999999999999 9999998 77877755432 221111112345
Q ss_pred CeeEEehHHHHH
Q psy17482 321 KIRCIDVSMMFA 332 (353)
Q Consensus 321 ki~~lsva~lla 332 (353)
.+..+|+..++.
T Consensus 434 sl~yls~~~l~~ 445 (479)
T PRK09123 434 SLAFLSIDGLYR 445 (479)
T ss_pred eEeccCHHHHHH
Confidence 677888877654
No 62
>PLN02440 amidophosphoribosyltransferase
Probab=99.09 E-value=7.8e-10 Score=113.50 Aligned_cols=111 Identities=18% Similarity=0.227 Sum_probs=78.2
Q ss_pred cCcccccccc------HHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEE-EEEeecC------------
Q psy17482 173 FDIPVDNLYA------EPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFAL-IHKERKK------------ 233 (353)
Q Consensus 173 F~ip~~~l~a------~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~-l~K~R~~------------ 233 (353)
|..|...+.. -..+++.|.+..+ .+.++||+...++...|..+++.+|+|+.. +.|.|..
T Consensus 245 f~~p~s~~~g~~~y~~r~~~g~~La~~~~-~~~d~vvpVP~s~~~~A~~la~~lgiP~~~~lvr~ry~~rt~i~~~q~~r 323 (479)
T PLN02440 245 FARPNSIVFGRSVYESRLEFGEILATEIP-VDCDVVIPVPDSGRVAALGYAAKLGVPFQQGLIRSHYVGRTFIEPSQKIR 323 (479)
T ss_pred ecCCCccccCeEhHHHHHHHHHHHHHhcC-CCCCEEEEeCCcHHHHHHHHHHHhCCCchhheEEEeeccccccCcchhhh
Confidence 5555544422 3355566655543 245678888888899999999999999752 2233321
Q ss_pred CCceEE-EE-eecCCCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEE
Q psy17482 234 ANEVAS-MV-LVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILT 284 (353)
Q Consensus 234 ~~~v~~-~~-~~gdv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~t 284 (353)
...+.. .. ....++||+|+||||+++||.|+.++++.|+++||++|.+++.
T Consensus 324 ~~~~~~k~~~~~~~v~gk~VlLVDDiittGtTl~~i~~~L~~aGa~~V~v~v~ 376 (479)
T PLN02440 324 DFSVKLKLNPVRSVLEGKRVVVVDDSIVRGTTSSKIVRMLREAGAKEVHMRIA 376 (479)
T ss_pred hhhheeeeecccccccCceEEEEeceeCcHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 011111 11 2256899999999999999999999999999999999999985
No 63
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.05 E-value=7e-10 Score=112.61 Aligned_cols=101 Identities=18% Similarity=0.201 Sum_probs=72.0
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEE-EEEeecC------CCc--eE----EEEeecCCCCCEE
Q psy17482 185 AVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFAL-IHKERKK------ANE--VA----SMVLVGDVKDRVA 251 (353)
Q Consensus 185 ~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~-l~K~R~~------~~~--v~----~~~~~gdv~Gk~V 251 (353)
.+.++|.+..+...+.|+..||.|. .+|..+|+.+|+|+.. +.|.|.. +.+ .. .....+.++||+|
T Consensus 259 ~~G~~La~~~~~~~D~Vv~VPdsg~-~~A~~~a~~lgip~~~~l~k~r~~~rtfi~~~qr~~~~~~k~~~~~~~v~gk~V 337 (442)
T PRK08341 259 RMGVELARESPAEGDVVIAVPDSGR-TAALGFAHESGIPYMEGLIKNRYIGRTFIMPSGRELKVKLKLSPVREVINGKRV 337 (442)
T ss_pred HHHHHhhcccCCCCceEEEecCchH-HHHHHHHHHhCCCchheEEEeccccccccCcCchhhhheeeecccccccCCCEE
Confidence 4555555544322345555566555 7999999999999863 6666531 111 11 1123456899999
Q ss_pred EEEecccCChHHHHHHHHHHHhcCCCEEEEEEEec
Q psy17482 252 ILVDDMADTCGTICHAAEKLMEAGATKVYAILTHG 286 (353)
Q Consensus 252 lIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHg 286 (353)
+||||+++||.|+.++++.|+++||++|.+.++-|
T Consensus 338 lLVDD~IttGtTl~~~~~~L~~aGAk~V~~~~~sp 372 (442)
T PRK08341 338 VLVDDSIVRGTTMKRIVKMLRDAGAREVHVRIASP 372 (442)
T ss_pred EEEeeeeccHHHHHHHHHHHHhcCCcEEEEEEcCC
Confidence 99999999999999999999999999999987544
No 64
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.00 E-value=1.8e-09 Score=111.48 Aligned_cols=104 Identities=22% Similarity=0.240 Sum_probs=75.1
Q ss_pred cHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEE-EEEeecCC------C------ceE-EEE-eecCC
Q psy17482 182 AEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFAL-IHKERKKA------N------EVA-SMV-LVGDV 246 (353)
Q Consensus 182 a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~-l~K~R~~~------~------~v~-~~~-~~gdv 246 (353)
....||+++.+.....+.++|++....+...|..+|+.+|+|+.. +.|.|... + .++ .+. ....+
T Consensus 277 lg~~LA~~l~~~~~~~~~D~VvpVP~s~~~~A~~la~~lgip~~~~l~k~~~~~rt~i~~~q~~R~~~vr~~f~~~~~~v 356 (501)
T PRK09246 277 MGEKLAEKIKREWPDLDIDVVIPIPDTSRDAALEIARILGVPYREGFVKNRYVGRTFIMPGQAQRKKSVRQKLNAIRAEF 356 (501)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEeCccHHHHHHHHHHHHCCCccceEEEEecccccccCcCHHHHHHHHHhhcCCccccc
Confidence 356677776655432234567777777899999999999999752 22322210 0 011 112 24468
Q ss_pred CCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEe
Q psy17482 247 KDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTH 285 (353)
Q Consensus 247 ~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tH 285 (353)
+||+|+||||+++||.|+.++++.|+++||++|+++++-
T Consensus 357 ~gK~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v~a 395 (501)
T PRK09246 357 KGKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFASAA 395 (501)
T ss_pred cCCeEEEEeccccccHHHHHHHHHHHHcCCCEEEEEEEc
Confidence 999999999999999999999999999999999999864
No 65
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=98.99 E-value=4.5e-09 Score=92.58 Aligned_cols=97 Identities=16% Similarity=0.190 Sum_probs=68.3
Q ss_pred HHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEE-EEEEee---cCCCceEEEEeecCCCCCEEEEEeccc
Q psy17482 183 EPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFA-LIHKER---KKANEVASMVLVGDVKDRVAILVDDMA 258 (353)
Q Consensus 183 ~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~-~l~K~R---~~~~~v~~~~~~gdv~Gk~VlIVDDII 258 (353)
...+++.|.+. .+.+++|++..||+.+|..++.+|+++.. +++-.+ ...+...... ....+||+||||||++
T Consensus 19 i~~la~~I~~~---~~~d~vvgv~~GG~~fa~~L~~~L~~~~v~~i~~ssY~~~~~~~~~~~~-~~~~~gk~VLIVDDIi 94 (156)
T PRK09177 19 ARALAWRLLPA---GQWKGIIAVTRGGLVPAAILARELGIRLVDTVCISSYDHDNQGELKVLK-RAEGDGEGFLVVDDLV 94 (156)
T ss_pred HHHHHHHHHhh---CCCCEEEEEecCCeehHHHHHHHcCCCceeEEEEEEECCCcCCcEEEec-CCCcCcCEEEEEeeee
Confidence 55677777653 24579999999999999999999999853 332211 1222222211 1246899999999999
Q ss_pred CChHHHHHHHHHHHhcCCCEEEEEEEeccCChh
Q psy17482 259 DTCGTICHAAEKLMEAGATKVYAILTHGIFSGP 291 (353)
Q Consensus 259 ~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~ 291 (353)
|||.|+.++.+.+++ +..++ ++.++
T Consensus 95 DTG~Tl~~v~~~l~~-----v~~a~---l~~K~ 119 (156)
T PRK09177 95 DTGGTARAVREMYPK-----AHFAT---VYAKP 119 (156)
T ss_pred CCHHHHHHHHHHHhh-----CCEEE---EEECc
Confidence 999999999999974 45555 44554
No 66
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=98.99 E-value=1.7e-09 Score=110.08 Aligned_cols=140 Identities=15% Similarity=0.155 Sum_probs=90.1
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEE-EEEeecC------CCc------eE--EEEeecCCCC
Q psy17482 184 PAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFAL-IHKERKK------ANE------VA--SMVLVGDVKD 248 (353)
Q Consensus 184 ~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~-l~K~R~~------~~~------v~--~~~~~gdv~G 248 (353)
..+++.|.+..+ .+.++||+....|...|..+|+.+|+|+.. +.|.|.. +.+ ++ .......++|
T Consensus 260 ~~~g~~La~~~~-~~~D~Vv~VP~sg~~~A~~la~~lgip~~~~l~r~~~~~r~~i~~~q~~R~~~v~~k~~~~~~~~~g 338 (442)
T TIGR01134 260 KRMGEKLARESP-VEADVVIPVPDSGRSAALGFAQASGIPYREGLIKNRYVGRTFIMPTQELRELSVRLKLNPIREVFRG 338 (442)
T ss_pred HHHHHHHHHhcC-CCCEEEEEccCCHHHHHHHHHHHhCCCchHHeEEeccccccccCCCHHHHHHHHhhhcccccccCCC
Confidence 345555655443 345567776667899999999999999863 3443321 111 11 1123456899
Q ss_pred CEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEe---------ccCChhHHHHHhhcCCCEEEEecCCCCCCCCCCC
Q psy17482 249 RVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTH---------GIFSGPAINRINNACFEAVVVTNTIPQDGHMKDC 319 (353)
Q Consensus 249 k~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tH---------glfs~~a~~~l~~s~id~ii~TnTi~~~~~~~~~ 319 (353)
|+|+||||+++||.|+.++++.|+++||++|.+++.- |+..+.--+++.. . -++....+....
T Consensus 339 k~v~lvDD~ittG~T~~~~~~~l~~~ga~~v~~~~~spp~~~pc~yg~d~~~~~el~~~-~-------~~~~~i~~~~~~ 410 (442)
T TIGR01134 339 KRVVLVDDSIVRGTTSRQIVKMLRDAGAKEVHVRIASPPIRYPCYYGIDMPTREELIAN-G-------RTVEEIAKEIGA 410 (442)
T ss_pred CEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEEccCCccCCcccccCCCCHHHHhhc-C-------CCHHHHHHHhCC
Confidence 9999999999999999999999999999999988752 2333332333321 1 122111111235
Q ss_pred CCeeEEehHHHHH
Q psy17482 320 TKIRCIDVSMMFA 332 (353)
Q Consensus 320 ~ki~~lsva~lla 332 (353)
+-+.++++..++.
T Consensus 411 ~~l~~~~~~~l~~ 423 (442)
T TIGR01134 411 DSLAYLSLEGLKE 423 (442)
T ss_pred CEEEEecHHHHHH
Confidence 6788888877654
No 67
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=98.94 E-value=3.6e-09 Score=95.92 Aligned_cols=100 Identities=24% Similarity=0.289 Sum_probs=74.1
Q ss_pred cHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCC-cEEEEEEeecC-C----CceEEE-EeecC-CCCCEEEE
Q psy17482 182 AEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNV-EFALIHKERKK-A----NEVASM-VLVGD-VKDRVAIL 253 (353)
Q Consensus 182 a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~-~~~~l~K~R~~-~----~~v~~~-~~~gd-v~Gk~VlI 253 (353)
.+..||+.|.+. ++...+||++..||+..|+-+++.||+ ++..+.-.... . ++.... .+.-+ +.||+|||
T Consensus 15 ~~~~lA~kI~~s--~~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y~~~~~~~~~~~v~~~~~~d~l~GkkVLI 92 (192)
T COG2236 15 LCRALAEKIRAS--GFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHYDETAERDGEAKVKYPITIDPLSGKKVLI 92 (192)
T ss_pred HHHHHHHHHHHc--CCCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEEEehhhcccCCcceeecCccccccCCCeEEE
Confidence 366788888765 467889999999999999999999998 55444322211 1 122222 23345 89999999
Q ss_pred EecccCChHHHHHHHHHHHhcCCCEEEEEE
Q psy17482 254 VDDMADTCGTICHAAEKLMEAGATKVYAIL 283 (353)
Q Consensus 254 VDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~ 283 (353)
||||.|||.||..|.+.|++..+..+..++
T Consensus 93 VDDI~DTG~Tl~~a~~~l~~~~p~e~rta~ 122 (192)
T COG2236 93 VDDIVDTGETLELALEELKKLAPAEVRTAV 122 (192)
T ss_pred EecccCchHhHHHHHHHHHhhCchhhhhhh
Confidence 999999999999999999996666664443
No 68
>KOG1712|consensus
Probab=98.94 E-value=8e-09 Score=90.04 Aligned_cols=115 Identities=26% Similarity=0.269 Sum_probs=91.9
Q ss_pred HHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeecCCCceEE-----------EEe-ecCC-CCC
Q psy17482 183 EPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVAS-----------MVL-VGDV-KDR 249 (353)
Q Consensus 183 ~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~v~~-----------~~~-~gdv-~Gk 249 (353)
...+++++++.. +.+-.+|++.+..|..+.-.+|-++|+.++-++|..+-++++-. +.+ .+.+ .|.
T Consensus 45 idlf~~h~~~~~-~~~Id~iaGlEaRGFLFGP~iAlalG~~fVPiRK~gKLPG~~i~~~Y~lEYg~d~~Emq~~Ai~~g~ 123 (183)
T KOG1712|consen 45 IDLFVDHYRETF-EMKIDVIAGLEARGFLFGPSIALALGAGFVPIRKPGKLPGEVISESYELEYGEDRFEMQKGAIKPGQ 123 (183)
T ss_pred HHHHHHHHHHHh-cCcceEEEeeeecceecCcHHHHHhCCCeeecccCCCCCCceeEEEEeeecCccceeeeccccCCCC
Confidence 566777777655 34568999999999999999999999999988887666665321 111 2345 489
Q ss_pred EEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhh
Q psy17482 250 VAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINN 298 (353)
Q Consensus 250 ~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~ 298 (353)
+|+||||++.||||+.+|.+.+.+.||.-+-++|.-.+-+-...++|..
T Consensus 124 rvvvVDDllATGGTl~AA~~Ll~r~ga~vvE~~~vieL~~LkGr~kL~~ 172 (183)
T KOG1712|consen 124 RVVVVDDLLATGGTLAAATELLERVGAEVVECACVIELPELKGREKLKG 172 (183)
T ss_pred eEEEEechhhcCccHHHHHHHHHHhccEEEEEEEEEEccccCCccccCC
Confidence 9999999999999999999999999999999988766655566777764
No 69
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=98.91 E-value=7.3e-09 Score=106.58 Aligned_cols=100 Identities=17% Similarity=0.199 Sum_probs=74.8
Q ss_pred HHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEE-EEEeecC------CC--------ceEEEEeecCCCC
Q psy17482 184 PAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFAL-IHKERKK------AN--------EVASMVLVGDVKD 248 (353)
Q Consensus 184 ~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~-l~K~R~~------~~--------~v~~~~~~gdv~G 248 (353)
..++++|.+..+ .+.++||++...|...|..+|+.+|+|+.. +.|.|.. +. +.+...+...++|
T Consensus 299 ~~~G~~La~~~~-~~~DvVv~VP~sg~~~A~g~A~~lgip~~~~L~r~~y~grtfi~p~q~~R~~~~~~kl~~~~~~~~g 377 (500)
T PRK07349 299 QRLGQQLAKESP-VDADLVIGVPDSGIPAAIGFSQASGIPYAEGLIKNRYVGRTFIQPTQSMRESGIRMKLNPLKDVLAG 377 (500)
T ss_pred HHHHHHHhhhcc-cCCcEEEEeccccHHHHHHHHHHHCCCchhceEEEeccCccccCCCHHHHHhhhheeeeccccccCC
Confidence 356666665442 345688888889999999999999999862 3343322 11 0111123446799
Q ss_pred CEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEE
Q psy17482 249 RVAILVDDMADTCGTICHAAEKLMEAGATKVYAILT 284 (353)
Q Consensus 249 k~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~t 284 (353)
|+|+||||+++||.|+.++++.|+++||++|++..+
T Consensus 378 krVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~i~ 413 (500)
T PRK07349 378 KRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMRIS 413 (500)
T ss_pred CEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEEeC
Confidence 999999999999999999999999999999998754
No 70
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=98.87 E-value=1.2e-08 Score=104.57 Aligned_cols=102 Identities=19% Similarity=0.236 Sum_probs=74.7
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEE-EEEeecCC------C------ceE-EEE-eecCCCCC
Q psy17482 185 AVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFAL-IHKERKKA------N------EVA-SMV-LVGDVKDR 249 (353)
Q Consensus 185 ~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~-l~K~R~~~------~------~v~-~~~-~~gdv~Gk 249 (353)
.+.+.|.+..+ .+.++|++....|...|..+|+.+|+|+.. +.|.|... + .++ .+. ....++||
T Consensus 271 ~~G~~La~~~~-~~~D~vv~VP~s~~~~A~~~a~~~gip~~~~lik~~~~~rt~~~~~~~~R~~~v~~~f~~~~~~i~gk 349 (471)
T PRK06781 271 NMGKRLAAEAP-IEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQELREQGVKMKLSAVRGVVEGK 349 (471)
T ss_pred HHHHHHhhhCC-CCCcEEEEcChhHHHHHHHHHHHhCCCcccceEEEccCCCCCcCCCHHHHHHHHhcceeccccccCCc
Confidence 45555555442 245577877778899999999999999863 33333211 1 111 222 24568999
Q ss_pred EEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEecc
Q psy17482 250 VAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGI 287 (353)
Q Consensus 250 ~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHgl 287 (353)
+|+||||+++||.|+.+++++|+++||++|+++.+-|-
T Consensus 350 ~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~sPp 387 (471)
T PRK06781 350 RVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIASPP 387 (471)
T ss_pred eEEEEeceeccchHHHHHHHHHHHcCCcEEEEEECCCC
Confidence 99999999999999999999999999999999986553
No 71
>KOG3367|consensus
Probab=98.82 E-value=1.7e-08 Score=88.89 Aligned_cols=122 Identities=16% Similarity=0.209 Sum_probs=88.3
Q ss_pred HHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcC-------Cc--EEEEEEeec----CCCceEEEE--eecCCC
Q psy17482 183 EPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLN-------VE--FALIHKERK----KANEVASMV--LVGDVK 247 (353)
Q Consensus 183 ~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg-------~~--~~~l~K~R~----~~~~v~~~~--~~gdv~ 247 (353)
...||+-+.+.. +.++.++++..+||.++.+.+.++|. +| +++++-+.. ++++++.+. ...++.
T Consensus 46 ~~rlakDi~~~~-g~~~i~~lcVlkG~ykF~adLve~l~n~~s~~~~pmtvDFIR~kSY~n~~stg~iqiig~d~l~~lt 124 (216)
T KOG3367|consen 46 VERLAKDIMKEI-GNKPIIFLCVLKGGYKFFADLVERLKNRNSDRPLPMTVDFIRAKSYCNDQSTGDIQIIGGDDLSTLT 124 (216)
T ss_pred HHHhhhhhhhcc-CCCceEEEEEecchhHHHHHHHHHHhhcccCCCcceeeeeeehhhhcCCcccCCceeecCCCHHHhc
Confidence 566787777765 45778999999999999999999863 23 334442221 234443322 223589
Q ss_pred CCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcCCCEEEEecCCC
Q psy17482 248 DRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTNTIP 311 (353)
Q Consensus 248 Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~id~ii~TnTi~ 311 (353)
||+|+|||||++||.||......+++.+++.|.++. ++++.... .-+....++-=-||
T Consensus 125 gK~VliVeDIvdTGrTl~~Lls~~~~~k~~~v~vas---LL~Krt~R---~v~yk~dy~gFEiP 182 (216)
T KOG3367|consen 125 GKNVLIVEDIVDTGRTLSTLLSHMKAYKPSMVKVAS---LLVKRTRR---SVGYKPDYVGFEIP 182 (216)
T ss_pred CCcEEEEEeeccccchHHHHHHHHHhcCccceeeee---eccccccc---ccCCCcccccccCC
Confidence 999999999999999999999999999999999998 88886542 23555555544444
No 72
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=98.80 E-value=2e-08 Score=102.87 Aligned_cols=101 Identities=20% Similarity=0.240 Sum_probs=73.6
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEE-EEEeecCC------C------ceE-EEE-eecCCCCC
Q psy17482 185 AVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFAL-IHKERKKA------N------EVA-SMV-LVGDVKDR 249 (353)
Q Consensus 185 ~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~-l~K~R~~~------~------~v~-~~~-~~gdv~Gk 249 (353)
.+.+.|.+..+ .+.++|++....|...|..+|+.+|+|+.. +.|.|... + .++ .+. ..+.++||
T Consensus 271 ~~G~~La~~~~-~~~D~VvpVP~s~~~~A~gla~~~gip~~~~lik~~~~~Rt~i~~~~~~R~~nv~~~f~~~~~~v~gk 349 (475)
T PRK07631 271 NLGKRLALEAP-VEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQALREQGVKMKLSPVRGVVEGK 349 (475)
T ss_pred HHHHHHHhhCC-CCCcEEEEechhHHHHHHHHHHHHCCCcccceEEEecCCCCCcCCCHHHHHHHHhhhhhhcccccCCc
Confidence 45555555442 345677777777889999999999999863 33433211 1 011 122 24568999
Q ss_pred EEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEec
Q psy17482 250 VAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHG 286 (353)
Q Consensus 250 ~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHg 286 (353)
+|+||||+++||.|+.++++.|+++||++|++..+-|
T Consensus 350 ~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~~sP 386 (475)
T PRK07631 350 RVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRISSP 386 (475)
T ss_pred eEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEeCC
Confidence 9999999999999999999999999999999988654
No 73
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.75 E-value=5.5e-08 Score=85.23 Aligned_cols=123 Identities=22% Similarity=0.249 Sum_probs=85.7
Q ss_pred HHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcC------CcEEEEE--EeecCC-------CceEEEEeecCCC
Q psy17482 183 EPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLN------VEFALIH--KERKKA-------NEVASMVLVGDVK 247 (353)
Q Consensus 183 ~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg------~~~~~l~--K~R~~~-------~~v~~~~~~gdv~ 247 (353)
..-++.+|.++..+.++.++++.-.+|++.|..++++++ +|+..++ -.|+.- .......+..++.
T Consensus 16 itRia~eIiErnk~~~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~lDIt~yRDDl~~~~~~~p~~~~t~~~~di~ 95 (179)
T COG2065 16 ITRIAHEIIERNKGLDNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGELDITLYRDDLTQKGPLRPQAKTTILPFDIT 95 (179)
T ss_pred HHHHHHHHHHHhCCCCceEEEeEecCCHHHHHHHHHHHHHHhCCCCCeeeEEeEEeechhhhcCccCCcccCccCccccc
Confidence 344666676665567899999999999999999999873 4554333 234321 1112224566899
Q ss_pred CCEEEEEecccCChHHHHHHHHHHHhcC-CCEEEEEEEeccCChhHHHHHhhcCCCEEEEecCCCC
Q psy17482 248 DRVAILVDDMADTCGTICHAAEKLMEAG-ATKVYAILTHGIFSGPAINRINNACFEAVVVTNTIPQ 312 (353)
Q Consensus 248 Gk~VlIVDDII~TG~Tl~~aa~~Lk~~G-A~~V~~~~tHglfs~~a~~~l~~s~id~ii~TnTi~~ 312 (353)
||+|+||||++-||.|+.+|.++|...| +.+|.++| +...+..| -+|.-=|+--.+|.
T Consensus 96 ~k~VILVDDVLytGRTIRAAldal~d~GRPa~I~Lav---LVDRGHRE----LPIRaDyVGKniPT 154 (179)
T COG2065 96 GKRVILVDDVLYTGRTIRAALDALVDYGRPAKIQLAV---LVDRGHRE----LPIRADYVGKNIPT 154 (179)
T ss_pred CCEEEEEeeecccCccHHHHHHHHHhcCCcceEEEEE---EEcCCCcc----CCcccccccCcCCC
Confidence 9999999999999999999999999999 45788877 55555432 23444444445554
No 74
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=98.75 E-value=6.6e-08 Score=99.06 Aligned_cols=101 Identities=13% Similarity=0.164 Sum_probs=70.4
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEE-EEEeecCC------C-c-----eEEE--EeecCCCCC
Q psy17482 185 AVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFAL-IHKERKKA------N-E-----VASM--VLVGDVKDR 249 (353)
Q Consensus 185 ~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~-l~K~R~~~------~-~-----v~~~--~~~gdv~Gk 249 (353)
.+.+.|.+..+ .+.++||+....+...|..+|+.+|+|+.. +.|.|... . + ++.. .....++||
T Consensus 279 ~~G~~La~~~~-~~~D~VvpVP~s~~~~A~g~a~~~gip~~~~L~r~r~~~r~fi~~~q~~R~~~~~~kl~~~~~~i~gk 357 (474)
T PRK06388 279 RMGMRLAKESP-VEADVVVPVPDSGRSQAIGFSMASGIPYTEGLIKNRYSERTFIMPTQSDRKAAIKLKLNPIREVISGK 357 (474)
T ss_pred HHHHHHHhhcc-CCCcEEEeeCCCcHHHHHHHHHHhCCCchhheEEecccCCcccCCchhhhhhceeEEeccccccccCc
Confidence 45555555432 244556665555677899999999999853 34433221 1 1 1111 123357899
Q ss_pred EEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEec
Q psy17482 250 VAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHG 286 (353)
Q Consensus 250 ~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHg 286 (353)
+|+||||+++||.|+.+++++|+++||++|.+..+-|
T Consensus 358 ~VlLVDDsittGtTl~~~~~~L~~aGak~V~~ri~sP 394 (474)
T PRK06388 358 RIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIGSP 394 (474)
T ss_pred eEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 9999999999999999999999999999999887644
No 75
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=98.61 E-value=1.9e-07 Score=96.37 Aligned_cols=101 Identities=16% Similarity=0.213 Sum_probs=70.7
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEE-EEEeecC------CC------ceEE-E-EeecCCCCC
Q psy17482 185 AVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFAL-IHKERKK------AN------EVAS-M-VLVGDVKDR 249 (353)
Q Consensus 185 ~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~-l~K~R~~------~~------~v~~-~-~~~gdv~Gk 249 (353)
.+.+.|.+..+ .+.++|++....|...|..+|+.+|+|+.. +.|.|.. .. .++. . .+...++||
T Consensus 290 ~~G~~La~~~~-~~~D~VvpVP~sG~~~A~g~a~~~gip~~~~l~kn~~~grtfi~~~q~~r~~~~r~k~~~~~~~~~gk 368 (510)
T PRK07847 290 EIGRRLAREHP-VEADLVIPVPESGTPAAVGYAQESGIPFGQGLVKNAYVGRTFIQPSQTIRQLGIRLKLNPLREVIRGK 368 (510)
T ss_pred HHHHHHHhhCC-CCCeEEEeccCchHHHHHHHHHHhCCChhhceEeecccccCccCcchhhhhhceeeecCccccccCCC
Confidence 45555555443 345566774455799999999999999853 3343211 11 1111 0 123347999
Q ss_pred EEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEec
Q psy17482 250 VAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHG 286 (353)
Q Consensus 250 ~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHg 286 (353)
+||||||+++||.|+.++++.|+++||++|.+..+-|
T Consensus 369 ~vllVDD~ittG~T~~~~~~~L~~~ga~~v~~ri~sP 405 (510)
T PRK07847 369 RLVVVDDSIVRGNTQRALVRMLREAGAAEVHVRISSP 405 (510)
T ss_pred EEEEEecccCchHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 9999999999999999999999999999999876544
No 76
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.40 E-value=4.1e-06 Score=76.67 Aligned_cols=114 Identities=20% Similarity=0.242 Sum_probs=91.0
Q ss_pred CCeEEEecCCCchhhHHHHHHHcC-CcEEEEEEeecC-CCceEEE--EeecCCCCCEEEEEecccCChHHHHHHHHHHHh
Q psy17482 198 KNSIIVSPDAGGAKRVTSIADRLN-VEFALIHKERKK-ANEVASM--VLVGDVKDRVAILVDDMADTCGTICHAAEKLME 273 (353)
Q Consensus 198 ~~~vvVspd~Gg~~ra~~la~~Lg-~~~~~l~K~R~~-~~~v~~~--~~~gdv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~ 273 (353)
++.++|+....|......+.+.+- ..+..+--+|+. +.+.... .+..+++++.|+|+|-|+.||+|+..|.+.|++
T Consensus 70 ~~i~~V~ILRAGl~m~~gl~~~~P~a~vG~ig~~Rdeet~~p~~yy~KLP~~~~~~~viv~DPMLATG~s~i~ai~~L~~ 149 (210)
T COG0035 70 KKIVIVPILRAGLGMVEGLLKLIPSARVGHIGIYRDEETLEPVLYYEKLPEDIDERTVIVLDPMLATGGSAIAAIDLLKK 149 (210)
T ss_pred CcEEEEEEeeccccHHHHHHHhCCcceEEEEEEEecCccCceehhHHhCCCcccCCeEEEECchhhccHhHHHHHHHHHH
Confidence 448899999999999999988864 344444455653 3332211 245589999999999999999999999999999
Q ss_pred c-CCCEEEEEEEeccCChhHHHHHhhcCCCEEEEecCCCCC
Q psy17482 274 A-GATKVYAILTHGIFSGPAINRINNACFEAVVVTNTIPQD 313 (353)
Q Consensus 274 ~-GA~~V~~~~tHglfs~~a~~~l~~s~id~ii~TnTi~~~ 313 (353)
+ |+++|.+++. +.++++++++.+.+-+--++|-++...
T Consensus 150 ~G~~~~I~~v~~--vAapeGi~~v~~~~p~v~I~ta~iD~~ 188 (210)
T COG0035 150 RGGPKNIKVVSL--VAAPEGIKAVEKAHPDVEIYTAAIDEG 188 (210)
T ss_pred hCCCceEEEEEE--EecHHHHHHHHHhCCCCeEEEEEeccc
Confidence 9 8999998885 778899999999888888888888754
No 77
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=98.37 E-value=2.7e-07 Score=92.52 Aligned_cols=101 Identities=20% Similarity=0.213 Sum_probs=74.7
Q ss_pred HHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEE-EEEeecC------CCc--------eEEEEeecCCCCC
Q psy17482 185 AVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFAL-IHKERKK------ANE--------VASMVLVGDVKDR 249 (353)
Q Consensus 185 ~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~-l~K~R~~------~~~--------v~~~~~~gdv~Gk 249 (353)
.+.+.|.+..+ .+.++|++....|...|-.+|+.+|+|+.. +-|.|.. +++ .+...+...++||
T Consensus 271 ~mG~~La~e~~-~eaDvVipVPDSg~~aAig~A~~sGiPy~~GliKNrYvgRTFI~P~q~~R~~~Vr~KLnpvr~~v~GK 349 (470)
T COG0034 271 RMGEKLAEEIP-VEADVVIPVPDSGRPAAIGYARASGIPYEEGLIKNRYVGRTFIMPTQELREKGVRLKLNPVREVVKGK 349 (470)
T ss_pred HHHHHHHHhCC-ccccEEEecCCCChHHHHHHHHHhCCchhhccccccccceeeeCCcHHHHHhhhhhhcCchHHHhCCC
Confidence 44555555543 345688888889999999999999999853 2344432 111 1111334568999
Q ss_pred EEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEec
Q psy17482 250 VAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHG 286 (353)
Q Consensus 250 ~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHg 286 (353)
+|+||||-|=.|.|+.+.+++|+++||++|++...-|
T Consensus 350 rVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvriasP 386 (470)
T COG0034 350 RVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIASP 386 (470)
T ss_pred eEEEEccccccCccHHHHHHHHHHhCCCEEEEEecCC
Confidence 9999999999999999999999999999999976433
No 78
>PLN02541 uracil phosphoribosyltransferase
Probab=98.36 E-value=6e-06 Score=77.83 Aligned_cols=112 Identities=18% Similarity=0.210 Sum_probs=83.4
Q ss_pred CeEEEecCCCchhhHHHHHHHc-CCcEEEEEEeecC-CCceEEE--EeecCCC-CCEEEEEecccCChHHHHHHHHHHHh
Q psy17482 199 NSIIVSPDAGGAKRVTSIADRL-NVEFALIHKERKK-ANEVASM--VLVGDVK-DRVAILVDDMADTCGTICHAAEKLME 273 (353)
Q Consensus 199 ~~vvVspd~Gg~~ra~~la~~L-g~~~~~l~K~R~~-~~~v~~~--~~~gdv~-Gk~VlIVDDII~TG~Tl~~aa~~Lk~ 273 (353)
+.++|+....|..+...+.+.+ +.....+.-+|+. +.+.... .+..++. +++|+|+|||+.||+|+..|++.|++
T Consensus 103 ~i~~V~ILRAGl~m~~g~~~~~P~a~vg~i~~~rd~~t~e~~~yy~kLP~~i~~~~~VlllDpmLATGgS~~~ai~~L~~ 182 (244)
T PLN02541 103 PVAVVPILRAGLVLLEHASSVLPATKTYHLGFVRDEETLQPSMYLNKLPDKFPEGSRVLVVDPMLATGGTIVAAIDELVS 182 (244)
T ss_pred cEEEEeEeCCcHhHHHHHHhhCCCCeeEEEEEEEcccccceEEeeccCchhcCCCCEEEEECcchhhhHHHHHHHHHHHH
Confidence 4889999999999988887755 3344444445543 2222221 2345665 67999999999999999999999999
Q ss_pred cCCC--EEEEEEEeccCChhHHHHHhhcCCCEEEEecCCCC
Q psy17482 274 AGAT--KVYAILTHGIFSGPAINRINNACFEAVVVTNTIPQ 312 (353)
Q Consensus 274 ~GA~--~V~~~~tHglfs~~a~~~l~~s~id~ii~TnTi~~ 312 (353)
+|+. +|.+++. +.++.+++++.+...+--++|-.|..
T Consensus 183 ~Gv~~~~I~~v~~--ias~~Gl~~i~~~fP~v~I~ta~ID~ 221 (244)
T PLN02541 183 RGASVEQIRVVCA--VAAPPALKKLSEKFPGLHVYAGIIDE 221 (244)
T ss_pred cCCCcccEEEEEE--EECHHHHHHHHHHCcCCEEEEEEECc
Confidence 9998 7777764 77889999998876676667777764
No 79
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=98.36 E-value=4.5e-06 Score=76.79 Aligned_cols=113 Identities=23% Similarity=0.261 Sum_probs=88.3
Q ss_pred CCeEEEecCCCchhhHHHHHHHc-CCcEEEEEEeecC-CCceEEE--EeecCCCCCEEEEEecccCChHHHHHHHHHHHh
Q psy17482 198 KNSIIVSPDAGGAKRVTSIADRL-NVEFALIHKERKK-ANEVASM--VLVGDVKDRVAILVDDMADTCGTICHAAEKLME 273 (353)
Q Consensus 198 ~~~vvVspd~Gg~~ra~~la~~L-g~~~~~l~K~R~~-~~~v~~~--~~~gdv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~ 273 (353)
++.++|+...+|..+...+.+.+ +.++..+.-+|+. +.+.... .+..++++++|+|+|-|+.||+|+..+++.|++
T Consensus 67 ~~i~~V~IlRaG~~m~~~~~~~~p~a~~g~i~i~r~~~t~~p~~~y~~LP~~i~~~~VillDpmlaTG~s~~~ai~~L~~ 146 (207)
T PF14681_consen 67 DKICIVPILRAGLPMLEGFREVFPDARVGHIGIQRDEETLEPVLYYNKLPEDIENRKVILLDPMLATGGSAIAAIEILKE 146 (207)
T ss_dssp GCEEEEEETTTHHHHHHHHHHHSTTSEEEEEEEEEETTTSSEEEEEEE--TTGTTSEEEEEESEESSSHHHHHHHHHHHH
T ss_pred ccEEEEEEeCCcHHHHHHHHHhCCCcceEEEEEEEcCCccceeeeHhhCCCCccCCEEEEEeccccchhhHHHHHHHHHH
Confidence 47899999999999999998887 4566666555644 3333322 356788999999999999999999999999999
Q ss_pred cCC--CEEEEEEEeccCChhHHHHHhhcCCCEEEEecCCCC
Q psy17482 274 AGA--TKVYAILTHGIFSGPAINRINNACFEAVVVTNTIPQ 312 (353)
Q Consensus 274 ~GA--~~V~~~~tHglfs~~a~~~l~~s~id~ii~TnTi~~ 312 (353)
+|+ ++|.+++. +.++.+++++.+...+--++|-.|..
T Consensus 147 ~G~~~~~I~~v~~--ias~~Gl~~l~~~~P~v~I~ta~iD~ 185 (207)
T PF14681_consen 147 HGVPEENIIIVSV--IASPEGLERLLKAFPDVRIYTAAIDP 185 (207)
T ss_dssp TTG-GGEEEEEEE--EEEHHHHHHHHHHSTTSEEEEEEEES
T ss_pred cCCCcceEEEEEE--EecHHHHHHHHHhCCCeEEEEEEEcc
Confidence 987 67888774 66788999998877777777777754
No 80
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=98.08 E-value=2.9e-05 Score=75.65 Aligned_cols=128 Identities=18% Similarity=0.125 Sum_probs=94.6
Q ss_pred cCHHHHHHHHHHhCCCccCCCccccC-CCCceeEE-eCCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCeEEE
Q psy17482 21 ASHFFAKQNAEYKGVQRYIPPRLSPE-DRGQIGVE-IGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTA 98 (353)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~f-~dGE~~v~-i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~i~~ 98 (353)
.+..+|+.+|+.||++ +......++ ++||..+. +.++++|++|+|+......-. .++.+++++|+.||++|.+
T Consensus 169 g~~~~A~~lA~~Lg~~-~~~i~k~r~~~~~~~~~~~~~~~v~g~~vliVDDii~tG~----Tl~~a~~~l~~~ga~~v~~ 243 (308)
T TIGR01251 169 GGVERAKKVADALGCP-LAIIDKRRISATNEVEVMNLVGDVEGKDVVIVDDIIDTGG----TIAKAAEILKSAGAKRVIA 243 (308)
T ss_pred chHHHHHHHHHHhCCC-EEEEEEEecCCCCEEEEEecccccCCCEEEEEccccCCHH----HHHHHHHHHHhcCCCEEEE
Confidence 4568999999999987 444555666 77776654 467899999999998654322 6778889999999999999
Q ss_pred EeeCCCccccccccCCCCCCCCchhHHHHhhhccccccCCCCcchHHHHHHHHHHcCCCEEEEEcCChhHHhcccCcccc
Q psy17482 99 VIPCFPYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVD 178 (353)
Q Consensus 99 viPY~~YsRqDr~~~~~~~~~~~~~~~~~~~~~~~~kf~~~e~isak~vA~lL~~~g~d~VitvDlHs~~~~~~F~ip~~ 178 (353)
+.|. ..+. ++. +.+ |.+.|+++|++.|.|... .+|+ +..
T Consensus 244 ~~th-------~v~~-------------------------~~a-----~~~-l~~~~~~~iv~tdt~~~~--~~~~-~~~ 282 (308)
T TIGR01251 244 AATH-------GVFS-------------------------GPA-----IER-IANAGVEEVIVTNTIPHE--KHKP-KVS 282 (308)
T ss_pred EEEe-------eecC-------------------------cHH-----HHH-HHhCCCCEEEEeCCCCcc--ccCC-CcE
Confidence 9982 0111 222 233 445689999999999764 3454 667
Q ss_pred ccccHHHHHHHHHhhC
Q psy17482 179 NLYAEPAVLKWIKENI 194 (353)
Q Consensus 179 ~l~a~~~La~~i~~~~ 194 (353)
.++.++.+++.|....
T Consensus 283 ~v~va~~la~~i~~~~ 298 (308)
T TIGR01251 283 VISVAPLIAEAIRRIH 298 (308)
T ss_pred EEEhHHHHHHHHHHHh
Confidence 7888999999997654
No 81
>KOG0572|consensus
Probab=97.70 E-value=8.6e-05 Score=73.15 Aligned_cols=88 Identities=18% Similarity=0.220 Sum_probs=66.8
Q ss_pred CCCeEEEecCCCchhhHHHHHHHcCCcEE-EEEEeecC------CC-c-------eEEEEeecCCCCCEEEEEecccCCh
Q psy17482 197 WKNSIIVSPDAGGAKRVTSIADRLNVEFA-LIHKERKK------AN-E-------VASMVLVGDVKDRVAILVDDMADTC 261 (353)
Q Consensus 197 ~~~~vvVspd~Gg~~ra~~la~~Lg~~~~-~l~K~R~~------~~-~-------v~~~~~~gdv~Gk~VlIVDDII~TG 261 (353)
.+-++|++....|..-|-.+|.+.|+||. .+.|.|.- ++ + .+...+...++||+|+||||-|--|
T Consensus 290 ~d~DvVi~VPdS~~~aAlgyA~~sG~py~e~l~rnrYvGRTFI~P~q~iR~~~V~~Kl~~l~~~~~GKrvvlVDDSIVRG 369 (474)
T KOG0572|consen 290 VDADVVIPVPDSGTTAALGYAAKSGLPYQEVLIRNRYVGRTFIEPNQRIRQLGVKKKLGPLRQNFEGKRVVLVDDSIVRG 369 (474)
T ss_pred cccceEEecCCchhHHHHHHHHHhCCchhhhhhhcccccceecCccHHHHHhhhhhhcccchhhcCCceEEEEecceecc
Confidence 34566777666777779999999999985 33444421 11 1 1112346678999999999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEEEE
Q psy17482 262 GTICHAAEKLMEAGATKVYAILT 284 (353)
Q Consensus 262 ~Tl~~aa~~Lk~~GA~~V~~~~t 284 (353)
.|+....++||++||++|+....
T Consensus 370 tTs~~IVkmlreaGAkeVh~riA 392 (474)
T KOG0572|consen 370 TTSSPIVKMLREAGAKEVHIRIA 392 (474)
T ss_pred CchHHHHHHHHHcCCcEEEEEec
Confidence 99999999999999999998754
No 82
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.58 E-value=0.0039 Score=61.41 Aligned_cols=136 Identities=10% Similarity=0.089 Sum_probs=96.1
Q ss_pred EEEecCCCchhhHHHHHHHcCCcEEEEEEeecCCCceEEEEeecCCCCCEEEEEecccCC-hHH---HHHHHHHHHhcCC
Q psy17482 201 IIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMADT-CGT---ICHAAEKLMEAGA 276 (353)
Q Consensus 201 vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~v~~~~~~gdv~Gk~VlIVDDII~T-G~T---l~~aa~~Lk~~GA 276 (353)
+++-.-.+...+|..+|+.||+++.-+...|-.+|+.. ..+..++.|++|+||-.+... ... +.-.+.+||++||
T Consensus 22 ~~i~~g~~~~~la~~ia~~lg~~l~~~~~~~FpDGE~~-v~i~~~vrg~~V~ivqs~~~p~nd~l~eLll~~~alr~~ga 100 (330)
T PRK02812 22 LRLFSGSSNPALAQEVARYLGMDLGPMIRKRFADGELY-VQIQESIRGCDVYLIQPTCAPVNDHLMELLIMVDACRRASA 100 (330)
T ss_pred EEEEECCCCHHHHHHHHHHhCCCceeeEEEECCCCCEE-EEeCCCCCCCEEEEECCCCCCccHHHHHHHHHHHHHHHhCC
Confidence 44444677889999999999999887777776777753 356678999999999986543 233 4567789999999
Q ss_pred CEEEEEEEec-------------cCChh-HHHHHhhcCCCEEEEecCCCCCCCCCCC-CCeeEEehHHHHHHHHHHH
Q psy17482 277 TKVYAILTHG-------------IFSGP-AINRINNACFEAVVVTNTIPQDGHMKDC-TKIRCIDVSMMFAEAVRRT 338 (353)
Q Consensus 277 ~~V~~~~tHg-------------lfs~~-a~~~l~~s~id~ii~TnTi~~~~~~~~~-~ki~~lsva~lla~~i~~~ 338 (353)
++|.++.-+- .++-. ..+.|...|+|.|++-|-.....+ ..+ -.+..++-++.+++.|++.
T Consensus 101 ~ri~~ViPYl~YaRQDr~~~~~e~isak~vA~lL~~~g~d~vitvDlH~~~~~-~fF~ipv~nl~~~~~l~~~i~~~ 176 (330)
T PRK02812 101 RQITAVIPYYGYARADRKTAGRESITAKLVANLITKAGADRVLAMDLHSAQIQ-GYFDIPCDHVYGSPVLLDYLASK 176 (330)
T ss_pred ceEEEEEecccccccccccCCCCCchHHHHHHHHHhcCCCEEEEEECCchHHc-CccCCCceeeeChHHHHHHHHhc
Confidence 9999887431 11212 234444558999999887643211 112 2466789999999998763
No 83
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.46 E-value=0.004 Score=60.66 Aligned_cols=125 Identities=13% Similarity=0.087 Sum_probs=88.2
Q ss_pred hHHHHHHHcCCcEEEEEEeecCCCceEEEEeecCCCCCEEEEEecccCC-hHH---HHHHHHHHHhcCCCEEEEEEEe--
Q psy17482 212 RVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMADT-CGT---ICHAAEKLMEAGATKVYAILTH-- 285 (353)
Q Consensus 212 ra~~la~~Lg~~~~~l~K~R~~~~~v~~~~~~gdv~Gk~VlIVDDII~T-G~T---l~~aa~~Lk~~GA~~V~~~~tH-- 285 (353)
+|..+|+.||.++.-+..+|-.+|+.. ..+..+++|++|+||--.... ... +.-.+.+||++||++|.++.-.
T Consensus 1 la~~ia~~l~~~l~~~~~~~F~DGE~~-vri~~~v~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~~a~~i~~ViPYl~ 79 (304)
T PRK03092 1 LAEEVAKELGVEVTPTTAYDFANGEIY-VRFEESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRASAKRITVVLPFYP 79 (304)
T ss_pred CHHHHHHHhCCceeeeEEEECCCCCEE-EEECCCCCCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEEeccc
Confidence 478899999999887777777777753 355678999999998876543 222 4567889999999999988743
Q ss_pred ------------ccCChhHHHHHhhcCCCEEEEecCCCCCCCCCCCC-CeeEEehHHHHHHHHHHH
Q psy17482 286 ------------GIFSGPAINRINNACFEAVVVTNTIPQDGHMKDCT-KIRCIDVSMMFAEAVRRT 338 (353)
Q Consensus 286 ------------glfs~~a~~~l~~s~id~ii~TnTi~~~~~~~~~~-ki~~lsva~lla~~i~~~ 338 (353)
++-.+-..+.|+..|+|+|++-|-.....+ ..++ .+..++.++++++.|+..
T Consensus 80 YaRQDr~~~~~e~isak~va~lL~~~g~d~vitvD~H~~~~~-~~f~~p~~~l~~~~~la~~i~~~ 144 (304)
T PRK03092 80 YARQDKKHRGREPISARLVADLFKTAGADRIMTVDLHTAQIQ-GFFDGPVDHLFAMPLLADYVRDK 144 (304)
T ss_pred ccccccccCCCCCccHHHHHHHHHhcCCCeEEEEecChHHHH-hhcCCCeeeEechHHHHHHHHHh
Confidence 111222334455568999999887743211 1122 467789999999999764
No 84
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.45 E-value=0.0042 Score=60.98 Aligned_cols=138 Identities=8% Similarity=0.102 Sum_probs=95.3
Q ss_pred CCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeecCCCceEEEEeecCCCCCEEEEEecccCC----hHHHHHHHHHHHh
Q psy17482 198 KNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMADT----CGTICHAAEKLME 273 (353)
Q Consensus 198 ~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~v~~~~~~gdv~Gk~VlIVDDII~T----G~Tl~~aa~~Lk~ 273 (353)
++..+++ -.+...+|..+|+.||.++.-+...|-.+|+.. ..+..++.|++|+||-.+... =--+.-.+++||+
T Consensus 4 ~~~~i~~-~~~~~~la~~ia~~lg~~l~~~~~~~FpdGE~~-v~i~~~vrg~dV~iv~s~~~~~nd~lmelll~~~alr~ 81 (320)
T PRK02269 4 SDLKLFA-LSSNKELAEKVAQEIGIELGKSSVRQFSDGEIQ-VNIEESIRGHHVFILQSTSSPVNDNLMEILIMVDALKR 81 (320)
T ss_pred CCeEEEE-CCCCHHHHHHHHHHhCCceeeeEEEECCCCCEE-EEECCCCCCCEEEEEecCCCCccchHHHHHHHHHHHHH
Confidence 3444444 566788999999999999887777777777753 356678999999999776432 2235677899999
Q ss_pred cCCCEEEEEEEec-------------cCChhH-HHHHhhcCCCEEEEecCCCCCCCCCCCC-CeeEEehHHHHHHHHHHH
Q psy17482 274 AGATKVYAILTHG-------------IFSGPA-INRINNACFEAVVVTNTIPQDGHMKDCT-KIRCIDVSMMFAEAVRRT 338 (353)
Q Consensus 274 ~GA~~V~~~~tHg-------------lfs~~a-~~~l~~s~id~ii~TnTi~~~~~~~~~~-ki~~lsva~lla~~i~~~ 338 (353)
+||++|.++.-+- .++-.. .+.|...|+|.|++-|-.....+ ..++ .+..++..|++++.+++.
T Consensus 82 ~~a~~i~~V~PYl~YaRQDr~~~~~e~isak~~a~ll~~~g~d~vit~D~H~~~~~-~~f~~p~~~l~~~p~l~~~i~~~ 160 (320)
T PRK02269 82 ASAESINVVMPYYGYARQDRKARSREPITSKLVANMLEVAGVDRLLTVDLHAAQIQ-GFFDIPVDHLMGAPLIADYFDRR 160 (320)
T ss_pred hCCCeEEEEEeccccchhhcccCCCCCchHHHHHHHHhhcCCCEEEEECCChHHHh-ccccCCchhhhhHHHHHHHHHHh
Confidence 9999998887431 112222 33444558999999887643211 1122 355678999999999764
No 85
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.44 E-value=0.0053 Score=59.93 Aligned_cols=132 Identities=11% Similarity=0.119 Sum_probs=90.6
Q ss_pred CCCchhhHHHHHHHcCCcEEEEEEeecCCCceEEEEeecCCCCCEEEEEecccCC-hH---HHHHHHHHHHhcCCCEEEE
Q psy17482 206 DAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMADT-CG---TICHAAEKLMEAGATKVYA 281 (353)
Q Consensus 206 d~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~v~~~~~~gdv~Gk~VlIVDDII~T-G~---Tl~~aa~~Lk~~GA~~V~~ 281 (353)
-.+...+|..+|+.||.++.-+..++-.+|+.. ..+..++.|++|+||=++... -. -+.-.+++|+++||++|.+
T Consensus 6 ~~~~~~la~~ia~~lg~~~~~~~~~~FpdGE~~-vri~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~alr~~ga~~i~l 84 (309)
T PRK01259 6 GNANPELAEKIAKYLGIPLGKASVGRFSDGEIS-VEINENVRGKDVFIIQSTCAPTNDNLMELLIMIDALKRASAGRITA 84 (309)
T ss_pred CCCCHHHHHHHHHHhCCceeeeEEEECCCCCEE-EEeCCCCCCCEEEEECCCCCCCcHHHHHHHHHHHHHHHcCCceEEE
Confidence 456678999999999999877766776777753 345678999999999765322 22 2556788999999999998
Q ss_pred EEEec-------------cCChhH-HHHHhhcCCCEEEEecCCCCCCCCCCCCCeeEEehHHHHHHHHHHH
Q psy17482 282 ILTHG-------------IFSGPA-INRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRRT 338 (353)
Q Consensus 282 ~~tHg-------------lfs~~a-~~~l~~s~id~ii~TnTi~~~~~~~~~~ki~~lsva~lla~~i~~~ 338 (353)
+.-+- .++-.. .+.|...++|.|++-|-.....+.-..-.+..++-.|++++.+++.
T Consensus 85 ViPYl~YsRQDr~~~~ge~isak~~a~lL~~~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~l~~~i~~~ 155 (309)
T PRK01259 85 VIPYFGYARQDRKARSRVPITAKLVANLLETAGADRVLTMDLHADQIQGFFDIPVDNLYGSPILLEDIKQK 155 (309)
T ss_pred EeeccccchhhhhhccCCCchHHHHHHHHhhcCCCEEEEEcCChHHHcCcCCCCceeeeecHHHHHHHHhc
Confidence 87431 112122 2334445899999988764321111112467788899999999764
No 86
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.37 E-value=0.0079 Score=59.36 Aligned_cols=135 Identities=16% Similarity=0.157 Sum_probs=93.2
Q ss_pred EEEecCCCchhhHHHHHHHcCCcEEEEEEeecCCCceEEEEeecCCCCCEEEEEecccCC-hHH---HHHHHHHHHhcCC
Q psy17482 201 IIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMADT-CGT---ICHAAEKLMEAGA 276 (353)
Q Consensus 201 vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~v~~~~~~gdv~Gk~VlIVDDII~T-G~T---l~~aa~~Lk~~GA 276 (353)
.++-.-.+...+|..+|+.||.++.-+..+|-.+|+.. ..+..++.|++|+||=++... ... +.-.+.+|+++||
T Consensus 10 ~~i~~~~~~~~La~~ia~~lg~~l~~~~~~~FpdGE~~-v~i~~~vrg~dV~ivqs~~~p~nd~l~eLll~~~alr~~~a 88 (332)
T PRK00553 10 HVIFSLSKAKKLVDSICRKLSMKPGEIVIQKFADGETY-IRFDESVRNKDVVIFQSTCSPVNDSLMELLIAIDALKRGSA 88 (332)
T ss_pred eEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEE-EEECCCCCCCEEEEEcCCCCCCchHHHHHHHHHHHHHHcCC
Confidence 34444456788999999999999887777777778753 356678999999999887543 222 4567789999999
Q ss_pred CEEEEEEEe--------------ccCChhHHHHHhhcCCCEEEEecCCCCCCCCCCC-CCeeEEehHHHHHHHHHH
Q psy17482 277 TKVYAILTH--------------GIFSGPAINRINNACFEAVVVTNTIPQDGHMKDC-TKIRCIDVSMMFAEAVRR 337 (353)
Q Consensus 277 ~~V~~~~tH--------------glfs~~a~~~l~~s~id~ii~TnTi~~~~~~~~~-~ki~~lsva~lla~~i~~ 337 (353)
++|.++.-+ ++-.+-..+.|...|+|.|++-|-....-+ ..+ -.+.-++-.+++++.++.
T Consensus 89 ~~i~~ViPYl~YaRQDr~~~~~e~isak~vA~ll~~~g~d~vit~DlH~~~i~-~~F~ipv~~l~a~~~~~~~~~~ 163 (332)
T PRK00553 89 KSITAILPYYGYARQDRKTAGREPITSKLVADLLTKAGVTRVTLTDIHSDQTQ-GFFDIPVDILRTYHVFLSRVLE 163 (332)
T ss_pred CeEEEEeeccccchhhcccCCCCCccHHHHHHHHHhcCCCEEEEEeCChHHHH-hhcCCCcceeechHHHHHHHHH
Confidence 999888743 111122234445568999999887643211 111 135567788999998865
No 87
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.37 E-value=0.0098 Score=58.46 Aligned_cols=137 Identities=11% Similarity=0.076 Sum_probs=95.3
Q ss_pred eEEEecCCCchhhHHHHHHHcCCcEEEEEEeecCCCceEEEEeecCCCCCEEEEEecccCC-hHH---HHHHHHHHHhcC
Q psy17482 200 SIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMADT-CGT---ICHAAEKLMEAG 275 (353)
Q Consensus 200 ~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~v~~~~~~gdv~Gk~VlIVDDII~T-G~T---l~~aa~~Lk~~G 275 (353)
.+++-.-.+...+|..+|+.||+++..+...|-.+|+.. ..+..++.|++|+||-..... -.. +...+++|+++|
T Consensus 9 ~~~i~~~~~~~~la~~ia~~lg~~l~~~~~~~FpdGE~~-v~i~~~v~g~dV~ii~s~~~~~nd~l~eLll~~~alr~~~ 87 (323)
T PRK02458 9 QIKLFSLNSNLEIAEKIAQAAGVPLGKLSSRQFSDGEIM-INIEESVRGDDIYIIQSTSFPVNDHLWELLIMIDACKRAS 87 (323)
T ss_pred CeEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEE-EEecCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHcC
Confidence 345555567789999999999999887777777778753 355678999999999876432 223 445678899999
Q ss_pred CCEEEEEEEec-------------cCChhHH-HHHhhcCCCEEEEecCCCCCCCCCCCC-CeeEEehHHHHHHHHHHH
Q psy17482 276 ATKVYAILTHG-------------IFSGPAI-NRINNACFEAVVVTNTIPQDGHMKDCT-KIRCIDVSMMFAEAVRRT 338 (353)
Q Consensus 276 A~~V~~~~tHg-------------lfs~~a~-~~l~~s~id~ii~TnTi~~~~~~~~~~-ki~~lsva~lla~~i~~~ 338 (353)
|++|.++.-.- .++-... +.|...++|+|++-|-....-+ ..++ .+..++..|++++.++..
T Consensus 88 a~~i~lViPYl~YaRQDr~~~~ge~isak~~a~lL~~~g~d~vitvD~H~~~i~-~~F~~p~~nl~~~p~~~~~l~~~ 164 (323)
T PRK02458 88 ANTVNVVLPYFGYARQDRIAKPREPITAKLVANMLVKAGVDRVLTLDLHAVQVQ-GFFDIPVDNLFTVPLFAKHYCKK 164 (323)
T ss_pred CceEEEEEeccccchhhcccCCCCCchHHHHHHHHhhcCCCeEEEEecCcHHhh-ccccCCceEEEEHHHHHHHHHHh
Confidence 99998887431 1222233 3344458999999887632211 1122 467888999999999764
No 88
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=97.23 E-value=0.0073 Score=61.48 Aligned_cols=137 Identities=13% Similarity=0.169 Sum_probs=94.6
Q ss_pred CCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeecCCCceEEEEeecCCCCCEEEEEecccCC-hH---HHHHHHHHHHh
Q psy17482 198 KNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMADT-CG---TICHAAEKLME 273 (353)
Q Consensus 198 ~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~v~~~~~~gdv~Gk~VlIVDDII~T-G~---Tl~~aa~~Lk~ 273 (353)
++.+|+ .-.+...+|..+|+.||+++.-+...|-.+|++.. .+..++.|++|+||-.+... -. -+.-.+++|++
T Consensus 118 ~~m~I~-sgs~~~~LA~~IA~~Lg~~l~~~~~~rFpDGE~~V-ri~e~VrG~dV~IVqS~~~pvNd~LmELLllidAlr~ 195 (439)
T PTZ00145 118 ENAILF-SGSSNPLLSKNIADHLGTILGRVHLKRFADGEVSM-QFLESIRGKDVYIIQPTCPPVNENLIELLLMISTCRR 195 (439)
T ss_pred CCeEEE-ECCCCHHHHHHHHHHhCCCceeeEEEECCCCCEEE-EECCCcCCCeEEEEecCCCCCcHHHHHHHHHHHHHHH
Confidence 344444 45677899999999999998877777777787643 46678999999999986543 22 24557789999
Q ss_pred cCCCEEEEEEEe--------------ccCChhHHHHHhhcCCCEEEEecCCCCCCCCCCC---CCeeEEehHHHHHHHHH
Q psy17482 274 AGATKVYAILTH--------------GIFSGPAINRINNACFEAVVVTNTIPQDGHMKDC---TKIRCIDVSMMFAEAVR 336 (353)
Q Consensus 274 ~GA~~V~~~~tH--------------glfs~~a~~~l~~s~id~ii~TnTi~~~~~~~~~---~ki~~lsva~lla~~i~ 336 (353)
+||++|.++.-+ ++-.+-..+.|...|+|.|++-|-....-+ ..+ -.+..++..+++++.++
T Consensus 196 agAkrItlViPYl~YaRQDR~~~~gepIsak~vA~lL~~~G~d~VitvDlHs~~i~-~fF~~~iPvdnl~a~~~~a~~i~ 274 (439)
T PTZ00145 196 ASAKKITAVIPYYGYARQDRKLSSRVPISAADVARMIEAMGVDRVVAIDLHSGQIQ-GFFGPRVPVDNLEAQLIGLDYFT 274 (439)
T ss_pred hccCeEEEEeecccchheecccCCCCChhHHHHHHHHHHcCCCeEEEEecChHHHH-hhcCCCcccccccccHHHHHHHh
Confidence 999999998843 111122334455568999999887643211 112 23556677888888886
Q ss_pred H
Q psy17482 337 R 337 (353)
Q Consensus 337 ~ 337 (353)
.
T Consensus 275 ~ 275 (439)
T PTZ00145 275 K 275 (439)
T ss_pred h
Confidence 5
No 89
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.23 E-value=0.012 Score=57.83 Aligned_cols=138 Identities=14% Similarity=0.127 Sum_probs=93.7
Q ss_pred CCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeecCCCceEEEEeecCCCCCEEEEEecccCCh----HHHHHHHHHHHh
Q psy17482 198 KNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMADTC----GTICHAAEKLME 273 (353)
Q Consensus 198 ~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~v~~~~~~gdv~Gk~VlIVDDII~TG----~Tl~~aa~~Lk~ 273 (353)
++. ++-.-.+...+|..+|+.||+++.-+...|-.+|+.. ..+..++.|++|+||=...... --+.-.+.+||+
T Consensus 5 ~~~-~i~~g~~~~~La~~ia~~lg~~l~~~~~~~FpdGE~~-v~i~~~v~g~~V~iiqs~~~p~nd~lmeLl~~~~alr~ 82 (319)
T PRK04923 5 RNL-LVFSGNANKPLAQSICKELGVRMGKALVTRFSDGEVQ-VEIEESVRRQEVFVIQPTCAPSAENLMELLVLIDALKR 82 (319)
T ss_pred Cce-EEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEE-EEECCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHH
Confidence 444 4444466788999999999999887777777778753 3556788999999996644321 124566788999
Q ss_pred cCCCEEEEEEEec-------c-------CChhHH-HHHhhcCCCEEEEecCCCCCCCCCCC-CCeeEEehHHHHHHHHHH
Q psy17482 274 AGATKVYAILTHG-------I-------FSGPAI-NRINNACFEAVVVTNTIPQDGHMKDC-TKIRCIDVSMMFAEAVRR 337 (353)
Q Consensus 274 ~GA~~V~~~~tHg-------l-------fs~~a~-~~l~~s~id~ii~TnTi~~~~~~~~~-~ki~~lsva~lla~~i~~ 337 (353)
+||++|.++..+- . ++-... +.|...|+|+|++-|-.....+ ..+ -.+.-++-+++|++.|.+
T Consensus 83 ~~a~~i~~ViPYl~YaRQDr~~~~~~~~isak~va~ll~~~g~d~vitvD~H~~~~~-~~f~~p~~~l~~~~~l~~~i~~ 161 (319)
T PRK04923 83 ASAASVTAVIPYFGYSRQDRRMRSSRVPITAKVAAKMISAMGADRVLTVDLHADQIQ-GFFDVPVDNVYASPLLLADIWR 161 (319)
T ss_pred cCCcEEEEEeeccccccccccccCCCCCccHHHHHHHHHhcCCCEEEEEeCChHHHH-hhcCCCceeeeChHHHHHHHHH
Confidence 9999998877431 1 122223 3344458999999887643211 111 235678889999999965
Q ss_pred H
Q psy17482 338 T 338 (353)
Q Consensus 338 ~ 338 (353)
.
T Consensus 162 ~ 162 (319)
T PRK04923 162 A 162 (319)
T ss_pred h
Confidence 3
No 90
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=97.17 E-value=0.0024 Score=57.91 Aligned_cols=102 Identities=19% Similarity=0.225 Sum_probs=72.5
Q ss_pred ccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeecCC-C-c--eE---------EEEe-ecC-
Q psy17482 181 YAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKA-N-E--VA---------SMVL-VGD- 245 (353)
Q Consensus 181 ~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~-~-~--v~---------~~~~-~gd- 245 (353)
.+...||+.+.+.++ .+.++++-..-+.-....+++.++-...+++..|..- + . .. ...+ ..+
T Consensus 38 ~~~~~La~~~~~~~~--~~~lvIGfAETATgLG~~V~~~~~~~~~ylhTTR~~v~~~~~~~~F~E~HSHAt~h~ly~~~~ 115 (191)
T PF15609_consen 38 DAGRLLAAQVPEALP--GPVLVIGFAETATGLGHGVFDALGAACLYLHTTREPVPGVPPLLEFEEEHSHATDHLLYPPDP 115 (191)
T ss_pred HHHHHHHHHHHHhCC--CCeEEEEEhHHHHHHHHHHHHHhhhccceeeeccccCCCCccceeeeccccccccceecCCCh
Confidence 345677887776653 5789999999999999999999875546777777532 2 0 00 0001 111
Q ss_pred ---CCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEE
Q psy17482 246 ---VKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILT 284 (353)
Q Consensus 246 ---v~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~t 284 (353)
-..+.+++|||=||||.|+...++.|++.-+.+=|++++
T Consensus 116 ~~l~~~~~lVLVDDEiSTG~T~lnli~al~~~~p~~~yvvas 157 (191)
T PF15609_consen 116 DLLRNARTLVLVDDEISTGNTFLNLIRALHAKYPRKRYVVAS 157 (191)
T ss_pred HHhcCCCCEEEEecCccchHHHHHHHHHHHHhCCCceEEEEE
Confidence 236799999999999999999999999887765555554
No 91
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=97.14 E-value=0.019 Score=55.93 Aligned_cols=134 Identities=19% Similarity=0.168 Sum_probs=93.1
Q ss_pred ecCCCchhhHHHHHHHcCCcEEEEEEeecCCCceEEEEeecCCCCCEEEEEecccCChH---HHHHHHHHHHhcCCCEEE
Q psy17482 204 SPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMADTCG---TICHAAEKLMEAGATKVY 280 (353)
Q Consensus 204 spd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~v~~~~~~gdv~Gk~VlIVDDII~TG~---Tl~~aa~~Lk~~GA~~V~ 280 (353)
-.-.+...+|..+|+.||+++......|-.+|+.. ..+..++.|++|+||-.+..--. -+.-.+++||++||++|.
T Consensus 6 ~~~~~~~~la~~ia~~lg~~~~~~~~~~F~dGE~~-v~i~~~v~g~~V~ivqs~~~~n~~l~elll~~~alr~~~a~~i~ 84 (301)
T PRK07199 6 LALPGNEAAAGRLAAALGVEVGRIELHRFPDGESY-VRLDSPVAGRTVVLVCSLDRPDEKLLPLLFAAEAARELGARRVG 84 (301)
T ss_pred EECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEE-EEECCCCCCCEEEEECCCCCCcHHHHHHHHHHHHHHHcCCCeEE
Confidence 33456788999999999999887777777778763 35567899999999998764322 245567889999999998
Q ss_pred EEEEec-------------cCChhHHHHHhhcCCCEEEEecCCCCC-CCCC-CC-CCeeEEehHHHHHHHHHHH
Q psy17482 281 AILTHG-------------IFSGPAINRINNACFEAVVVTNTIPQD-GHMK-DC-TKIRCIDVSMMFAEAVRRT 338 (353)
Q Consensus 281 ~~~tHg-------------lfs~~a~~~l~~s~id~ii~TnTi~~~-~~~~-~~-~ki~~lsva~lla~~i~~~ 338 (353)
++..+- .++-....+|-++++|+|++-|-..+. .+.. .+ -.+..++..+.+++.|+..
T Consensus 85 ~ViPY~~YaRqDr~~~~ge~isak~vA~ll~~~~d~vit~DlH~~~~~~~~~~f~ip~~nl~~~~~la~~l~~~ 158 (301)
T PRK07199 85 LVAPYLAYMRQDIAFHPGEAISQRHFARLLSGSFDRLVTVDPHLHRYPSLSEVYPIPAVVLSAAPAIAAWIRAH 158 (301)
T ss_pred EEeecccccccccccCCCCCccHHHHHHHHHhhcCeEEEEeccchhhHHhcCcccCCccccchHHHHHHHHHhc
Confidence 887431 223334455555789999998866311 1111 11 1234578899999999763
No 92
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=97.11 E-value=0.012 Score=57.41 Aligned_cols=126 Identities=15% Similarity=0.097 Sum_probs=88.2
Q ss_pred hhHHHHHHHcCCcEEEEEEeecCCCceEEEEeecCCCCCEEEEEecccCC-h---HHHHHHHHHHHhcCCCEEEEEEEe-
Q psy17482 211 KRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMADT-C---GTICHAAEKLMEAGATKVYAILTH- 285 (353)
Q Consensus 211 ~ra~~la~~Lg~~~~~l~K~R~~~~~v~~~~~~gdv~Gk~VlIVDDII~T-G---~Tl~~aa~~Lk~~GA~~V~~~~tH- 285 (353)
.+|..+|+.||+++..+..+|-.+|+... .+..++.|++|+||-..... - --+.-.+++||++||++|.++.-+
T Consensus 2 ~lA~~ia~~lg~~l~~~~~~~FpdGE~~v-~i~~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~~~a~~i~~ViPYl 80 (302)
T PLN02369 2 ALSQEIACYLGLELGKITIKRFADGEIYV-QLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKRITAVIPYF 80 (302)
T ss_pred hHHHHHHHHhCCceeeeEEEECCCCCEEE-EECCCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 46899999999998877777777787643 55678999999999986632 1 224567889999999999887743
Q ss_pred -------------ccCChhHHHHHhhcCCCEEEEecCCCCCCCCCCCC-CeeEEehHHHHHHHHHHH
Q psy17482 286 -------------GIFSGPAINRINNACFEAVVVTNTIPQDGHMKDCT-KIRCIDVSMMFAEAVRRT 338 (353)
Q Consensus 286 -------------glfs~~a~~~l~~s~id~ii~TnTi~~~~~~~~~~-ki~~lsva~lla~~i~~~ 338 (353)
++-.+-..+.|...|+++|++-|-.....+ .-++ .+..++..+.+++.|...
T Consensus 81 ~YsRQDr~~~~~e~isak~va~lL~~~g~d~vi~vDlHs~~i~-~~F~ip~~~l~~~~~~~~~i~~~ 146 (302)
T PLN02369 81 GYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSM-GYFDIPVDHVYGQPVILDYLASK 146 (302)
T ss_pred cccccccccCCCCCchHHHHHHHHHhcCCCEEEEEECCchHHh-hccCCceecccchHHHHHHHHHh
Confidence 112222344455568999998876643211 1122 345678889999999764
No 93
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=97.10 E-value=0.016 Score=56.43 Aligned_cols=129 Identities=14% Similarity=0.204 Sum_probs=94.3
Q ss_pred CCchhhHHHHHHHcCCcEEEEEEeecCCCceEEEEeecCCCCCEEEEEecccCChH-H---HHHHHHHHHhcCCCEEEEE
Q psy17482 207 AGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMADTCG-T---ICHAAEKLMEAGATKVYAI 282 (353)
Q Consensus 207 ~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~v~~~~~~gdv~Gk~VlIVDDII~TG~-T---l~~aa~~Lk~~GA~~V~~~ 282 (353)
...-.+|..+|+.||.++.-..-.|-.+|+.. ..+..++.|++|.|+........ . +.-.+++||++||++|.++
T Consensus 11 ~s~~~La~~ia~~l~~~l~~~~~~rF~DGE~~-V~i~EsVrg~dVfI~qs~~~pvnd~lmELLi~idA~k~asA~~It~V 89 (314)
T COG0462 11 SSNPELAEKIAKRLGIPLGKVEVKRFPDGEIY-VRIEESVRGKDVFIIQSTSPPVNDNLMELLIMIDALKRASAKRITAV 89 (314)
T ss_pred CCCHHHHHHHHHHhCCCcccceeEEcCCCcEE-EEecccccCCeEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCceEEEE
Confidence 55678899999999999887777777777763 46778999999999988877444 2 4456788999999999998
Q ss_pred EEeccCC----------------hhHHHHHhhcCCCEEEEecCCCCCCCCCCCC-CeeEEehHHHHHHHHHHHh
Q psy17482 283 LTHGIFS----------------GPAINRINNACFEAVVVTNTIPQDGHMKDCT-KIRCIDVSMMFAEAVRRTH 339 (353)
Q Consensus 283 ~tHglfs----------------~~a~~~l~~s~id~ii~TnTi~~~~~~~~~~-ki~~lsva~lla~~i~~~~ 339 (353)
. |.|. +-..+.|...|+++|++.|-....-+. .++ .+.-+.-.|++++.++...
T Consensus 90 i--PY~gYARQDk~~~~repIsaklvA~lL~~aG~drv~TvDlH~~qiqg-fFdipvdnl~a~p~l~~~~~~~~ 160 (314)
T COG0462 90 I--PYFGYARQDKAFKPREPISAKLVANLLETAGADRVLTVDLHAPQIQG-FFDIPVDNLYAAPLLAEYIREKY 160 (314)
T ss_pred e--ecchhhccCcccCCCCCEeHHHHHHHHHHcCCCeEEEEcCCchhhcc-cCCCccccccchHHHHHHHHHhc
Confidence 7 3332 112345566799999999987443221 111 4555668899999998864
No 94
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.97 E-value=0.037 Score=53.41 Aligned_cols=128 Identities=16% Similarity=0.216 Sum_probs=88.8
Q ss_pred CCchhhHHHHHHHcCCcEEEEEEeecCCCceEEEEeecCCCCCEEEEEecccCChH---HHHHHHHHHHhcCCCEEEEEE
Q psy17482 207 AGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMADTCG---TICHAAEKLMEAGATKVYAIL 283 (353)
Q Consensus 207 ~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~v~~~~~~gdv~Gk~VlIVDDII~TG~---Tl~~aa~~Lk~~GA~~V~~~~ 283 (353)
.+...+|..+|+.||.++.-+...|-.+|+.. ..+..++.|++|+|+-..-+-.. -+.-.+++|+++||++|.++.
T Consensus 6 ~~~~~la~~ia~~l~~~~~~~~~~~FpdGE~~-v~i~~~v~g~~v~i~~~~~~~~d~l~ell~~~~alr~~ga~~i~~v~ 84 (285)
T PRK00934 6 SASQLLASEVARLLNTELALVETKRFPDGELY-VRILGEIDGEDVVIISTTYPQDENLVELLLLIDALRDEGAKSITLVI 84 (285)
T ss_pred CCCHHHHHHHHHHHCCceEeeEEEECCCCCEE-EEECCCcCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 34567999999999999988887787778763 35567899999999887543333 245577899999999999887
Q ss_pred Eec-------------cCChhHHHH-HhhcCCCEEEEecCCCCCCC-CCCCCCeeEEehHHHHHHHHHH
Q psy17482 284 THG-------------IFSGPAINR-INNACFEAVVVTNTIPQDGH-MKDCTKIRCIDVSMMFAEAVRR 337 (353)
Q Consensus 284 tHg-------------lfs~~a~~~-l~~s~id~ii~TnTi~~~~~-~~~~~ki~~lsva~lla~~i~~ 337 (353)
.+- .++-....+ |...+ |.|++-|-....-+ .-.. .+..++.++.|++.|+.
T Consensus 85 PY~~YaRqDr~~~~ge~isak~~a~ll~~~~-d~vitvD~H~~~~~~~f~~-~~~~l~a~~~la~~i~~ 151 (285)
T PRK00934 85 PYLGYARQDKRFKPGEPISARAIAKIISAYY-DRIITINIHEPSILEFFPI-PFINLDAAPLIAEYIGD 151 (285)
T ss_pred cCCcccccccccCCCCCccHHHHHHHHHHhc-CEEEEEcCChHHHcCcCCC-cEeEeecHHHHHHHHHh
Confidence 431 222233333 44445 99999887643211 1122 36678889999999954
No 95
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=96.77 E-value=0.029 Score=47.05 Aligned_cols=86 Identities=12% Similarity=0.223 Sum_probs=58.7
Q ss_pred EEecCCCchhhHHHHHHHcCCcEEEEEEeecCCCceEEEEeecCCCCCEEEEEecccCC--hH--HHHHHHHHHHhcCCC
Q psy17482 202 IVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMADT--CG--TICHAAEKLMEAGAT 277 (353)
Q Consensus 202 vVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~v~~~~~~gdv~Gk~VlIVDDII~T--G~--Tl~~aa~~Lk~~GA~ 277 (353)
+|-.-.+...+|+.+|+.||.++.-+.-.|-.+|+.. ..+.++++|++|+||=++... -. -+.-.++++++.||+
T Consensus 2 ~I~~g~~~~~La~~ia~~L~~~~~~~~~~~F~dGE~~-v~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~~a~ 80 (116)
T PF13793_consen 2 VIFSGSSSQDLAERIAEALGIPLGKVETKRFPDGETY-VRIPESVRGKDVFIIQSTSPPVNDNLMELLLLIDALRRAGAK 80 (116)
T ss_dssp EEEESSSGHHHHHHHHHHTTS-EE-EEEEE-TTS-EE-EEESS--TTSEEEEE---SSSHHHHHHHHHHHHHHHHHTTBS
T ss_pred EEEECCCCHHHHHHHHHHhCCceeeeEEEEcCCCCEE-EEecccccCCceEEEEecCCchhHHHHHHHHHHHHHHHcCCc
Confidence 3445567788999999999999887776776677753 356778999999999998875 22 345678899999999
Q ss_pred EEEEEEEeccCCh
Q psy17482 278 KVYAILTHGIFSG 290 (353)
Q Consensus 278 ~V~~~~tHglfs~ 290 (353)
+|.++. |-|.-
T Consensus 81 ~i~~Vi--PYl~Y 91 (116)
T PF13793_consen 81 RITLVI--PYLPY 91 (116)
T ss_dssp EEEEEE--SS-TT
T ss_pred EEEEec--cchhh
Confidence 999987 55643
No 96
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=96.77 E-value=0.054 Score=53.34 Aligned_cols=138 Identities=6% Similarity=-0.024 Sum_probs=92.5
Q ss_pred CeEEEecCCCchhhHHHHHHHc-CCcEEEEEEeecCCCceEEE-EeecCCCCCEEEEEecccCChHH---HHHHHHHHHh
Q psy17482 199 NSIIVSPDAGGAKRVTSIADRL-NVEFALIHKERKKANEVASM-VLVGDVKDRVAILVDDMADTCGT---ICHAAEKLME 273 (353)
Q Consensus 199 ~~vvVspd~Gg~~ra~~la~~L-g~~~~~l~K~R~~~~~v~~~-~~~gdv~Gk~VlIVDDII~TG~T---l~~aa~~Lk~ 273 (353)
+.+++-.-.+...+|..+|+.+ |.++.-++.+|-.+|+.+.. .+..++.|++|+||=-+.+. .. +.-++.+|++
T Consensus 15 ~~~~i~~g~~~~~LA~~ia~~l~g~~l~~~~~~~FpDGE~~v~v~~~~~vrg~~V~ivqs~~~p-d~lmELLl~~dAlr~ 93 (326)
T PLN02297 15 KQVHLFYCEETEELARKIAAESDAIELGSINWRKFPDGFPNLFINNAHGIRGQHVAFLASFSSP-AVIFEQLSVIYALPK 93 (326)
T ss_pred CCeEEEECCCCHHHHHHHHHHhCCCceeeeEEEECCCCCEEEEEcCCCCcCCCeEEEECCCCCC-hHHHHHHHHHHHHHH
Confidence 3455555667789999999996 89988777777777865443 34578999999999775544 33 3456788999
Q ss_pred cCCCEEEEEEEec-------cCC------hhHH-HHHhh-----cCCCEEEEecCCCCCCCCCCCC-Cee--EEehHHHH
Q psy17482 274 AGATKVYAILTHG-------IFS------GPAI-NRINN-----ACFEAVVVTNTIPQDGHMKDCT-KIR--CIDVSMMF 331 (353)
Q Consensus 274 ~GA~~V~~~~tHg-------lfs------~~a~-~~l~~-----s~id~ii~TnTi~~~~~~~~~~-ki~--~lsva~ll 331 (353)
+||++|.++.-+- .|. -... +.|.. +++|.|++-|-.....+ ..++ .+. .++..|+|
T Consensus 94 ~ga~~i~~ViPY~~YaRQDr~~~~ge~isak~vA~ll~~~~~~~~g~d~vitvDlH~~~~~-~fF~~~~~~l~l~a~~~l 172 (326)
T PLN02297 94 LFVASFTLVLPFFPTGTSERVEREGDVATAFTLARILSNIPISRGGPTSLVIFDIHALQER-FYFGDNVLPCFESGIPLL 172 (326)
T ss_pred cCCCEEEEEeeCChhhcCCCCCCCCCCchHHHHHHHHhcccccccCCCEEEEEeCCChHHC-CccCCcccchhhccHHHH
Confidence 9999999988431 111 1223 33444 48999999887643211 1111 222 23678999
Q ss_pred HHHHHHH
Q psy17482 332 AEAVRRT 338 (353)
Q Consensus 332 a~~i~~~ 338 (353)
++.|+..
T Consensus 173 ~~~i~~~ 179 (326)
T PLN02297 173 KKRLQQL 179 (326)
T ss_pred HHHHHhc
Confidence 9999764
No 97
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=96.34 E-value=0.13 Score=51.67 Aligned_cols=136 Identities=8% Similarity=0.097 Sum_probs=87.9
Q ss_pred CeEEEecCCCchhhHHHHHHHc--------------------CCc--EEEEEEeecCCCceEEEEeecCCCCCEEEEEec
Q psy17482 199 NSIIVSPDAGGAKRVTSIADRL--------------------NVE--FALIHKERKKANEVASMVLVGDVKDRVAILVDD 256 (353)
Q Consensus 199 ~~vvVspd~Gg~~ra~~la~~L--------------------g~~--~~~l~K~R~~~~~v~~~~~~gdv~Gk~VlIVDD 256 (353)
+..+++ -.++..+|..+|+.| |.+ +.-+...|-.+|+.. ..+..++.|++|+||-+
T Consensus 8 ~~~i~~-~~~~~~la~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~FpDGE~~-vri~~~Vrg~dV~ivqs 85 (382)
T PRK06827 8 SLGIIA-LPSCRELADKVDEHLVRIRERKENENIESLAFKGYSRESYLIPAKFIRFSNGEAK-GEILESVRGKDIYILQD 85 (382)
T ss_pred ceEEEE-CCCCHHHHHHHHHHHHHhhhhccccccccccccccCCcceeeeeEEEECCCCCEE-EEECCCCCCCeEEEEec
Confidence 334444 556788899999988 533 555555565667753 35667899999999999
Q ss_pred ccC---------------ChHHHHH---HHHHHHhcCCCEEEEEEEec------------cCChhH-HHHHhhcCCCEEE
Q psy17482 257 MAD---------------TCGTICH---AAEKLMEAGATKVYAILTHG------------IFSGPA-INRINNACFEAVV 305 (353)
Q Consensus 257 II~---------------TG~Tl~~---aa~~Lk~~GA~~V~~~~tHg------------lfs~~a-~~~l~~s~id~ii 305 (353)
+.. .-..+.+ ++++|+ +||++|.++.-+- .++-.. .+.|+..|+|+|+
T Consensus 86 ~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA~rIt~ViPY~~YaRQDr~~~~e~itak~vA~lL~~~G~d~vi 164 (382)
T PRK06827 86 VGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKARRITVIMPFLYESRQHKRKGRESLDCALALQELEELGVDNII 164 (382)
T ss_pred CCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCCCeEEEEeecccccccccccCCCCccHHHHHHHHHHcCCCeEE
Confidence 752 2333444 889999 9999999887431 111112 2334445899999
Q ss_pred EecCCCCCCCCCCC--CCeeEEehHHHHHHHHHHH
Q psy17482 306 VTNTIPQDGHMKDC--TKIRCIDVSMMFAEAVRRT 338 (353)
Q Consensus 306 ~TnTi~~~~~~~~~--~ki~~lsva~lla~~i~~~ 338 (353)
+-|-....-+ ..+ ..+.-++-++.+++.++..
T Consensus 165 tvDlHs~~i~-~~F~~~pvdnl~a~~~l~~~i~~~ 198 (382)
T PRK06827 165 TFDAHDPRIE-NAIPLMGFENLYPSYQIIKALLKN 198 (382)
T ss_pred EecCChHHhc-ccCCCCCcCCcCchHHHHHHHHHh
Confidence 9887643211 122 2466677788888888643
No 98
>KOG1017|consensus
Probab=91.45 E-value=1.1 Score=41.19 Aligned_cols=68 Identities=21% Similarity=0.349 Sum_probs=47.1
Q ss_pred eecCCCCCEEEEEecccCChHHHHHHHHHHHhcCCCE--EEEEEEeccCCh-hHHHHHhhcCCC-EEEEecCCCC
Q psy17482 242 LVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATK--VYAILTHGIFSG-PAINRINNACFE-AVVVTNTIPQ 312 (353)
Q Consensus 242 ~~gdv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~--V~~~~tHglfs~-~a~~~l~~s~id-~ii~TnTi~~ 312 (353)
+..|+--|+|++.=-+++||.|+.+|.+.|+++|... |++.. +|.. -+.+.+-+.... .|++++-.|.
T Consensus 183 fppDI~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp~s~IiL~s---LF~tP~gak~i~~~fP~itiltseihpv 254 (267)
T KOG1017|consen 183 FPPDITSRRVLLMYPIISTGNTVCKAVEVLKEHGVPDSNIILVS---LFITPTGAKNITRKFPYITILTSEIHPV 254 (267)
T ss_pred cCCcccceeEEEEeeeecCCccHHHHHHHHHHcCCCcccEEEEE---eeecchhhHHHHHhCCeEEEEeecceec
Confidence 4668889999999999999999999999999999763 44443 5543 344444443322 3444444444
No 99
>PF15610 PRTase_3: PRTase ComF-like
Probab=90.25 E-value=4.2 Score=39.02 Aligned_cols=37 Identities=19% Similarity=0.163 Sum_probs=33.2
Q ss_pred CCCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEE
Q psy17482 245 DVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYA 281 (353)
Q Consensus 245 dv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~ 281 (353)
.++||.||.+|||--||++=....+.+++.|++....
T Consensus 135 ~l~gk~lIflDDIkITGshE~~V~~~~~~~~~~~~~~ 171 (274)
T PF15610_consen 135 FLSGKHLIFLDDIKITGSHEDKVRKILKEYGLENDFI 171 (274)
T ss_pred HhCCcEEEEeccEEecCcHHHHHHHHHHHcCccccEE
Confidence 4799999999999999999999999999999987333
No 100
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=85.70 E-value=3.3 Score=37.11 Aligned_cols=79 Identities=15% Similarity=0.098 Sum_probs=49.9
Q ss_pred hccCHHHHHHHHHHhCCCc-cCCCccccCCCC----ceeEE--eCCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhh
Q psy17482 19 RKASHFFAKQNAEYKGVQR-YIPPRLSPEDRG----QIGVE--IGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIA 91 (353)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~dG----E~~v~--i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~ 91 (353)
.+..-.+|..+|+.||++. ..-...++..++ +.... ...+++|++|+||-... |.=--|.-+++.|++.
T Consensus 48 ~~gg~~~A~~La~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~gk~VLIVDDIi----dTG~Tl~~~~~~Lk~~ 123 (181)
T PRK09162 48 MGGGLVFTGQLLPRLDFPLEFDYLHATRYRNETTGGELVWKVKPRESLKGRTVLVVDDIL----DEGHTLAAIRDRCLEM 123 (181)
T ss_pred CCCcHHHHHHHHHHcCCCcccCEEEEEecCCCccCCceeEecCCCCCCCCCEEEEEcccc----CcHHHHHHHHHHHHhC
Confidence 3456788999999999872 112222333332 22222 34579999999996432 2222344667788999
Q ss_pred CCCeEEEEee
Q psy17482 92 SASRVTAVIP 101 (353)
Q Consensus 92 ~a~~i~~viP 101 (353)
||++|.+..-
T Consensus 124 Ga~~V~~avL 133 (181)
T PRK09162 124 GAAEVYSAVL 133 (181)
T ss_pred CCCEEEEEEE
Confidence 9999987753
No 101
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=84.84 E-value=3.4 Score=37.52 Aligned_cols=99 Identities=15% Similarity=0.097 Sum_probs=60.6
Q ss_pred EEeCCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCeEEEEeeCCCccccccccCCCCCCCCchhHHHHhhhcc
Q psy17482 53 VEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKGNGNGKKEADEREMIKKNN 132 (353)
Q Consensus 53 v~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~i~~viPY~~YsRqDr~~~~~~~~~~~~~~~~~~~~~~ 132 (353)
+.+-.+|.|++++|+..+.. .-=-+.-.++.||+.||++|.++.-.-=++
T Consensus 75 ~~vVGDV~gk~~IIvDDiId----tg~Tl~~aA~~Lk~~GA~~V~~~aTHgvfs-------------------------- 124 (184)
T PF14572_consen 75 MNVVGDVKGKICIIVDDIID----TGGTLIKAAELLKERGAKKVYACATHGVFS-------------------------- 124 (184)
T ss_dssp EEEES--TTSEEEEEEEEES----STHHHHHHHHHHHHTTESEEEEEEEEE-----------------------------
T ss_pred eEEEEEccCCeEeeeccccc----chHHHHHHHHHHHHcCCCEEEEEEeCcccC--------------------------
Confidence 55668999999999986532 223466788899999999999887543222
Q ss_pred ccccCCCCcchHHHHHHHHHHcCCCEEEEEcCChhHHhcccCccccccccHHHHHHHHHhh
Q psy17482 133 EWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKEN 193 (353)
Q Consensus 133 ~~kf~~~e~isak~vA~lL~~~g~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~i~~~ 193 (353)
+. -.+.|+.+.+|.|++-|-.....+..-.-....++-++.|++.|+.-
T Consensus 125 ------~~------A~~~l~~s~Id~vvvTnTIp~~~~~~~~~Ki~vldis~llaeaI~ri 173 (184)
T PF14572_consen 125 ------GD------APERLEESPIDEVVVTNTIPQEEQKLQCPKIKVLDISPLLAEAIRRI 173 (184)
T ss_dssp ------TT------HHHHHHHSSESEEEEETTS--HHHHHH-TTEEEE--HHHHHHHHHHH
T ss_pred ------ch------HHHHHhhcCCeEEEEeccccCchhhhcCCCEeEeehHHHHHHHHHHH
Confidence 11 12456777899999998532222111112345567789999988753
No 102
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=78.51 E-value=6.9 Score=40.72 Aligned_cols=89 Identities=19% Similarity=0.196 Sum_probs=54.4
Q ss_pred hccCHHHHHHHHHHhCCCccCCCcc------ccC--CC---Ccee----EE-eCCccCCceEEEEecCCCCCchHHHHHH
Q psy17482 19 RKASHFFAKQNAEYKGVQRYIPPRL------SPE--DR---GQIG----VE-IGESVRGEDVYIVQSGSGEVNDNLMELL 82 (353)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~f--~d---GE~~----v~-i~~~vrg~dv~iiqs~~~~~nd~lmeLl 82 (353)
|++...+|..+|+.+|++ +.+.-+ .+| +. .+.+ .. +.+.++|+.|+||...-. .-.. +-
T Consensus 293 Pnqa~~lA~~la~~lgip-~~~~lvk~~~~~rt~~~~~q~~R~~~vr~~f~~~~~~~~gk~vllVDDvit--tG~T--~~ 367 (484)
T PRK07272 293 PNSSLSAASGYAEESGLP-YEMGLVKNQYVARTFIQPTQELREQGVRMKLSAVSGVVKGKRVVMVDDSIV--RGTT--SR 367 (484)
T ss_pred cHHHHHHHHHHHHHHCCC-cccCeEEEccCCccccCCCHHHHHHHHhhCccccccccCCCEEEEEccccC--chHH--HH
Confidence 455667999999999998 322100 012 11 1111 11 346789999999964211 1122 22
Q ss_pred HHHHHHhhhCCCeEEEEee--------CCCcccccccc
Q psy17482 83 IMINACKIASASRVTAVIP--------CFPYARQDKKD 112 (353)
Q Consensus 83 l~~~a~r~~~a~~i~~viP--------Y~~YsRqDr~~ 112 (353)
-++.+||++||++|.+.+- ||+..++.|..
T Consensus 368 ~~~~~L~~~Ga~~v~~~~~~p~~~~~c~ygid~~~~~~ 405 (484)
T PRK07272 368 RIVQLLKEAGAKEVHVAIASPELKYPCFYGIDIQTRRE 405 (484)
T ss_pred HHHHHHHhcCCcEEEEEEeCCccccChhhhccCcCHHH
Confidence 5678899999999999877 66666666553
No 103
>KOG1448|consensus
Probab=78.41 E-value=11 Score=36.76 Aligned_cols=116 Identities=17% Similarity=0.196 Sum_probs=75.5
Q ss_pred hhHHHHHHHcCCcEEEEEEeecCCCceEEEEeecCCCCCEEEEEecccCC----hHHHHHHHHHHHhcCCCEEEEEEEec
Q psy17482 211 KRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMADT----CGTICHAAEKLMEAGATKVYAILTHG 286 (353)
Q Consensus 211 ~ra~~la~~Lg~~~~~l~K~R~~~~~v~~~~~~gdv~Gk~VlIVDDII~T----G~Tl~~aa~~Lk~~GA~~V~~~~tHg 286 (353)
.+|..++.+||+++.-+.-+|-.+++. .+.+..++.|.+|.|+---+.+ =-++.-.+.+++.+-|++|.++- |
T Consensus 14 ~La~~I~~~lgi~l~~v~~kkf~nge~-~v~i~esvR~~dV~iiqsgsg~ind~lmELLI~I~ac~~asa~~vTaVi--P 90 (316)
T KOG1448|consen 14 ELAERIAARLGIELGKVNLKKFSNGET-SVQIGESVRGEDVYIIQSGSGPINDNLMELLIMINACKRASASRVTAVI--P 90 (316)
T ss_pred HHHHHHHHHhCCCcceeeeEEccCCcE-EEecccccccCcEEEeccCCCcchHHHHHHHHHHHhcchhhhheeEEec--c
Confidence 478899999998876555555556663 4466778999999999433222 12455566778888899988876 4
Q ss_pred cCChhHH----------------HHHhhcCCCEEEEecCCCCCCCCCCCCCeeEEehHHHHHHH
Q psy17482 287 IFSGPAI----------------NRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEA 334 (353)
Q Consensus 287 lfs~~a~----------------~~l~~s~id~ii~TnTi~~~~~~~~~~ki~~lsva~lla~~ 334 (353)
.|.-.-. ..|..+|.|.|++.|-.....+ .+=.+.|.+++++-
T Consensus 91 ~Fpyarq~~k~~~r~~i~aklVanlls~aG~dhvItmDlHa~Q~q-----gfF~ipVdnly~~p 149 (316)
T KOG1448|consen 91 YFPYARQDKKDKSRAPILAKLVANLLSSAGADHVITMDLHASQIQ-----GFFDIPVDNLYAEP 149 (316)
T ss_pred CCccccchhhhhhhhhHHHHHHHhhhhccCCceEEEecccchhhC-----ceeeccchhhccch
Confidence 4442111 1233578999999998755432 34456666666643
No 104
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=77.00 E-value=7 Score=34.69 Aligned_cols=78 Identities=24% Similarity=0.268 Sum_probs=49.3
Q ss_pred hccCHHHHHHHHHHhCCCccCCCccccCCCCceeEEeCCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCeEEE
Q psy17482 19 RKASHFFAKQNAEYKGVQRYIPPRLSPEDRGQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTA 98 (353)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dGE~~v~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~i~~ 98 (353)
....-.+|..+|..||++ +...+-.....|+.....+ +++|+.|+||.-.-. .=--+.-+++++|++||+ |..
T Consensus 64 ~~gGi~~A~~~a~~l~~p-~~~~rK~~k~~g~~~~~~g-~~~g~~VlIVDDvi~----TG~T~~~~~~~l~~~Ga~-v~~ 136 (170)
T PRK13811 64 AVGGVPLAVAVSLAAGKP-YAIIRKEAKDHGKAGLIIG-DVKGKRVLLVEDVTT----SGGSALYGIEQLRAAGAV-VDD 136 (170)
T ss_pred CcCcHHHHHHHHHHHCCC-EEEEecCCCCCCCcceEEc-ccCCCEEEEEEeccc----ccHHHHHHHHHHHHCCCe-EEE
Confidence 335677899999999998 4344433345676554444 589999999974321 111345667888899986 444
Q ss_pred EeeCC
Q psy17482 99 VIPCF 103 (353)
Q Consensus 99 viPY~ 103 (353)
++-.+
T Consensus 137 ~~~~v 141 (170)
T PRK13811 137 VVTVV 141 (170)
T ss_pred EEEEE
Confidence 44333
No 105
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=72.93 E-value=47 Score=29.85 Aligned_cols=113 Identities=27% Similarity=0.353 Sum_probs=70.7
Q ss_pred HHHHHHcCCCEEEEEcCChhHHhcccCccccccccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEEE
Q psy17482 148 ANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALI 227 (353)
Q Consensus 148 A~lL~~~g~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l 227 (353)
.+.|...|+.-|++ |+-+- =+|.++-++.|++-+|+.+--..+-..+|+|- +...|+...++.||+|+.+-
T Consensus 20 ~~~L~~~Gikgvi~-DlDNT------Lv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSN--n~e~RV~~~~~~l~v~fi~~ 90 (175)
T COG2179 20 PDILKAHGIKGVIL-DLDNT------LVPWDNPDATPELRAWLAELKEAGIKVVVVSN--NKESRVARAAEKLGVPFIYR 90 (175)
T ss_pred HHHHHHcCCcEEEE-eccCc------eecccCCCCCHHHHHHHHHHHhcCCEEEEEeC--CCHHHHHhhhhhcCCceeec
Confidence 45677788877665 43211 16788889999999998753211122344444 78889999999999997643
Q ss_pred EEeec-------------CCCceEEE------E-eecCCCCCEEEEEecccCChHHHHHHHH
Q psy17482 228 HKERK-------------KANEVASM------V-LVGDVKDRVAILVDDMADTCGTICHAAE 269 (353)
Q Consensus 228 ~K~R~-------------~~~~v~~~------~-~~gdv~Gk~VlIVDDII~TG~Tl~~aa~ 269 (353)
-++.- ...++... . +.|.-.|-++|+|.-++.+.+-....-+
T Consensus 91 A~KP~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV~Pl~~~d~~~t~~nR 152 (175)
T COG2179 91 AKKPFGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILVEPLVAPDGWITKINR 152 (175)
T ss_pred ccCccHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEEEEEEeccccchhhhhhH
Confidence 22110 01122111 1 2445678899999999999984444443
No 106
>PLN02440 amidophosphoribosyltransferase
Probab=72.82 E-value=13 Score=38.54 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=46.3
Q ss_pred cCHHHHHHHHHHhCCCccCCCcc-ccC------------CCCceeEEeC---CccCCceEEEEecCCCCCchHHHHHHHH
Q psy17482 21 ASHFFAKQNAEYKGVQRYIPPRL-SPE------------DRGQIGVEIG---ESVRGEDVYIVQSGSGEVNDNLMELLIM 84 (353)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~-~~f------------~dGE~~v~i~---~~vrg~dv~iiqs~~~~~nd~lmeLll~ 84 (353)
....+|..+++.+|++ +...-+ ++. .++....++. ..++|++|+||-.... .-. -|--+
T Consensus 285 s~~~~A~~la~~lgiP-~~~~lvr~ry~~rt~i~~~q~~r~~~~~~k~~~~~~~v~gk~VlLVDDiit--tGt--Tl~~i 359 (479)
T PLN02440 285 SGRVAALGYAAKLGVP-FQQGLIRSHYVGRTFIEPSQKIRDFSVKLKLNPVRSVLEGKRVVVVDDSIV--RGT--TSSKI 359 (479)
T ss_pred cHHHHHHHHHHHhCCC-chhheEEEeeccccccCcchhhhhhhheeeeecccccccCceEEEEeceeC--cHH--HHHHH
Confidence 3457899999999997 321000 111 2233333332 5689999999964211 112 23346
Q ss_pred HHHHhhhCCCeEEEEee
Q psy17482 85 INACKIASASRVTAVIP 101 (353)
Q Consensus 85 ~~a~r~~~a~~i~~viP 101 (353)
++.||++||++|.+.+-
T Consensus 360 ~~~L~~aGa~~V~v~v~ 376 (479)
T PLN02440 360 VRMLREAGAKEVHMRIA 376 (479)
T ss_pred HHHHHhcCCCEEEEEEE
Confidence 78899999999987654
No 107
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=70.41 E-value=28 Score=31.18 Aligned_cols=77 Identities=16% Similarity=0.151 Sum_probs=49.3
Q ss_pred ccCHHHHHHHHHHhCCCc-cCCCccccCC-----CCceeEEe--CCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhh
Q psy17482 20 KASHFFAKQNAEYKGVQR-YIPPRLSPED-----RGQIGVEI--GESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIA 91 (353)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~-~~~~~~~~f~-----dGE~~v~i--~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~ 91 (353)
+.+-.+|..+++.|+.+. ..-...+.+. +|+..+.. +.+++|++|+||--.... -..|. .+.+.++..
T Consensus 43 ~Gg~~fa~~L~~~L~~~~~v~~l~~ssY~~~~~~~~~v~i~~~~~~~v~gk~VLlVDDIiDT--G~TL~--~l~~~l~~~ 118 (178)
T PRK15423 43 RGSFMFMADLCREVQVSHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDIIDS--GNTLS--KVREILSLR 118 (178)
T ss_pred cCChHHHHHHHHHhCCCcceeEEEEEEecCCCcccCceEEecCCCCCCCCCEEEEEeeecCc--hHHHH--HHHHHHHhC
Confidence 345678999999999862 1123444443 56666653 458999999999754321 12333 566677888
Q ss_pred CCCeEEEEe
Q psy17482 92 SASRVTAVI 100 (353)
Q Consensus 92 ~a~~i~~vi 100 (353)
++++|.+..
T Consensus 119 ~~~~v~~av 127 (178)
T PRK15423 119 EPKSLAICT 127 (178)
T ss_pred CCCEEEEEE
Confidence 899885443
No 108
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=70.13 E-value=11 Score=38.74 Aligned_cols=78 Identities=10% Similarity=0.117 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHhCCCccCC-----Cccc-cC--CC-------CceeEEe-CCccCCceEEEEecCCCCCchHHHHHHHHH
Q psy17482 22 SHFFAKQNAEYKGVQRYIP-----PRLS-PE--DR-------GQIGVEI-GESVRGEDVYIVQSGSGEVNDNLMELLIMI 85 (353)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~-----~~~~-~f--~d-------GE~~v~i-~~~vrg~dv~iiqs~~~~~nd~lmeLll~~ 85 (353)
....|..+|+.||++ +.. .... .| ++ +...+.. .+.++|++|+||-..-. .-.. +.-++
T Consensus 286 g~~~A~~~A~~lgip-~~~~l~rk~~~~r~~i~~~qr~rn~~~~~~~~~~~~~v~gK~VlLVDDvit--TG~T--l~~a~ 360 (445)
T PRK08525 286 GVPAAIGYAQESGIP-FEMAIVRNHYVGRTFIEPTQEMRNLKVKLKLNPMSKVLEGKRIVVIDDSIV--RGTT--SKKIV 360 (445)
T ss_pred HHHHHHHHHHHhCCC-ccceEEEeeccccccCCHHHHHHhhheeEEecccccccCCCeEEEEecccC--cHHH--HHHHH
Confidence 356799999999997 311 0110 11 11 2233232 34589999999974321 1122 23477
Q ss_pred HHHhhhCCCeEEEEeeCCC
Q psy17482 86 NACKIASASRVTAVIPCFP 104 (353)
Q Consensus 86 ~a~r~~~a~~i~~viPY~~ 104 (353)
+.||++||++|.+.+-.=+
T Consensus 361 ~~Lr~aGA~~V~v~~~hp~ 379 (445)
T PRK08525 361 SLLRAAGAKEIHLRIACPE 379 (445)
T ss_pred HHHHhcCCCEEEEEEECCC
Confidence 8999999999988764433
No 109
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=68.20 E-value=29 Score=30.63 Aligned_cols=77 Identities=21% Similarity=0.245 Sum_probs=47.6
Q ss_pred ccCHHHHHHHHHHhCCCc-cCCCccccCC-----CCceeE--EeCCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhh
Q psy17482 20 KASHFFAKQNAEYKGVQR-YIPPRLSPED-----RGQIGV--EIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIA 91 (353)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~-~~~~~~~~f~-----dGE~~v--~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~ 91 (353)
+....+|+.+++.|+++. ..-..++.+. .|+..+ .++.++.|++|+||-.... .=--+.-.+++|+..
T Consensus 35 ~GG~~~a~~l~~~L~~~~~v~~i~~~~Y~~~~~~~~~~~~~~~~~~~~~gk~vlivDDii~----TG~Tl~~~~~~l~~~ 110 (166)
T TIGR01203 35 KGSFPFFADLIRYIAVPVQVDFMAVSSYGNGMQSSGDVKILKDLDLSIKGKDVLIVEDIVD----TGLTLQYLLDLLKAR 110 (166)
T ss_pred cCCHHHHHHHHHhcCCCceeeEEEEeeccCCCcccCceEEecCCCCCCCCCEEEEEeeeeC----cHHHHHHHHHHHHHC
Confidence 456778999999999762 1112222222 233332 2556899999999975432 112344556777888
Q ss_pred CCCeEEEEe
Q psy17482 92 SASRVTAVI 100 (353)
Q Consensus 92 ~a~~i~~vi 100 (353)
|+++|.++.
T Consensus 111 g~~~i~~~~ 119 (166)
T TIGR01203 111 KPKSLKIVT 119 (166)
T ss_pred CCCEEEEEE
Confidence 999987665
No 110
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=66.50 E-value=14 Score=33.08 Aligned_cols=72 Identities=17% Similarity=0.174 Sum_probs=44.5
Q ss_pred ccCHHHHHHHHHHhCCCccCCCccccCCCCceeEEeCCcc-CCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCeEE
Q psy17482 20 KASHFFAKQNAEYKGVQRYIPPRLSPEDRGQIGVEIGESV-RGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVT 97 (353)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~dGE~~v~i~~~v-rg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~i~ 97 (353)
...-.+|..+|.+||++ +...+-.+-..|+....-+ .+ +|++|+||...-..- . -+.-++++++++||+-+.
T Consensus 67 ~ggi~lA~~lA~~l~~p-~~~~rk~~k~yg~~~~~~g-~~~~g~~VlIVDDvitTG-~---Tl~~~~~~l~~~Ga~vv~ 139 (176)
T PRK13812 67 LGAVPLVAVTSVETGVP-YVIARKQAKEYGTGNRIEG-RLDEGEEVVVLEDIATTG-Q---SAVDAVEALREAGATVNR 139 (176)
T ss_pred cchHHHHHHHHHHHCCC-EEEEeccCCcCCCCCeEEe-cCCCcCEEEEEEEeeCCC-H---HHHHHHHHHHHCCCeEEE
Confidence 35567899999999998 3233333334455433223 44 899999997532111 1 345567888889987553
No 111
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=66.15 E-value=54 Score=28.30 Aligned_cols=109 Identities=23% Similarity=0.248 Sum_probs=69.9
Q ss_pred CCCCchHHHHHHHHHHHHhhhCCCeEEEEeeCCCccccccccCCCCCCCCchhHHHHhhhccccccCCCCcchHHHHHHH
Q psy17482 71 SGEVNDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANM 150 (353)
Q Consensus 71 ~~~~nd~lmeLll~~~a~r~~~a~~i~~viPY~~YsRqDr~~~~~~~~~~~~~~~~~~~~~~~~kf~~~e~isak~vA~l 150 (353)
....++.-.|+|-....+++....+|++++- + ..+-.+..+.+.
T Consensus 10 ~~~l~~~~~e~l~~A~~La~~~g~~v~av~~--G----------------------------------~~~~~~~~l~~~ 53 (164)
T PF01012_consen 10 DGRLNPVSLEALEAARRLAEALGGEVTAVVL--G----------------------------------PAEEAAEALRKA 53 (164)
T ss_dssp TCEE-HHHHHHHHHHHHHHHCTTSEEEEEEE--E----------------------------------TCCCHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHhhcCCeEEEEEE--e----------------------------------cchhhHHHHhhh
Confidence 3456777789998888888765557888761 1 111245666777
Q ss_pred HHHcCCCEEEEEcCChhHHhcccCccccccccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEE
Q psy17482 151 LSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFA 225 (353)
Q Consensus 151 L~~~g~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~ 225 (353)
+...|+|+|+.++- +.+.. |+ .-.....|++.+++.- -+.++++....|...+..+|.+||.++.
T Consensus 54 l~~~G~d~v~~~~~--~~~~~-~~----~~~~a~~l~~~~~~~~---~~lVl~~~t~~g~~la~~lA~~L~~~~v 118 (164)
T PF01012_consen 54 LAKYGADKVYHIDD--PALAE-YD----PEAYADALAELIKEEG---PDLVLFGSTSFGRDLAPRLAARLGAPLV 118 (164)
T ss_dssp HHSTTESEEEEEE---GGGTT-C-----HHHHHHHHHHHHHHHT----SEEEEESSHHHHHHHHHHHHHHT-EEE
T ss_pred hhhcCCcEEEEecC--ccccc-cC----HHHHHHHHHHHHHhcC---CCEEEEcCcCCCCcHHHHHHHHhCCCcc
Confidence 88899999999873 11211 11 1112456677676642 3467777777888899999999999864
No 112
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=66.12 E-value=27 Score=30.82 Aligned_cols=72 Identities=22% Similarity=0.154 Sum_probs=44.5
Q ss_pred ccCHHHHHHHHHHhCCCccCCCc-cccC-----------CCCceeEEeCC--ccCCceEEEEecCCCCCchHHHHHHHHH
Q psy17482 20 KASHFFAKQNAEYKGVQRYIPPR-LSPE-----------DRGQIGVEIGE--SVRGEDVYIVQSGSGEVNDNLMELLIMI 85 (353)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~-~~~f-----------~dGE~~v~i~~--~vrg~dv~iiqs~~~~~nd~lmeLll~~ 85 (353)
...-.+|..+|..||++. ..++ -.++ ..|+..+.+.. .++|++|+||-.....- --+.-++
T Consensus 60 ~~Gi~~a~~la~~l~~p~-~~~rk~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~g~~VLIVDDivtTG----~Tl~~~~ 134 (175)
T PRK02304 60 ARGFIFGAALAYKLGIGF-VPVRKPGKLPRETISESYELEYGTDTLEIHKDAIKPGDRVLIVDDLLATG----GTLEAAI 134 (175)
T ss_pred cchHHHHHHHHHHhCCCE-EEEEcCCCCCCceEeEEEecccCceEEEEchhhcCCCCEEEEEeCCcccc----HHHHHHH
Confidence 345688999999999983 1111 1111 12344444443 38999999997643221 1245667
Q ss_pred HHHhhhCCCeE
Q psy17482 86 NACKIASASRV 96 (353)
Q Consensus 86 ~a~r~~~a~~i 96 (353)
+.++++||+.+
T Consensus 135 ~~l~~~Ga~~v 145 (175)
T PRK02304 135 KLLERLGAEVV 145 (175)
T ss_pred HHHHHcCCEEE
Confidence 78889999866
No 113
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=65.90 E-value=52 Score=30.95 Aligned_cols=22 Identities=14% Similarity=0.342 Sum_probs=19.4
Q ss_pred HHHHHHhhhCCCeEEEEeeCCC
Q psy17482 83 IMINACKIASASRVTAVIPCFP 104 (353)
Q Consensus 83 l~~~a~r~~~a~~i~~viPY~~ 104 (353)
-+++||+..|++||-++-||.+
T Consensus 110 A~~~AL~alg~~RIalvTPY~~ 131 (239)
T TIGR02990 110 AAVDGLAALGVRRISLLTPYTP 131 (239)
T ss_pred HHHHHHHHcCCCEEEEECCCcH
Confidence 4678999999999999999975
No 114
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=65.74 E-value=19 Score=31.56 Aligned_cols=79 Identities=20% Similarity=0.302 Sum_probs=48.1
Q ss_pred cchHHHHHHHHHHcCCCEEEEEcCChhHHhcccCccccccccHHHHHHHHHhhCCCCCCeEEEecC-------CCchhhH
Q psy17482 141 PISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPD-------AGGAKRV 213 (353)
Q Consensus 141 ~isak~vA~lL~~~g~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~i~~~~~~~~~~vvVspd-------~Gg~~ra 213 (353)
-.+...=.++|+.+|+|.++.+|. +....++++..-+-..|.+.+ + -..++|+.| .|.+..-
T Consensus 61 l~s~~ek~~~l~~~Gvd~~~~~~F---------~~~~~~ls~~~Fi~~iL~~~l-~-~~~ivvG~DfrFG~~~~G~~~~L 129 (157)
T PF06574_consen 61 LTSLEEKLELLESLGVDYVIVIPF---------TEEFANLSPEDFIEKILKEKL-N-VKHIVVGEDFRFGKNRSGDVELL 129 (157)
T ss_dssp SS-HHHHHHHHHHTTESEEEEE-C---------CCHHCCS-HHHHHHHHCCCHC-T-EEEEEEETT-EESGGGEEEHHHH
T ss_pred CCCHHHHHHHHHHcCCCEEEEecc---------hHHHHcCCHHHHHHHHHHhcC-C-ccEEEEccCccCCCCCCCCHHHH
Confidence 456788889999999999999884 322334554433333344333 1 245889998 6777777
Q ss_pred HHHHHHcCCcEEEEEEe
Q psy17482 214 TSIADRLNVEFALIHKE 230 (353)
Q Consensus 214 ~~la~~Lg~~~~~l~K~ 230 (353)
+.+++..|..+.++...
T Consensus 130 ~~~~~~~g~~v~~v~~~ 146 (157)
T PF06574_consen 130 KELGKEYGFEVEVVPPV 146 (157)
T ss_dssp HHCTTTT-SEEEEE---
T ss_pred HHhcccCceEEEEECCE
Confidence 77777777776655443
No 115
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=65.74 E-value=32 Score=31.09 Aligned_cols=76 Identities=17% Similarity=0.086 Sum_probs=49.1
Q ss_pred cCHHHHHHHHHHhCC---Cc-cCCCccccCC-----CCceeEEe---CCccCCceEEEEecCCCCCchHHHHHHHHHHHH
Q psy17482 21 ASHFFAKQNAEYKGV---QR-YIPPRLSPED-----RGQIGVEI---GESVRGEDVYIVQSGSGEVNDNLMELLIMINAC 88 (353)
Q Consensus 21 ~~~~~~~~~~~~~~~---~~-~~~~~~~~f~-----dGE~~v~i---~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~ 88 (353)
....+|..+++.|+. +. ..-.+.+... .|+..+.. ..+++|++|+||--.. |.=--+..+++.+
T Consensus 45 Gg~~fa~~L~~~L~~~~~~~~i~fi~~~sy~~~~~~~g~~~i~~~~~~~~v~gk~VliVDDIi----dTG~Tl~~~~~~l 120 (189)
T PLN02238 45 GAFMFLADLVRAIQPLPRGLTVDFIRASSYGGGTESSGVAKVSGADLKIDVKGKHVLLVEDIV----DTGNTLSALVAHL 120 (189)
T ss_pred CCHHHHHHHHHHhCccCCCeEEEEEEeeecCCCccccCceeEecCCCCCCCCCCEEEEEeccc----chHHHHHHHHHHH
Confidence 345678899999998 31 0112233332 35565554 3579999999997532 3333455667889
Q ss_pred hhhCCCeEEEEe
Q psy17482 89 KIASASRVTAVI 100 (353)
Q Consensus 89 r~~~a~~i~~vi 100 (353)
+..|+++|.+..
T Consensus 121 ~~~g~~~v~~av 132 (189)
T PLN02238 121 EAKGAASVSVCA 132 (189)
T ss_pred HhCCCCEEEEEE
Confidence 999999997664
No 116
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=65.35 E-value=15 Score=38.53 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=45.8
Q ss_pred cCHHHHHHHHHHhCCCccCCCcccc------C--CC---Cc----eeE-EeCCccCCceEEEEecCCCCCchHHHHHHHH
Q psy17482 21 ASHFFAKQNAEYKGVQRYIPPRLSP------E--DR---GQ----IGV-EIGESVRGEDVYIVQSGSGEVNDNLMELLIM 84 (353)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~------f--~d---GE----~~v-~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~ 84 (353)
..-.+|..+|+.+|++ +.+.-+.. | +. .+ ..+ .+.+.++|+.|+||--.... -. -+--+
T Consensus 322 sg~~~A~g~A~~lgip-~~~~L~r~~y~grtfi~p~q~~R~~~~~~kl~~~~~~~~gkrVlLVDDvItt--Gt--Tl~~~ 396 (500)
T PRK07349 322 SGIPAAIGFSQASGIP-YAEGLIKNRYVGRTFIQPTQSMRESGIRMKLNPLKDVLAGKRIIIVDDSIVR--GT--TSRKI 396 (500)
T ss_pred ccHHHHHHHHHHHCCC-chhceEEEeccCccccCCCHHHHHhhhheeeeccccccCCCEEEEEeceeCC--cH--HHHHH
Confidence 3446799999999998 43211110 1 11 11 111 13467799999999642111 11 33456
Q ss_pred HHHHhhhCCCeEEEEee
Q psy17482 85 INACKIASASRVTAVIP 101 (353)
Q Consensus 85 ~~a~r~~~a~~i~~viP 101 (353)
+.+||++||+.|.+-+-
T Consensus 397 ~~~Lr~aGAkeV~~~i~ 413 (500)
T PRK07349 397 VKALRDAGATEVHMRIS 413 (500)
T ss_pred HHHHHHhCCeEEEEEeC
Confidence 78999999999988753
No 117
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=64.30 E-value=27 Score=31.61 Aligned_cols=75 Identities=21% Similarity=0.154 Sum_probs=44.7
Q ss_pred hccCHHHHHHHHHHhCCCccCCCccccCCCCceeEEeCCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCeEEE
Q psy17482 19 RKASHFFAKQNAEYKGVQRYIPPRLSPEDRGQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTA 98 (353)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dGE~~v~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~i~~ 98 (353)
....-.+|..+|+.|+++. ...+-.....|+...-....++|+.|+||...-. .=--+.-+++.+++.||+.+.+
T Consensus 72 ~~gG~~~A~~la~~L~~~~-~~~rk~~~~~g~~~~~~~~~~~g~~VliVDDvi~----tG~Tl~~~~~~l~~~Ga~~v~~ 146 (202)
T PRK00455 72 ATGGIPLAAAVARALDLPA-IFVRKEAKDHGEGGQIEGRRLFGKRVLVVEDVIT----TGGSVLEAVEAIRAAGAEVVGV 146 (202)
T ss_pred ccCcHHHHHHHHHHhCCCE-EEEecccCCCCCCceEEccCCCCCEEEEEecccC----CcHHHHHHHHHHHHcCCEEEEE
Confidence 3466778999999999873 2211111122322222234568999999975322 1123445578888999887644
No 118
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=63.76 E-value=17 Score=30.73 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=32.6
Q ss_pred cCCCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEE
Q psy17482 244 GDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAIL 283 (353)
Q Consensus 244 gdv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~ 283 (353)
++++|++++|+ -+|++-..++..|.+.|+++|+++.
T Consensus 8 ~~l~~~~vlvi----GaGg~ar~v~~~L~~~g~~~i~i~n 43 (135)
T PF01488_consen 8 GDLKGKRVLVI----GAGGAARAVAAALAALGAKEITIVN 43 (135)
T ss_dssp STGTTSEEEEE----SSSHHHHHHHHHHHHTTSSEEEEEE
T ss_pred CCcCCCEEEEE----CCHHHHHHHHHHHHHcCCCEEEEEE
Confidence 57899999986 5899999999999999999999886
No 119
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=63.22 E-value=30 Score=31.65 Aligned_cols=77 Identities=13% Similarity=0.016 Sum_probs=50.1
Q ss_pred cCHHHHHHHHHHhCCCccCCCccccC-CCCc---eeEEeCCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCeE
Q psy17482 21 ASHFFAKQNAEYKGVQRYIPPRLSPE-DRGQ---IGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRV 96 (353)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~f-~dGE---~~v~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~i 96 (353)
+...+++.+++.|+.-...-..+.+. ..++ .+.+++.++.|++|+|+...-..- --+...++.|+..|+++|
T Consensus 80 gG~~~~~~l~~~l~~~~~~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG----~Tl~~ai~~L~~~G~~~I 155 (209)
T PRK00129 80 AGLGMVDGVLKLIPSARVGHIGLYRDEETLEPVEYYVKLPEDIDERTVIVVDPMLATG----GSAIAAIDLLKKRGAKNI 155 (209)
T ss_pred CCHHHHHHHHHhCCcCeeeeEEEEeCCCCCCCEEEEeeCCCcCCCCEEEEECCcccch----HHHHHHHHHHHHcCCCEE
Confidence 55677888888887432333333321 1122 366788999999999997643221 234566788888899999
Q ss_pred EEEee
Q psy17482 97 TAVIP 101 (353)
Q Consensus 97 ~~viP 101 (353)
.++.-
T Consensus 156 ~~~~l 160 (209)
T PRK00129 156 KVLCL 160 (209)
T ss_pred EEEEE
Confidence 87765
No 120
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=63.21 E-value=49 Score=25.55 Aligned_cols=63 Identities=19% Similarity=0.243 Sum_probs=39.7
Q ss_pred EEEEEecccCChHHHHHHHHHHHhc-CCCEEEEEEEeccCC---h--h---HHHHHhhcCCCEEEEecCCCCC
Q psy17482 250 VAILVDDMADTCGTICHAAEKLMEA-GATKVYAILTHGIFS---G--P---AINRINNACFEAVVVTNTIPQD 313 (353)
Q Consensus 250 ~VlIVDDII~TG~Tl~~aa~~Lk~~-GA~~V~~~~tHglfs---~--~---a~~~l~~s~id~ii~TnTi~~~ 313 (353)
.+.+++|...+=..+.++.+.|++. +.+++.++..- ... + + .+..+.....+.+++|..-|..
T Consensus 13 ~~~vi~D~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~-~~d~g~~~~~~~~~~~~~~~~~~d~vi~~~~~~r~ 84 (91)
T PF02875_consen 13 GPTVIDDYAHNPDSIRALLEALKELYPKGRIIAVFGA-MGDLGSKDKDFHEEIGELAAQLADVVILTGDNPRA 84 (91)
T ss_dssp TEEEEEET--SHHHHHHHHHHHHHHCTTSEEEEEEEE-BTT-HTSHHHCHHHHHHHHTTCSSEEEEETSBTTT
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHhccCCcEEEEEcc-ccccccccHHHHHHHHHHHHhcCCEEEEcCCCCCC
Confidence 4667777999999999999999987 55666666521 111 2 1 2333444456778888766654
No 121
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=63.16 E-value=17 Score=37.49 Aligned_cols=73 Identities=21% Similarity=0.252 Sum_probs=45.6
Q ss_pred hccCHHHHHHHHHHhCCCccCC---------CccccCCC---CceeEEe-----CCccCCceEEEEecCCCCCchHHH--
Q psy17482 19 RKASHFFAKQNAEYKGVQRYIP---------PRLSPEDR---GQIGVEI-----GESVRGEDVYIVQSGSGEVNDNLM-- 79 (353)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~f~d---GE~~v~i-----~~~vrg~dv~iiqs~~~~~nd~lm-- 79 (353)
|.++...|-..|+.+|++ |.. .+|- .|. -|..|+. .+.++||.|++|.. +++
T Consensus 291 PDSg~~aAig~A~~sGiP-y~~GliKNrYvgRTFI-~P~q~~R~~~Vr~KLnpvr~~v~GKrVvlVDD-------SIVRG 361 (470)
T COG0034 291 PDSGRPAAIGYARASGIP-YEEGLIKNRYVGRTFI-MPTQELREKGVRLKLNPVREVVKGKRVVLVDD-------SIVRG 361 (470)
T ss_pred CCCChHHHHHHHHHhCCc-hhhccccccccceeee-CCcHHHHHhhhhhhcCchHHHhCCCeEEEEcc-------ccccC
Confidence 455667788889999987 322 1121 122 2333442 26789999999863 222
Q ss_pred -HHHHHHHHHhhhCCCeEEEEe
Q psy17482 80 -ELLIMINACKIASASRVTAVI 100 (353)
Q Consensus 80 -eLll~~~a~r~~~a~~i~~vi 100 (353)
-.--+++.+|++||+.|.+-+
T Consensus 362 TTsr~IV~mlReAGAkEVHvri 383 (470)
T COG0034 362 TTSRRIVQMLREAGAKEVHVRI 383 (470)
T ss_pred ccHHHHHHHHHHhCCCEEEEEe
Confidence 123456677999999998764
No 122
>KOG1503|consensus
Probab=63.14 E-value=1.3e+02 Score=28.77 Aligned_cols=135 Identities=10% Similarity=0.130 Sum_probs=75.5
Q ss_pred eEEEecCCCchhhHHHHHHHcCCcEEEEEEeecCCCceEEEEeecCCCCCEEEEEeccc----CChHHHHHHHHHHHhcC
Q psy17482 200 SIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMA----DTCGTICHAAEKLMEAG 275 (353)
Q Consensus 200 ~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~v~~~~~~gdv~Gk~VlIVDDII----~TG~Tl~~aa~~Lk~~G 275 (353)
.++.+-.. --..|+.++++||+.+.-..-....+.+ ....+...|+||++.|+--+- ++=--+.-.+=++|..-
T Consensus 9 ~vl~s~ns-~~elak~vaerlgi~~g~~~vy~~tnre-t~vei~~svrgkdvfiiqt~skdvn~~vmellim~yackts~ 86 (354)
T KOG1503|consen 9 MVLFSGNS-HPELAKMVAERLGIELGKATVYQKTNRE-TRVEIKESVRGKDVFIIQTGSKDVNNDVMELLIMAYACKTSC 86 (354)
T ss_pred eEEEcCCC-CHHHHHHHHHHhcccccceEEEecCCCc-eEEEhhhhccCceEEEEEecCcccchHHHHHHHHHHHHhhhh
Confidence 34444433 3378999999999865321111111222 123566789999999986433 22233444556678888
Q ss_pred CCEEEEEEEeccCChh-------------HHHHHhhcCCCEEEEecCCCCCCCC-CCCCCeeEEehHHHHHHHHHH
Q psy17482 276 ATKVYAILTHGIFSGP-------------AINRINNACFEAVVVTNTIPQDGHM-KDCTKIRCIDVSMMFAEAVRR 337 (353)
Q Consensus 276 A~~V~~~~tHglfs~~-------------a~~~l~~s~id~ii~TnTi~~~~~~-~~~~ki~~lsva~lla~~i~~ 337 (353)
|+.|..+...--.|+. ..+.+..+|+..+++.|-....-+. -.+ .+.-+--+|.|-+.|+.
T Consensus 87 aksiigvipy~pyskqckmrkrgsiv~klla~mmckaglthlitmdlhqkeiqgff~~-pvdnlraspfllqyiqe 161 (354)
T KOG1503|consen 87 AKSIIGVIPYLPYSKQCKMRKRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFSI-PVDNLRASPFLLQYIQE 161 (354)
T ss_pred hhceEEEeecCccchhhhhhhcccHHHHHHHHHHHhcccceEEeehhhhHhhcceecc-cccccccCHHHHHHHHH
Confidence 8888777643333332 2234456899999988865322110 111 12233467777776654
No 123
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=61.23 E-value=29 Score=35.65 Aligned_cols=75 Identities=19% Similarity=0.179 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHhCCCccCCCccc------cC--CCC-------ceeEE-eCCccCCceEEEEecCCCCCchHHHHHHHHH
Q psy17482 22 SHFFAKQNAEYKGVQRYIPPRLS------PE--DRG-------QIGVE-IGESVRGEDVYIVQSGSGEVNDNLMELLIMI 85 (353)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~------~f--~dG-------E~~v~-i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~ 85 (353)
....|..+|+.+|++ +...-+. +| ++. +.... +...++|+.|+||...-.. -. .+--++
T Consensus 284 g~~~A~~la~~lgip-~~~~l~r~~~~~r~~i~~~q~~R~~~v~~k~~~~~~~~~gk~v~lvDD~itt--G~--T~~~~~ 358 (442)
T TIGR01134 284 GRSAALGFAQASGIP-YREGLIKNRYVGRTFIMPTQELRELSVRLKLNPIREVFRGKRVVLVDDSIVR--GT--TSRQIV 358 (442)
T ss_pred HHHHHHHHHHHhCCC-chHHeEEeccccccccCCCHHHHHHHHhhhcccccccCCCCEEEEEeccccc--cH--HHHHHH
Confidence 456799999999997 3221110 11 111 11111 2356889999999742111 11 233567
Q ss_pred HHHhhhCCCeEEEEee
Q psy17482 86 NACKIASASRVTAVIP 101 (353)
Q Consensus 86 ~a~r~~~a~~i~~viP 101 (353)
.+||++||+.|.+.+-
T Consensus 359 ~~l~~~ga~~v~~~~~ 374 (442)
T TIGR01134 359 KMLRDAGAKEVHVRIA 374 (442)
T ss_pred HHHHHcCCcEEEEEEc
Confidence 8999999999998876
No 124
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=59.97 E-value=20 Score=37.52 Aligned_cols=75 Identities=17% Similarity=0.154 Sum_probs=44.5
Q ss_pred cCHHHHHHHHHHhCCCccCCCccc------cC--CC---Cc--e--eEE-eCCccCCceEEEEecCCCCCchHHHHHHHH
Q psy17482 21 ASHFFAKQNAEYKGVQRYIPPRLS------PE--DR---GQ--I--GVE-IGESVRGEDVYIVQSGSGEVNDNLMELLIM 84 (353)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~------~f--~d---GE--~--~v~-i~~~vrg~dv~iiqs~~~~~nd~lmeLll~ 84 (353)
....+|..+|+.+|++ +.+.-+. +| ++ .+ + ... +.+.++|+.|+||-..... -.. +--+
T Consensus 303 s~~~~A~~la~~lgip-~~~~l~k~~~~~rt~i~~~q~~R~~~vr~~f~~~~~~v~gK~VlLVDDvitT--GaT--l~~~ 377 (501)
T PRK09246 303 TSRDAALEIARILGVP-YREGFVKNRYVGRTFIMPGQAQRKKSVRQKLNAIRAEFKGKNVLLVDDSIVR--GTT--SEQI 377 (501)
T ss_pred cHHHHHHHHHHHHCCC-ccceEEEEecccccccCcCHHHHHHHHHhhcCCccccccCCeEEEEeccccc--cHH--HHHH
Confidence 3456899999999998 3221111 01 01 00 1 111 2456899999999642211 122 2336
Q ss_pred HHHHhhhCCCeEEEEe
Q psy17482 85 INACKIASASRVTAVI 100 (353)
Q Consensus 85 ~~a~r~~~a~~i~~vi 100 (353)
+++||++||++|.+.+
T Consensus 378 ~~~L~~aGA~~V~v~v 393 (501)
T PRK09246 378 VQMAREAGAKKVYFAS 393 (501)
T ss_pred HHHHHHcCCCEEEEEE
Confidence 7899999999998764
No 125
>PLN02501 digalactosyldiacylglycerol synthase
Probab=59.94 E-value=95 Score=34.25 Aligned_cols=137 Identities=17% Similarity=0.189 Sum_probs=68.7
Q ss_pred CceEEEEecCCCC--CchHHHHHHHHHHHHhhhCCCeEEEEeeCCCccccccccCCCCCCCCchhHHHHhhhccccccCC
Q psy17482 61 GEDVYIVQSGSGE--VNDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRS 138 (353)
Q Consensus 61 g~dv~iiqs~~~~--~nd~lmeLll~~~a~r~~~a~~i~~viPY~~YsRqDr~~~~~~~~~~~~~~~~~~~~~~~~kf~~ 138 (353)
+++|.|+-|-+-| --..+-.|+-.+.-++ .|-.+||+|+|+++-+ |+... ++ +...|
T Consensus 322 ~r~~~ivTtAslPWmTGtavnpL~rAayLa~-~~~~~VtlviPWl~~~--dq~~v--------------y~--~~~~F-- 380 (794)
T PLN02501 322 KRHVAIVTTASLPWMTGTAVNPLFRAAYLAK-SAKQNVTLLVPWLCKS--DQELV--------------YP--NNLTF-- 380 (794)
T ss_pred CCeEEEEEcccCcccccccccHHHHHHHhcc-cCCceEEEEEecCCcc--ccccc--------------cC--CCccc--
Confidence 5899999874322 0122334444444344 4578999999999954 44433 11 11112
Q ss_pred CCcc-hHHHHHHHH-HHcCCCEEEEEcCChhHHhcccCccccccccHHHHHHHHHhhCCCCCCeEEEecCCCchh-hHHH
Q psy17482 139 RAPI-SAKLVANML-SVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAK-RVTS 215 (353)
Q Consensus 139 ~e~i-sak~vA~lL-~~~g~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~-ra~~ 215 (353)
..|- --.++-++| +.+|+..-.-+-. +.+-|......|.+...+.+.|.+.- .+-..+..|..=|.. -|..
T Consensus 381 ~~p~eQe~~ir~wl~~r~g~~~~~~i~f----Ypg~~~~~~~SI~p~gdI~~~L~~f~--PDVVHLatP~~LGw~~~Glr 454 (794)
T PLN02501 381 SSPEEQESYIRNWLEERIGFKADFKISF----YPGKFSKERRSIIPAGDTSQFIPSKD--ADIAILEEPEHLNWYHHGKR 454 (794)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCceEEe----ecchhccCCccccchHHHHHHhhccC--CCEEEECCchhhccHHHHHH
Confidence 0111 235667778 6677652222211 12223333334555666777776431 122334445443332 3567
Q ss_pred HHHHcCCcEE
Q psy17482 216 IADRLNVEFA 225 (353)
Q Consensus 216 la~~Lg~~~~ 225 (353)
.|++++ |+.
T Consensus 455 ~ArKl~-PVV 463 (794)
T PLN02501 455 WTDKFN-HVV 463 (794)
T ss_pred HHHHcC-CeE
Confidence 778888 643
No 126
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=59.31 E-value=26 Score=36.12 Aligned_cols=74 Identities=18% Similarity=0.211 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhCCCccCCCccc-c-----C---CCCceeEE-----eCCccCCceEEEEecCCCCCchHHHHHHHHHHHH
Q psy17482 23 HFFAKQNAEYKGVQRYIPPRLS-P-----E---DRGQIGVE-----IGESVRGEDVYIVQSGSGEVNDNLMELLIMINAC 88 (353)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~-~-----f---~dGE~~v~-----i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~ 88 (353)
..+|..+|+.+|++ +...-.. + | ..-+..++ +...++|+.|+||...-. .-. -+--++++|
T Consensus 283 ~~~A~~~a~~lgip-~~~~l~k~r~~~rtfi~~~qr~~~~~~k~~~~~~~v~gk~VlLVDD~It--tGt--Tl~~~~~~L 357 (442)
T PRK08341 283 RTAALGFAHESGIP-YMEGLIKNRYIGRTFIMPSGRELKVKLKLSPVREVINGKRVVLVDDSIV--RGT--TMKRIVKML 357 (442)
T ss_pred HHHHHHHHHHhCCC-chheEEEeccccccccCcCchhhhheeeecccccccCCCEEEEEeeeec--cHH--HHHHHHHHH
Confidence 35899999999998 3221111 1 1 11222221 245689999999964210 112 233477899
Q ss_pred hhhCCCeEEEEee
Q psy17482 89 KIASASRVTAVIP 101 (353)
Q Consensus 89 r~~~a~~i~~viP 101 (353)
|++||++|.+.+.
T Consensus 358 ~~aGAk~V~~~~~ 370 (442)
T PRK08341 358 RDAGAREVHVRIA 370 (442)
T ss_pred HhcCCcEEEEEEc
Confidence 9999999988763
No 127
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=59.21 E-value=43 Score=30.62 Aligned_cols=77 Identities=8% Similarity=-0.021 Sum_probs=49.4
Q ss_pred cCHHHHHHHHHHhCCCccCCCcccc-CCCCc---eeEEeCCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCeE
Q psy17482 21 ASHFFAKQNAEYKGVQRYIPPRLSP-EDRGQ---IGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRV 96 (353)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~-f~dGE---~~v~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~i 96 (353)
+...+++...+.++--+..-....+ ...++ .+.++++++.|++|+|+...-..- --+..+++.+++.|+++|
T Consensus 78 gg~~~~~~l~~~l~~~~v~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG----~Tl~~ai~~L~~~G~~~I 153 (207)
T TIGR01091 78 AGLGMVDGVLKLIPEAKVGHVGAYRNEETLKPVPYYSKLPEDIDERTVIVLDPMLATG----GTMIAALDLLKKRGAKKI 153 (207)
T ss_pred CcHHHHHHHHHhCCcCceeEEEEEeCCCCCCCEEEEecCCCCCCCCEEEEECCCccch----HHHHHHHHHHHHcCCCEE
Confidence 4456677777777632222222222 12233 467788999999999997653221 245567888899999999
Q ss_pred EEEee
Q psy17482 97 TAVIP 101 (353)
Q Consensus 97 ~~viP 101 (353)
.++..
T Consensus 154 ~v~~l 158 (207)
T TIGR01091 154 KVLSI 158 (207)
T ss_pred EEEEE
Confidence 88776
No 128
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=59.19 E-value=43 Score=30.21 Aligned_cols=72 Identities=17% Similarity=0.071 Sum_probs=46.1
Q ss_pred hccCHHHHHHHHHHhCCCccCCCccccCCCCceeEEeCC-ccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCeEE
Q psy17482 19 RKASHFFAKQNAEYKGVQRYIPPRLSPEDRGQIGVEIGE-SVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVT 97 (353)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dGE~~v~i~~-~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~i~ 97 (353)
....-.+|..+|..||++.+ . .+...|+..+.... -.+|++|+||...-. .=-.+.-+++.+++.||+.|.
T Consensus 66 ~~gGi~~A~~la~~L~~~~i-~---~~k~~~~~~~~~~~~l~~G~~VLIVDDIi~----TG~Tl~~a~~~l~~~Ga~vv~ 137 (187)
T TIGR01367 66 AMGGVILGYEVARQLSVRSI-F---AEREGGGMKLRRGFAVKPGEKFVAVEDVVT----TGGSLLEAIRAIEGQGGQVVG 137 (187)
T ss_pred ccCcHHHHHHHHHHhCCCeE-E---EEEeCCcEEEeecccCCCCCEEEEEEeeec----chHHHHHHHHHHHHcCCeEEE
Confidence 34567889999999998731 1 12233666655443 358999999975321 222344556778999998763
Q ss_pred E
Q psy17482 98 A 98 (353)
Q Consensus 98 ~ 98 (353)
+
T Consensus 138 ~ 138 (187)
T TIGR01367 138 L 138 (187)
T ss_pred E
Confidence 3
No 129
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=58.71 E-value=20 Score=37.26 Aligned_cols=77 Identities=17% Similarity=0.152 Sum_probs=46.2
Q ss_pred ccCHHHHHHHHHHhCCCccCCCccc------cC--CCC---c----eeEE-eCCccCCceEEEEecCCCCCchHHHHHHH
Q psy17482 20 KASHFFAKQNAEYKGVQRYIPPRLS------PE--DRG---Q----IGVE-IGESVRGEDVYIVQSGSGEVNDNLMELLI 83 (353)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~------~f--~dG---E----~~v~-i~~~vrg~dv~iiqs~~~~~nd~lmeLll 83 (353)
.+...+|..+|+.+|++ +.+.-+. .| ++. + .... +.+.++|+.|++|....- --.. +--
T Consensus 292 ~s~~~~A~~~a~~~gip-~~~~lik~~~~~rt~~~~~~~~R~~~v~~~f~~~~~~i~gk~VlLVDDvit--tGtT--l~~ 366 (471)
T PRK06781 292 DSSISAAIGYAEATGIP-YELGLIKNRYVGRTFIQPSQELREQGVKMKLSAVRGVVEGKRVVMIDDSIV--RGTT--SKR 366 (471)
T ss_pred hhHHHHHHHHHHHhCCC-cccceEEEccCCCCCcCCCHHHHHHHHhcceeccccccCCceEEEEeceec--cchH--HHH
Confidence 34556799999999997 3221100 11 121 1 1222 346688999999964211 0112 234
Q ss_pred HHHHHhhhCCCeEEEEee
Q psy17482 84 MINACKIASASRVTAVIP 101 (353)
Q Consensus 84 ~~~a~r~~~a~~i~~viP 101 (353)
++.+||++||++|.+.+-
T Consensus 367 ~~~~Lk~aGA~eV~v~i~ 384 (471)
T PRK06781 367 IVRMLREAGATEVHVRIA 384 (471)
T ss_pred HHHHHHHcCCcEEEEEEC
Confidence 778999999999998864
No 130
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=58.00 E-value=20 Score=37.12 Aligned_cols=81 Identities=16% Similarity=0.121 Sum_probs=48.3
Q ss_pred hccCHHHHHHHHHHhCCCccCCC-cccc-----C--CCC---c--eeEE---eCCccCCceEEEEecCCCCCchHHHHHH
Q psy17482 19 RKASHFFAKQNAEYKGVQRYIPP-RLSP-----E--DRG---Q--IGVE---IGESVRGEDVYIVQSGSGEVNDNLMELL 82 (353)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----f--~dG---E--~~v~---i~~~vrg~dv~iiqs~~~~~nd~lmeLl 82 (353)
|.....+|..+|+.+|++ +... ...+ | ++. + ..++ +...++|++|+||-..-. .-..| .
T Consensus 296 Pdsg~~~A~~~A~~lgip-~~~~l~r~~~~~rtfi~~~q~~R~~~~~~k~~~~~~~v~gk~VlLVDD~It--TGtTl--~ 370 (469)
T PRK05793 296 PDSGIPAAIGYAEASGIP-YGIGFIKNKYVGRTFIAPSQELRERAVRVKLNPLKVNVEGKRVVLIDDSIV--RGTTS--K 370 (469)
T ss_pred CccHHHHHHHHHHHhCCC-EeeeEEEeeeccccccChhHhhhhhhheEecccCccccCCCEEEEEccccC--chHHH--H
Confidence 344567899999999998 4221 0000 0 111 1 1222 235689999999964211 11223 3
Q ss_pred HHHHHHhhhCCCeEEEEeeCCC
Q psy17482 83 IMINACKIASASRVTAVIPCFP 104 (353)
Q Consensus 83 l~~~a~r~~~a~~i~~viPY~~ 104 (353)
-++.+||++||++|.+.+-.=|
T Consensus 371 ~~~~~Lr~aGAk~V~~~~~~p~ 392 (469)
T PRK05793 371 RLVELLRKAGAKEVHFRVSSPP 392 (469)
T ss_pred HHHHHHHHcCCCEEEEEEECCC
Confidence 4788999999999998764433
No 131
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=57.85 E-value=22 Score=31.00 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcCCCEEEEecC
Q psy17482 263 TICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTNT 309 (353)
Q Consensus 263 Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~id~ii~TnT 309 (353)
.+..+.+.|+++|+..|.+++ =|+.+.+-++.|++.++++||...|
T Consensus 79 l~~~lve~lre~G~~~i~v~~-GGvip~~d~~~l~~~G~~~if~pgt 124 (143)
T COG2185 79 LVPGLVEALREAGVEDILVVV-GGVIPPGDYQELKEMGVDRIFGPGT 124 (143)
T ss_pred HHHHHHHHHHHhCCcceEEee-cCccCchhHHHHHHhCcceeeCCCC
Confidence 456788999999999999554 4788887789999999999996544
No 132
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=57.54 E-value=23 Score=30.14 Aligned_cols=49 Identities=8% Similarity=0.188 Sum_probs=37.7
Q ss_pred ChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcCCCEEEEecC
Q psy17482 260 TCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTNT 309 (353)
Q Consensus 260 TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~id~ii~TnT 309 (353)
+...+.+.++.|+++|...+.+++ -|...+.-.+.+.+.|++.+|.+.|
T Consensus 66 ~~~~~~~~~~~L~~~g~~~i~viv-GG~~~~~~~~~l~~~Gvd~~~~~gt 114 (132)
T TIGR00640 66 HLTLVPALRKELDKLGRPDILVVV-GGVIPPQDFDELKEMGVAEIFGPGT 114 (132)
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEE-eCCCChHhHHHHHHCCCCEEECCCC
Confidence 556788889999999987665555 4555555577788899999997777
No 133
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=56.41 E-value=47 Score=29.17 Aligned_cols=74 Identities=20% Similarity=0.161 Sum_probs=44.0
Q ss_pred cCHHHHHHHHHHhCCCccCCCccccC------------CCCceeEEe--CCccCCceEEEEecCCCCCchHHHHHHHHHH
Q psy17482 21 ASHFFAKQNAEYKGVQRYIPPRLSPE------------DRGQIGVEI--GESVRGEDVYIVQSGSGEVNDNLMELLIMIN 86 (353)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~f------------~dGE~~v~i--~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~ 86 (353)
..-.+|..+|+.||++ +...+-... .+|+-.+.+ ....+|+.|+||-.... .==-+.-+++
T Consensus 56 ~G~~~A~~la~~L~~~-~~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDIit----TG~Tl~~a~~ 130 (169)
T TIGR01090 56 RGFIFGAALAYKLGVG-FVPVRKPGKLPGETISASYDLEYGKDQLEIHKDAIKPGQRVLIVDDLLA----TGGTAEATDE 130 (169)
T ss_pred ccHHHHHHHHHHHCCC-EEEEEeCCCCCCceeeeEEeeccCceEEEEehhhcCCcCEEEEEecccc----chHHHHHHHH
Confidence 3347899999999997 322221111 233323333 33468999999965322 1113445678
Q ss_pred HHhhhCCCeEEEE
Q psy17482 87 ACKIASASRVTAV 99 (353)
Q Consensus 87 a~r~~~a~~i~~v 99 (353)
.++++||+.+.++
T Consensus 131 ~L~~~Ga~~v~~~ 143 (169)
T TIGR01090 131 LIRKLGGEVVEAA 143 (169)
T ss_pred HHHHcCCEEEEEE
Confidence 8889999876543
No 134
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=56.21 E-value=38 Score=30.77 Aligned_cols=78 Identities=19% Similarity=0.075 Sum_probs=45.8
Q ss_pred hhccCHHHHHHHHHHhCCCccCCCccccCCCCce-----eEEe-CCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhh
Q psy17482 18 LRKASHFFAKQNAEYKGVQRYIPPRLSPEDRGQI-----GVEI-GESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIA 91 (353)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dGE~-----~v~i-~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~ 91 (353)
.....-.+|..+|..||.+ +....-.++..|+. .+.. ...++|++|+||.-.-. .=--+.-++++++++
T Consensus 92 i~~gG~~~A~~lA~~L~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~gk~VlIVDDVit----TG~Tl~~ai~~l~~~ 166 (200)
T PRK02277 92 IAKSGVPLATLVADELGKD-LAIYHPKKWDHGEGEKKTGSFSRNFASVEGKRCVIVDDVIT----SGTTMKETIEYLKEH 166 (200)
T ss_pred eccCCHHHHHHHHHHhCCC-cEEEecccccccccccccceeccccccCCcCEEEEEeeccC----chHHHHHHHHHHHHc
Confidence 3445778899999999987 32211122222221 1111 14689999999975321 111334556788899
Q ss_pred CCCeEEEEe
Q psy17482 92 SASRVTAVI 100 (353)
Q Consensus 92 ~a~~i~~vi 100 (353)
||+.+.++.
T Consensus 167 Ga~~v~v~v 175 (200)
T PRK02277 167 GGKPVAVVV 175 (200)
T ss_pred CCEEEEEEE
Confidence 999885544
No 135
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=55.78 E-value=70 Score=28.90 Aligned_cols=49 Identities=22% Similarity=0.274 Sum_probs=32.9
Q ss_pred CCCceeEEe--CCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCeEEEE
Q psy17482 47 DRGQIGVEI--GESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAV 99 (353)
Q Consensus 47 ~dGE~~v~i--~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~i~~v 99 (353)
+.|+..+.- .++++|+||.||...-. .=.-|-.+.+-|+..+|+++.++
T Consensus 77 ssg~v~i~kDld~di~grdVLiVeDIiD----sG~TLs~i~~~l~~r~a~sv~i~ 127 (178)
T COG0634 77 SSGEVKILKDLDEDIKGRDVLIVEDIID----SGLTLSKVRDLLKERGAKSVRIA 127 (178)
T ss_pred cCCceEEecccccCCCCCeEEEEecccc----cChhHHHHHHHHHhCCCCeEEEE
Confidence 567777663 58999999999975321 11133445566677889998665
No 136
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=53.56 E-value=1.8e+02 Score=26.48 Aligned_cols=71 Identities=15% Similarity=0.136 Sum_probs=40.1
Q ss_pred cchHHHHHHHHHHcCCCEEEEEcCChhHHhcccCccccccccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHc
Q psy17482 141 PISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRL 220 (353)
Q Consensus 141 ~isak~vA~lL~~~g~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~L 220 (353)
+.+...+++.++..|++.++..+..........+ ..+.+.+.+.. +-|++++-..+...-...+.+ .
T Consensus 145 ~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~---------~~~i~~i~~~~---~ipvi~~GGi~~~~di~~~~~-~ 211 (234)
T cd04732 145 EVSLEELAKRFEELGVKAIIYTDISRDGTLSGPN---------FELYKELAAAT---GIPVIASGGVSSLDDIKALKE-L 211 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCC---------HHHHHHHHHhc---CCCEEEecCCCCHHHHHHHHH-C
Confidence 3466678888999999999998875543322122 23445555432 356776554444433333322 3
Q ss_pred CCcE
Q psy17482 221 NVEF 224 (353)
Q Consensus 221 g~~~ 224 (353)
|..-
T Consensus 212 Ga~g 215 (234)
T cd04732 212 GVAG 215 (234)
T ss_pred CCCE
Confidence 5543
No 137
>PRK11595 DNA utilization protein GntX; Provisional
Probab=53.43 E-value=32 Score=31.88 Aligned_cols=74 Identities=14% Similarity=0.096 Sum_probs=43.9
Q ss_pred cCHHHHHHHHHHhCCCccCCCccc---------------cCCCCceeEEeCCccCCceEEEEecCCCCCchHHHHHHHHH
Q psy17482 21 ASHFFAKQNAEYKGVQRYIPPRLS---------------PEDRGQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMI 85 (353)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~---------------~f~dGE~~v~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~ 85 (353)
....+|+.+++.+|++. ....+. +..+-.-...+..+++|++|+||...... =--+.-++
T Consensus 133 q~~~la~~la~~~~~~~-~~~~l~r~~~~~~q~~l~~~~R~~n~~~~f~~~~~~~~~~vllvDDv~tT----G~Tl~~~~ 207 (227)
T PRK11595 133 QSDLLCRPLARWLGCDY-DSEALTRTRATATQHFLSARLRKRNLKNAFRLELPVQGQHMAIVDDVVTT----GSTVAEIA 207 (227)
T ss_pred HHHHHHHHHHHHHCCCC-cccceEEecCCCCcccCCHHHHhhhhhhhhccCCCCCCCEEEEEeeeecc----hHHHHHHH
Confidence 44567999999999862 111011 11111112334467899999998643211 11344567
Q ss_pred HHHhhhCCCeEEEE
Q psy17482 86 NACKIASASRVTAV 99 (353)
Q Consensus 86 ~a~r~~~a~~i~~v 99 (353)
++|+++|+++|.++
T Consensus 208 ~~L~~~g~~~V~~~ 221 (227)
T PRK11595 208 QLLLRNGAASVQVW 221 (227)
T ss_pred HHHHHcCCcEEEEE
Confidence 88899999998765
No 138
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=51.64 E-value=29 Score=36.09 Aligned_cols=76 Identities=20% Similarity=0.153 Sum_probs=45.6
Q ss_pred cCHHHHHHHHHHhCCCccCCCccc------cCC--C---Cce----eEE-eCCccCCceEEEEecCCCCCchHHHHHHHH
Q psy17482 21 ASHFFAKQNAEYKGVQRYIPPRLS------PED--R---GQI----GVE-IGESVRGEDVYIVQSGSGEVNDNLMELLIM 84 (353)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~------~f~--d---GE~----~v~-i~~~vrg~dv~iiqs~~~~~nd~lmeLll~ 84 (353)
++-.+|..+|+.+|++ +.+.-+. .|. + .+. ... +.+.++|+.|++|.... +--..+ --+
T Consensus 293 s~~~~A~gla~~~gip-~~~~lik~~~~~Rt~i~~~~~~R~~nv~~~f~~~~~~v~gk~VlLVDDsi--ttGtTl--~~~ 367 (475)
T PRK07631 293 SSISAAIGYAEATGIP-YELGLIKNRYVGRTFIQPSQALREQGVKMKLSPVRGVVEGKRVVMVDDSI--VRGTTS--RRI 367 (475)
T ss_pred hHHHHHHHHHHHHCCC-cccceEEEecCCCCCcCCCHHHHHHHHhhhhhhcccccCCceEEEEeeee--ccHHHH--HHH
Confidence 3446899999999998 3321111 121 1 111 111 24678899999996421 112222 256
Q ss_pred HHHHhhhCCCeEEEEee
Q psy17482 85 INACKIASASRVTAVIP 101 (353)
Q Consensus 85 ~~a~r~~~a~~i~~viP 101 (353)
+.+||++||++|.+.+-
T Consensus 368 ~~~L~~aGA~eV~v~~~ 384 (475)
T PRK07631 368 VTMLREAGATEVHVRIS 384 (475)
T ss_pred HHHHHHcCCCEEEEEEe
Confidence 78999999999998864
No 139
>PLN02293 adenine phosphoribosyltransferase
Probab=51.39 E-value=67 Score=28.99 Aligned_cols=73 Identities=22% Similarity=0.235 Sum_probs=42.7
Q ss_pred cCHHHHHHHHHHhCCCccCCCccccC------------CCCceeEEeC-Ccc-CCceEEEEecCCCCCchHHHHHHHHHH
Q psy17482 21 ASHFFAKQNAEYKGVQRYIPPRLSPE------------DRGQIGVEIG-ESV-RGEDVYIVQSGSGEVNDNLMELLIMIN 86 (353)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~f------------~dGE~~v~i~-~~v-rg~dv~iiqs~~~~~nd~lmeLll~~~ 86 (353)
..-.+|..+|..||++ +...+-.+. ..|+-.+.+. ..+ +|+.|+||...-.. ==-+.-+++
T Consensus 72 ~Gi~lA~~lA~~Lg~p-~v~~rK~~k~~~~~~~~~~~~~~g~~~l~l~~~~i~~G~rVlIVDDvitT----G~T~~~~~~ 146 (187)
T PLN02293 72 RGFIFGPPIALAIGAK-FVPLRKPGKLPGEVISEEYVLEYGTDCLEMHVGAVEPGERALVIDDLIAT----GGTLCAAIN 146 (187)
T ss_pred CchHHHHHHHHHHCCC-EEEEEecCCCCCceEEEEEeccCCceEEEEEcCccCCCCEEEEEeccccc----hHHHHHHHH
Confidence 4456899999999997 322222221 2233222221 344 79999999753221 113445668
Q ss_pred HHhhhCCCeEEE
Q psy17482 87 ACKIASASRVTA 98 (353)
Q Consensus 87 a~r~~~a~~i~~ 98 (353)
.++++|++.+.+
T Consensus 147 ~l~~~Ga~~v~~ 158 (187)
T PLN02293 147 LLERAGAEVVEC 158 (187)
T ss_pred HHHHCCCEEEEE
Confidence 889999986644
No 140
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=49.48 E-value=33 Score=25.73 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=28.2
Q ss_pred CCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEE
Q psy17482 246 VKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAI 282 (353)
Q Consensus 246 v~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~ 282 (353)
-+++.+++++ .+|.....++..|++.|-+.|+.+
T Consensus 54 ~~~~~iv~~c---~~g~~a~~~~~~l~~~G~~~v~~l 87 (100)
T smart00450 54 DKDKPVVVYC---RSGNRSAKAAWLLRELGFKNVYLL 87 (100)
T ss_pred CCCCeEEEEe---CCCcHHHHHHHHHHHcCCCceEEe
Confidence 3577899988 578888999999999999987654
No 141
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=47.83 E-value=37 Score=29.63 Aligned_cols=34 Identities=26% Similarity=0.234 Sum_probs=25.9
Q ss_pred ceEEEEecCCCCCchHHHHH-HHHHHHHhhhCCCeEEEE
Q psy17482 62 EDVYIVQSGSGEVNDNLMEL-LIMINACKIASASRVTAV 99 (353)
Q Consensus 62 ~dv~iiqs~~~~~nd~lmeL-ll~~~a~r~~~a~~i~~v 99 (353)
-||+.++|++. .-++| --++++||+.|+..|.++
T Consensus 64 v~vIgvSsl~g----~h~~l~~~lve~lre~G~~~i~v~ 98 (143)
T COG2185 64 VDVIGVSSLDG----GHLTLVPGLVEALREAGVEDILVV 98 (143)
T ss_pred CCEEEEEeccc----hHHHHHHHHHHHHHHhCCcceEEe
Confidence 48899998764 33344 378999999999999943
No 142
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=45.68 E-value=95 Score=32.35 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=47.4
Q ss_pred hccCHHHHHHHHHHhCCCccCC--Cc-------cccC----CCCceeEEe---CCccCCceEEEEecCCCCCchHHHHHH
Q psy17482 19 RKASHFFAKQNAEYKGVQRYIP--PR-------LSPE----DRGQIGVEI---GESVRGEDVYIVQSGSGEVNDNLMELL 82 (353)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~f----~dGE~~v~i---~~~vrg~dv~iiqs~~~~~nd~lmeLl 82 (353)
|.+...+|..+++.+|++ +.. .+ +.+- .+..+.+.. .+.++|++|+||...... - --|.
T Consensus 303 P~sg~~~A~~la~~lgip-~~~~lir~~y~grt~i~~~q~~r~~~v~~k~~~~~~~~~gk~vvlvDD~i~t--G--~Tl~ 377 (479)
T PRK09123 303 PDSGVPAAIGYAQESGIP-FELGIIRNHYVGRTFIQPTQQIRNLGVKLKHNANRAVIEGKRVVLVDDSIVR--G--TTSR 377 (479)
T ss_pred CccHHHHHHHHHHhcCCC-eeheEEEEeecCccccccccccccccEEEEecccccccCCCEEEEEeceeCc--h--HHHH
Confidence 344566899999999998 321 11 0110 122223222 234889999999753211 1 1344
Q ss_pred HHHHHHhhhCCCeEEEEe
Q psy17482 83 IMINACKIASASRVTAVI 100 (353)
Q Consensus 83 l~~~a~r~~~a~~i~~vi 100 (353)
-+++.||++||++|.+.+
T Consensus 378 ~~~~~l~~~Ga~~v~~~~ 395 (479)
T PRK09123 378 KIVQMLRDAGAKEVHLRI 395 (479)
T ss_pred HHHHHHHHcCCCEEEEEE
Confidence 688899999999999987
No 143
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=45.46 E-value=38 Score=26.23 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=26.7
Q ss_pred CCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEE
Q psy17482 247 KDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAI 282 (353)
Q Consensus 247 ~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~ 282 (353)
++++++++++ +|.+...++..|++.|-.+|+.+
T Consensus 55 ~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~~l 87 (96)
T cd01529 55 RATRYVLTCD---GSLLARFAAQELLALGGKPVALL 87 (96)
T ss_pred CCCCEEEEeC---ChHHHHHHHHHHHHcCCCCEEEe
Confidence 4678899864 78888888999999999887654
No 144
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=45.33 E-value=42 Score=24.86 Aligned_cols=35 Identities=29% Similarity=0.312 Sum_probs=28.4
Q ss_pred CCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEE
Q psy17482 246 VKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAIL 283 (353)
Q Consensus 246 v~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~ 283 (353)
-+++.|+++++- |.....++..|++.|-.+|+.+.
T Consensus 48 ~~~~~vv~~c~~---~~~a~~~~~~l~~~G~~~v~~l~ 82 (89)
T cd00158 48 DKDKPIVVYCRS---GNRSARAAKLLRKAGGTNVYNLE 82 (89)
T ss_pred CCCCeEEEEeCC---CchHHHHHHHHHHhCcccEEEec
Confidence 367789998876 77888899999999988887653
No 145
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=45.15 E-value=98 Score=27.30 Aligned_cols=74 Identities=15% Similarity=0.052 Sum_probs=45.5
Q ss_pred hhccCHHHHHHHHHHhCCCccCC--Ccc-cc--CCCCceeEEeCCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhC
Q psy17482 18 LRKASHFFAKQNAEYKGVQRYIP--PRL-SP--EDRGQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIAS 92 (353)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~--f~dGE~~v~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~ 92 (353)
+....-.+|..+|..|+.+ ..+ ..+ .+ ...|+.....++..+|+.|+||.-.. +.=-.+.-+++.++++|
T Consensus 61 ~~~gG~~~A~~la~~l~~~-~~~~~~~~~rk~~k~~g~~~~~~g~~~~g~~VlIVDDvi----~TG~Tl~~a~~~l~~~G 135 (173)
T TIGR00336 61 PALGGIPIATAVSVKLAKP-GGDIPLCFNRKEAKDHGEGGNIEGELLEGDKVVVVEDVI----TTGTSILEAVEIIQAAG 135 (173)
T ss_pred cccChHHHHHHHHHHhcCc-CCCceEEEEcCCcccCCCCCceecCCCCCCEEEEEeccc----cChHHHHHHHHHHHHcC
Confidence 3445667899999999987 111 111 11 13355544445556899999997532 22224556678889999
Q ss_pred CCeE
Q psy17482 93 ASRV 96 (353)
Q Consensus 93 a~~i 96 (353)
++-+
T Consensus 136 a~v~ 139 (173)
T TIGR00336 136 GQVA 139 (173)
T ss_pred CeEE
Confidence 8644
No 146
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=43.73 E-value=35 Score=27.57 Aligned_cols=78 Identities=18% Similarity=0.122 Sum_probs=49.6
Q ss_pred ccCHHHHHHHHHHhCCCccCCCccc-----------cCCCCceeEEeCCccCCceEEEEecCCCCCchHHHHHHHHHHHH
Q psy17482 20 KASHFFAKQNAEYKGVQRYIPPRLS-----------PEDRGQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINAC 88 (353)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~f~dGE~~v~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~ 88 (353)
...-.+|..+|+.|+.+........ .-.+........+.++|+.|+||-.....- . -+.-+++.+
T Consensus 36 ~~G~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~vliVDDvi~tG-~---Tl~~~~~~L 111 (125)
T PF00156_consen 36 RGGIPLAAALARALGIPLVFVRKRKSYYPGSDKTSREKNNQELFIIDKEDIKGKRVLIVDDVIDTG-G---TLKEAIELL 111 (125)
T ss_dssp TTTHHHHHHHHHHHTHEEEEEEEEEEEESEEEEEEEETEEEEEEEEESSSGTTSEEEEEEEEESSS-H---HHHHHHHHH
T ss_pred hccHHHHHHHHHHhCCCccceeeeecccccchhhhhccCceEEeecccccccceeEEEEeeeEccc-H---HHHHHHHHH
Confidence 3456799999999999842221111 112223344566889999999997532111 2 344567788
Q ss_pred hhhCCCeEEEEee
Q psy17482 89 KIASASRVTAVIP 101 (353)
Q Consensus 89 r~~~a~~i~~viP 101 (353)
++.|++.|.+.++
T Consensus 112 ~~~g~~~v~~~vl 124 (125)
T PF00156_consen 112 KEAGAKVVGVAVL 124 (125)
T ss_dssp HHTTBSEEEEEEE
T ss_pred HhCCCcEEEEEEE
Confidence 9999999877654
No 147
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=43.12 E-value=64 Score=29.17 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHhCCCccCCCccccCCCCceeEEeCCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCeEEEEee
Q psy17482 22 SHFFAKQNAEYKGVQRYIPPRLSPEDRGQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIP 101 (353)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~f~dGE~~v~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~i~~viP 101 (353)
.-.+|..+|..+|++ +...+-..-.-|+-....+.-.+|+.|+||...-..- . -++-+++++|++|++ |..++-
T Consensus 84 GiplA~~vA~~l~~p-~v~vRK~~k~~g~~~~~~g~~~~g~rVlIVDDVitTG-g---S~~~~i~~l~~~Ga~-V~~v~v 157 (187)
T PRK13810 84 GVPLATAVSLETGLP-LLIVRKSVKDYGTGSRFVGDLKPEDRIVMLEDVTTSG-G---SVREAIEVVREAGAY-IKYVIT 157 (187)
T ss_pred hHHHHHHHHHHhCCC-EEEEecCCCccCCCceEEccCCCcCEEEEEEeccCCC-h---HHHHHHHHHHHCCCE-EEEEEE
Confidence 445888999999988 3222222123344333333345899999997431111 1 344566788888875 554444
Q ss_pred CC
Q psy17482 102 CF 103 (353)
Q Consensus 102 Y~ 103 (353)
.+
T Consensus 158 lv 159 (187)
T PRK13810 158 VV 159 (187)
T ss_pred EE
Confidence 44
No 148
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=43.05 E-value=48 Score=33.59 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=28.0
Q ss_pred CCCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEe
Q psy17482 245 DVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTH 285 (353)
Q Consensus 245 dv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tH 285 (353)
.++||+|.|+ ..+......++.|.+.|...+.+++.+
T Consensus 296 ~l~gk~v~i~----~~~~~~~~l~~~L~e~G~~v~~v~~~~ 332 (428)
T cd01965 296 YLGGKRVAIA----GDPDLLLGLSRFLLEMGAEPVAAVTGT 332 (428)
T ss_pred HhcCCEEEEE----cChHHHHHHHHHHHHcCCcceEEEEcC
Confidence 4689999877 234456678899999999987777743
No 149
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=42.98 E-value=82 Score=28.95 Aligned_cols=75 Identities=5% Similarity=0.003 Sum_probs=43.5
Q ss_pred hhccCHHHHHHHHHHhCCCccCCCccccCCCCce-eEEeCC-ccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCe
Q psy17482 18 LRKASHFFAKQNAEYKGVQRYIPPRLSPEDRGQI-GVEIGE-SVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASR 95 (353)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dGE~-~v~i~~-~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~ 95 (353)
+....-.+|..+|..+|++ +...+=..-..|+. .+++.. ..+|++|+||...-..- . -+.-.+++++.+|++-
T Consensus 74 ~~~~Gi~~A~~vA~~l~~p-~~~~RK~~K~~G~~~~~~~~g~~~~g~~VlIVDDViTTG-~---Ti~~a~~~L~~~G~~v 148 (206)
T PRK13809 74 VPYTALTLATSISLKYNIP-MVLRRKELKNVDPSDAIKVEGLFTPGQTCLVINDMVSSG-K---SIIETAVALEEEGLVV 148 (206)
T ss_pred ecCccHHHHHHHHHHhCCC-EEEEeCCCCCCCCcCEEEEccccCCCCEEEEEEeccccC-H---HHHHHHHHHHHCCCEE
Confidence 3344667899999999998 33322211123443 344433 35899999997421100 1 2345667888888875
Q ss_pred EE
Q psy17482 96 VT 97 (353)
Q Consensus 96 i~ 97 (353)
+.
T Consensus 149 v~ 150 (206)
T PRK13809 149 RE 150 (206)
T ss_pred EE
Confidence 43
No 150
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=42.17 E-value=40 Score=25.77 Aligned_cols=33 Identities=27% Similarity=0.318 Sum_probs=27.8
Q ss_pred CCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEE
Q psy17482 247 KDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAI 282 (353)
Q Consensus 247 ~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~ 282 (353)
+++.++++.. +|.+...++..|++.|-..|+.+
T Consensus 55 ~~~~ivv~c~---~g~~s~~a~~~l~~~G~~~v~~l 87 (96)
T cd01444 55 RDRPVVVYCY---HGNSSAQLAQALREAGFTDVRSL 87 (96)
T ss_pred CCCCEEEEeC---CCChHHHHHHHHHHcCCceEEEc
Confidence 5678888877 88899999999999999887643
No 151
>PRK06031 phosphoribosyltransferase; Provisional
Probab=41.17 E-value=79 Score=29.67 Aligned_cols=72 Identities=14% Similarity=0.070 Sum_probs=40.7
Q ss_pred cCHHHHHHHHHHhCCCccCCCccc-cCC---------------CCceeEEeC----CccCCceEEEEecCCCCCchHHHH
Q psy17482 21 ASHFFAKQNAEYKGVQRYIPPRLS-PED---------------RGQIGVEIG----ESVRGEDVYIVQSGSGEVNDNLME 80 (353)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~-~f~---------------dGE~~v~i~----~~vrg~dv~iiqs~~~~~nd~lme 80 (353)
..-.+|..+|+.||.+++.|.... ++. +......+. ..++|+.|+||--.-..- . -
T Consensus 94 ~Gi~lA~~lA~~Lg~~~~vpl~~~rK~~~~~~l~~~~~sitt~~~~~~~~l~~~~~~~~~GkrVLIVDDVitTG-~---T 169 (233)
T PRK06031 94 LGLTLAAAVARKLGHTRYVPLGTSRKFWYRDELSVPLSSITTPDQGKRLYIDPRMLPLLEGRRVALIDDVISSG-A---S 169 (233)
T ss_pred CCHHHHHHHHHHHCCCCceEEEEccccccccccccceeeeeccCccceEEecccccccCCCCEEEEEEeEcccc-H---H
Confidence 456789999999998644443322 111 111112222 246899999996421110 1 2
Q ss_pred HHHHHHHHhhhCCCeE
Q psy17482 81 LLIMINACKIASASRV 96 (353)
Q Consensus 81 Lll~~~a~r~~~a~~i 96 (353)
+.-+++.++++|++-+
T Consensus 170 l~aa~~lL~~~Ga~Vv 185 (233)
T PRK06031 170 IVAGLRLLAACGIEPA 185 (233)
T ss_pred HHHHHHHHHHcCCeEE
Confidence 3355677888998644
No 152
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=40.94 E-value=41 Score=34.68 Aligned_cols=36 Identities=19% Similarity=0.137 Sum_probs=27.2
Q ss_pred CCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEe
Q psy17482 246 VKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTH 285 (353)
Q Consensus 246 v~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tH 285 (353)
+.||+|.|. ..+......++.|.+.|..-+.+++++
T Consensus 309 l~gkrvai~----~~~~~~~~la~~L~elG~~v~~~~~~~ 344 (455)
T PRK14476 309 FGGKRVAIA----AEPDLLLALGSFLAEMGAEIVAAVTTT 344 (455)
T ss_pred hcCCEEEEE----eCHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 579998866 244456677799999999988777754
No 153
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=39.87 E-value=1.3e+02 Score=27.29 Aligned_cols=73 Identities=23% Similarity=0.231 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHhCCC--ccCCCccccC--CC--CceeEEeCCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCe
Q psy17482 22 SHFFAKQNAEYKGVQ--RYIPPRLSPE--DR--GQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASR 95 (353)
Q Consensus 22 ~~~~~~~~~~~~~~~--~~~~~~~~~f--~d--GE~~v~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~ 95 (353)
.-.||.++|..||.+ .|.|.+.... ++ |-+.=++ .+|.||+++||...-.. -..++|. +..+|+.|++.
T Consensus 97 GvPlAtmvA~elg~elaiY~PrK~~~de~~~~~G~iS~NF-a~V~gK~cvIVDDvitt-G~Ti~E~---Ie~lke~g~kp 171 (203)
T COG0856 97 GVPLATMVAYELGKELAIYHPRKHRKDEGAGKGGSISSNF-ASVEGKRCVIVDDVITT-GSTIKET---IEQLKEEGGKP 171 (203)
T ss_pred CccHHHHHHHHhCCceEEEecccccccccCCcCceeeccc-ccccCceEEEEeccccc-ChhHHHH---HHHHHHcCCCc
Confidence 346899999999987 3666665532 22 4333333 58999999999853211 2456664 57889999987
Q ss_pred EEEE
Q psy17482 96 VTAV 99 (353)
Q Consensus 96 i~~v 99 (353)
+.++
T Consensus 172 v~v~ 175 (203)
T COG0856 172 VLVV 175 (203)
T ss_pred EEEE
Confidence 6554
No 154
>KOG0814|consensus
Probab=39.62 E-value=34 Score=31.12 Aligned_cols=44 Identities=30% Similarity=0.493 Sum_probs=38.0
Q ss_pred EEeecCCCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEec
Q psy17482 240 MVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHG 286 (353)
Q Consensus 240 ~~~~gdv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHg 286 (353)
..+.+|.+.+..+|||-+..| ...-++.+++.|-+-+|++-||-
T Consensus 23 tYll~d~~~~~AviIDPV~et---~~RD~qlikdLgl~LiYa~NTH~ 66 (237)
T KOG0814|consen 23 TYLLGDHKTGKAVIIDPVLET---VSRDAQLIKDLGLDLIYALNTHV 66 (237)
T ss_pred EEEeeeCCCCceEEecchhhc---ccchHHHHHhcCceeeeeeccee
Confidence 357889999999999999975 46778889999999999999983
No 155
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=39.41 E-value=1.1e+02 Score=28.26 Aligned_cols=74 Identities=19% Similarity=0.204 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHhC---CCc-cCCCccccCCC-----CceeEE--eCCccCCceEEEEecCCCCCchHHHHHHHHHHHHhh
Q psy17482 22 SHFFAKQNAEYKG---VQR-YIPPRLSPEDR-----GQIGVE--IGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKI 90 (353)
Q Consensus 22 ~~~~~~~~~~~~~---~~~-~~~~~~~~f~d-----GE~~v~--i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~ 90 (353)
...||..+++.|+ ++. ..-..++.+-| |++.+. +..+++|++|+||.-. -|.=--|..+++.|+.
T Consensus 68 g~~fa~dL~r~L~~~~~~~~vdfi~vssY~~~~~s~g~~~i~~~~~~~i~gk~VLIVDDI----vDTG~TL~~v~~~l~~ 143 (211)
T PTZ00271 68 SFIFTADLARFLADEGVPVKVEFICASSYGTGVETSGQVRMLLDVRDSVENRHILIVEDI----VDSAITLQYLMRFMLA 143 (211)
T ss_pred CHHHHHHHHHHhcccCCCeeEEEEEEEecCCCCcccCceEEecCCCCCCCCCEEEEEecc----cCCHHHHHHHHHHHHh
Confidence 4567778888886 330 11123333322 555543 4568999999999753 2333355566777887
Q ss_pred hCCCeEEEE
Q psy17482 91 ASASRVTAV 99 (353)
Q Consensus 91 ~~a~~i~~v 99 (353)
.++++|.+.
T Consensus 144 ~~p~svk~a 152 (211)
T PTZ00271 144 KKPASLKTV 152 (211)
T ss_pred cCCCEEEEE
Confidence 888898443
No 156
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=39.40 E-value=3.6e+02 Score=27.73 Aligned_cols=73 Identities=11% Similarity=0.091 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCCEEEEEcCChhHHhcccCccc--cccccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHc
Q psy17482 145 KLVANMLSVAGADHIITMDLHASQIQGFFDIPV--DNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRL 220 (353)
Q Consensus 145 k~vA~lL~~~g~d~VitvDlHs~~~~~~F~ip~--~~l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~L 220 (353)
+.+++.+...++|.|+.+..++..+...+.... ........+.+++.+... ++++|+---..+..+- .+.+.|
T Consensus 390 ~~~~~~~~~~~~d~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~gd~vL~kGSr~~~le-~i~~~l 464 (479)
T PRK14093 390 RGLAEAIRANAIDLVFCCGPLMRNLWDALSSGKRGGYAEDAAALESQVVAAIR--AGDVIMVKGSLGSRMK-TIVTAL 464 (479)
T ss_pred HHHHHHHHHcCCCEEEEEchhHHHHHHhhcccccceeeCCHHHHHHHHHHhcC--CCCEEEEEcCCcCCHH-HHHHHH
Confidence 677888888889999999887654422121000 011234556667765442 2334444444455443 444544
No 157
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=39.27 E-value=51 Score=28.65 Aligned_cols=39 Identities=21% Similarity=0.401 Sum_probs=31.0
Q ss_pred cccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHh
Q psy17482 256 DMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRIN 297 (353)
Q Consensus 256 DII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~ 297 (353)
|...+...+..|.+.|+.+|++.|+.+. ..++..++.|.
T Consensus 100 Dl~~~~~~i~~a~~~L~~aG~~~if~vS---~~~~eGi~eL~ 138 (143)
T PF10662_consen 100 DLPSDDANIERAKKWLKNAGVKEIFEVS---AVTGEGIEELK 138 (143)
T ss_pred cCccchhhHHHHHHHHHHcCCCCeEEEE---CCCCcCHHHHH
Confidence 4555678899999999999999997776 55677777775
No 158
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=38.62 E-value=1e+02 Score=27.71 Aligned_cols=75 Identities=13% Similarity=0.100 Sum_probs=42.7
Q ss_pred hccCHHHHHHHHHHhCCCccCCCccccCCC------------Cce--eEEeCCccCCceEEEEecCCCCCchHHHHHHHH
Q psy17482 19 RKASHFFAKQNAEYKGVQRYIPPRLSPEDR------------GQI--GVEIGESVRGEDVYIVQSGSGEVNDNLMELLIM 84 (353)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~d------------GE~--~v~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~ 84 (353)
....-.+|..+|..++++ +...+-.+++. +.+ .+......+|++|+||.-.-..- . .+.-+
T Consensus 59 e~~Gi~lA~~vA~~l~~p-~~~~rk~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~G~rVlIVDDvitTG-~---T~~~a 133 (187)
T PRK12560 59 EDKGAPLATPVSLLSGKP-LAMARWYPYSLSELNYNVVEIGSEYFEGVVYLNGIEKGDRVAIIDDTLSTG-G---TVIAL 133 (187)
T ss_pred ccccHHHHHHHHHhhCCC-EEEeccCCCcccceeEEeeeeeccceeeeeEccCCCCcCEEEEEEeccccC-H---HHHHH
Confidence 345667899999999987 21111111111 111 13334456899999997432111 1 23556
Q ss_pred HHHHhhhCCCeEEE
Q psy17482 85 INACKIASASRVTA 98 (353)
Q Consensus 85 ~~a~r~~~a~~i~~ 98 (353)
++.++++||..+-+
T Consensus 134 i~ll~~aGa~vv~v 147 (187)
T PRK12560 134 IKAIENSGGIVSDV 147 (187)
T ss_pred HHHHHHCCCEEEEE
Confidence 78889999986544
No 159
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=38.26 E-value=3.2e+02 Score=25.09 Aligned_cols=74 Identities=16% Similarity=0.207 Sum_probs=44.2
Q ss_pred cchHHHHHHHHHHcCCCEEEEEcCChhHHhcccCccccccccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHc
Q psy17482 141 PISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRL 220 (353)
Q Consensus 141 ~isak~vA~lL~~~g~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~L 220 (353)
......+++.+...|++.|+.-+.+.......++ ..+++.+.+.. +-+++.+-......-+..+.+..
T Consensus 148 ~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~---------~~~i~~i~~~~---~~pvia~GGi~~~~di~~~l~~~ 215 (243)
T cd04731 148 GLDAVEWAKEVEELGAGEILLTSMDRDGTKKGYD---------LELIRAVSSAV---NIPVIASGGAGKPEHFVEAFEEG 215 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCCC---------HHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHHHhC
Confidence 3566788899999999999997766432222122 23445555432 45677766655555555555544
Q ss_pred CCcEEE
Q psy17482 221 NVEFAL 226 (353)
Q Consensus 221 g~~~~~ 226 (353)
|+....
T Consensus 216 g~dgv~ 221 (243)
T cd04731 216 GADAAL 221 (243)
T ss_pred CCCEEE
Confidence 555433
No 160
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=38.01 E-value=1.1e+02 Score=27.12 Aligned_cols=77 Identities=16% Similarity=0.070 Sum_probs=44.0
Q ss_pred cCHHHHHHHHHHh----CCCc-cCCCccccCCCC-----cee----EEeCCccCCceEEEEecCCCCCchHHHHHHHHHH
Q psy17482 21 ASHFFAKQNAEYK----GVQR-YIPPRLSPEDRG-----QIG----VEIGESVRGEDVYIVQSGSGEVNDNLMELLIMIN 86 (353)
Q Consensus 21 ~~~~~~~~~~~~~----~~~~-~~~~~~~~f~dG-----E~~----v~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~ 86 (353)
....+|..+++.| |++. ..-...+.+.|+ +.. ..+..+++|++|+||-... |.=--|..+++
T Consensus 41 gG~~~a~~La~~L~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~l~~~v~gr~VLIVDDIi----dTG~Tl~~~~~ 116 (176)
T PRK05205 41 RGVWLAERLAERLEQLEGVDVPVGELDITLYRDDLTKKGLHPQVKPTDIPFDIEGKRVILVDDVL----YTGRTIRAALD 116 (176)
T ss_pred CCHHHHHHHHHHHHHHcCCCCccceEEEEEeecCccccCcccccccccCCCCCCCCEEEEEeccc----CcHHHHHHHHH
Confidence 3467888899998 4431 111112222222 211 2345679999999997542 22224456678
Q ss_pred HHhhhC-CCeEEEEee
Q psy17482 87 ACKIAS-ASRVTAVIP 101 (353)
Q Consensus 87 a~r~~~-a~~i~~viP 101 (353)
.+++.| +++|.++.-
T Consensus 117 ~L~~~G~~~~v~~avL 132 (176)
T PRK05205 117 ALFDYGRPARVQLAVL 132 (176)
T ss_pred HHHhcCCCcEEEEEEE
Confidence 888888 677755443
No 161
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=38.00 E-value=83 Score=31.45 Aligned_cols=76 Identities=13% Similarity=0.239 Sum_probs=49.2
Q ss_pred HHHHHHhhhCCCeEEEEeeCCCccccccccCCCCCCCCchhHHHHhhhccccccCCCCcchHHHHHHHHHHcCCCEEEEE
Q psy17482 83 IMINACKIASASRVTAVIPCFPYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITM 162 (353)
Q Consensus 83 l~~~a~r~~~a~~i~~viPY~~YsRqDr~~~~~~~~~~~~~~~~~~~~~~~~kf~~~e~isak~vA~lL~~~g~d~Vitv 162 (353)
+...-+|+ |..++++..||++.-|.+.... -..+.+.+++...++
T Consensus 113 ~a~pLl~~-gi~s~~le~Pyyg~RkP~~Q~~----------------------------s~l~~VsDl~~~g~~------ 157 (348)
T PF09752_consen 113 MARPLLKE-GIASLILENPYYGQRKPKDQRR----------------------------SSLRNVSDLFVMGRA------ 157 (348)
T ss_pred hhhHHHHc-CcceEEEecccccccChhHhhc----------------------------ccccchhHHHHHHhH------
Confidence 35555555 9999999999998766554443 133455666543210
Q ss_pred cCChhHHhcccCccccccccHHHHHHHHHhhCCCCCCeEEEecCCCchh
Q psy17482 163 DLHASQIQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAK 211 (353)
Q Consensus 163 DlHs~~~~~~F~ip~~~l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ 211 (353)
.+.-+..|..|+.+.. .....+.+...||..
T Consensus 158 ----------------~i~E~~~Ll~Wl~~~G--~~~~g~~G~SmGG~~ 188 (348)
T PF09752_consen 158 ----------------TILESRALLHWLEREG--YGPLGLTGISMGGHM 188 (348)
T ss_pred ----------------HHHHHHHHHHHHHhcC--CCceEEEEechhHhh
Confidence 1112566888887763 457788888888885
No 162
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=37.84 E-value=1e+02 Score=29.50 Aligned_cols=140 Identities=15% Similarity=0.213 Sum_probs=83.7
Q ss_pred HHHHHcCCCEEEEEcCChhHHhcccCccccccccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEEEEE
Q psy17482 149 NMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIH 228 (353)
Q Consensus 149 ~lL~~~g~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~ 228 (353)
..+.+.-...|+++++|.--... ..+.+.+-+. ...++-||.=|+.++. ...+|.++
T Consensus 31 ~~~~~~~~~~vv~~N~e~~~~a~----------~d~e~~~~i~-------~A~li~pDG~gvV~~a--r~~~g~~~---- 87 (253)
T COG1922 31 GRIEQGKPTTVVTLNAEKVLLAR----------KDPEFREILN-------QADLILPDGIGVVRAA--RRLLGQPL---- 87 (253)
T ss_pred HHHhcCCccEEEEcCHHHHHHhc----------cCHHHHHHHh-------hcCEEccCchhHHHHH--HHHhCccC----
Confidence 33343334578887776543211 1233444332 2346778877777764 23445553
Q ss_pred EeecCCCce-EEEEeecCCCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHH----HHHhhcCCCE
Q psy17482 229 KERKKANEV-ASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAI----NRINNACFEA 303 (353)
Q Consensus 229 K~R~~~~~v-~~~~~~gdv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~----~~l~~s~id~ 303 (353)
+.|-..-+. ....-....+|++|.++= .+.+-..+|++.|++..+.-..+.+-||.|+..-. ++|..++.|-
T Consensus 88 ~~rv~G~Dl~~~Ll~~a~~~~~~vfllG---gkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s~pdi 164 (253)
T COG1922 88 PERVAGTDLVEALLKRAAEEGKRVFLLG---GKPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAASGPDI 164 (253)
T ss_pred cccCChHHHHHHHHHHhCccCceEEEec---CCHHHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHhcCCCE
Confidence 222211100 000001133467777764 36778899999999998866666666799998544 7778899999
Q ss_pred EEEecCCCCCC
Q psy17482 304 VVVTNTIPQDG 314 (353)
Q Consensus 304 ii~TnTi~~~~ 314 (353)
++|-..+|..|
T Consensus 165 l~VgmG~P~QE 175 (253)
T COG1922 165 LLVGMGVPRQE 175 (253)
T ss_pred EEEeCCCchhH
Confidence 99999999764
No 163
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=37.63 E-value=4.3e+02 Score=29.25 Aligned_cols=154 Identities=16% Similarity=0.118 Sum_probs=75.4
Q ss_pred HHHHHHHHHcCCCEEEEEcCChhHHhcccC-ccccccccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHc---
Q psy17482 145 KLVANMLSVAGADHIITMDLHASQIQGFFD-IPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRL--- 220 (353)
Q Consensus 145 k~vA~lL~~~g~d~VitvDlHs~~~~~~F~-ip~~~l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~L--- 220 (353)
+.+++.+...+++.|+.+.-+...+...++ .+.........+.+++.+... +.++|+---.++..+ ..+.+.+
T Consensus 380 ~~l~~~l~~~~i~~vi~~G~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~~~--~gDvVLlKGSr~~~l-e~i~~~~~~~ 456 (822)
T PRK11930 380 RKVAQLISKRGIDRLIGIGEEISSEASKFEGTEKEFFKTTEAFLKSFAFLKF--RNELILVKGARKFEF-EQITELLEQK 456 (822)
T ss_pred HHHHHHHHHcCCCEEEEECHHHHHHHHhcCccccEEECCHHHHHHHHHHhcC--CCCEEEEEcCCCCCH-HHHHHHHHHh
Confidence 566777777789999999877655433332 122223335566677766542 234555555566554 3444433
Q ss_pred -CCcEEEEEEeecCCCceEEEEeecCC-CCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhh
Q psy17482 221 -NVEFALIHKERKKANEVASMVLVGDV-KDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINN 298 (353)
Q Consensus 221 -g~~~~~l~K~R~~~~~v~~~~~~gdv-~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~ 298 (353)
+..+..++..+-..| ++. +..-. .+.++.-|==--..|.=+.++++.|.++|++.+.+.. -.+|. .|.+
T Consensus 457 ~~~~~~~Idl~al~~N-~~~--i~~~~~~~~k~~aVvKa~aYGhG~~~va~~l~~~G~~~f~Va~-----l~Ea~-~lr~ 527 (822)
T PRK11930 457 VHETVLEINLNAIVHN-LNY--YRSKLKPETKIMCMVKAFAYGSGSYEIAKLLQEHRVDYLAVAY-----ADEGV-SLRK 527 (822)
T ss_pred hhhHHhhhhHHHHHHH-HHH--HHhhCCCCCEEEEEEeeccccCCHHHHHHHHHHCCCCEEEEee-----HHHHH-HHHh
Confidence 222222222111100 000 00000 1112221111113566677888888888988655443 23444 4566
Q ss_pred cCCC-EEEEecCC
Q psy17482 299 ACFE-AVVVTNTI 310 (353)
Q Consensus 299 s~id-~ii~TnTi 310 (353)
.+++ .|.+...+
T Consensus 528 ~g~~~~Ilvl~~~ 540 (822)
T PRK11930 528 AGITLPIMVMNPE 540 (822)
T ss_pred cCCCCCEEEEeCC
Confidence 6776 56665443
No 164
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=37.56 E-value=93 Score=32.73 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHhCCCccCCC---------ccccCC--CCceeEEe-----CCccCCceEEEEecCCCCCchHHHHHHHHH
Q psy17482 22 SHFFAKQNAEYKGVQRYIPP---------RLSPED--RGQIGVEI-----GESVRGEDVYIVQSGSGEVNDNLMELLIMI 85 (353)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~---------~~~~f~--dGE~~v~i-----~~~vrg~dv~iiqs~~~~~nd~lmeLll~~ 85 (353)
.-..|..+|+.+|++ +... .+.+-. --+..+++ .+.+.|+.|+||..... --.. +.-++
T Consensus 313 G~~~A~g~a~~~gip-~~~~l~kn~~~grtfi~~~q~~r~~~~r~k~~~~~~~~~gk~vllVDD~it--tG~T--~~~~~ 387 (510)
T PRK07847 313 GTPAAVGYAQESGIP-FGQGLVKNAYVGRTFIQPSQTIRQLGIRLKLNPLREVIRGKRLVVVDDSIV--RGNT--QRALV 387 (510)
T ss_pred hHHHHHHHHHHhCCC-hhhceEeecccccCccCcchhhhhhceeeecCccccccCCCEEEEEecccC--chHH--HHHHH
Confidence 456699999999998 4232 111011 11122333 34579999999964221 1122 33678
Q ss_pred HHHhhhCCCeEEEEee
Q psy17482 86 NACKIASASRVTAVIP 101 (353)
Q Consensus 86 ~a~r~~~a~~i~~viP 101 (353)
..||++||++|.+-|-
T Consensus 388 ~~L~~~ga~~v~~ri~ 403 (510)
T PRK07847 388 RMLREAGAAEVHVRIS 403 (510)
T ss_pred HHHHHcCCCEEEEEEC
Confidence 8999999999998764
No 165
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=36.23 E-value=1.2e+02 Score=26.33 Aligned_cols=67 Identities=18% Similarity=0.264 Sum_probs=42.5
Q ss_pred HHHHHcCCCEEEEEcCChhHHhcccCccccccccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEE
Q psy17482 149 NMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFA 225 (353)
Q Consensus 149 ~lL~~~g~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~ 225 (353)
+-+..+|+|+|+.++-. .+.. |+ .......+++.+.+.. -+.++++-..-|...+..+|.+||.++.
T Consensus 45 ~~~~~~Gad~v~~~~~~--~~~~-~~----~~~~a~al~~~i~~~~---p~~Vl~~~t~~g~~la~rlAa~L~~~~v 111 (168)
T cd01715 45 AALKAYGADKVLVAEDP--ALAH-YL----AEPYAPALVALAKKEK---PSHILAGATSFGKDLAPRVAAKLDVGLI 111 (168)
T ss_pred HHHHhcCCCEEEEecCh--hhcc-cC----hHHHHHHHHHHHHhcC---CCEEEECCCccccchHHHHHHHhCCCce
Confidence 33456899999998732 2222 22 1122455666665421 3456666677788999999999998853
No 166
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=36.15 E-value=2.5e+02 Score=26.36 Aligned_cols=97 Identities=11% Similarity=0.188 Sum_probs=55.3
Q ss_pred HHHHHHhhhCCCeEEEEeeCCCccccccccCCCCCCCCchhHHHHhhhccccccCCCCcchHHHHHHHHHHcCCC--EEE
Q psy17482 83 IMINACKIASASRVTAVIPCFPYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGAD--HII 160 (353)
Q Consensus 83 l~~~a~r~~~a~~i~~viPY~~YsRqDr~~~~~~~~~~~~~~~~~~~~~~~~kf~~~e~isak~vA~lL~~~g~d--~Vi 160 (353)
-.++||+..|++||.++-||.-- ..+..++.|+.-|++ .+.
T Consensus 108 Avv~aL~al~a~ri~vlTPY~~e-------------------------------------vn~~e~ef~~~~Gfeiv~~~ 150 (238)
T COG3473 108 AVVEALNALGAQRISVLTPYIDE-------------------------------------VNQREIEFLEANGFEIVDFK 150 (238)
T ss_pred HHHHHHHhhCcceEEEeccchhh-------------------------------------hhhHHHHHHHhCCeEEEEee
Confidence 35789999999999999999631 234456667777754 222
Q ss_pred EEcCChhHHhcccCcccccc--ccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEE
Q psy17482 161 TMDLHASQIQGFFDIPVDNL--YAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFA 225 (353)
Q Consensus 161 tvDlHs~~~~~~F~ip~~~l--~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~ 225 (353)
.+.+- + |...-.+ .....||+.+.. ++.+-..+-+....++.....+=+.+|.|+.
T Consensus 151 ~Lgi~-----d--n~eigr~~P~~~y~lAk~~~~--~~~DaiFiSCTnlRt~eii~~lE~~~G~PVv 208 (238)
T COG3473 151 GLGIT-----D--NLEIGRQEPWAVYRLAKEVFT--PDADAIFISCTNLRTFEIIEKLERDTGVPVV 208 (238)
T ss_pred ccCCc-----c--cchhcccChHHHHHHHHHhcC--CCCCeEEEEeeccccHHHHHHHHHHhCCcee
Confidence 22221 1 1111111 123445555432 2334445556677777777777777788753
No 167
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=36.01 E-value=1.3e+02 Score=24.26 Aligned_cols=72 Identities=24% Similarity=0.062 Sum_probs=42.0
Q ss_pred ccCHHHHHHHHHHhCCCccCCCccccCCCCceeEEeCCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCeEEE
Q psy17482 20 KASHFFAKQNAEYKGVQRYIPPRLSPEDRGQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTA 98 (353)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~dGE~~v~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~i~~ 98 (353)
+.+..+|+..+..+..- +. ...-..++|....-...++-+|++|+=|.++. +. |++-++..+|+.|++-|.+
T Consensus 9 G~S~~~a~~~~~~l~~~--g~-~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~-t~---~~~~~~~~a~~~g~~vi~i 80 (128)
T cd05014 9 GKSGHIARKIAATLSST--GT-PAFFLHPTEALHGDLGMVTPGDVVIAISNSGE-TD---ELLNLLPHLKRRGAPIIAI 80 (128)
T ss_pred cHhHHHHHHHHHHhhcC--CC-ceEEcccchhhccccCcCCCCCEEEEEeCCCC-CH---HHHHHHHHHHHCCCeEEEE
Confidence 35566777777776432 21 22223556544443455666789888886552 34 4555566788888774433
No 168
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=35.68 E-value=2.3e+02 Score=25.87 Aligned_cols=122 Identities=13% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCEEEEEcCChhHHhcccCccccccccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCCcEE
Q psy17482 146 LVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFA 225 (353)
Q Consensus 146 ~vA~lL~~~g~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~~~~ 225 (353)
.+|+.++..|++.++.+|+.......-.+ ..+.+.+.+.. +.++.++-.......+..+.+. |+...
T Consensus 34 ~~a~~~~~~g~~~i~i~dl~~~~~~~~~n---------~~~~~~i~~~~---~~pv~~~ggi~~~~d~~~~~~~-G~~~v 100 (232)
T TIGR03572 34 NAARIYNAKGADELIVLDIDASKRGREPL---------FELISNLAEEC---FMPLTVGGGIRSLEDAKKLLSL-GADKV 100 (232)
T ss_pred HHHHHHHHcCCCEEEEEeCCCcccCCCCC---------HHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHc-CCCEE
Q ss_pred EEEEeecCCCceEEEEeecCCCCCEEEEEecccC-----------------ChHHHHHHHHHHHhcCCCEEEE
Q psy17482 226 LIHKERKKANEVASMVLVGDVKDRVAILVDDMAD-----------------TCGTICHAAEKLMEAGATKVYA 281 (353)
Q Consensus 226 ~l~K~R~~~~~v~~~~~~gdv~Gk~VlIVDDII~-----------------TG~Tl~~aa~~Lk~~GA~~V~~ 281 (353)
++...-....+. ...+.....++.+++==|+.. |+....+.++.+.+.|+..|.+
T Consensus 101 ilg~~~l~~~~~-~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i 172 (232)
T TIGR03572 101 SINTAALENPDL-IEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILL 172 (232)
T ss_pred EEChhHhcCHHH-HHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEE
No 169
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=35.43 E-value=2.2e+02 Score=25.20 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=38.1
Q ss_pred cCCCCCEEEEEecccCChHHHHH-HHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcCCCEEEEecCCC
Q psy17482 244 GDVKDRVAILVDDMADTCGTICH-AAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTNTIP 311 (353)
Q Consensus 244 gdv~Gk~VlIVDDII~TG~Tl~~-aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~id~ii~TnTi~ 311 (353)
++++||+|+|| -.|.+... +++.|++.|+ +|+++.- -.++..+.+. ..|-||++=.-|
T Consensus 40 ~~l~gk~vlVi----G~G~~~G~~~a~~L~~~g~-~V~v~~r---~~~~l~~~l~--~aDiVIsat~~~ 98 (168)
T cd01080 40 IDLAGKKVVVV----GRSNIVGKPLAALLLNRNA-TVTVCHS---KTKNLKEHTK--QADIVIVAVGKP 98 (168)
T ss_pred CCCCCCEEEEE----CCcHHHHHHHHHHHhhCCC-EEEEEEC---CchhHHHHHh--hCCEEEEcCCCC
Confidence 57899999987 36776565 8999999998 4655542 2234445554 467777644443
No 170
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=34.40 E-value=1.6e+02 Score=26.63 Aligned_cols=68 Identities=19% Similarity=0.085 Sum_probs=39.8
Q ss_pred HHHHHHHcCCCEEEEEcCChhHHhcccCccccccccHHHHHHHHHhhCCCCCCeEEEecCC---CchhhHHHHHHHcCCc
Q psy17482 147 VANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDA---GGAKRVTSIADRLNVE 223 (353)
Q Consensus 147 vA~lL~~~g~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~i~~~~~~~~~~vvVspd~---Gg~~ra~~la~~Lg~~ 223 (353)
.++.+...|+|+|+.+|-.. + ..|+ .......+++.+.+.. -+.++++-.. +|-..+..+|.+||.+
T Consensus 68 ~~~~l~~~G~d~V~~~~~~~--~-~~~~----~e~~a~al~~~i~~~~---p~lVL~~~t~~~~~grdlaprlAarLga~ 137 (202)
T cd01714 68 ALREALAMGADRAILVSDRA--F-AGAD----TLATAKALAAAIKKIG---VDLILTGKQSIDGDTGQVGPLLAELLGWP 137 (202)
T ss_pred HHHHHHHcCCCEEEEEeccc--c-cCCC----hHHHHHHHHHHHHHhC---CCEEEEcCCcccCCcCcHHHHHHHHhCCC
Confidence 33344568999999987532 1 1121 0112445666655421 2344444333 3889999999999988
Q ss_pred E
Q psy17482 224 F 224 (353)
Q Consensus 224 ~ 224 (353)
+
T Consensus 138 l 138 (202)
T cd01714 138 Q 138 (202)
T ss_pred c
Confidence 5
No 171
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=34.19 E-value=2.3e+02 Score=26.17 Aligned_cols=82 Identities=20% Similarity=0.288 Sum_probs=47.1
Q ss_pred chHHHHHHHHHHHHhhhCCCeEEEEeeCCCccccccccCCCCCCCCchhHHHHhhhccccccCCC-CcchH-------HH
Q psy17482 75 NDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSR-APISA-------KL 146 (353)
Q Consensus 75 nd~lmeLll~~~a~r~~~a~~i~~viPY~~YsRqDr~~~~~~~~~~~~~~~~~~~~~~~~kf~~~-e~isa-------k~ 146 (353)
.|.++---+...++++.+. .+|+|=+||.=..-... | +| -.++. +.
T Consensus 37 tD~~ia~~~a~~~a~~~~~---~lv~P~i~yG~s~~h~~----------------------f-pGTisl~~~t~~~~l~d 90 (237)
T PF02633_consen 37 TDTLIAEAVAERAAERLGE---ALVLPPIPYGCSPHHMG----------------------F-PGTISLSPETLIALLRD 90 (237)
T ss_dssp HHHHHHHHHHHHHHHHHTH---EEE---B--BB-GCCTT----------------------S-TT-BBB-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCc---EEEeCCCccccCcccCC----------------------C-CCeEEeCHHHHHHHHHH
Confidence 3888888888999998877 89999999875333222 1 22 22333 33
Q ss_pred HHHHHHHcCCCEEEEEcCChhHHhcccCccccccccHHHHHHHHHhh
Q psy17482 147 VANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKEN 193 (353)
Q Consensus 147 vA~lL~~~g~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~i~~~ 193 (353)
+++-|...|+.+++.++-|.... .+....++.+..+
T Consensus 91 i~~sl~~~Gf~~ivivngHgGN~-----------~~l~~~~~~l~~~ 126 (237)
T PF02633_consen 91 ILRSLARHGFRRIVIVNGHGGNI-----------AALEAAARELRQE 126 (237)
T ss_dssp HHHHHHHHT--EEEEEESSTTHH-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEEECCHhHH-----------HHHHHHHHHHHhh
Confidence 34445568999999999997533 1345566666655
No 172
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=34.12 E-value=76 Score=30.34 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=30.9
Q ss_pred CCCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEE
Q psy17482 245 DVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAIL 283 (353)
Q Consensus 245 dv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~ 283 (353)
+++||+|+|+ -+|++-..++..|.+.|+++|+++.
T Consensus 122 ~~~~k~vlvl----GaGGaarai~~aL~~~G~~~i~I~n 156 (282)
T TIGR01809 122 PLAGFRGLVI----GAGGTSRAAVYALASLGVTDITVIN 156 (282)
T ss_pred ccCCceEEEE----cCcHHHHHHHHHHHHcCCCeEEEEe
Confidence 4678999866 6899999999999999999998875
No 173
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=33.96 E-value=78 Score=24.69 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=26.3
Q ss_pred CCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEE
Q psy17482 247 KDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAI 282 (353)
Q Consensus 247 ~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~ 282 (353)
+++.++++. .+|..-..++..|++.|-+.|+.+
T Consensus 60 ~~~~ivvyC---~~G~rs~~a~~~L~~~G~~~v~~l 92 (101)
T cd01518 60 KGKKVLMYC---TGGIRCEKASAYLKERGFKNVYQL 92 (101)
T ss_pred CCCEEEEEC---CCchhHHHHHHHHHHhCCcceeee
Confidence 567888886 478888888999999998877654
No 174
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=33.87 E-value=68 Score=24.94 Aligned_cols=31 Identities=26% Similarity=0.253 Sum_probs=24.4
Q ss_pred CCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEE
Q psy17482 247 KDRVAILVDDMADTCGTICHAAEKLMEAGATKVYA 281 (353)
Q Consensus 247 ~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~ 281 (353)
+++.++++ |.+|..-..+++.|++.|-. ++.
T Consensus 60 ~~~~ivv~---C~~G~rs~~aa~~L~~~G~~-~~~ 90 (100)
T cd01523 60 DDQEVTVI---CAKEGSSQFVAELLAERGYD-VDY 90 (100)
T ss_pred CCCeEEEE---cCCCCcHHHHHHHHHHcCce-eEE
Confidence 45667775 77898889999999999987 543
No 175
>PF06300 Tsp45I: Tsp45I type II restriction enzyme; InterPro: IPR010443 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents type II restriction endonucleases such as Tsp45I, which recognises the DNA sequence 5' GTSAC, cleaving prior to G-1 [].
Probab=33.46 E-value=5.8 Score=37.17 Aligned_cols=54 Identities=20% Similarity=0.328 Sum_probs=40.4
Q ss_pred chHHHHHHHHHHHHhhhCCCeEEEEeeCCCccccccccCCCCCCCCchhHHHHhhhccccccCCCCcchHHHHHHHHHHc
Q psy17482 75 NDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVA 154 (353)
Q Consensus 75 nd~lmeLll~~~a~r~~~a~~i~~viPY~~YsRqDr~~~~~~~~~~~~~~~~~~~~~~~~kf~~~e~isak~vA~lL~~~ 154 (353)
|-++++.||-. .....+ =||+||-|.|+... .+.|-|.+-++..|..+
T Consensus 53 ~~~li~~lL~~---~lfPik-----dsYvayLkrdksAl------------------------ernP~Ti~ri~g~l~em 100 (261)
T PF06300_consen 53 STKLIKSLLNL---DLFPIK-----DSYVAYLKRDKSAL------------------------ERNPETINRICGRLYEM 100 (261)
T ss_pred hHHHHHHHHhc---ccCccC-----cchHHHHHhhHHHH------------------------hcCcHHHHHHHHHHHHH
Confidence 45577666652 222233 38999999999876 68899999999999999
Q ss_pred CCCEEE
Q psy17482 155 GADHII 160 (353)
Q Consensus 155 g~d~Vi 160 (353)
|.+.|+
T Consensus 101 Gl~~i~ 106 (261)
T PF06300_consen 101 GLDKIY 106 (261)
T ss_pred hHHHHH
Confidence 977654
No 176
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=33.01 E-value=3.3e+02 Score=27.47 Aligned_cols=135 Identities=13% Similarity=0.140 Sum_probs=71.5
Q ss_pred chHHHHHHHHHHcCCCEEEEE--cCChhHHhcc----cCccccccccHHHHHHHHHhhCCCCCCeEEEecCC---Cchhh
Q psy17482 142 ISAKLVANMLSVAGADHIITM--DLHASQIQGF----FDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDA---GGAKR 212 (353)
Q Consensus 142 isak~vA~lL~~~g~d~Vitv--DlHs~~~~~~----F~ip~~~l~a~~~La~~i~~~~~~~~~~vvVspd~---Gg~~r 212 (353)
-..+.+.++|+.+|++-+..+ +..-.+++.. .|+... -.....+++++.+++ .-|.+..... +-..|
T Consensus 179 ~d~~ei~~lL~~~Gl~v~~~~~~~~~~~~i~~~~~A~lniv~~-~~~~~~~a~~L~~~~---GiP~~~~~p~G~~~t~~~ 254 (430)
T cd01981 179 HDCRELKRLLHTLGIEVNVVIPEGASVDDLNELPKAWFNIVPY-REYGLSAALYLEEEF---GMPSVKITPIGVVATARF 254 (430)
T ss_pred chHHHHHHHHHHcCCeEEEEEcCCCCHHHHHhhhhCeEEEEec-HHHHHHHHHHHHHHh---CCCeEeccCCChHHHHHH
Confidence 356889999999998765544 3343444322 222110 012355788887764 2343333222 24556
Q ss_pred HHHHHHHcCCcE-------EEEEEeecCC-CceEEE---EeecCCCCCEEEEEecccCChHHHHHHHHHHH-hcCCCEEE
Q psy17482 213 VTSIADRLNVEF-------ALIHKERKKA-NEVASM---VLVGDVKDRVAILVDDMADTCGTICHAAEKLM-EAGATKVY 280 (353)
Q Consensus 213 a~~la~~Lg~~~-------~~l~K~R~~~-~~v~~~---~~~gdv~Gk~VlIVDDII~TG~Tl~~aa~~Lk-~~GA~~V~ 280 (353)
-+.+++.+|.+. .-+...|... ...... .....+.||+++|+-| +......++.|. +.|..-+.
T Consensus 255 l~~i~~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~l~gkrv~i~g~----~~~~~~l~~~L~~elG~~vv~ 330 (430)
T cd01981 255 LREIQELLGIQIIPELVNVEPYIDSQTRWVSQSARSSRSIDSQNLTGKRAFVFGD----ATHVAAATRILAREMGFRVVG 330 (430)
T ss_pred HHHHHHHhCCccccccCChhHHHHhccchhhhhhhhhhhhhhccccCCeEEEEcC----hHHHHHHHHHHHHHcCCEEEe
Confidence 677788888662 0000111000 000000 0012467999999775 235566667675 89998777
Q ss_pred EEEE
Q psy17482 281 AILT 284 (353)
Q Consensus 281 ~~~t 284 (353)
+.+.
T Consensus 331 ~~~~ 334 (430)
T cd01981 331 AGTY 334 (430)
T ss_pred ccCC
Confidence 6553
No 177
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=32.21 E-value=55 Score=32.05 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=35.1
Q ss_pred ChHHHHHHHHHHHhcCCC-EEEEEEEeccCCh-hHHHHHhhcCCCEEEEecCC
Q psy17482 260 TCGTICHAAEKLMEAGAT-KVYAILTHGIFSG-PAINRINNACFEAVVVTNTI 310 (353)
Q Consensus 260 TG~Tl~~aa~~Lk~~GA~-~V~~~~tHglfs~-~a~~~l~~s~id~ii~TnTi 310 (353)
-..|+.+.....++.|.+ +|++.=++|-+.+ -..+.|.++|++-.+++|+-
T Consensus 128 ~S~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Dsa 180 (301)
T COG1184 128 FSKTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIVDSA 180 (301)
T ss_pred CcHHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHHHHcCCceEEEechH
Confidence 567778888877777765 3444445666554 34566778889988888885
No 178
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=31.86 E-value=1.5e+02 Score=31.35 Aligned_cols=60 Identities=17% Similarity=0.202 Sum_probs=44.7
Q ss_pred CCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChh----HHHHHhhcCCCEEEEecCCCC
Q psy17482 247 KDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGP----AINRINNACFEAVVVTNTIPQ 312 (353)
Q Consensus 247 ~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~----a~~~l~~s~id~ii~TnTi~~ 312 (353)
+++.+||+ +.|=.+....++.|.+.|. .+.+.||-++.. .++.+.+..++-+|+||.+..
T Consensus 256 ~~~k~LVF---~nt~~~ae~l~~~L~~~g~---~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~ar 319 (572)
T PRK04537 256 EGARTMVF---VNTKAFVERVARTLERHGY---RVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAAR 319 (572)
T ss_pred cCCcEEEE---eCCHHHHHHHHHHHHHcCC---CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhc
Confidence 46677776 5777888889999998875 466788887764 455566667888999998764
No 179
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=31.85 E-value=1.1e+02 Score=25.18 Aligned_cols=49 Identities=16% Similarity=0.138 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcCCCEEEEecCC
Q psy17482 261 CGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTNTI 310 (353)
Q Consensus 261 G~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~id~ii~TnTi 310 (353)
-..+.+.++.|++.|...+.+++ -|--.+.-.+++.+.|+|.++-+.|-
T Consensus 64 ~~~~~~~~~~L~~~~~~~i~i~~-GG~~~~~~~~~~~~~G~d~~~~~~~~ 112 (122)
T cd02071 64 MTLFPEVIELLRELGAGDILVVG-GGIIPPEDYELLKEMGVAEIFGPGTS 112 (122)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEE-ECCCCHHHHHHHHHCCCCEEECCCCC
Confidence 34567888999999887766655 23333445777888999999976664
No 180
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=31.77 E-value=49 Score=26.04 Aligned_cols=48 Identities=27% Similarity=0.201 Sum_probs=27.3
Q ss_pred ccCChHHHHHHHHHHHhcCCCEEEEEEEeccC-Chh----HHHHHhhcCCCEEEEec
Q psy17482 257 MADTCGTICHAAEKLMEAGATKVYAILTHGIF-SGP----AINRINNACFEAVVVTN 308 (353)
Q Consensus 257 II~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglf-s~~----a~~~l~~s~id~ii~Tn 308 (353)
++.|++| ++.|+++|-....+.-..+-- ..+ ..+.|.+..++-||.|=
T Consensus 16 i~AT~gT----a~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~ 68 (95)
T PF02142_consen 16 IYATEGT----AKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTP 68 (95)
T ss_dssp EEEEHHH----HHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE-
T ss_pred EEEChHH----HHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeC
Confidence 5678887 467888887743332211111 123 78888888888666543
No 181
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=30.92 E-value=2.6e+02 Score=21.92 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=33.4
Q ss_pred CCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCCh--hHHHHHhhcC-CCEEEEecCCC
Q psy17482 246 VKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSG--PAINRINNAC-FEAVVVTNTIP 311 (353)
Q Consensus 246 v~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~--~a~~~l~~s~-id~ii~TnTi~ 311 (353)
..+.+|++||| .-.......+.|...| ..|..+ -++ .+.+.+.+.. +|-+++=-..|
T Consensus 3 ~~~~~vLivdD---~~~~~~~~~~~l~~~g-~~v~~a-----~~g~~~al~~~~~~~~~dlii~D~~mp 62 (130)
T COG0784 3 LSGLRVLVVDD---EPVNRRLLKRLLEDLG-YEVVEA-----ADGEEEALELLRELPQPDLILLDINMP 62 (130)
T ss_pred CCCcEEEEEcC---CHHHHHHHHHHHHHcC-CeEEEe-----CChHHHHHHHHHhCCCCCEEEEeCCCC
Confidence 35779999999 3344455556677777 222222 233 6888887653 66654433334
No 182
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=30.64 E-value=94 Score=24.21 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=26.9
Q ss_pred CCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEE
Q psy17482 247 KDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAI 282 (353)
Q Consensus 247 ~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~ 282 (353)
+++.++++++ +|.....++..|++.|-..|+.+
T Consensus 57 ~~~~vv~~c~---~g~rs~~~~~~l~~~G~~~v~~l 89 (101)
T cd01528 57 PDKDIVVLCH---HGGRSMQVAQWLLRQGFENVYNL 89 (101)
T ss_pred CCCeEEEEeC---CCchHHHHHHHHHHcCCccEEEe
Confidence 4678899864 68888889999999999888754
No 183
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=30.25 E-value=1.5e+02 Score=27.61 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=31.2
Q ss_pred EEEeecCCCCCEEEEEecccCChHHHHHH-HHHHHhcCCCEEEEEEEeccCChh
Q psy17482 239 SMVLVGDVKDRVAILVDDMADTCGTICHA-AEKLMEAGATKVYAILTHGIFSGP 291 (353)
Q Consensus 239 ~~~~~gdv~Gk~VlIVDDII~TG~Tl~~a-a~~Lk~~GA~~V~~~~tHglfs~~ 291 (353)
.+.+.-+++|++|+|| .||.+..- ++.|.+.||+ |.+++ +-++++
T Consensus 16 ~~pi~l~~~~~~VLVV-----GGG~VA~RK~~~Ll~~gA~-VtVVa--p~i~~e 61 (223)
T PRK05562 16 YMFISLLSNKIKVLII-----GGGKAAFIKGKTFLKKGCY-VYILS--KKFSKE 61 (223)
T ss_pred EeeeEEECCCCEEEEE-----CCCHHHHHHHHHHHhCCCE-EEEEc--CCCCHH
Confidence 4455667889999998 66766544 6778888876 66666 445554
No 184
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=29.61 E-value=1.8e+02 Score=31.21 Aligned_cols=57 Identities=9% Similarity=0.064 Sum_probs=39.4
Q ss_pred CCCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccC----ChhHHHHHhhcCCCEEE
Q psy17482 245 DVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIF----SGPAINRINNACFEAVV 305 (353)
Q Consensus 245 dv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglf----s~~a~~~l~~s~id~ii 305 (353)
+..||+|+||- .|.|-..++..+.+.|+++|.++.-+.-. +..-++.+.+.+++-++
T Consensus 465 ~~~gk~VvVIG----gG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e~~~~~~~Gv~~~~ 525 (654)
T PRK12769 465 NTAGLNVVVLG----GGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEVKNAREEGANFEF 525 (654)
T ss_pred cCCCCeEEEEC----CcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHHHHHHHHcCCeEEe
Confidence 35799999985 78888899998889999998877643221 22234455566766443
No 185
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=29.49 E-value=93 Score=24.23 Aligned_cols=33 Identities=24% Similarity=0.056 Sum_probs=27.0
Q ss_pred CCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEE
Q psy17482 247 KDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAI 282 (353)
Q Consensus 247 ~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~ 282 (353)
+++.+++++ .+|.+...++..|+..|-+.|+.+
T Consensus 65 ~~~~ivv~c---~~g~~s~~~~~~l~~~G~~~v~~~ 97 (106)
T cd01519 65 KDKELIFYC---KAGVRSKAAAELARSLGYENVGNY 97 (106)
T ss_pred CCCeEEEEC---CCcHHHHHHHHHHHHcCCccceec
Confidence 477888885 478888889999999999887665
No 186
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=29.43 E-value=81 Score=24.30 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=24.6
Q ss_pred CCCEEEEEecccCChHH--HHHHHHHHHhcCCCEEEEE
Q psy17482 247 KDRVAILVDDMADTCGT--ICHAAEKLMEAGATKVYAI 282 (353)
Q Consensus 247 ~Gk~VlIVDDII~TG~T--l~~aa~~Lk~~GA~~V~~~ 282 (353)
+++.++++. .+|.+ ...+++.|++.|-++|+.+
T Consensus 49 ~~~~ivl~c---~~G~~~~s~~aa~~L~~~G~~~v~~l 83 (92)
T cd01532 49 RDTPIVVYG---EGGGEDLAPRAARRLSELGYTDVALL 83 (92)
T ss_pred CCCeEEEEe---CCCCchHHHHHHHHHHHcCccCEEEc
Confidence 356788885 46643 5788999999999988743
No 187
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=28.67 E-value=4.4e+02 Score=23.80 Aligned_cols=124 Identities=17% Similarity=0.174 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHcCCCEEEEEcCChhHHhcccCccccccccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHH--c
Q psy17482 143 SAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADR--L 220 (353)
Q Consensus 143 sak~vA~lL~~~g~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~--L 220 (353)
..-.+|+.++..|++.+..+|+.. .+.....+ ..+.+.+.+.. ..++.++ ||+....++.+. .
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld~-----~~~g~~~~----~~~i~~i~~~~---~~pv~~~---GGI~~~ed~~~~~~~ 95 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLDG-----AKAGKPVN----LELIEAIVKAV---DIPVQVG---GGIRSLETVEALLDA 95 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCc-----cccCCccc----HHHHHHHHHHC---CCCEEEc---CCcCCHHHHHHHHHc
Confidence 456788889999999999999822 11111112 22344444432 3456663 455444444332 3
Q ss_pred CCcEEEEEEeecC-CC-------ce-EEEEeecCCCCCEEEEEecc-cCChHHHHHHHHHHHhcCCCEEEEE
Q psy17482 221 NVEFALIHKERKK-AN-------EV-ASMVLVGDVKDRVAILVDDM-ADTCGTICHAAEKLMEAGATKVYAI 282 (353)
Q Consensus 221 g~~~~~l~K~R~~-~~-------~v-~~~~~~gdv~Gk~VlIVDDI-I~TG~Tl~~aa~~Lk~~GA~~V~~~ 282 (353)
|....++...-.. .. .. +...+.-|+++..+. +... -.+..+..+.++.+.+.|+..|.+.
T Consensus 96 Ga~~vilg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~-~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~ 166 (233)
T PRK00748 96 GVSRVIIGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVA-TDGWLETSGVTAEDLAKRFEDAGVKAIIYT 166 (233)
T ss_pred CCCEEEECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEE-EccCeecCCCCHHHHHHHHHhcCCCEEEEe
Confidence 5554443221110 00 00 011222345544432 2222 1234566788888888888876554
No 188
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=28.66 E-value=2.6e+02 Score=26.41 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=33.8
Q ss_pred CCCceeEEeC--CccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCeEEEEe
Q psy17482 47 DRGQIGVEIG--ESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVI 100 (353)
Q Consensus 47 ~dGE~~v~i~--~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~i~~vi 100 (353)
+.||+.+.-. .++.|++|+||-... |.=--+..+++.|+..|+++|.++.
T Consensus 134 s~g~v~i~~~~~~~l~gk~VLIVDDIi----dTG~Tl~~~~~~L~~~g~~~V~va~ 185 (241)
T PTZ00149 134 STGKLEIVSDDLSCLKDKHVLIVEDII----DTGNTLVKFCEYLKKFEPKTIRIAT 185 (241)
T ss_pred cCCceEEecccccccCCCEEEEEEeEe----ChHHHHHHHHHHHHhcCCCEEEEEE
Confidence 5677776532 468999999997532 2222344555778889999986655
No 189
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=28.61 E-value=1.1e+02 Score=26.28 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=30.1
Q ss_pred cCCCCCEEEEEecccCCh--------HHHHHHHHHHHhcCCCEEEEEE
Q psy17482 244 GDVKDRVAILVDDMADTC--------GTICHAAEKLMEAGATKVYAIL 283 (353)
Q Consensus 244 gdv~Gk~VlIVDDII~TG--------~Tl~~aa~~Lk~~GA~~V~~~~ 283 (353)
.|++||-||+.....+.. +++..=.+.+.++||.-|.++.
T Consensus 46 iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~ 93 (137)
T cd04820 46 LDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLT 93 (137)
T ss_pred CCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEe
Confidence 489999998887765421 2466677888899999887776
No 190
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=28.09 E-value=4.2e+02 Score=24.32 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHcCCCEEEEEcCChh
Q psy17482 143 SAKLVANMLSVAGADHIITMDLHAS 167 (353)
Q Consensus 143 sak~vA~lL~~~g~d~VitvDlHs~ 167 (353)
....+|+.++..|++.++..|+...
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~ 52 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITAS 52 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcc
Confidence 5677899999999999999999864
No 191
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=28.08 E-value=1.2e+02 Score=26.31 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=29.7
Q ss_pred cCCCCCEEEEEecccC-------ChH-------HHHHHHHHHHhcCCCEEEEEEE
Q psy17482 244 GDVKDRVAILVDDMAD-------TCG-------TICHAAEKLMEAGATKVYAILT 284 (353)
Q Consensus 244 gdv~Gk~VlIVDDII~-------TG~-------Tl~~aa~~Lk~~GA~~V~~~~t 284 (353)
.|++||-|++..+-.+ +|+ ++..=.+.++++||.-|.++..
T Consensus 44 ~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~ 98 (142)
T cd04814 44 LDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHE 98 (142)
T ss_pred CCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeC
Confidence 3899999988866542 111 5666778888999998877764
No 192
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=28.00 E-value=1.1e+02 Score=30.64 Aligned_cols=50 Identities=14% Similarity=0.335 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhcCCCEEEEEEEec-cCChhHHHHHhhcCCCEEEE-ecCCCC
Q psy17482 263 TICHAAEKLMEAGATKVYAILTHG-IFSGPAINRINNACFEAVVV-TNTIPQ 312 (353)
Q Consensus 263 Tl~~aa~~Lk~~GA~~V~~~~tHg-lfs~~a~~~l~~s~id~ii~-TnTi~~ 312 (353)
-+....+.|++...-.+..+=||| ++++...+.|+++|+|++=. -|+...
T Consensus 176 ~l~~lVqalk~~~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDp 227 (414)
T COG2100 176 HLVDLVQALKEHKGVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDP 227 (414)
T ss_pred hHHHHHHHHhcCCCceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCCH
Confidence 467788889988777888888897 78889999999999999864 566644
No 193
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=27.78 E-value=1e+02 Score=31.50 Aligned_cols=49 Identities=33% Similarity=0.399 Sum_probs=32.1
Q ss_pred cCCc-eEEEEecCCCC---CchHHHHHHHHHHHHhhhCCCeEEEEeeCCCcccc
Q psy17482 59 VRGE-DVYIVQSGSGE---VNDNLMELLIMINACKIASASRVTAVIPCFPYARQ 108 (353)
Q Consensus 59 vrg~-dv~iiqs~~~~---~nd~lmeLll~~~a~r~~~a~~i~~viPY~~YsRq 108 (353)
+-+. ||+|+.|++.. +|..-.|-. +++.++++-.+--++++|.|+..|-
T Consensus 177 ~~~~~DvLI~EsTYg~~~~~~r~~~e~~-f~~~v~~~l~~GG~vlipafa~gra 229 (427)
T COG1236 177 LPPCIDVLIVESTYGDRLHPNRDEVERR-FIESVKAALERGGTVLIPAFALGRA 229 (427)
T ss_pred cCCCCcEEEEecccCCccCCCHHHHHHH-HHHHHHHHHhCCCEEEEecccccHH
Confidence 3444 99999998752 333333333 6666666544446899999999873
No 194
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=27.77 E-value=4.6e+02 Score=23.68 Aligned_cols=126 Identities=18% Similarity=0.162 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHcCCCEEEEEcCChhHHhcccCccccccccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCC
Q psy17482 143 SAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNV 222 (353)
Q Consensus 143 sak~vA~lL~~~g~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~ 222 (353)
....+|+.++..|+|.+..+|+... |.....| ..+++.+.+.. +-++.++-.......+..+.+ .|.
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~-----~~~~~~~----~~~i~~i~~~~---~~pv~~~GgI~~~e~~~~~~~-~Ga 96 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGA-----KGGEPVN----LELIEEIVKAV---GIPVQVGGGIRSLEDIERLLD-LGV 96 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCcc-----ccCCCCC----HHHHHHHHHhc---CCCEEEeCCcCCHHHHHHHHH-cCC
Confidence 3456888898899999999998652 1101111 22444444432 245666544444444444432 455
Q ss_pred cEEEEEEeecCC-C-------ce--EEEEeecCCCCCEEEEEecc-cCChHHHHHHHHHHHhcCCCEEEEE
Q psy17482 223 EFALIHKERKKA-N-------EV--ASMVLVGDVKDRVAILVDDM-ADTCGTICHAAEKLMEAGATKVYAI 282 (353)
Q Consensus 223 ~~~~l~K~R~~~-~-------~v--~~~~~~gdv~Gk~VlIVDDI-I~TG~Tl~~aa~~Lk~~GA~~V~~~ 282 (353)
+..++-..-... . .. +...+.-|+++..++ .+.. -.+..+..+.++.+.+.|+..+.+.
T Consensus 97 d~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ga~~iii~ 166 (234)
T cd04732 97 SRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVA-TKGWLETSEVSLEELAKRFEELGVKAIIYT 166 (234)
T ss_pred CEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEE-ECCCeeecCCCHHHHHHHHHHcCCCEEEEE
Confidence 543322110000 0 00 011111233322222 2211 1245566777888888888876543
No 195
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=27.72 E-value=5.1e+02 Score=24.25 Aligned_cols=73 Identities=18% Similarity=0.189 Sum_probs=50.0
Q ss_pred cchHHHHHHHHHHcCCCEEEEEcCChhHHhcccCccccccccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHc
Q psy17482 141 PISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRL 220 (353)
Q Consensus 141 ~isak~vA~lL~~~g~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~L 220 (353)
.+....+++.++..|++.++..|++.......++ ..+.+.+.+.. +-+++.+-..+...-...+.+..
T Consensus 151 ~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~d---------~~~i~~~~~~~---~ipvIasGGv~s~eD~~~l~~~~ 218 (258)
T PRK01033 151 KKDPLELAKEYEALGAGEILLNSIDRDGTMKGYD---------LELLKSFRNAL---KIPLIALGGAGSLDDIVEAILNL 218 (258)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEccCCCCCcCCCC---------HHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHHHHC
Confidence 4567888999999999999999998876544344 22334454432 45788887777766666666566
Q ss_pred CCcEE
Q psy17482 221 NVEFA 225 (353)
Q Consensus 221 g~~~~ 225 (353)
|+.-+
T Consensus 219 GvdgV 223 (258)
T PRK01033 219 GADAA 223 (258)
T ss_pred CCCEE
Confidence 76643
No 196
>KOG1377|consensus
Probab=27.70 E-value=1.2e+02 Score=29.00 Aligned_cols=152 Identities=18% Similarity=0.159 Sum_probs=71.5
Q ss_pred HHHHHcCCCEEEEEcCChhHHhcc--cCcccccccc-HHHHHHHHHhhCCCCCCeE--EEecCCCc-hhhHHHHHHHcCC
Q psy17482 149 NMLSVAGADHIITMDLHASQIQGF--FDIPVDNLYA-EPAVLKWIKENIPEWKNSI--IVSPDAGG-AKRVTSIADRLNV 222 (353)
Q Consensus 149 ~lL~~~g~d~VitvDlHs~~~~~~--F~ip~~~l~a-~~~La~~i~~~~~~~~~~v--vVspd~Gg-~~ra~~la~~Lg~ 222 (353)
.+....| .++.-.-.|++-+.+| |+.+ ..|.+ +...+..|-+. ...-++ +++|.-.| ...+...++..++
T Consensus 46 ~~~~~~G-pf~l~sk~h~di~~df~~~~~~-k~L~aLA~a~~f~I~ed--rkffDigntvg~qY~gg~~kia~wadl~n~ 121 (261)
T KOG1377|consen 46 QLALRFG-PFILKSKTHSDIFFDFSLFNSG-KDLRALAQAYAFLIFED--RKFFDIGNTVGLQYKGGPLKIASWADLVNA 121 (261)
T ss_pred HHHHhhC-CeEeeccccCceeecccccccH-HHHHHHHHHHHHHHHhh--hhcccccceeccccccchHHHHHHHHHHhc
Confidence 3333344 5777778888876443 2211 11111 11222223222 112235 66766544 7778777777665
Q ss_pred cEEEE--------EEeecCCCceEEEEeecCCCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHH
Q psy17482 223 EFALI--------HKERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAIN 294 (353)
Q Consensus 223 ~~~~l--------~K~R~~~~~v~~~~~~gdv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~ 294 (353)
+.... +|.-...+ .....+..+..+|.+++.||+.++|.-+.+. - -.-+...++--+++-+-.+
T Consensus 122 h~v~g~~i~~g~~rk~~k~~~-egG~lllAems~kg~L~~~dy~ea~~aI~ee---~----~d~~~G~v~g~~~~ldrq~ 193 (261)
T KOG1377|consen 122 HGVPGRGIIKGLNRKLLKDHG-EGGVLLLAELSSKGSLITGDYTEAATAIAEE---D----IDFVNGFVAGSIVALDRQE 193 (261)
T ss_pred cCcccchHHHHHhhhccccCC-CCceEEEEEeccCCceeehhHHHHHHHHHHh---h----hchheeEEeeeeeeccHHh
Confidence 43211 11111122 1122344467889999999966655555554 1 1112222222222222224
Q ss_pred HHhhcCCCEEEEecCCCC
Q psy17482 295 RINNACFEAVVVTNTIPQ 312 (353)
Q Consensus 295 ~l~~s~id~ii~TnTi~~ 312 (353)
++...+++.-.-+|++-.
T Consensus 194 l~~tpgv~~d~~~d~lgq 211 (261)
T KOG1377|consen 194 LIMTPGVELDAAGDNLGQ 211 (261)
T ss_pred hccCCCCccchhhcchhh
Confidence 444455665556666543
No 197
>KOG1643|consensus
Probab=27.66 E-value=63 Score=30.05 Aligned_cols=59 Identities=24% Similarity=0.363 Sum_probs=40.5
Q ss_pred eeCCCccccccccCCCCCCCCchhHHHHhhhccccccCCCCcchHHHHHHHHHHcCCCEEEEEcCChhHHhcccC
Q psy17482 100 IPCFPYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFD 174 (353)
Q Consensus 100 iPY~~YsRqDr~~~~~~~~~~~~~~~~~~~~~~~~kf~~~e~isak~vA~lL~~~g~d~VitvDlHs~~~~~~F~ 174 (353)
.||+.|+||-=+... ..--.|-|++ .+-+++...=+.||..+|+++||. =||.+. ..|.
T Consensus 44 ~~Yl~~ak~~l~~~i------------~v~aQn~~~~-k~GafTGEiS~~mlkd~G~~wVIl--GHSERR-~~fg 102 (247)
T KOG1643|consen 44 APYLDYAKSKLKPDI------------GVAAQNCYKV-KSGAFTGEISAEMLKDLGAEWVIL--GHSERR-HVFG 102 (247)
T ss_pred hhHHHHHHHhCCccc------------eeecceeeec-cCccccCccCHHHHHhCCCCEEEe--cchhhh-hhhC
Confidence 578888887543320 0001256777 667789888899999999999998 788764 3443
No 198
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=27.47 E-value=1.4e+02 Score=26.25 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=38.1
Q ss_pred CCEEEEEecccCCh---HHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcCCCEEEEe
Q psy17482 248 DRVAILVDDMADTC---GTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVT 307 (353)
Q Consensus 248 Gk~VlIVDDII~TG---~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~id~ii~T 307 (353)
.|.+|++=|-.+++ .++.++++.++++|.. |+++.. |-.....+..|...+-..++.+
T Consensus 110 ~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~-i~~vgi-g~~~~~~L~~IA~~~~~~~~~~ 170 (186)
T cd01480 110 NKFLLVITDGHSDGSPDGGIEKAVNEADHLGIK-IFFVAV-GSQNEEPLSRIACDGKSALYRE 170 (186)
T ss_pred ceEEEEEeCCCcCCCcchhHHHHHHHHHHCCCE-EEEEec-CccchHHHHHHHcCCcchhhhc
Confidence 35667777776543 3577889999998876 666653 4455566777776665554444
No 199
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=27.30 E-value=1.2e+02 Score=30.27 Aligned_cols=36 Identities=11% Similarity=0.049 Sum_probs=31.8
Q ss_pred cCCCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEE
Q psy17482 244 GDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAIL 283 (353)
Q Consensus 244 gdv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~ 283 (353)
++++||+++|| -+|.+-..+++.|.++|+.+|+++-
T Consensus 170 ~~l~~k~vLvI----GaGem~~l~a~~L~~~g~~~i~v~n 205 (338)
T PRK00676 170 QKSKKASLLFI----GYSEINRKVAYYLQRQGYSRITFCS 205 (338)
T ss_pred CCccCCEEEEE----cccHHHHHHHHHHHHcCCCEEEEEc
Confidence 67899999986 5899999999999999999888765
No 200
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=27.23 E-value=2.7e+02 Score=28.21 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=44.7
Q ss_pred CCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChh----HHHHHhhcCCCEEEEecCCCC
Q psy17482 247 KDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGP----AINRINNACFEAVVVTNTIPQ 312 (353)
Q Consensus 247 ~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~----a~~~l~~s~id~ii~TnTi~~ 312 (353)
.++.+||+ +.|=.+....++.|++.|- .+...||-++.. +++.+.+..++-+++||....
T Consensus 241 ~~~~~lVF---~~t~~~~~~l~~~L~~~~~---~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~r 304 (460)
T PRK11776 241 QPESCVVF---CNTKKECQEVADALNAQGF---SALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAAR 304 (460)
T ss_pred CCCceEEE---ECCHHHHHHHHHHHHhCCC---cEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEeccccc
Confidence 34566666 6788889999999998874 456679888753 555666667888999998754
No 201
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=27.13 E-value=1.5e+02 Score=27.90 Aligned_cols=73 Identities=18% Similarity=0.135 Sum_probs=42.0
Q ss_pred cCHHHHHHHHHHhCCCccCCCcccc-------------CCCCc-eeEEeC--CccCCceEEEEecCCCCCchHHHHHHHH
Q psy17482 21 ASHFFAKQNAEYKGVQRYIPPRLSP-------------EDRGQ-IGVEIG--ESVRGEDVYIVQSGSGEVNDNLMELLIM 84 (353)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------f~dGE-~~v~i~--~~vrg~dv~iiqs~~~~~nd~lmeLll~ 84 (353)
..-.+|..+|.+||++- ...+-.+ .+.|. ....++ .-.+|+.|+||...-. .=--+.-+
T Consensus 121 ~GI~lA~~lA~~L~~p~-vi~Rk~~~~~~~~~v~~y~s~s~~~~~~~~l~~~~l~~G~rVLIVDDvi~----TG~Tl~~~ 195 (238)
T PRK08558 121 DGIPLAVAIASYFGADL-VYAKKSKETGVEKFYEEYQRLASGIEVTLYLPASALKKGDRVLIVDDIIR----SGETQRAL 195 (238)
T ss_pred ccHHHHHHHHHHHCcCE-EEEEecCCCCCcceEEEeeccCCCceeEEEecHHHcCCcCEEEEEecccc----cCHHHHHH
Confidence 55678999999999982 2211111 11221 122233 2258999999964311 11135567
Q ss_pred HHHHhhhCCCeEEE
Q psy17482 85 INACKIASASRVTA 98 (353)
Q Consensus 85 ~~a~r~~~a~~i~~ 98 (353)
++.++++||+-+-+
T Consensus 196 ~~ll~~~ga~vvgv 209 (238)
T PRK08558 196 LDLARQAGADVVGV 209 (238)
T ss_pred HHHHHHcCCEEEEE
Confidence 78889999875533
No 202
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=27.12 E-value=98 Score=23.91 Aligned_cols=32 Identities=19% Similarity=0.239 Sum_probs=25.1
Q ss_pred CCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEE
Q psy17482 248 DRVAILVDDMADTCGTICHAAEKLMEAGATKVYAI 282 (353)
Q Consensus 248 Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~ 282 (353)
++.+++ ++.+|.+...++..|++.|-..|+.+
T Consensus 54 ~~~iv~---~c~~g~~s~~~~~~L~~~g~~~v~~l 85 (99)
T cd01527 54 ANAIIF---HCRSGMRTQQNAERLAAISAGEAYVL 85 (99)
T ss_pred CCcEEE---EeCCCchHHHHHHHHHHcCCccEEEe
Confidence 456666 47899888899999999998876544
No 203
>PRK08373 aspartate kinase; Validated
Probab=27.04 E-value=3.2e+02 Score=27.18 Aligned_cols=22 Identities=27% Similarity=0.191 Sum_probs=19.6
Q ss_pred CCCcchHHHHHHHHHHcCCCEE
Q psy17482 138 SRAPISAKLVANMLSVAGADHI 159 (353)
Q Consensus 138 ~~e~isak~vA~lL~~~g~d~V 159 (353)
-||-+|+++++..|...|++..
T Consensus 108 ~GE~lSa~lla~~L~~~Gi~a~ 129 (341)
T PRK08373 108 FGERLSAVLFAEALENEGIKGK 129 (341)
T ss_pred HHHHHHHHHHHHHHHHCCCceE
Confidence 4899999999999999998765
No 204
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=26.44 E-value=86 Score=24.27 Aligned_cols=46 Identities=28% Similarity=0.279 Sum_probs=28.6
Q ss_pred ccCChHHHHHHHHHHHhcCCCEEEEEEEeccCC--hhHHHHHhhcCCCEEEEec
Q psy17482 257 MADTCGTICHAAEKLMEAGATKVYAILTHGIFS--GPAINRINNACFEAVVVTN 308 (353)
Q Consensus 257 II~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs--~~a~~~l~~s~id~ii~Tn 308 (353)
++.|++| ++.|++.|... .. ..+.+.. .+..+.+.+..++-|+.|-
T Consensus 16 i~AT~gT----a~~L~~~Gi~~-~~-~~~ki~~~~~~i~~~i~~g~id~VIn~~ 63 (90)
T smart00851 16 LVATGGT----AKFLREAGLPV-KT-LHPKVHGGILAILDLIKNGEIDLVINTL 63 (90)
T ss_pred EEEccHH----HHHHHHCCCcc-ee-ccCCCCCCCHHHHHHhcCCCeEEEEECC
Confidence 4578888 57788888642 10 1112211 2477888888899888754
No 205
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=26.29 E-value=5.4e+02 Score=25.02 Aligned_cols=97 Identities=22% Similarity=0.346 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCCEEEEEcCChhHHhcccCccccc---cccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcC
Q psy17482 145 KLVANMLSVAGADHIITMDLHASQIQGFFDIPVDN---LYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLN 221 (353)
Q Consensus 145 k~vA~lL~~~g~d~VitvDlHs~~~~~~F~ip~~~---l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg 221 (353)
+++.++=++- -.+||++ +|.....++|.+|... +.-+..+-+.|++.-.+..-++++--..|-+.-|..+++.+.
T Consensus 38 ~~i~~ie~kr-~srvI~~-Ihrqe~~~~~giPi~~~I~i~dse~v~raI~~~~~~~~IdLii~TpGG~v~AA~~I~~~l~ 115 (285)
T PF01972_consen 38 RLIREIEEKR-GSRVITL-IHRQERVSFLGIPIYRYIDIDDSEFVLRAIREAPKDKPIDLIIHTPGGLVDAAEQIARALR 115 (285)
T ss_pred HHHHHHHHHh-CCEEEEE-EEeccccceeccccceeEcHhhHHHHHHHHHhcCCCCceEEEEECCCCcHHHHHHHHHHHH
Confidence 3444443433 3678775 5665566777777643 333556667776542222223555555555555667776653
Q ss_pred CcEEEEEEeecCCCceEEEEeecCCCCCEEEEEecccCChHHHHH
Q psy17482 222 VEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICH 266 (353)
Q Consensus 222 ~~~~~l~K~R~~~~~v~~~~~~gdv~Gk~VlIVDDII~TG~Tl~~ 266 (353)
- -.++..++|-+-.-||||+.+
T Consensus 116 ~-----------------------~~~~v~v~VP~~A~SAGTlIA 137 (285)
T PF01972_consen 116 E-----------------------HPAKVTVIVPHYAMSAGTLIA 137 (285)
T ss_pred h-----------------------CCCCEEEEECcccccHHHHHH
Confidence 1 123344566666777777765
No 206
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=26.02 E-value=2.1e+02 Score=29.77 Aligned_cols=73 Identities=16% Similarity=0.156 Sum_probs=43.2
Q ss_pred HHHHHHHHHhCCCccCC------CccccC--CCCc-----eeEEe---CCccCCceEEEEecCCCCCchHHHHHHHHHHH
Q psy17482 24 FFAKQNAEYKGVQRYIP------PRLSPE--DRGQ-----IGVEI---GESVRGEDVYIVQSGSGEVNDNLMELLIMINA 87 (353)
Q Consensus 24 ~~~~~~~~~~~~~~~~~------~~~~~f--~dGE-----~~v~i---~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a 87 (353)
..|..+|+.+|++ +.. ..-.+| +..+ ..+.+ .+.+.|+.|+||-.... --..| --++++
T Consensus 304 ~~A~g~a~~~gip-~~~~L~r~r~~~r~fi~~~q~~R~~~~~~kl~~~~~~i~gk~VlLVDDsit--tGtTl--~~~~~~ 378 (474)
T PRK06388 304 SQAIGFSMASGIP-YTEGLIKNRYSERTFIMPTQSDRKAAIKLKLNPIREVISGKRIVLVDDSIV--RGNTM--RFIVKI 378 (474)
T ss_pred HHHHHHHHHhCCC-chhheEEecccCCcccCCchhhhhhceeEEeccccccccCceEEEEeCeEC--cHHHH--HHHHHH
Confidence 3488999999997 322 000111 1211 22322 24568999999864211 12233 357789
Q ss_pred HhhhCCCeEEEEee
Q psy17482 88 CKIASASRVTAVIP 101 (353)
Q Consensus 88 ~r~~~a~~i~~viP 101 (353)
||++||++|.+.+-
T Consensus 379 L~~aGak~V~~ri~ 392 (474)
T PRK06388 379 MRKYGAKEVHVRIG 392 (474)
T ss_pred HHHcCCCEEEEEeC
Confidence 99999999998764
No 207
>PRK14974 cell division protein FtsY; Provisional
Probab=25.64 E-value=1.7e+02 Score=28.95 Aligned_cols=122 Identities=15% Similarity=0.180 Sum_probs=63.5
Q ss_pred HHHHHHHHHhhCCCCCCeEEEecC---CCchhhHHHHHHHcCCcEEEEEEeecCCCceEEEEe-ecCCCCCEEEEEeccc
Q psy17482 183 EPAVLKWIKENIPEWKNSIIVSPD---AGGAKRVTSIADRLNVEFALIHKERKKANEVASMVL-VGDVKDRVAILVDDMA 258 (353)
Q Consensus 183 ~~~La~~i~~~~~~~~~~vvVspd---~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~v~~~~~-~gdv~Gk~VlIVDDII 258 (353)
...++.++.+. ....++++.| .|+....+..++.+|+|+.... .......+....+ ...-.|.+++|||--=
T Consensus 157 iakLA~~l~~~---g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~-~g~dp~~v~~~ai~~~~~~~~DvVLIDTaG 232 (336)
T PRK14974 157 IAKLAYYLKKN---GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHK-YGADPAAVAYDAIEHAKARGIDVVLIDTAG 232 (336)
T ss_pred HHHHHHHHHHc---CCeEEEecCCcCcHHHHHHHHHHHHHcCCceeccc-CCCCHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 44567777653 2356778888 4666777788899998863211 0000000000000 0123577899998653
Q ss_pred CC---hHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHh----hcCCCEEEEecC
Q psy17482 259 DT---CGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRIN----NACFEAVVVTNT 309 (353)
Q Consensus 259 ~T---G~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~----~s~id~ii~TnT 309 (353)
.. ..-|.+..+..+..++..+..+. -+.-..++.+... ..+++.+|.|-.
T Consensus 233 r~~~~~~lm~eL~~i~~~~~pd~~iLVl-~a~~g~d~~~~a~~f~~~~~~~giIlTKl 289 (336)
T PRK14974 233 RMHTDANLMDELKKIVRVTKPDLVIFVG-DALAGNDAVEQAREFNEAVGIDGVILTKV 289 (336)
T ss_pred ccCCcHHHHHHHHHHHHhhCCceEEEee-ccccchhHHHHHHHHHhcCCCCEEEEeee
Confidence 22 22344444444445666554433 2333344444332 247889988754
No 208
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=25.61 E-value=1.3e+02 Score=22.87 Aligned_cols=31 Identities=26% Similarity=0.124 Sum_probs=23.9
Q ss_pred CCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEE
Q psy17482 248 DRVAILVDDMADTCGTICHAAEKLMEAGATKVYAI 282 (353)
Q Consensus 248 Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~ 282 (353)
+++++++. ++|.....++..|++.|- +|+.+
T Consensus 51 ~~~vvl~c---~~g~~a~~~a~~L~~~G~-~v~~l 81 (90)
T cd01524 51 DKEIIVYC---AVGLRGYIAARILTQNGF-KVKNL 81 (90)
T ss_pred CCcEEEEc---CCChhHHHHHHHHHHCCC-CEEEe
Confidence 46788874 468888889999999998 66554
No 209
>PLN02962 hydroxyacylglutathione hydrolase
Probab=25.40 E-value=98 Score=29.26 Aligned_cols=48 Identities=23% Similarity=0.291 Sum_probs=32.3
Q ss_pred CCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCCh-hHHHHHh
Q psy17482 247 KDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSG-PAINRIN 297 (353)
Q Consensus 247 ~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~-~a~~~l~ 297 (353)
.++.++|||-.- .......+.|++.|.+-.+++.||+=+.. ++...|.
T Consensus 34 ~~~~avlIDP~~---~~~~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~ 82 (251)
T PLN02962 34 PDKPALLIDPVD---KTVDRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLK 82 (251)
T ss_pred CCCEEEEECCCC---CcHHHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHH
Confidence 467899999531 13344457888889888899999987664 2334443
No 210
>PLN02389 biotin synthase
Probab=25.33 E-value=1.6e+02 Score=29.58 Aligned_cols=41 Identities=15% Similarity=0.166 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcCCCEEEE
Q psy17482 263 TICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVV 306 (353)
Q Consensus 263 Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~id~ii~ 306 (353)
.+.++++.+|+.| +.++++.|+++.+.+++|.++|++.+-.
T Consensus 154 ~i~eiir~ik~~~---l~i~~s~G~l~~E~l~~LkeAGld~~~~ 194 (379)
T PLN02389 154 QILEYVKEIRGMG---MEVCCTLGMLEKEQAAQLKEAGLTAYNH 194 (379)
T ss_pred HHHHHHHHHhcCC---cEEEECCCCCCHHHHHHHHHcCCCEEEe
Confidence 4566666676544 4456788999999999999999998754
No 211
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=25.33 E-value=1.1e+02 Score=25.68 Aligned_cols=48 Identities=23% Similarity=0.317 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhh------cCCCEEEEecCC
Q psy17482 262 GTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINN------ACFEAVVVTNTI 310 (353)
Q Consensus 262 ~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~------s~id~ii~TnTi 310 (353)
-|+.++.+.|.+.|.++|.+.-+| +|.+.-.+.|.+ .+..+|.++.-+
T Consensus 56 p~~~eaL~~l~~~G~~~V~V~Pl~-l~~G~e~~di~~~v~~~~~~~~~i~~g~pL 109 (127)
T cd03412 56 DTPEEALAKLAADGYTEVIVQSLH-IIPGEEYEKLKREVDAFKKGFKKIKLGRPL 109 (127)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeCe-eECcHHHHHHHHHHHHHhCCCceEEEccCC
Confidence 478899999999999999999888 666644444432 234455555543
No 212
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=25.19 E-value=2e+02 Score=26.22 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=25.0
Q ss_pred CCCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEE
Q psy17482 245 DVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILT 284 (353)
Q Consensus 245 dv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~t 284 (353)
+++||+|+|| -.|..-..-++.|.+.||. |.+++.
T Consensus 6 ~l~gk~vlVv----GgG~va~rk~~~Ll~~ga~-VtVvsp 40 (205)
T TIGR01470 6 NLEGRAVLVV----GGGDVALRKARLLLKAGAQ-LRVIAE 40 (205)
T ss_pred EcCCCeEEEE----CcCHHHHHHHHHHHHCCCE-EEEEcC
Confidence 6789999987 3444445668888899984 666663
No 213
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=24.74 E-value=4.4e+02 Score=24.95 Aligned_cols=161 Identities=14% Similarity=0.043 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHcCCCEEEEEcCChh-----HHhcccCccccccccHHHHHHHHHhhCCCCCCeEEEecCC-CchhhHHHH
Q psy17482 143 SAKLVANMLSVAGADHIITMDLHAS-----QIQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDA-GGAKRVTSI 216 (353)
Q Consensus 143 sak~vA~lL~~~g~d~VitvDlHs~-----~~~~~F~ip~~~l~a~~~La~~i~~~~~~~~~~vvVspd~-Gg~~ra~~l 216 (353)
.+..++.+++..++-.|....-+.. ....+|..-...-.....+++++....++.+...++.++. .|...+..+
T Consensus 79 ~~~~~~~~~~~~~ip~i~~~s~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~g~~~~~~~ 158 (346)
T cd06330 79 VALAVAPVAEELKVFFIATDPGTPRLTEEPDNPYVFRTRNSTIMDAVAGALYAAKLDKKAKTWATINPDYAYGQDAWADF 158 (346)
T ss_pred HHHHHHHHHHHcCCeEEEcCCCCcccccCCCCCceEEecCChHHHHHHHHHHHHHhCcCccEEEEECCchHHHHHHHHHH
Confidence 3556777787777655543222211 1223443322334456677788876532345677777662 333333333
Q ss_pred ---HHHcCCcEEEEEEeecCCCceEEEEeecCC--CCCEEEEEecccCChHHHHHHHHHHHhcCCC-EEEEEEEeccCCh
Q psy17482 217 ---ADRLNVEFALIHKERKKANEVASMVLVGDV--KDRVAILVDDMADTCGTICHAAEKLMEAGAT-KVYAILTHGIFSG 290 (353)
Q Consensus 217 ---a~~Lg~~~~~l~K~R~~~~~v~~~~~~gdv--~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~-~V~~~~tHglfs~ 290 (353)
+++.|..+.++.......+..........+ .+-+++++- ..|......++.+++.|-. .+.++.+.+....
T Consensus 159 ~~~~~~~g~~~~~v~~~~~~~~~~d~~~~v~~i~~~~~d~ii~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 235 (346)
T cd06330 159 KAALKRLRPDVEVVSEQWPKLGAPDYGSEITALLAAKPDAIFSS---LWGGDLVTFVRQANARGLFDGTTVVLTLTGAPE 235 (346)
T ss_pred HHHHHHhCCCCeecccccCCCCCcccHHHHHHHHhcCCCEEEEe---cccccHHHHHHHHHhcCcccCceEEeeccchhh
Confidence 334443443333222211111111111122 244566642 3344556677778888863 3555555444332
Q ss_pred hHHHHHhhcCCCEEEEec
Q psy17482 291 PAINRINNACFEAVVVTN 308 (353)
Q Consensus 291 ~a~~~l~~s~id~ii~Tn 308 (353)
...+.....+.++++-
T Consensus 236 --~~~~~~~~~~g~~~~~ 251 (346)
T cd06330 236 --LAPLGDEMPEGVIIGG 251 (346)
T ss_pred --hhhhhcccCCceEEec
Confidence 2233323345555443
No 214
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=24.61 E-value=96 Score=29.53 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=35.5
Q ss_pred EEEEEecccCChHH--HHHHHHHHHhc-CCCEEEEEEEeccCChhHHHHHhhcCCCEEEEe
Q psy17482 250 VAILVDDMADTCGT--ICHAAEKLMEA-GATKVYAILTHGIFSGPAINRINNACFEAVVVT 307 (353)
Q Consensus 250 ~VlIVDDII~TG~T--l~~aa~~Lk~~-GA~~V~~~~tHglfs~~a~~~l~~s~id~ii~T 307 (353)
+++|+|.+++.|-. ..+|.+.+.+. -.....++++| +.+++++ .+++++.-
T Consensus 167 dILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSH---d~~~I~~----~Cd~~i~l 220 (249)
T COG1134 167 DILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSH---DLGAIKQ----YCDRAIWL 220 (249)
T ss_pred CEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEEC---CHHHHHH----hcCeeEEE
Confidence 79999999999965 55677777665 33467788889 3455544 45566643
No 215
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.53 E-value=2.9e+02 Score=26.72 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=44.8
Q ss_pred CCCEEEEEecccCChHHHHHHHHHHHhcCC-CEEEEEEEeccCChhHHHHHhhcCCCEEEEec
Q psy17482 247 KDRVAILVDDMADTCGTICHAAEKLMEAGA-TKVYAILTHGIFSGPAINRINNACFEAVVVTN 308 (353)
Q Consensus 247 ~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA-~~V~~~~tHglfs~~a~~~l~~s~id~ii~Tn 308 (353)
.|-++|++|-+ +-.++.++.+.+++.|. .++.+.++=|+ ..+-++.+.+.|+|.|.+.-
T Consensus 201 agaDiI~LDn~--~~e~l~~~v~~l~~~~~~~~~~leaSGGI-~~~ni~~yA~tGvD~Is~ga 260 (278)
T PRK08385 201 AGADIIMLDNM--TPEEIREVIEALKREGLRERVKIEVSGGI-TPENIEEYAKLDVDVISLGA 260 (278)
T ss_pred cCcCEEEECCC--CHHHHHHHHHHHHhcCcCCCEEEEEECCC-CHHHHHHHHHcCCCEEEeCh
Confidence 36679999999 78899999999998874 35767766555 55556667778999887644
No 216
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.15 E-value=5.6e+02 Score=25.82 Aligned_cols=70 Identities=9% Similarity=0.152 Sum_probs=38.2
Q ss_pred HHHHHHHcCCCEEEEEcCChhHHhcccC--ccccccccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHH
Q psy17482 147 VANMLSVAGADHIITMDLHASQIQGFFD--IPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIAD 218 (353)
Q Consensus 147 vA~lL~~~g~d~VitvDlHs~~~~~~F~--ip~~~l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~ 218 (353)
+.+++... ++.|+.+..+...+...+. .++..........+++.+.. ...+.|++||.-++....+.+.+
T Consensus 363 l~~~l~~~-~~~vil~G~~~~~i~~~l~~~~~~~~~~~~~~a~~~a~~~a-~~gdvVL~SPa~aSfd~f~~~~~ 434 (448)
T PRK03803 363 LREPVAKY-VRAVVLIGRDADKIAAALGGAVPLVRVATLAEAVAKAAELA-QAGDIVLLSPACASLDMFKNFEA 434 (448)
T ss_pred HHHHHHhh-CCEEEEECCCHHHHHHHHhcCCCEEEeCCHHHHHHHHHHhC-CCCCEEEeCchhhcccccCCHHH
Confidence 34444433 6788888877766643332 12211222333444444332 23568999998888776665544
No 217
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=23.95 E-value=6e+02 Score=23.78 Aligned_cols=70 Identities=14% Similarity=0.135 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHcCCCEEEEEcCChhHHhcccCccccccccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHHHcCC
Q psy17482 143 SAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNV 222 (353)
Q Consensus 143 sak~vA~lL~~~g~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~~Lg~ 222 (353)
..-.+|+.+...|+++++.+|+.......- .| -.+.+.+.+.. .-++.++-......-+..+. .+|.
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~-----~n----~~~i~~i~~~~---~~pv~~gGGi~s~~d~~~l~-~~G~ 97 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASKRGSE-----PN----YELIENLASEC---FMPLCYGGGIKTLEQAKKIF-SLGV 97 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCCc-----cc----HHHHHHHHHhC---CCCEEECCCCCCHHHHHHHH-HCCC
Confidence 445678889999999999999976532211 11 22334444432 24566665555554444443 3355
Q ss_pred cEE
Q psy17482 223 EFA 225 (353)
Q Consensus 223 ~~~ 225 (353)
...
T Consensus 98 ~~v 100 (258)
T PRK01033 98 EKV 100 (258)
T ss_pred CEE
Confidence 433
No 218
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=23.95 E-value=2.6e+02 Score=28.44 Aligned_cols=84 Identities=17% Similarity=0.179 Sum_probs=50.1
Q ss_pred CCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChh----HHHHHhhcCCCEEEEecCCCCCCCCCCCCCee
Q psy17482 248 DRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGP----AINRINNACFEAVVVTNTIPQDGHMKDCTKIR 323 (353)
Q Consensus 248 Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~----a~~~l~~s~id~ii~TnTi~~~~~~~~~~ki~ 323 (353)
.+.+||+ +.|=.+....++.|++.|- .+.+.||-++.. +++.+.+..++-+++||....--.....+-+-
T Consensus 245 ~~~~lVF---~~t~~~~~~l~~~L~~~g~---~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI 318 (456)
T PRK10590 245 WQQVLVF---TRTKHGANHLAEQLNKDGI---RSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVV 318 (456)
T ss_pred CCcEEEE---cCcHHHHHHHHHHHHHCCC---CEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEE
Confidence 4566665 4555667778888888774 456679887753 45556666788888999875432222223333
Q ss_pred EEehHHHHHHHHHH
Q psy17482 324 CIDVSMMFAEAVRR 337 (353)
Q Consensus 324 ~lsva~lla~~i~~ 337 (353)
..++..-..+.+.|
T Consensus 319 ~~~~P~~~~~yvqR 332 (456)
T PRK10590 319 NYELPNVPEDYVHR 332 (456)
T ss_pred EeCCCCCHHHhhhh
Confidence 33444444445544
No 219
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=23.79 E-value=7.3e+02 Score=25.18 Aligned_cols=144 Identities=14% Similarity=0.144 Sum_probs=72.1
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEcCCh---h--HHhcccC-ccccccccHHHHHHHHHhhCCCCCCeEEEecCC-Cchhh
Q psy17482 140 APISAKLVANMLSVAGADHIITMDLHA---S--QIQGFFD-IPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDA-GGAKR 212 (353)
Q Consensus 140 e~isak~vA~lL~~~g~d~VitvDlHs---~--~~~~~F~-ip~~~l~a~~~La~~i~~~~~~~~~~vvVspd~-Gg~~r 212 (353)
.+-.+..++.++...++-.|-..--+. . +..-||. .|.+. ..+..+++.+.. . +++...++.-+. -|...
T Consensus 114 ~S~~s~ava~~~~~~~IP~Is~~sts~~Ls~~~~~~~ffRt~psd~-~qa~ai~~ll~~-~-~W~~Vaii~~~~~yG~~~ 190 (458)
T cd06375 114 YSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDF-YQAKAMAEILRF-F-NWTYVSTVASEGDYGETG 190 (458)
T ss_pred CchHHHHHHHHhhhccccceeeccCChhhcccccCCCeEEecCCcH-HHHHHHHHHHHH-C-CCeEEEEEEeCchHHHHH
Confidence 334566678888877665553322111 1 1223443 34444 456667777743 3 566666666543 25555
Q ss_pred HHHHHH---HcCCcEEEEEEeecCCCceEEEEeecCC---CCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEec
Q psy17482 213 VTSIAD---RLNVEFALIHKERKKANEVASMVLVGDV---KDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHG 286 (353)
Q Consensus 213 a~~la~---~Lg~~~~~l~K~R~~~~~v~~~~~~gdv---~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHg 286 (353)
+..+.+ ..|+.++...+.+...+......+...+ .+-+|||+.= +........+.+++.|.. ...+.+.|
T Consensus 191 ~~~~~~~~~~~gi~i~~~~~i~~~~~~~d~~~~l~~l~~~~~a~vVvl~~---~~~~~~~ll~~a~~~g~~-~~wigs~~ 266 (458)
T cd06375 191 IEAFEQEARLRNICIATSEKVGRSADRKSYDSVIRKLLQKPNARVVVLFT---RSEDARELLAAAKRLNAS-FTWVASDG 266 (458)
T ss_pred HHHHHHHHHHCCeeEEEEEEecCCCCHHHHHHHHHHHhccCCCEEEEEec---ChHHHHHHHHHHHHcCCc-EEEEEecc
Confidence 555443 4455444333333221111000111121 3567777643 345566677778888888 33445666
Q ss_pred cCCh
Q psy17482 287 IFSG 290 (353)
Q Consensus 287 lfs~ 290 (353)
..+.
T Consensus 267 ~~~~ 270 (458)
T cd06375 267 WGAQ 270 (458)
T ss_pred cccc
Confidence 6544
No 220
>PLN02160 thiosulfate sulfurtransferase
Probab=23.69 E-value=1.3e+02 Score=25.49 Aligned_cols=33 Identities=18% Similarity=0.142 Sum_probs=27.0
Q ss_pred CCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEE
Q psy17482 247 KDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAI 282 (353)
Q Consensus 247 ~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~ 282 (353)
++++++++ |.+|.+-..+++.|++.|-+.|+.+
T Consensus 80 ~~~~Iivy---C~sG~RS~~Aa~~L~~~G~~~v~~l 112 (136)
T PLN02160 80 PADDILVG---CQSGARSLKATTELVAAGYKKVRNK 112 (136)
T ss_pred CCCcEEEE---CCCcHHHHHHHHHHHHcCCCCeeec
Confidence 35567776 6899999999999999999887654
No 221
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=23.54 E-value=1.9e+02 Score=27.85 Aligned_cols=72 Identities=19% Similarity=0.068 Sum_probs=38.7
Q ss_pred cCHHHHHHHHHHhCCCccCCCccccCCCCce--------------eEEeC-Cc-cCCceEEEEecCCCCCchHHHHHHHH
Q psy17482 21 ASHFFAKQNAEYKGVQRYIPPRLSPEDRGQI--------------GVEIG-ES-VRGEDVYIVQSGSGEVNDNLMELLIM 84 (353)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~f~dGE~--------------~v~i~-~~-vrg~dv~iiqs~~~~~nd~lmeLll~ 84 (353)
..-.||..+|.+||++-....+-.+...|++ ...+. .. .+|+.|+||...-..- . -+.-+
T Consensus 138 kGIpLA~avA~~L~vp~vivRK~~K~t~g~~vs~nY~sgs~~~ie~m~l~k~~l~~G~rVLIVDDv~~TG-g---Ti~a~ 213 (268)
T TIGR01743 138 KGIPLAYAVASVLNVPLVIVRKDSKVTEGSTVSINYVSGSSNRIQTMSLAKRSLKTGSKVLIIDDFMKAG-G---TINGM 213 (268)
T ss_pred chHHHHHHHHHHHCCCEEEEEECCCCCCCCcEEEEEEcccCccceEEEEehhhCCCcCEEEEEeeecccC-H---HHHHH
Confidence 4557899999999998211111112222321 11111 12 4789999986421100 1 34456
Q ss_pred HHHHhhhCCCeE
Q psy17482 85 INACKIASASRV 96 (353)
Q Consensus 85 ~~a~r~~~a~~i 96 (353)
++.++++||+=+
T Consensus 214 i~Ll~e~Ga~Vv 225 (268)
T TIGR01743 214 INLLDEFDAEVA 225 (268)
T ss_pred HHHHHHCCCEEE
Confidence 777888888643
No 222
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=23.44 E-value=1.4e+02 Score=23.16 Aligned_cols=32 Identities=16% Similarity=0.318 Sum_probs=25.1
Q ss_pred CCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEE
Q psy17482 248 DRVAILVDDMADTCGTICHAAEKLMEAGATKVYAI 282 (353)
Q Consensus 248 Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~ 282 (353)
++.+++++ ++|.+...++..|+..|-..|+.+
T Consensus 65 ~~~vv~~c---~~g~~s~~~a~~L~~~G~~~v~~l 96 (105)
T cd01525 65 GKIIVIVS---HSHKHAALFAAFLVKCGVPRVCIL 96 (105)
T ss_pred CCeEEEEe---CCCccHHHHHHHHHHcCCCCEEEE
Confidence 66788875 567777788889999999988754
No 223
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=23.42 E-value=3.8e+02 Score=21.60 Aligned_cols=80 Identities=8% Similarity=0.135 Sum_probs=38.7
Q ss_pred chHHHHHHHHHHcCCCEEEEEcCChhH-Hh------cccCcccccccc---HHHHHHHHHhhCCCCCCeEEEecCCCchh
Q psy17482 142 ISAKLVANMLSVAGADHIITMDLHASQ-IQ------GFFDIPVDNLYA---EPAVLKWIKENIPEWKNSIIVSPDAGGAK 211 (353)
Q Consensus 142 isak~vA~lL~~~g~d~VitvDlHs~~-~~------~~F~ip~~~l~a---~~~La~~i~~~~~~~~~~vvVspd~Gg~~ 211 (353)
+++..+.++++.. +..+.+|+-+++ ++ +-.++|..++.. ...+..++.......+..++++.......
T Consensus 1 is~~el~~~l~~~--~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~~~ivv~C~~G~rs~ 78 (117)
T cd01522 1 LTPAEAWALLQAD--PQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDMEINPNFLAELEEKVGKDRPVLLLCRSGNRSI 78 (117)
T ss_pred CCHHHHHHHHHhC--CCeEEEECCCHHHHhcccCCCCceecchhhccccccCHHHHHHHHhhCCCCCeEEEEcCCCccHH
Confidence 3567777888762 357788988653 22 223455544322 12233444332222234455554322233
Q ss_pred hHHHHHHHcCCc
Q psy17482 212 RVTSIADRLNVE 223 (353)
Q Consensus 212 ra~~la~~Lg~~ 223 (353)
.+......+|.+
T Consensus 79 ~aa~~L~~~G~~ 90 (117)
T cd01522 79 AAAEAAAQAGFT 90 (117)
T ss_pred HHHHHHHHCCCC
Confidence 344444555654
No 224
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=23.29 E-value=4.3e+02 Score=24.13 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=18.0
Q ss_pred CCCcchHHHHHHHHHHcCCCE
Q psy17482 138 SRAPISAKLVANMLSVAGADH 158 (353)
Q Consensus 138 ~~e~isak~vA~lL~~~g~d~ 158 (353)
-||.++++.++..|++.|.+.
T Consensus 56 ~Ge~~~~~l~~~~l~~~Gi~a 76 (227)
T cd04234 56 FGERLSARLLAAALRDRGIKA 76 (227)
T ss_pred HHHHHHHHHHHHHHHHCCCCe
Confidence 478899999999999999753
No 225
>KOG2355|consensus
Probab=23.04 E-value=1.5e+02 Score=27.95 Aligned_cols=75 Identities=25% Similarity=0.381 Sum_probs=43.2
Q ss_pred hhHHHHHHHcCCcEEE-EEEeecCCCceEEEE-eecCCCCCEEEEEecc------cCChHHHHHHHHHHHhcCCCEEEEE
Q psy17482 211 KRVTSIADRLNVEFAL-IHKERKKANEVASMV-LVGDVKDRVAILVDDM------ADTCGTICHAAEKLMEAGATKVYAI 282 (353)
Q Consensus 211 ~ra~~la~~Lg~~~~~-l~K~R~~~~~v~~~~-~~gdv~Gk~VlIVDDI------I~TG~Tl~~aa~~Lk~~GA~~V~~~ 282 (353)
.|-..+-+.|++++.+ ++| -+.++..... --|-++--+|+++|.+ +.-..-+.-.-+...++||.-| +
T Consensus 128 ~Rre~LI~iLDIdl~WRmHk--vSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIV--Y 203 (291)
T KOG2355|consen 128 ERREKLIDILDIDLRWRMHK--VSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIV--Y 203 (291)
T ss_pred hHhhhhhhheeccceEEEee--ccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEE--E
Confidence 4667777888777653 333 2333322111 1344566689998855 4444444444455667788754 5
Q ss_pred EEeccCCh
Q psy17482 283 LTHGIFSG 290 (353)
Q Consensus 283 ~tHglfs~ 290 (353)
+|| +|.+
T Consensus 204 ATH-IFDG 210 (291)
T KOG2355|consen 204 ATH-IFDG 210 (291)
T ss_pred Eee-eccc
Confidence 688 8875
No 226
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=22.95 E-value=2.6e+02 Score=24.96 Aligned_cols=78 Identities=17% Similarity=0.146 Sum_probs=46.3
Q ss_pred ccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhhcCCC--------EEEEecCCCCCCCC-CCCCCeeEEeh
Q psy17482 257 MADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFE--------AVVVTNTIPQDGHM-KDCTKIRCIDV 327 (353)
Q Consensus 257 II~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~s~id--------~ii~TnTi~~~~~~-~~~~ki~~lsv 327 (353)
+.+.=..+.+.++.|+++|+++|.++-.=+....+..+.++..+++ +++-.|.-+..... .....++.+.+
T Consensus 18 ~~T~P~vv~avv~~l~~~g~~~i~i~e~~~~~~~~~~~~~~~~G~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~v 97 (206)
T PF04015_consen 18 ATTHPEVVRAVVEMLKEAGAKEIIIAESPGSGAADTREVFKRSGYEEIAEEYGAELVDLDDEPWVEVPLPGGEHLKEFKV 97 (206)
T ss_pred ccCCHHHHHHHHHHHHHcCCCceEEEeCCCcchHhHHHHHHHcchhhHHHhcCCcEEEccCCcccceeccCCeeeeeEEh
Confidence 3455567888999999999998877763222113444555544433 34444444432211 12345778889
Q ss_pred HHHHHHH
Q psy17482 328 SMMFAEA 334 (353)
Q Consensus 328 a~lla~~ 334 (353)
+..+.|+
T Consensus 98 ~~~~~ea 104 (206)
T PF04015_consen 98 PRILLEA 104 (206)
T ss_pred hHHHHhC
Confidence 8888884
No 227
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=22.69 E-value=5.5e+02 Score=26.87 Aligned_cols=133 Identities=15% Similarity=0.191 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHcCCCEEEEEcC--ChhHHhc----ccCccccccccHHHHHHHHHhhCCCCCCeEEEecCC---CchhhH
Q psy17482 143 SAKLVANMLSVAGADHIITMDL--HASQIQG----FFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDA---GGAKRV 213 (353)
Q Consensus 143 sak~vA~lL~~~g~d~VitvDl--Hs~~~~~----~F~ip~~~l~a~~~La~~i~~~~~~~~~~vvVspd~---Gg~~ra 213 (353)
..+.+-++|+.+|++-..++.. +-.+++. -+|+.... .....+++++.+++ .-|.+..... +-..|-
T Consensus 176 D~~EikrlL~~~Gi~vn~v~p~g~s~~di~~l~~A~~nivl~~-~~g~~~A~~Lee~f---GiP~i~~~PiG~~~T~~fL 251 (519)
T PRK02910 176 DLTELRRLLATLGIDVNVVAPLGASPADLKRLPAAWFNVVLYR-EIGESAARYLEREF---GQPYVKTVPIGVGATARFI 251 (519)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCcEEEEeCH-HHHHHHHHHHHHHh---CCcccccccccHHHHHHHH
Confidence 4678899999999876665543 3334432 23322111 12456788888764 2333322222 234566
Q ss_pred HHHHHHcCCcEE----EEEEeecCCCce---EEEEeecCCCCCEEEEEecccCChHHHHHHHHHHH-hcCCCEEEEEE
Q psy17482 214 TSIADRLNVEFA----LIHKERKKANEV---ASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLM-EAGATKVYAIL 283 (353)
Q Consensus 214 ~~la~~Lg~~~~----~l~K~R~~~~~v---~~~~~~gdv~Gk~VlIVDDII~TG~Tl~~aa~~Lk-~~GA~~V~~~~ 283 (353)
+.+++.+|.+.. ++.+......+. ....-...+.||++.|+=| +.-....++.|. +.|..-+.+.+
T Consensus 252 ~~la~~~g~~~~~~e~~i~~~~~~~~~l~~~~~~~d~~~l~Gkrv~I~gd----~~~a~~l~~~L~~ElGm~vv~~gt 325 (519)
T PRK02910 252 REVAELLNLDGADLEAFILDGLSAPSRLPWFSRSVDSTYLTGKRVFVFGD----ATHAVAAARILSDELGFEVVGAGT 325 (519)
T ss_pred HHHHHHhCCChhhhHHHHHHHHhhhhhhhHHHHhhhhHhhcCCEEEEEcC----cHHHHHHHHHHHHhcCCeEEEEec
Confidence 788888887632 111111110110 0000012468999988754 334566778887 79988765544
No 228
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=22.47 E-value=5.6e+02 Score=24.95 Aligned_cols=78 Identities=15% Similarity=0.269 Sum_probs=48.0
Q ss_pred chHHHHHHHHHHcCCCEEEEEcCChhHHhcccCccccccccHHHHHHHHHhhCCCCCCeEEEecCC-------CchhhHH
Q psy17482 142 ISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDA-------GGAKRVT 214 (353)
Q Consensus 142 isak~vA~lL~~~g~d~VitvDlHs~~~~~~F~ip~~~l~a~~~La~~i~~~~~~~~~~vvVspd~-------Gg~~ra~ 214 (353)
.+...=..+|+++|+|.++.++. +-...++++...+-+.+.+.+ + -..+|++-|. |.+..-+
T Consensus 70 ~t~eeR~~~l~~~gVD~~~~~~F---------~~~~~~ls~e~Fi~~~l~~~l-~-~~~iVvG~Df~FG~~~~G~~~~L~ 138 (305)
T PRK05627 70 TPLRDKAELLAELGVDYVLVLPF---------DEEFAKLSAEEFIEDLLVKGL-N-AKHVVVGFDFRFGKKRAGDFELLK 138 (305)
T ss_pred CCHHHHHHHHHHcCCCEEEEecC---------CHHHhcCCHHHHHHHHHHhcc-C-CCEEEECCCCCCCCCCCCCHHHHH
Confidence 45677788899999999999773 212223444333333343333 1 2468888887 3455666
Q ss_pred HHHHHcCCcEEEEEEe
Q psy17482 215 SIADRLNVEFALIHKE 230 (353)
Q Consensus 215 ~la~~Lg~~~~~l~K~ 230 (353)
.+++..|..+.++...
T Consensus 139 ~~~~~~g~~v~~v~~~ 154 (305)
T PRK05627 139 EAGKEFGFEVTIVPEV 154 (305)
T ss_pred HHHHHcCcEEEEeccE
Confidence 6677778776665543
No 229
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=22.44 E-value=4.3e+02 Score=28.29 Aligned_cols=69 Identities=22% Similarity=0.294 Sum_probs=0.0
Q ss_pred CCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCeEEEEeeCCCccccccccCCCCCCCCchhHHHHhhhccccccCCC
Q psy17482 60 RGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSR 139 (353)
Q Consensus 60 rg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~i~~viPY~~YsRqDr~~~~~~~~~~~~~~~~~~~~~~~~kf~~~ 139 (353)
+++.+.|+....- |-+...-+|..++++.|+..+...|| .|......
T Consensus 68 ~~e~I~I~gDyD~---DGitstail~~~L~~~g~~~~~~~IP----~R~~eGYG-------------------------- 114 (575)
T PRK11070 68 EGTRIIVVGDFDA---DGATSTALSVLALRSLGCSNVDYLVP----NRFEDGYG-------------------------- 114 (575)
T ss_pred CCCEEEEEEecCc---cHHHHHHHHHHHHHHcCCCceEEEeC----CCCcCCCC--------------------------
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEcC
Q psy17482 140 APISAKLVANMLSVAGADHIITMDL 164 (353)
Q Consensus 140 e~isak~vA~lL~~~g~d~VitvDl 164 (353)
++...+-++.+. |++-|||+|.
T Consensus 115 --l~~~~i~~~~~~-~~~LiItvD~ 136 (575)
T PRK11070 115 --LSPEVVDQAHAR-GAQLIVTVDN 136 (575)
T ss_pred --CCHHHHHHHHhc-CCCEEEEEcC
No 230
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=22.22 E-value=1.8e+02 Score=27.62 Aligned_cols=36 Identities=14% Similarity=0.300 Sum_probs=30.9
Q ss_pred CCCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEE
Q psy17482 245 DVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILT 284 (353)
Q Consensus 245 dv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~t 284 (353)
+++||+|+|+ -+|++-..++..|.+.|+.+|+++.-
T Consensus 120 ~~~~k~vlVl----GaGg~a~ai~~aL~~~g~~~V~v~~R 155 (278)
T PRK00258 120 DLKGKRILIL----GAGGAARAVILPLLDLGVAEITIVNR 155 (278)
T ss_pred CCCCCEEEEE----cCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence 5788999877 47999999999999999888988863
No 231
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=22.12 E-value=1.6e+02 Score=23.19 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=25.2
Q ss_pred CCCEEEEEecccCChHHHHHHHHHHHhcCCCE-EEEE
Q psy17482 247 KDRVAILVDDMADTCGTICHAAEKLMEAGATK-VYAI 282 (353)
Q Consensus 247 ~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~-V~~~ 282 (353)
+++.++++ |.+|..-..++..|++.|-+. |+.+
T Consensus 65 ~~~~ivv~---C~~G~rs~~a~~~L~~~G~~~~v~~l 98 (109)
T cd01533 65 PRTPIVVN---CAGRTRSIIGAQSLINAGLPNPVAAL 98 (109)
T ss_pred CCCeEEEE---CCCCchHHHHHHHHHHCCCCcceeEe
Confidence 35677777 678877777899999999876 5543
No 232
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=22.09 E-value=9.1e+02 Score=25.17 Aligned_cols=153 Identities=20% Similarity=0.212 Sum_probs=87.3
Q ss_pred HHHHHHHhCCCc-cCCCccccCCCCceeEEeCCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhCC--CeEEEEeeC
Q psy17482 26 AKQNAEYKGVQR-YIPPRLSPEDRGQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASA--SRVTAVIPC 102 (353)
Q Consensus 26 ~~~~~~~~~~~~-~~~~~~~~f~dGE~~v~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a--~~i~~viPY 102 (353)
|-.+|..+|++. ...-.+..|.+=--+.++...+.| +.++....+++ -|..-.++|+|..-. +||.+|.==
T Consensus 288 aia~a~~~Gi~~~~i~~aL~~F~GvkRRfe~~g~~~~--~~viDDYaHHP----tEI~aTL~aaR~~~~~~~rIvaifQP 361 (459)
T COG0773 288 AIAVARELGIDPEAIAEALASFQGVKRRFELKGEVNG--VTVIDDYAHHP----TEIKATLAAARQKVPGGKRIVAVFQP 361 (459)
T ss_pred HHHHHHHcCCCHHHHHHHHHhCCCcceeeEEeeeECC--EEEEecCCCCH----HHHHHHHHHHHHhcCCCceEEEEECC
Confidence 456677777762 111233456655555665555555 77777654444 266677789987543 788888644
Q ss_pred CCccccccccCCCCCCCCchhHHHHhhhccccccCCCCcchHHHHHHHHHHcCCCEEEEEcCChhHHh---c------cc
Q psy17482 103 FPYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQIQ---G------FF 173 (353)
Q Consensus 103 ~~YsRqDr~~~~~~~~~~~~~~~~~~~~~~~~kf~~~e~isak~vA~lL~~~g~d~VitvDlHs~~~~---~------~F 173 (353)
.-|+|- .-..+.+++-|+ .+|.|+..|+.+..-+ + ..
T Consensus 362 HrySRt--------------------------------~~~~~dF~~~l~--~AD~v~l~~VY~A~e~~~~g~~~~~~l~ 407 (459)
T COG0773 362 HRYSRT--------------------------------RDLLDDFAKALS--DADEVILLDVYAAGEEPIEGDVSSEDLA 407 (459)
T ss_pred CchHhH--------------------------------HHHHHHHHHHHh--cCCEEEEecccccCCCCCcCCccHHHHH
Confidence 556651 124566777774 4899999986542211 1 00
Q ss_pred ---Cccccc-cccHHHHHHHHHhhCCCCCCeEEEecCCCch-hhHHHHHHHc
Q psy17482 174 ---DIPVDN-LYAEPAVLKWIKENIPEWKNSIIVSPDAGGA-KRVTSIADRL 220 (353)
Q Consensus 174 ---~ip~~~-l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~-~ra~~la~~L 220 (353)
..+... +.....+.+.+.+.. ...++++.--.|.+ +++..+.+.+
T Consensus 408 ~~i~~~~~~~~~~~~~~~~~l~~~~--~~gD~il~mGAGdi~~~~~~~~~~l 457 (459)
T COG0773 408 EKIRQPGHVDVPDLDDLVELLAKVA--QPGDVILFMGAGDIGKIARELLEAL 457 (459)
T ss_pred HHhhcCCcccCCCHHHHHHHHHhhC--CCCCEEEEecCCcHHHHHHHHHHHh
Confidence 111111 123445566665543 24567888888888 6677776654
No 233
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=22.08 E-value=74 Score=30.64 Aligned_cols=131 Identities=18% Similarity=0.111 Sum_probs=69.9
Q ss_pred chHHHHHHHHHHcCCCE-EEEEcCChhHHhc--ccCccccccccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHHH
Q psy17482 142 ISAKLVANMLSVAGADH-IITMDLHASQIQG--FFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIAD 218 (353)
Q Consensus 142 isak~vA~lL~~~g~d~-VitvDlHs~~~~~--~F~ip~~~l~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la~ 218 (353)
.-.+.+|+.|...|... |+-.|....+... .+++.-+.... .....+ ...+.+|++...+.. ..+.+
T Consensus 13 liG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~--~~~~~~-----~~aD~VivavPi~~~---~~~l~ 82 (279)
T COG0287 13 LMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVA--GLAEAA-----AEADLVIVAVPIEAT---EEVLK 82 (279)
T ss_pred hHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccc--hhhhhc-----ccCCEEEEeccHHHH---HHHHH
Confidence 45788899999888764 7778876554421 12211110000 001111 124677777663332 22333
Q ss_pred HcCCcEEEEEEeecCCCceEEEEeecCCCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHhh
Q psy17482 219 RLNVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINN 298 (353)
Q Consensus 219 ~Lg~~~~~l~K~R~~~~~v~~~~~~gdv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~~ 298 (353)
++.-. + .+.++|. |.|.|-....+.+++.+++.+.++.+||+|.+.+..-+-
T Consensus 83 ~l~~~----------------------l-~~g~iv~----Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf- 134 (279)
T COG0287 83 ELAPH----------------------L-KKGAIVT----DVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLF- 134 (279)
T ss_pred Hhccc----------------------C-CCCCEEE----ecccccHHHHHHHHHhccCCCeeEecCCCCCCccccccc-
Confidence 32100 0 1123333 367777778888888887766888899999874222221
Q ss_pred cCCCEEEEecCCC
Q psy17482 299 ACFEAVVVTNTIP 311 (353)
Q Consensus 299 s~id~ii~TnTi~ 311 (353)
.=..++.|++=.
T Consensus 135 -~~~~~vltp~~~ 146 (279)
T COG0287 135 -ENAVVVLTPSEG 146 (279)
T ss_pred -CCCEEEEcCCCC
Confidence 113566777753
No 234
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=21.96 E-value=4.4e+02 Score=26.88 Aligned_cols=84 Identities=13% Similarity=0.173 Sum_probs=50.8
Q ss_pred CEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCChh----HHHHHhhcCCCEEEEecCCCCCCCCCCCCCeeE
Q psy17482 249 RVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGP----AINRINNACFEAVVVTNTIPQDGHMKDCTKIRC 324 (353)
Q Consensus 249 k~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~----a~~~l~~s~id~ii~TnTi~~~~~~~~~~ki~~ 324 (353)
+++||+ +.|-.+.....+.|++.|- .+...||-++.. ..+.+.+..+.-+++||....--......-+-.
T Consensus 336 ~~~IVF---~~s~~~~~~l~~~L~~~~~---~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~ 409 (475)
T PRK01297 336 ERVMVF---ANRKDEVRRIEERLVKDGI---NAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN 409 (475)
T ss_pred CeEEEE---eCCHHHHHHHHHHHHHcCC---CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEE
Confidence 456655 4555677778888888774 356678877763 445555567888999998865332222333333
Q ss_pred EehHHHHHHHHHHH
Q psy17482 325 IDVSMMFAEAVRRT 338 (353)
Q Consensus 325 lsva~lla~~i~~~ 338 (353)
.+.-.-+++.+.|+
T Consensus 410 ~~~P~s~~~y~Qr~ 423 (475)
T PRK01297 410 FTLPEDPDDYVHRI 423 (475)
T ss_pred eCCCCCHHHHHHhh
Confidence 34444455555554
No 235
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=21.79 E-value=1.9e+02 Score=23.14 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=24.1
Q ss_pred CCEEEEEecccCChHHHHHHHHHHHhcCCCEEEE
Q psy17482 248 DRVAILVDDMADTCGTICHAAEKLMEAGATKVYA 281 (353)
Q Consensus 248 Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~ 281 (353)
++.++++ |.+|.....++..|++.|-..|+.
T Consensus 58 ~~~vvly---C~~G~rS~~aa~~L~~~G~~~v~~ 88 (101)
T TIGR02981 58 NDTVKLY---CNAGRQSGMAKDILLDMGYTHAEN 88 (101)
T ss_pred CCeEEEE---eCCCHHHHHHHHHHHHcCCCeEEe
Confidence 4566666 678888888899999999887764
No 236
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=21.76 E-value=1e+02 Score=23.78 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=25.8
Q ss_pred CCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEE
Q psy17482 247 KDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAI 282 (353)
Q Consensus 247 ~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~ 282 (353)
+++.++++++ +|.+...++..|++.|-+.|+.+
T Consensus 60 ~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~~l 92 (103)
T cd01447 60 EDKPFVFYCA---SGWRSALAGKTLQDMGLKPVYNI 92 (103)
T ss_pred CCCeEEEEcC---CCCcHHHHHHHHHHcChHHhEee
Confidence 4678899864 67777888999999998877643
No 237
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=21.63 E-value=1.8e+02 Score=28.23 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=31.2
Q ss_pred CCCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEE
Q psy17482 245 DVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAIL 283 (353)
Q Consensus 245 dv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~ 283 (353)
+++|++++|+ -.||+-.+++-.|++.|+++|+++-
T Consensus 123 ~~~~~~vlil----GAGGAarAv~~aL~~~g~~~i~V~N 157 (283)
T COG0169 123 DVTGKRVLIL----GAGGAARAVAFALAEAGAKRITVVN 157 (283)
T ss_pred ccCCCEEEEE----CCcHHHHHHHHHHHHcCCCEEEEEe
Confidence 5678999975 6999999999999999999999886
No 238
>PRK05320 rhodanese superfamily protein; Provisional
Probab=21.58 E-value=1.6e+02 Score=27.92 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=29.4
Q ss_pred CCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEE
Q psy17482 246 VKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAI 282 (353)
Q Consensus 246 v~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~ 282 (353)
+++|.++++ +++|.....|+..|++.|-+.|+-+
T Consensus 173 ~kdk~Ivvy---C~~G~Rs~~Aa~~L~~~Gf~~V~~L 206 (257)
T PRK05320 173 LAGKTVVSF---CTGGIRCEKAAIHMQEVGIDNVYQL 206 (257)
T ss_pred cCCCeEEEE---CCCCHHHHHHHHHHHHcCCcceEEe
Confidence 467888887 8999999999999999999988743
No 239
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=21.41 E-value=1.6e+02 Score=26.22 Aligned_cols=89 Identities=19% Similarity=0.168 Sum_probs=51.5
Q ss_pred CEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCC--------hhHHHHHhhcCCCEEEEecCCCCCCCCCC-C
Q psy17482 249 RVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFS--------GPAINRINNACFEAVVVTNTIPQDGHMKD-C 319 (353)
Q Consensus 249 k~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs--------~~a~~~l~~s~id~ii~TnTi~~~~~~~~-~ 319 (353)
|++++- -+||.|...+++++... -+|.+++-|.-|. ++..+.|.+-|. .++|-|.....-.+. .
T Consensus 29 k~~vVA---S~tG~tA~k~lemveg~--lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa--~v~~~sHalSg~eRsis 101 (186)
T COG1751 29 KHIVVA---SSTGYTALKALEMVEGD--LKVVVVTHHAGFEEKGTQEMDEEVRKELKERGA--KVLTQSHALSGVERSIS 101 (186)
T ss_pred ceEEEE---ecccHHHHHHHHhcccC--ceEEEEEeecccccCCceecCHHHHHHHHHcCc--eeeeehhhhhcchhhhh
Confidence 444443 36888888888877643 5676666665443 345666665443 344545433211111 2
Q ss_pred CCeeEEehHHHHHHHHHHHhCCCCc
Q psy17482 320 TKIRCIDVSMMFAEAVRRTHNGESV 344 (353)
Q Consensus 320 ~ki~~lsva~lla~~i~~~~~~~s~ 344 (353)
.|+-=++=-..+||.+|-.-+|--+
T Consensus 102 ~kfGG~~p~eiiAetLR~fg~G~KV 126 (186)
T COG1751 102 RKFGGYSPLEIIAETLRMFGQGVKV 126 (186)
T ss_pred hhcCCcchHHHHHHHHHHhcCCcEE
Confidence 4666667778899999855455443
No 240
>PRK10481 hypothetical protein; Provisional
Probab=21.27 E-value=6.8e+02 Score=23.37 Aligned_cols=75 Identities=11% Similarity=0.079 Sum_probs=47.6
Q ss_pred CCCeEEEecCCCchhhHHHHHHHcCCcEEEEEEeecCCCceEEEEeecCCCCCEEEEEecccCChHHHHHHHHHHHhcCC
Q psy17482 197 WKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGA 276 (353)
Q Consensus 197 ~~~~vvVspd~Gg~~ra~~la~~Lg~~~~~l~K~R~~~~~v~~~~~~gdv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA 276 (353)
.+..-|+.|...-......-...+|.+..+ ....+.+.+-..+.++++.|++.||
T Consensus 129 g~riGVitP~~~qi~~~~~kw~~~G~~v~~-------------------------~~aspy~~~~~~l~~aa~~L~~~ga 183 (224)
T PRK10481 129 GHQVGVIVPVEEQLAQQAQKWQVLQKPPVF-------------------------ALASPYHGSEEELIDAGKELLDQGA 183 (224)
T ss_pred CCeEEEEEeCHHHHHHHHHHHHhcCCceeE-------------------------eecCCCCCCHHHHHHHHHHhhcCCC
Confidence 456788888877666555444444554321 0002223566789999999999999
Q ss_pred CEEEEEEEeccCChhHHHHHhh
Q psy17482 277 TKVYAILTHGIFSGPAINRINN 298 (353)
Q Consensus 277 ~~V~~~~tHglfs~~a~~~l~~ 298 (353)
+-|...|+ |+-. ...+.+++
T Consensus 184 D~Ivl~C~-G~~~-~~~~~le~ 203 (224)
T PRK10481 184 DVIVLDCL-GYHQ-RHRDLLQK 203 (224)
T ss_pred CEEEEeCC-CcCH-HHHHHHHH
Confidence 99988886 4333 44556654
No 241
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.23 E-value=8.5e+02 Score=24.48 Aligned_cols=148 Identities=14% Similarity=0.096 Sum_probs=74.9
Q ss_pred HHHHHHHHHhCCCccCCCccccCCCCceeEEeCCccCCceEEEEecCCCCCchHHHHHHHHHHHHhhhCCCeEEEEeeCC
Q psy17482 24 FFAKQNAEYKGVQRYIPPRLSPEDRGQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPCF 103 (353)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~f~dGE~~v~i~~~vrg~dv~iiqs~~~~~nd~lmeLll~~~a~r~~~a~~i~~viPY~ 103 (353)
-.|-.+|..+|++ .....+..|..-+-+.++-.... .+.+|...+ +- +.- -++.|++....++|++|+=
T Consensus 238 laA~a~a~~~G~~-~~~~~L~~f~~~~~R~e~~~~~~--gv~~idDs~-~t--n~~---a~~~al~~~~~~~ii~IlG-- 306 (401)
T PRK03815 238 LLALAVYKILFDE-LDYERLNAFKIGKHKLEEFRDKQ--GRLWVDDSK-AT--NVD---ATLQALKRYKDKKIHLILG-- 306 (401)
T ss_pred HHHHHHHHHhCcH-HHHHHHHhCCCCCceEEEEEEEC--CEEEEECCC-CC--CHH---HHHHHHHhCCCCCEEEEEC--
Confidence 3456677777832 11223566766666666543333 366676432 22 222 3445665543457888776
Q ss_pred CccccccccCCCCCCCCchhHHHHhhhccccccCCCCcchHHHHHHHHHHcCCCEEEEEcCChhHHhccc---Ccccccc
Q psy17482 104 PYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFF---DIPVDNL 180 (353)
Q Consensus 104 ~YsRqDr~~~~~~~~~~~~~~~~~~~~~~~~kf~~~e~isak~vA~lL~~~g~d~VitvDlHs~~~~~~F---~ip~~~l 180 (353)
| .|+ ++.. ..+++.+..... .|+.+.-+...+...+ +.+....
T Consensus 307 G---~~k----------------------------~~~~--~~l~~~~~~~~~-~v~~~G~~~~~~~~~~~~~~~~~~~~ 352 (401)
T PRK03815 307 G---DDK----------------------------GVDL--TPLFEFMKNLNI-ELYAIGSNTEKIQALAKEFNIKAFVC 352 (401)
T ss_pred C---CCC----------------------------CCCH--HHHHHHHHhhCc-EEEEECCCHHHHHHHHhcCCCeEEEe
Confidence 2 111 1111 256666665555 4888887765553321 2122112
Q ss_pred ccHHHHHHHHHhhCCCCCCeEEEecCCCchhhHHHHH
Q psy17482 181 YAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIA 217 (353)
Q Consensus 181 ~a~~~La~~i~~~~~~~~~~vvVspd~Gg~~ra~~la 217 (353)
.....+.+++.+.. ...+.|++||.--+...-+.+.
T Consensus 353 ~~~e~av~~~~~~~-~~gdvVLlSPa~aSfd~f~ny~ 388 (401)
T PRK03815 353 EFLEKAVEEIKKVL-KQNEVALLSPAAASLDQFKSYK 388 (401)
T ss_pred CCHHHHHHHHHHhC-CCCCEEEeChhhhccccccCHH
Confidence 22344444454433 2346899999766655544443
No 242
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=21.15 E-value=2.1e+02 Score=24.38 Aligned_cols=73 Identities=14% Similarity=0.195 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHhhhCCCeEEEEeeCCC-------ccccccccCCCCCCCCchhHHHHhhhccccccCCCCcchHHHHH
Q psy17482 76 DNLMELLIMINACKIASASRVTAVIPCFP-------YARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVA 148 (353)
Q Consensus 76 d~lmeLll~~~a~r~~~a~~i~~viPY~~-------YsRqDr~~~~~~~~~~~~~~~~~~~~~~~~kf~~~e~isak~vA 148 (353)
...=.|-++++.|++.|++-..+++|-=+ ++++.|. -..+-+.
T Consensus 33 pEy~Dl~l~L~~~k~~g~~~lfVi~PvNg~wydytG~~~~~r~------------------------------~~y~kI~ 82 (130)
T PF04914_consen 33 PEYDDLQLLLDVCKELGIDVLFVIQPVNGKWYDYTGLSKEMRQ------------------------------EYYKKIK 82 (130)
T ss_dssp THHHHHHHHHHHHHHTT-EEEEEE----HHHHHHTT--HHHHH------------------------------HHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCceEEEecCCcHHHHHHhCCCHHHHH------------------------------HHHHHHH
Confidence 46778889999999999998888888444 4433222 1455677
Q ss_pred HHHHHcCCCEEEEEcCChhHHhcccCccccccc
Q psy17482 149 NMLSVAGADHIITMDLHASQIQGFFDIPVDNLY 181 (353)
Q Consensus 149 ~lL~~~g~d~VitvDlHs~~~~~~F~ip~~~l~ 181 (353)
.++.+.|+ =.+|+.+.....+|-....|+-
T Consensus 83 ~~~~~~gf---~v~D~s~~~y~~yfm~D~iHlg 112 (130)
T PF04914_consen 83 YQLKSQGF---NVADFSDDEYEPYFMQDTIHLG 112 (130)
T ss_dssp HHHHTTT-----EEE-TTGTTSTTSBSSSSSB-
T ss_pred HHHHHCCC---EEEecccCCCCCceeeecccCc
Confidence 78888887 4567887777777754444553
No 243
>PRK10637 cysG siroheme synthase; Provisional
Probab=20.80 E-value=2.3e+02 Score=29.10 Aligned_cols=44 Identities=25% Similarity=0.319 Sum_probs=31.9
Q ss_pred EeecCCCCCEEEEEecccCChHHHHHH-HHHHHhcCCCEEEEEEEeccCChhH
Q psy17482 241 VLVGDVKDRVAILVDDMADTCGTICHA-AEKLMEAGATKVYAILTHGIFSGPA 292 (353)
Q Consensus 241 ~~~gdv~Gk~VlIVDDII~TG~Tl~~a-a~~Lk~~GA~~V~~~~tHglfs~~a 292 (353)
.+.-+++||+|+|| .||.+..- ++.|.+.||+ |.+++ +-|+++.
T Consensus 5 P~~~~l~~~~vlvv-----GgG~vA~rk~~~ll~~ga~-v~vis--p~~~~~~ 49 (457)
T PRK10637 5 PIFCQLRDRDCLLV-----GGGDVAERKARLLLDAGAR-LTVNA--LAFIPQF 49 (457)
T ss_pred ceEEEcCCCEEEEE-----CCCHHHHHHHHHHHHCCCE-EEEEc--CCCCHHH
Confidence 34458999999998 78887655 6778888985 66666 4566553
No 244
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=20.75 E-value=1.5e+02 Score=30.14 Aligned_cols=36 Identities=3% Similarity=0.003 Sum_probs=31.5
Q ss_pred cCCCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEE
Q psy17482 244 GDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAIL 283 (353)
Q Consensus 244 gdv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~ 283 (353)
+++.|++++| +-+|+.-..+++.|.+.|+..|+++.
T Consensus 177 ~~l~~kkvlv----iGaG~~a~~va~~L~~~g~~~I~V~n 212 (414)
T PRK13940 177 DNISSKNVLI----IGAGQTGELLFRHVTALAPKQIMLAN 212 (414)
T ss_pred cCccCCEEEE----EcCcHHHHHHHHHHHHcCCCEEEEEC
Confidence 5688999985 56899999999999999999988876
No 245
>PLN02469 hydroxyacylglutathione hydrolase
Probab=20.45 E-value=1.7e+02 Score=27.64 Aligned_cols=53 Identities=21% Similarity=0.197 Sum_probs=34.5
Q ss_pred EeecCCCCCEEEEEecccCChHHHHHHHHHHHhcCCCEEEEEEEeccCCh-hHHHHHhh
Q psy17482 241 VLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSG-PAINRINN 298 (353)
Q Consensus 241 ~~~gdv~Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~-~a~~~l~~ 298 (353)
.+..+-.++.++||| .| ......+.|++.|.+--+++.||+=+.. ++...|.+
T Consensus 15 Yli~d~~~~~~vlID----p~-~~~~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~~ 68 (258)
T PLN02469 15 YLIIDESTKDAAVVD----PV-DPEKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKK 68 (258)
T ss_pred EEEEeCCCCeEEEEC----CC-ChHHHHHHHHHcCCcccEEEecCCCCccccCHHHHHH
Confidence 334444567899998 34 3466677788888777789999986553 23444443
No 246
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=20.42 E-value=3.1e+02 Score=24.90 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=32.5
Q ss_pred EEEecc--cCChHHHHHHHHHHHhcCCCEEEEEEEeccCChhHHHHHh
Q psy17482 252 ILVDDM--ADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRIN 297 (353)
Q Consensus 252 lIVDDI--I~TG~Tl~~aa~~Lk~~GA~~V~~~~tHglfs~~a~~~l~ 297 (353)
.++=|+ .|.|.|....++.+.+.||. .++.|+....+.++.+.
T Consensus 51 ~v~lD~K~~Dig~t~~~~~~~~~~~gad---~vTvh~~~g~~~l~~~~ 95 (213)
T TIGR01740 51 LIFLDLKFADIPNTVKLQYESKIKQGAD---MVNVHGVAGSESVEAAK 95 (213)
T ss_pred CEEEEEeecchHHHHHHHHHHHHhcCCC---EEEEcCCCCHHHHHHHH
Confidence 566788 99999999999998888877 55668766666455443
No 247
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=20.06 E-value=3.2e+02 Score=20.76 Aligned_cols=55 Identities=9% Similarity=0.086 Sum_probs=35.0
Q ss_pred EEEEEecccCChHHHHHHHHHHHhcCC-CEEEEEEEeccCChhHHHHHhhcCCCEEEEe
Q psy17482 250 VAILVDDMADTCGTICHAAEKLMEAGA-TKVYAILTHGIFSGPAINRINNACFEAVVVT 307 (353)
Q Consensus 250 ~VlIVDDII~TG~Tl~~aa~~Lk~~GA-~~V~~~~tHglfs~~a~~~l~~s~id~ii~T 307 (353)
+++|+|--+.. .+..+.++.|++.+. ..+.+++.|. +........+.|++..+..
T Consensus 45 d~iiid~~~~~-~~~~~~~~~i~~~~~~~~ii~~t~~~--~~~~~~~~~~~g~~~~l~k 100 (112)
T PF00072_consen 45 DLIIIDLELPD-GDGLELLEQIRQINPSIPIIVVTDED--DSDEVQEALRAGADDYLSK 100 (112)
T ss_dssp SEEEEESSSSS-SBHHHHHHHHHHHTTTSEEEEEESST--SHHHHHHHHHTTESEEEES
T ss_pred eEEEEEeeecc-ccccccccccccccccccEEEecCCC--CHHHHHHHHHCCCCEEEEC
Confidence 57777766655 566788888888884 3566666443 3333444446788887743
No 248
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=20.03 E-value=4.6e+02 Score=26.59 Aligned_cols=148 Identities=16% Similarity=0.115 Sum_probs=69.5
Q ss_pred CCcchHHHHHHHHHHcCCCEEEEEcCC---hh--HHhcccCccccccccHHHHHHHHHhhCCCCCCeEEEecCCC-chhh
Q psy17482 139 RAPISAKLVANMLSVAGADHIITMDLH---AS--QIQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAG-GAKR 212 (353)
Q Consensus 139 ~e~isak~vA~lL~~~g~d~VitvDlH---s~--~~~~~F~ip~~~l~a~~~La~~i~~~~~~~~~~vvVspd~G-g~~r 212 (353)
..+-.+..++.+++..++-.|-..--. +. ...-+|......-..+..+++.++. . +++...++..+.. |...
T Consensus 125 ~~S~~~~ava~~~~~~~iP~Is~~ats~~ls~~~~~p~~fRt~p~d~~~~~al~~l~~~-~-~W~~Vaii~~~~~yg~~~ 202 (472)
T cd06374 125 GSSSVAIQVQNLLQLFNIPQIAYSATSIDLSDKTLFKYFLRVVPSDTLQARAMLDIVKR-Y-NWTYVSAVHTEGNYGESG 202 (472)
T ss_pred CcchHHHHHHHHhhhhcccccccccCchhhcccccCCceEEcCCChHHHHHHHHHHHHH-C-CCcEEEEEEecchHHHHH
Confidence 334456667777777654433321111 11 1122444322223446667776643 3 5677777776543 4333
Q ss_pred HHH---HHHHcCCcEEEEEEeecCCCceEEEEeecCCC--CCEEEEEecccCChHHHHHHHHHHHhcCCCE-EEEEEEec
Q psy17482 213 VTS---IADRLNVEFALIHKERKKANEVASMVLVGDVK--DRVAILVDDMADTCGTICHAAEKLMEAGATK-VYAILTHG 286 (353)
Q Consensus 213 a~~---la~~Lg~~~~~l~K~R~~~~~v~~~~~~gdv~--Gk~VlIVDDII~TG~Tl~~aa~~Lk~~GA~~-V~~~~tHg 286 (353)
+.. .++..|+.++...+.....+..........++ +.++.+|. +..++.......+.+++.|-.. ...+.+.+
T Consensus 203 ~~~~~~~~~~~gi~i~~~~~i~~~~~~~d~~~~l~~lk~~~~da~vvv-~~~~~~~~~~~l~~a~~~g~~~~~~wi~s~~ 281 (472)
T cd06374 203 MEAFKELAAHEGLCIAHSDKIYSNAGEQSFDRLLRKLRSRLPKARVVV-CFCEGMTVRGLLMAMRRLGVGGEFQLIGSDG 281 (472)
T ss_pred HHHHHHHHHHCCeeEEEEEEecCCCchHHHHHHHHHHHhcCCCcEEEE-EEechHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 443 44444655443333222111110001122333 22333332 3455666777778888888764 34445666
Q ss_pred cCC
Q psy17482 287 IFS 289 (353)
Q Consensus 287 lfs 289 (353)
..+
T Consensus 282 ~~~ 284 (472)
T cd06374 282 WAD 284 (472)
T ss_pred ccc
Confidence 655
Done!