RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17482
(353 letters)
>gnl|CDD|234929 PRK01259, PRK01259, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 309
Score = 408 bits (1051), Expect = e-143
Identities = 159/300 (53%), Positives = 196/300 (65%), Gaps = 26/300 (8%)
Query: 49 GQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPCFPYARQ 108
G+I VEI E+VRG+DV+I+QS NDNLMELLIMI+A K ASA R+TAVIP F YARQ
Sbjct: 35 GEISVEINENVRGKDVFIIQSTCAPTNDNLMELLIMIDALKRASAGRITAVIPYFGYARQ 94
Query: 109 DKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQ 168
D+K RSR PI+AKLVAN+L AGAD ++TMDLHA Q
Sbjct: 95 DRKA------------------------RSRVPITAKLVANLLETAGADRVLTMDLHADQ 130
Query: 169 IQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIH 228
IQGFFDIPVDNLY P +L+ IK+ E N ++VSPD GG R ++A RL+ + A+I
Sbjct: 131 IQGFFDIPVDNLYGSPILLEDIKQKNLE--NLVVVSPDVGGVVRARALAKRLDADLAIID 188
Query: 229 KERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIF 288
K R +AN M ++GDV+ R ILVDDM DT GT+C AAE L E GA VYA TH +
Sbjct: 189 KRRPRANVSEVMNIIGDVEGRDCILVDDMIDTAGTLCKAAEALKERGAKSVYAYATHPVL 248
Query: 289 SGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRRTHNGESVSYLF 348
SG AI RI N+ + +VVT++IP K C KIR + V+ + AEA+RR N ESVS LF
Sbjct: 249 SGGAIERIENSVIDELVVTDSIPLSEEAKKCDKIRVLSVAPLLAEAIRRISNEESVSSLF 308
>gnl|CDD|223538 COG0462, PrsA, Phosphoribosylpyrophosphate synthetase [Nucleotide
transport and metabolism / Amino acid transport and
metabolism].
Length = 314
Score = 406 bits (1047), Expect = e-143
Identities = 157/301 (52%), Positives = 197/301 (65%), Gaps = 27/301 (8%)
Query: 49 GQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPCFPYARQ 108
G+I V I ESVRG+DV+I+QS S VNDNLMELLIMI+A K ASA R+TAVIP F YARQ
Sbjct: 39 GEIYVRIEESVRGKDVFIIQSTSPPVNDNLMELLIMIDALKRASAKRITAVIPYFGYARQ 98
Query: 109 DKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQ 168
DK F+ R PISAKLVAN+L AGAD ++T+DLHA Q
Sbjct: 99 DKA------------------------FKPREPISAKLVANLLETAGADRVLTVDLHAPQ 134
Query: 169 IQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIH 228
IQGFFDIPVDNLYA P + ++I+E + + ++VSPD GG KR ++ADRL A+I
Sbjct: 135 IQGFFDIPVDNLYAAPLLAEYIREKY-DLDDPVVVSPDKGGVKRARALADRLGAPLAIID 193
Query: 229 KER-KKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGI 287
K R N V M L+GDV+ + ++VDD+ DT GTI AA+ L E GA KVYA THG+
Sbjct: 194 KRRDSSPNVVEVMNLIGDVEGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYAAATHGV 253
Query: 288 FSGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRRTHNGESVSYL 347
FSG A+ R+ + + V+VT+TIP K K+ I V+ + AEA+RR HNGESVS L
Sbjct: 254 FSGAALERLEASAIDEVIVTDTIPLPE-KKKIPKVSVISVAPLIAEAIRRIHNGESVSSL 312
Query: 348 F 348
F
Sbjct: 313 F 313
>gnl|CDD|130318 TIGR01251, ribP_PPkin, ribose-phosphate pyrophosphokinase.
Alternate name: phosphoribosylpyrophosphate synthetase
In some systems, close homologs lacking enzymatic
activity exist and perform regulatory functions. The
model is designated subfamily rather than equivalog for
this reason [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 308
Score = 377 bits (971), Expect = e-131
Identities = 161/303 (53%), Positives = 199/303 (65%), Gaps = 31/303 (10%)
Query: 49 GQIGVEIGESVRGEDVYIV-QSGSGEVNDNLMELLIMINACKIASASRVTAVIPCFPYAR 107
G++ V I ESVRG+DV+I+ QS S VNDNLMELLIMI+A K ASA +TAVIP + YAR
Sbjct: 35 GELYVRINESVRGKDVFIIQQSTSAPVNDNLMELLIMIDALKRASAKSITAVIPYYGYAR 94
Query: 108 QDKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHAS 167
QDKK F+SR PISAKLVAN+L AGAD ++T+DLH+
Sbjct: 95 QDKK------------------------FKSREPISAKLVANLLETAGADRVLTVDLHSP 130
Query: 168 QIQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALI 227
QIQGFFD+PVDNLYA P + +++K+ I N ++VSPDAGG +R +AD L A+I
Sbjct: 131 QIQGFFDVPVDNLYASPVLAEYLKKKI--LDNPVVVSPDAGGVERAKKVADALGCPLAII 188
Query: 228 HKERK-KANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHG 286
K R NEV M LVGDV+ + ++VDD+ DT GTI AAE L AGA +V A THG
Sbjct: 189 DKRRISATNEVEVMNLVGDVEGKDVVIVDDIIDTGGTIAKAAEILKSAGAKRVIAAATHG 248
Query: 287 IFSGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRRTHNGESVSY 346
+FSGPAI RI NA E V+VTNTIP + H K+ I V+ + AEA+RR HN ESVS
Sbjct: 249 VFSGPAIERIANAGVEEVIVTNTIPHEKH---KPKVSVISVAPLIAEAIRRIHNNESVSS 305
Query: 347 LFS 349
LF
Sbjct: 306 LFD 308
>gnl|CDD|215209 PLN02369, PLN02369, ribose-phosphate pyrophosphokinase.
Length = 302
Score = 297 bits (763), Expect = e-100
Identities = 128/301 (42%), Positives = 181/301 (60%), Gaps = 26/301 (8%)
Query: 49 GQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPCFPYARQ 108
G+I V++ ESVRG DV++VQ N+NLMELLIMI+AC+ ASA R+TAVIP F YAR
Sbjct: 26 GEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKRITAVIPYFGYARA 85
Query: 109 DKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQ 168
D+K +G R I+AKLVAN+++ AGAD ++ DLH+ Q
Sbjct: 86 DRKTQG------------------------RESIAAKLVANLITEAGADRVLACDLHSGQ 121
Query: 169 IQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRL-NVEFALI 227
G+FDIPVD++Y +P +L ++ + ++VSPD GG R + A +L + A++
Sbjct: 122 SMGYFDIPVDHVYGQPVILDYLASKTISSPDLVVVSPDVGGVARARAFAKKLSDAPLAIV 181
Query: 228 HKERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGI 287
K R+ N M L+GDVK +VAI+VDDM DT GTI A L + GA +VYA TH +
Sbjct: 182 DKRRQGHNVAEVMNLIGDVKGKVAIMVDDMIDTAGTITKGAALLHQEGAREVYACATHAV 241
Query: 288 FSGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRRTHNGESVSYL 347
FS PAI R+++ F+ V+VTNTIP ++ + V+ + E + R H+ SVS +
Sbjct: 242 FSPPAIERLSSGLFQEVIVTNTIPVS-EKNYFPQLTVLSVANLLGETIWRVHDDCSVSSI 300
Query: 348 F 348
F
Sbjct: 301 F 301
>gnl|CDD|179535 PRK03092, PRK03092, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 304
Score = 293 bits (752), Expect = 2e-98
Identities = 131/307 (42%), Positives = 174/307 (56%), Gaps = 29/307 (9%)
Query: 49 GQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPCFPYARQ 108
G+I V ESVRG D +++QS + +N LME LIMI+A K ASA R+T V+P +PYARQ
Sbjct: 24 GEIYVRFEESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRASAKRITVVLPFYPYARQ 83
Query: 109 DKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQ 168
DKK +G R PISA+LVA++ AGAD I+T+DLH +Q
Sbjct: 84 DKKHRG------------------------REPISARLVADLFKTAGADRIMTVDLHTAQ 119
Query: 169 IQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRL-NVEFALI 227
IQGFFD PVD+L+A P + ++++ N +VSPDAG + ADRL A I
Sbjct: 120 IQGFFDGPVDHLFAMPLLADYVRDKYDL-DNVTVVSPDAGRVRVAEQWADRLGGAPLAFI 178
Query: 228 HKER--KKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTH 285
HK R N+V + +VGDV+ R +LVDDM DT GTI A L EAGA V TH
Sbjct: 179 HKTRDPTVPNQVVANRVVGDVEGRTCVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAATH 238
Query: 286 GIFSGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRRTHNGESVS 345
G+ SGPA R+ N VVVT+T+P K K+ + ++ + A A+R SV+
Sbjct: 239 GVLSGPAAERLKNCGAREVVVTDTLPIPEE-KRFDKLTVLSIAPLLARAIREVFEDGSVT 297
Query: 346 YLFSNVP 352
LF +
Sbjct: 298 SLFDGLA 304
>gnl|CDD|235072 PRK02812, PRK02812, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 330
Score = 287 bits (736), Expect = 1e-95
Identities = 138/323 (42%), Positives = 195/323 (60%), Gaps = 39/323 (12%)
Query: 35 VQRYIPPRLSPEDR-----GQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACK 89
V RY+ L P R G++ V+I ES+RG DVY++Q VND+LMELLIM++AC+
Sbjct: 37 VARYLGMDLGPMIRKRFADGELYVQIQESIRGCDVYLIQPTCAPVNDHLMELLIMVDACR 96
Query: 90 IASASRVTAVIPCFPYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVAN 149
ASA ++TAVIP + YAR D+K G R I+AKLVAN
Sbjct: 97 RASARQITAVIPYYGYARADRKTAG------------------------RESITAKLVAN 132
Query: 150 MLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKE-NIPEWKNSIIVSPDAG 208
+++ AGAD ++ MDLH++QIQG+FDIP D++Y P +L ++ N+ + ++VSPD G
Sbjct: 133 LITKAGADRVLAMDLHSAQIQGYFDIPCDHVYGSPVLLDYLASKNLED---IVVVSPDVG 189
Query: 209 GAKRVTSIADRLN-VEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHA 267
G R + A +LN A+I K R+ N + ++GDVK + AILVDDM DT GTIC
Sbjct: 190 GVARARAFAKKLNDAPLAIIDKRRQAHNVAEVLNVIGDVKGKTAILVDDMIDTGGTICEG 249
Query: 268 AEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTNTIP--QDGHMKDCTKIRCI 325
A L + GA +VYA TH +FS PAI R+++ FE V+VTNTIP ++ +++ +
Sbjct: 250 ARLLRKEGAKQVYACATHAVFSPPAIERLSSGLFEEVIVTNTIPVPEERRFP---QLKVL 306
Query: 326 DVSMMFAEAVRRTHNGESVSYLF 348
V+ M EA+ R H SVS +F
Sbjct: 307 SVANMLGEAIWRIHEESSVSSMF 329
>gnl|CDD|179893 PRK04923, PRK04923, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 319
Score = 284 bits (729), Expect = 7e-95
Identities = 135/303 (44%), Positives = 189/303 (62%), Gaps = 29/303 (9%)
Query: 49 GQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPCFPYARQ 108
G++ VEI ESVR ++V+++Q +NLMELL++I+A K ASA+ VTAVIP F Y+RQ
Sbjct: 41 GEVQVEIEESVRRQEVFVIQPTCAPSAENLMELLVLIDALKRASAASVTAVIPYFGYSRQ 100
Query: 109 DKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQ 168
D++ + SR PI+AK+ A M+S GAD ++T+DLHA Q
Sbjct: 101 DRRMRS-----------------------SRVPITAKVAAKMISAMGADRVLTVDLHADQ 137
Query: 169 IQGFFDIPVDNLYAEPAVLK--WIKENIPEWKNSIIVSPDAGGAKRVTSIADRL-NVEFA 225
IQGFFD+PVDN+YA P +L W N I+VSPD GG R ++A RL + + A
Sbjct: 138 IQGFFDVPVDNVYASPLLLADIWRAYGTD---NLIVVSPDVGGVVRARAVAKRLDDADLA 194
Query: 226 LIHKERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTH 285
+I K R +AN M ++GDV+ + +LVDD+ DT GT+C AA L + GA KV A +TH
Sbjct: 195 IIDKRRPRANVATVMNIIGDVQGKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVAYITH 254
Query: 286 GIFSGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRRTHNGESVS 345
+ SGPA++ INN+ + +VVT+TIP + C KIR + V+ + AE +RR GESVS
Sbjct: 255 PVLSGPAVDNINNSQLDELVVTDTIPLSEAARACAKIRQLSVAELLAETIRRIAFGESVS 314
Query: 346 YLF 348
L+
Sbjct: 315 SLY 317
>gnl|CDD|167353 PRK02269, PRK02269, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 320
Score = 282 bits (722), Expect = 9e-94
Identities = 135/304 (44%), Positives = 181/304 (59%), Gaps = 31/304 (10%)
Query: 49 GQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPCFPYARQ 108
G+I V I ES+RG V+I+QS S VNDNLME+LIM++A K ASA + V+P + YARQ
Sbjct: 40 GEIQVNIEESIRGHHVFILQSTSSPVNDNLMEILIMVDALKRASAESINVVMPYYGYARQ 99
Query: 109 DKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQ 168
D+K RSR PI++KLVANML VAG D ++T+DLHA+Q
Sbjct: 100 DRKA------------------------RSREPITSKLVANMLEVAGVDRLLTVDLHAAQ 135
Query: 169 IQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIH 228
IQGFFDIPVD+L P + + + ++VSPD GG R +A L A+I
Sbjct: 136 IQGFFDIPVDHLMGAPLIADYFDRRGLVGDDVVVVSPDHGGVTRARKLAQFLKTPIAIID 195
Query: 229 KERK--KANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHG 286
K R K N M ++G+VK + IL+DDM DT GTICHAA+ L EAGAT+VYA TH
Sbjct: 196 KRRSVDKMNTSEVMNIIGNVKGKKCILIDDMIDTAGTICHAADALAEAGATEVYASCTHP 255
Query: 287 IFSGPAINRINNACFEAVVVTNTI--PQDGHMKDCTKIRCIDVSMMFAEAVRRTHNGESV 344
+ SGPA++ I + E +VV +TI P++ + KI I ++ + EA+ R H +
Sbjct: 256 VLSGPALDNIQKSAIEKLVVLDTIYLPEERLID---KIEQISIADLLGEAIIRIHEKRPL 312
Query: 345 SYLF 348
S LF
Sbjct: 313 SPLF 316
>gnl|CDD|240290 PTZ00145, PTZ00145, phosphoribosylpyrophosphate synthetase;
Provisional.
Length = 439
Score = 268 bits (686), Expect = 1e-86
Identities = 136/313 (43%), Positives = 189/313 (60%), Gaps = 35/313 (11%)
Query: 49 GQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPCFPYARQ 108
G++ ++ ES+RG+DVYI+Q VN+NL+ELL+MI+ C+ ASA ++TAVIP + YARQ
Sbjct: 154 GEVSMQFLESIRGKDVYIIQPTCPPVNENLIELLLMISTCRRASAKKITAVIPYYGYARQ 213
Query: 109 DKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQ 168
D+K SR PISA VA M+ G D ++ +DLH+ Q
Sbjct: 214 DRK------------------------LSSRVPISAADVARMIEAMGVDRVVAIDLHSGQ 249
Query: 169 IQGFFD--IPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLN----- 221
IQGFF +PVDNL A+ L + + +K +IVSPDAGG R D LN
Sbjct: 250 IQGFFGPRVPVDNLEAQLIGLDYFTKK-DLYK-PVIVSPDAGGVYRARKFQDGLNHRGIS 307
Query: 222 -VEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVY 280
A++ K+R K NE+ M LVG+V D I+VDDM DT GT+C AA++L + GA +V+
Sbjct: 308 DCGIAMLIKQRTKPNEIEKMDLVGNVYDSDVIIVDDMIDTSGTLCEAAKQLKKHGARRVF 367
Query: 281 AILTHGIFSGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRRTHN 340
A THG+FSGPAI RI + E VVVT+T+ + ++ C KI + VS++ A+A+RR H
Sbjct: 368 AFATHGLFSGPAIERIEASPLEEVVVTDTVKSNKNIDSCKKITKLSVSVLVADAIRRIHQ 427
Query: 341 GESVSYLFSNVPY 353
ES++ LF NV
Sbjct: 428 KESLNDLF-NVKG 439
>gnl|CDD|235039 PRK02458, PRK02458, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 323
Score = 243 bits (622), Expect = 1e-78
Identities = 118/301 (39%), Positives = 174/301 (57%), Gaps = 27/301 (8%)
Query: 49 GQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPCFPYARQ 108
G+I + I ESVRG+D+YI+QS S VND+L ELLIMI+ACK ASA+ V V+P F YARQ
Sbjct: 44 GEIMINIEESVRGDDIYIIQSTSFPVNDHLWELLIMIDACKRASANTVNVVLPYFGYARQ 103
Query: 109 DKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQ 168
D+ K R PI+AKLVANML AG D ++T+DLHA Q
Sbjct: 104 DRIAK------------------------PREPITAKLVANMLVKAGVDRVLTLDLHAVQ 139
Query: 169 IQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIH 228
+QGFFDIPVDNL+ P K + + ++VSP G KR S+A+ L+ A+I
Sbjct: 140 VQGFFDIPVDNLFTVPLFAKHYCKKGLSGSDVVVVSPKNSGIKRARSLAEYLDAPIAIID 199
Query: 229 KERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIF 288
+ + + +GDV + AIL+DD+ +T T AA+ + GAT++YA+ +HG+F
Sbjct: 200 YAQDDSEREEGYI-IGDVAGKKAILIDDILNTGKTFAEAAKIVEREGATEIYAVASHGLF 258
Query: 289 SGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRRTHNGESVSYLF 348
+G A + NA + ++VT+++ + + + S + A+A+ R H + +S LF
Sbjct: 259 AGGAAEVLENAPIKEILVTDSV--ATKERVPKNVTYLSASELIADAIIRIHERKPLSPLF 316
Query: 349 S 349
+
Sbjct: 317 A 317
>gnl|CDD|179062 PRK00553, PRK00553, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 332
Score = 218 bits (557), Expect = 7e-69
Identities = 113/305 (37%), Positives = 173/305 (56%), Gaps = 30/305 (9%)
Query: 49 GQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPCFPYARQ 108
G+ + ESVR +DV I QS VND+LMELLI I+A K SA +TA++P + YARQ
Sbjct: 44 GETYIRFDESVRNKDVVIFQSTCSPVNDSLMELLIAIDALKRGSAKSITAILPYYGYARQ 103
Query: 109 DKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQ 168
D+K G R PI++KLVA++L+ AG + D+H+ Q
Sbjct: 104 DRKTAG------------------------REPITSKLVADLLTKAGVTRVTLTDIHSDQ 139
Query: 169 IQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIH 228
QGFFDIPVD L L + E + + K+ ++VSPD GG KR IA+ L + A+I
Sbjct: 140 TQGFFDIPVDILRTYHVFLSRVLELLGK-KDLVVVSPDYGGVKRARLIAESLELPLAIID 198
Query: 229 KERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIF 288
K R K N S+ ++G+VK++ ++VDDM DT GT+ AA+ L + A KV + THG+F
Sbjct: 199 KRRPKHNVAESINVLGEVKNKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCVMATHGLF 258
Query: 289 SGPAINRINNACFEAVV----VTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRRTHNGESV 344
+ AI + A + ++ V+N+IPQ + + + +D++ ++ E + NG S+
Sbjct: 259 NKNAIQLFDEAFKKKLIDKLFVSNSIPQT-KFEKKPQFKVVDLAHLYEEVLLCYANGGSI 317
Query: 345 SYLFS 349
S +++
Sbjct: 318 SAIYT 322
>gnl|CDD|234868 PRK00934, PRK00934, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 285
Score = 186 bits (474), Expect = 7e-57
Identities = 84/265 (31%), Positives = 136/265 (51%), Gaps = 29/265 (10%)
Query: 49 GQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPCFPYARQ 108
G++ V I + GEDV I+ + + ++NL+ELL++I+A + A +T VIP YARQ
Sbjct: 34 GELYVRILGEIDGEDVVIISTTYPQ-DENLVELLLLIDALRDEGAKSITLVIPYLGYARQ 92
Query: 109 DKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQ 168
DK+ F+ PISA+ +A ++S D IIT+++H
Sbjct: 93 DKR------------------------FKPGEPISARAIAKIISAYY-DRIITINIHEPS 127
Query: 169 IQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIH 228
I FF IP NL A P + ++I + + + ++++PD G + A+ L E+ +
Sbjct: 128 ILEFFPIPFINLDAAPLIAEYIGDKL---DDPLVLAPDKGALELAKEAAEILGCEYDYLE 184
Query: 229 KERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIF 288
K R EV DVK + ++VDD+ T GT+ A + L E GA KVY H +
Sbjct: 185 KTRISPTEVEIAPKNLDVKGKDVLIVDDIISTGGTMATAIKILKEQGAKKVYVACVHPVL 244
Query: 289 SGPAINRINNACFEAVVVTNTIPQD 313
G AI ++ NA + ++VT+T+ +
Sbjct: 245 VGDAILKLYNAGVDEIIVTDTLESE 269
>gnl|CDD|222383 pfam13793, Pribosyltran_N, N-terminal domain of ribose phosphate
pyrophosphokinase. This family is frequently found
N-terminal to the Pribosyltran, pfam00156.
Length = 117
Score = 152 bits (387), Expect = 4e-46
Identities = 58/107 (54%), Positives = 67/107 (62%), Gaps = 24/107 (22%)
Query: 49 GQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPCFPYARQ 108
G+I V I ESVRG+DV+I+QS VNDNLMELLIMI+A K ASA R+TAVIP F YARQ
Sbjct: 35 GEIYVRIEESVRGKDVFIIQSTCPPVNDNLMELLIMIDALKRASAKRITAVIPYFGYARQ 94
Query: 109 DKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAG 155
D+KDK R PI+AKLVAN+L AG
Sbjct: 95 DRKDK------------------------PREPITAKLVANLLEAAG 117
>gnl|CDD|180714 PRK06827, PRK06827, phosphoribosylpyrophosphate synthetase;
Provisional.
Length = 382
Score = 130 bits (328), Expect = 2e-34
Identities = 90/381 (23%), Positives = 158/381 (41%), Gaps = 66/381 (17%)
Query: 9 SCKEFGT------CKLRKASHFFAKQNAEYKGVQR---YIPPRLSPEDRGQIGVEIGESV 59
SC+E ++R+ ++ +KG R IP + G+ EI ESV
Sbjct: 16 SCRELADKVDEHLVRIRERKENENIESLAFKGYSRESYLIPAKFIRFSNGEAKGEILESV 75
Query: 60 RGEDVYIVQ---------SGSGE-----VNDNLMELLIMINACKIASASRVTAVIPCFPY 105
RG+D+YI+Q + GE +D+ +L I+A + A R+T ++P
Sbjct: 76 RGKDIYILQDVGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKARRITVIMPFLYE 134
Query: 106 ARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLH 165
+RQ K+ + R + L L G D+IIT D H
Sbjct: 135 SRQHKR-------------------------KGRESLDCALALQELEELGVDNIITFDAH 169
Query: 166 ASQIQGFFDIP-VDNLYAEPAVLKWIKENIPE----WKNSIIVSPDAGGAKRVTSIADRL 220
+I+ + +NLY ++K + +N + + +++SPD G R A L
Sbjct: 170 DPRIENAIPLMGFENLYPSYQIIKALLKNEKDLEIDKDHLMVISPDTGAMDRAKYYASVL 229
Query: 221 NVEFALIHKERK-------KANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLME 273
V+ L +K R + VA L DV+ + ++VDDM + G++ AA++L
Sbjct: 230 GVDLGLFYKRRDYSRVVNGRNPIVAHEFLGRDVEGKDVLIVDDMIASGGSMIDAAKELKS 289
Query: 274 AGATKVYAILTHGIFSGPAINRINNA----CFEAVVVTNTIPQDGHMKDCTKIRCIDVSM 329
GA K+ T G F+ + + + A F+ ++ TN + + +D+S
Sbjct: 290 RGAKKIIVAATFGFFTN-GLEKFDKAYEEGYFDRIIGTNLVYHPEELLSKPWYIEVDMSK 348
Query: 330 MFAEAVRRTHNGESVSYLFSN 350
+ A + ++ S+S L
Sbjct: 349 LIARIIDALNHDVSLSKLLDP 369
>gnl|CDD|235960 PRK07199, PRK07199, phosphoribosylpyrophosphate synthetase;
Provisional.
Length = 301
Score = 127 bits (321), Expect = 3e-34
Identities = 79/295 (26%), Positives = 126/295 (42%), Gaps = 45/295 (15%)
Query: 49 GQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPCFPYARQ 108
G+ V + V G V +V S ++ L+ LL A + A RV V P Y RQ
Sbjct: 37 GESYVRLDSPVAGRTVVLVCSLD-RPDEKLLPLLFAAEAARELGARRVGLVAPYLAYMRQ 95
Query: 109 DKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLH--- 165
D F IS + A +LS D ++T+D H
Sbjct: 96 DIA------------------------FHPGEAISQRHFARLLS-GSFDRLVTVDPHLHR 130
Query: 166 ASQIQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFA 225
+ + IP L A PA+ WI+ ++P +++ PD + V ++A+R A
Sbjct: 131 YPSLSEVYPIPAVVLSAAPAIAAWIRAHVPRP---LLIGPDEESEQWVAAVAERAGAPHA 187
Query: 226 LIHKERKKANEVASMVLVGDV---KDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAI 282
++ K R +V + + D R +LVDD+ T T+ AA +L AGA +
Sbjct: 188 VLRKTRHGDRDVE--ISLPDAAPWAGRTPVLVDDIVSTGRTLIEAARQLRAAGAASPDCV 245
Query: 283 LTHGIFSGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRR 337
+ H +F+G A + + A VV T+T+P H + I ++ + AEA+RR
Sbjct: 246 VVHALFAGDAYSALAAAGIARVVSTDTVP---HPSN-----AISLAPLLAEALRR 292
>gnl|CDD|206754 cd06223, PRTases_typeI, Phosphoribosyl transferase (PRT)-type I
domain. Phosphoribosyl transferase (PRT) domain. The
type I PRTases are identified by a conserved PRPP
binding motif which features two adjacent acidic
residues surrounded by one or more hydrophobic residue.
PRTases catalyze the displacement of the
alpha-1'-pyrophosphate of
5-phosphoribosyl-alpha1-pyrpphosphate (PRPP) by a
nitrogen-containing nucleophile. The reaction products
are an alpha-1 substituted ribose-5'-phosphate and a
free pyrophosphate (PP). PRPP, an activated form of
ribose-5-phosphate, is a key metabolite connecting
nucleotide synthesis and salvage pathways. The type I
PRTase family includes a range of diverse phosphoribosyl
transferase enzymes and regulatory proteins of the
nucleotide synthesis and salvage pathways, including
adenine phosphoribosyltransferase EC:2.4.2.7.,
hypoxanthine-guanine-xanthine phosphoribosyltransferase,
hypoxanthine phosphoribosyltransferase EC:2.4.2.8.,
ribose-phosphate pyrophosphokinase EC:2.7.6.1.,
amidophosphoribosyltransferase EC:2.4.2.14., orotate
phosphoribosyltransferase EC:2.4.2.10., uracil
phosphoribosyltransferase EC:2.4.2.9., and
xanthine-guanine phosphoribosyltransferase EC:2.4.2.22.
Length = 130
Score = 99.0 bits (247), Expect = 2e-25
Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 10/134 (7%)
Query: 182 AEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASM- 240
A + + I+E++ + ++V GG ++A L + A I KERK S
Sbjct: 1 AGRLLAEEIREDL--LEPDVVVGILRGGLPLAAALARALGLPLAFIRKERKGPGRTPSEP 58
Query: 241 -----VLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINR 295
L GDVK + +LVDD+ T GT+ A E L EAGA V + G A R
Sbjct: 59 YGLELPLGGDVKGKRVLLVDDVIATGGTLLAAIELLKEAGAKVVGVAVLLDKPEGGA--R 116
Query: 296 INNACFEAVVVTNT 309
+ + V T
Sbjct: 117 ELASPGDPVYSLFT 130
>gnl|CDD|215757 pfam00156, Pribosyltran, Phosphoribosyl transferase domain. This
family includes a range of diverse phosphoribosyl
transferase enzymes. This family includes: Adenine
phosphoribosyltransferase EC:2.4.2.7.
Hypoxanthine-guanine-xanthine phosphoribosyltransferase.
Hypoxanthine phosphoribosyltransferase EC:2.4.2.8.
Ribose-phosphate pyrophosphokinase i EC:2.7.6.1.
Amidophosphoribosyltransferase EC:2.4.2.14. Orotate
phosphoribosyltransferase EC:2.4.2.10. Uracil
phosphoribosyltransferase EC:2.4.2.9. Xanthine-guanine
phosphoribosyltransferase EC:2.4.2.22. In Arabidopsis,
At the very N-terminus of this domain is the P-Loop
NTPase domain.
Length = 123
Score = 56.2 bits (136), Expect = 6e-10
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
Query: 185 AVLKWIKENIPE--WKNSIIVSPDAGGAKRVTSIADRLNVEFALI---------HKERKK 233
+++ + E I E +IV GG T++A L + L+ K R
Sbjct: 12 ELIEALAEKIREEGIDPDVIVGIARGGIPLATALARELGIPLVLVRKSRSYPSSIKSRGG 71
Query: 234 ANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTH 285
+ L +K + ++VDD+ DT GT+ A E L +AGA V +
Sbjct: 72 ESVTLLSRLPELLKGKRVLIVDDVLDTGGTLRAAVELLKKAGAKVVGVAVLV 123
>gnl|CDD|177934 PLN02297, PLN02297, ribose-phosphate pyrophosphokinase.
Length = 326
Score = 54.7 bits (132), Expect = 2e-08
Identities = 45/179 (25%), Positives = 85/179 (47%), Gaps = 15/179 (8%)
Query: 144 AKLVANM-LSVAGADHIITMDLHASQIQGFFDIPVDNLYAE--PAVLKWIKENIPEWKNS 200
A++++N+ +S G ++ D+HA Q + +F V + P + K +++ +P+ N
Sbjct: 127 ARILSNIPISRGGPTSLVIFDIHALQERFYFGDNVLPCFESGIPLLKKRLQQ-LPDSDNI 185
Query: 201 IIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLV-GDVKDRVAILVDDMAD 259
+I PD G KR + + + K R+ + + + G+ R ++VDD+
Sbjct: 186 VIAFPDDGAWKRFHKQFE--HFPMVVCTKVRE--GDKRIVRIKEGNPAGRHVVIVDDLVQ 241
Query: 260 TCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINN------ACFEAVVVTNTIPQ 312
+ GT+ + L GA KV A +THG+F + R + A F +T++ PQ
Sbjct: 242 SGGTLIECQKVLAAHGAAKVSAYVTHGVFPNESWERFTHDNGGPEAGFAYFWITDSCPQ 300
>gnl|CDD|223577 COG0503, Apt, Adenine/guanine phosphoribosyltransferases and
related PRPP-binding proteins [Nucleotide transport and
metabolism].
Length = 179
Score = 42.3 bits (100), Expect = 9e-05
Identities = 35/130 (26%), Positives = 50/130 (38%), Gaps = 23/130 (17%)
Query: 172 FFDIP----VDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALI 227
F DI L ++ + E + IV+ +A G ++A L V F +
Sbjct: 25 FVDITLLLGDPELL--AKLIDELAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVPV 82
Query: 228 HKERKKANEVASM------------VLVGDVK--DRVAILVDDMADTCGTICHAAEKLME 273
K+ K E + +K DRV I VDD+ T GT A +L+E
Sbjct: 83 RKKGKLPEESVVETYYLEYGSETLELHKDALKPGDRVLI-VDDLLATGGTA-LALIELLE 140
Query: 274 -AGATKVYAI 282
AGA V A
Sbjct: 141 QAGAEVVGAA 150
>gnl|CDD|180928 PRK07322, PRK07322, adenine phosphoribosyltransferase; Provisional.
Length = 178
Score = 40.7 bits (96), Expect = 3e-04
Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 24/108 (22%)
Query: 201 IIVSPDAGGAKRVTSIADRLNVEFALIHKERKK------ANEVASM------VLVGDVKD 248
++V+P+ G +++ RL + + K RK EV S+ +LV D D
Sbjct: 55 VLVTPETKGIPLAHALSRRLGKPYVVARKSRKPYMQDPIIQEVVSITTGKPQLLVLDGAD 114
Query: 249 -------RVAILVDDMADTCGTICHAAEKLME-AGAT--KVYAILTHG 286
RVAI VDD+ T GT+ A E+L+E AG AI G
Sbjct: 115 AEKLKGKRVAI-VDDVVSTGGTL-TALERLVERAGGQVVAKAAIFAEG 160
>gnl|CDD|223537 COG0461, PyrE, Orotate phosphoribosyltransferase [Nucleotide
transport and metabolism].
Length = 201
Score = 39.5 bits (93), Expect = 9e-04
Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 12/124 (9%)
Query: 172 FFDIPVDNLYAEPAVLKWIK----ENIPEWKN-SIIVSPDAGGAKRVTSIADRLNVE--F 224
+ D+ + E +L+ I E I E ++ P GG + A L
Sbjct: 32 YVDLRLFLTGPE--LLQLIAFALAEIIKEALEFDVVAGPALGGIPLAAATALALAHLPPM 89
Query: 225 ALIHKERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGAT--KVYAI 282
A + KE K ++ G+VK ++V+D+ T G+I A E L EAGA V I
Sbjct: 90 AYVRKEAKDHGTGG-LIEGGEVKGEKVVVVEDVITTGGSILEAVEALREAGAEVVGVAVI 148
Query: 283 LTHG 286
+
Sbjct: 149 VDRQ 152
>gnl|CDD|223970 COG1040, ComFC, Predicted amidophosphoribosyltransferases [General
function prediction only].
Length = 225
Score = 39.7 bits (93), Expect = 0.001
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 229 KERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAI 282
ER++ + A + G + + +LVDD+ T T+ AA+ L EAGA +V+ +
Sbjct: 165 LERRRNLKGAFRLKKGIEEPKNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVL 218
>gnl|CDD|237518 PRK13811, PRK13811, orotate phosphoribosyltransferase; Provisional.
Length = 170
Score = 36.7 bits (85), Expect = 0.006
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 9/116 (7%)
Query: 166 ASQIQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDA-GGAKRVTSIADRLNVEF 224
AS + + I + PA+LK I + + + +V+ A GG +++ +
Sbjct: 23 ASGAKSRYYIDIKTAITHPALLKEIAAEVAKRYDFDVVAGVAVGGVPLAVAVSLAAGKPY 82
Query: 225 ALIHKERK---KANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGAT 277
A+I KE K KA +++GDVK + +LV+D+ + G+ + E+L AGA
Sbjct: 83 AIIRKEAKDHGKAG-----LIIGDVKGKRVLLVEDVTTSGGSALYGIEQLRAAGAV 133
>gnl|CDD|234653 PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.
Length = 209
Score = 37.0 bits (87), Expect = 0.006
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 242 LVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAI 282
L D+ +R I+VD M T G+ A + L + GA + +
Sbjct: 118 LPEDIDERTVIVVDPMLATGGSAIAAIDLLKKRGAKNIKVL 158
>gnl|CDD|181675 PRK09162, PRK09162, hypoxanthine-guanine phosphoribosyltransferase;
Provisional.
Length = 181
Score = 36.0 bits (84), Expect = 0.012
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 245 DVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVY-AILTH 285
+K R ++VDD+ D T+ ++ +E GA +VY A+L
Sbjct: 94 SLKGRTVLVVDDILDEGHTLAAIRDRCLEMGAAEVYSAVLVD 135
>gnl|CDD|215132 PLN02238, PLN02238, hypoxanthine phosphoribosyltransferase.
Length = 189
Score = 34.6 bits (80), Expect = 0.037
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 236 EVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKV 279
+V+ L DVK + +LV+D+ DT T+ L GA V
Sbjct: 85 KVSGADLKIDVKGKHVLLVEDIVDTGNTLSALVAHLEAKGAASV 128
>gnl|CDD|130163 TIGR01091, upp, uracil phosphoribosyltransferase. A fairly deep
split in phylogenetic and UPGMA trees separates this
mostly prokaryotic set of uracil
phosphoribosyltransferases from a mostly eukaryotic set
that includes uracil phosphoribosyltransferase, uridine
kinases, and other, uncharacterized proteins [Purines,
pyrimidines, nucleosides, and nucleotides, Salvage of
nucleosides and nucleotides].
Length = 207
Score = 33.8 bits (78), Expect = 0.090
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 242 LVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGP-AINRINNA 299
L D+ +R I++D M T GT+ A + L + GA K+ + I + P I + A
Sbjct: 116 LPEDIDERTVIVLDPMLATGGTMIAALDLLKKRGAKKIKVL---SIVAAPEGIEAVEKA 171
>gnl|CDD|232871 TIGR00201, comF, comF family protein. This protein is found in
species that do (Bacillus subtilis, Haemophilus
influenzae) or do not (E. coli, Borrelia burgdorferi)
have described systems for natural transformation with
exogenous DNA. It is involved in competence for
transformation in Bacillus subtilis [Cellular processes,
DNA transformation].
Length = 190
Score = 33.3 bits (76), Expect = 0.097
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 229 KERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKV 279
R E A + + R +LVDD+ T T+ A L+E GA V
Sbjct: 133 TLRFLNLENAFDLKNNSFQGRNIVLVDDVVTTGATLHEIARLLLELGAASV 183
>gnl|CDD|234771 PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.
Length = 202
Score = 33.2 bits (77), Expect = 0.13
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 190 IKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDR 249
IK++ E+ ++ P GG ++A L++ + KE K E + R
Sbjct: 58 IKDSGIEFD--VVAGPATGGIPLAAAVARALDLPAIFVRKEAKDHGEGGQIEGRRLFGKR 115
Query: 250 VAILVDDMADTCGTICHAAEKLMEAGAT 277
V ++V+D+ T G++ A E + AGA
Sbjct: 116 V-LVVEDVITTGGSVLEAVEAIRAAGAE 142
>gnl|CDD|177930 PLN02293, PLN02293, adenine phosphoribosyltransferase.
Length = 187
Score = 32.0 bits (73), Expect = 0.30
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 15/76 (19%)
Query: 215 SIADRLNVEFALIHKERKKANEVAS------------MVLVGDVK--DRVAILVDDMADT 260
IA + +F + K K EV S + VG V+ +R +++DD+ T
Sbjct: 79 PIALAIGAKFVPLRKPGKLPGEVISEEYVLEYGTDCLEMHVGAVEPGERA-LVIDDLIAT 137
Query: 261 CGTICHAAEKLMEAGA 276
GT+C A L AGA
Sbjct: 138 GGTLCAAINLLERAGA 153
>gnl|CDD|223707 COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase
[Nucleotide transport and metabolism].
Length = 178
Score = 31.3 bits (72), Expect = 0.44
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 242 LVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAI 282
L D+K R ++V+D+ D+ T+ + L E GA V
Sbjct: 87 LDEDIKGRDVLIVEDIIDSGLTLSKVRDLLKERGAKSVRIA 127
>gnl|CDD|129436 TIGR00336, pyrE, orotate phosphoribosyltransferase. Orotate
phosphoribosyltransferase (OPRTase) is involved in the
biosynthesis of pyrimidine nucleotides.
Alpha-D-ribosyldiphosphate 5-phosphate (PRPP) and
orotate are utilized to form pyrophosphate and orotidine
5'-monophosphate (OMP) in the presence of divalent
cations, preferably Mg2+. In a number of eukaryotes,
this protein is fused to a domain that catalyses the
reaction (EC 4.1.1.23). The combined activity of EC
2.4.2.10 and EC 4.1.1.23 is termed uridine
5'-monophosphate synthase. The conserved Lys (K) residue
at position 101 of the seed alignment has been proposed
as the active site for the enzyme [Purines, pyrimidines,
nucleosides, and nucleotides, Pyrimidine ribonucleotide
biosynthesis].
Length = 173
Score = 31.2 bits (71), Expect = 0.51
Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 15/131 (11%)
Query: 172 FFDIPVDNLYAEPAVL--KWIKENIPE-WKNSIIVSPDAGGAKRVTSIADRLN-----VE 223
+F+I + N E A L ++ I + +I P GG T+++ +L +
Sbjct: 25 YFNIKLFNTGPELANLIARYAAAIIKSHLEFDVIAGPALGGIPIATAVSVKLAKPGGDIP 84
Query: 224 FALIHKERKKANEVASMVLVGDVK--DRVAILVDDMADTCGTICHAAEKLMEAGAT--KV 279
KE K E + G++ D+V + V+D+ T +I A E + AG V
Sbjct: 85 LCFNRKEAKDHGE--GGNIEGELLEGDKVVV-VEDVITTGTSILEAVEIIQAAGGQVAGV 141
Query: 280 YAILTHGIFSG 290
+ S
Sbjct: 142 IIAVDRQERSA 152
>gnl|CDD|193444 pfam12971, NAGLU_N, Alpha-N-acetylglucosaminidase (NAGLU)
N-terminal domain. Alpha-N-acetylglucosaminidase, a
lysosomal enzyme required for the stepwise degradation
of heparan sulfate. Mutations on the
alpha-N-acetylglucosaminidase (NAGLU) gene can lead to
Mucopolysaccharidosis type IIIB (MPS IIIB; or
Sanfilippo syndrome type B) characterized by
neurological dysfunction but relatively mild somatic
manifestations. The structure shows that the enzyme is
composed of three domains. This N-terminal domain has
an alpha-beta fold.
Length = 85
Score = 29.5 bits (67), Expect = 0.66
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 42 RLSPEDRGQIGVEIGESVRGEDVYIVQSGSGEV 74
RL PE GQ E+ ES G D + + G+V
Sbjct: 11 RLLPEHAGQFRFEVIESSDGLDCFEISGDGGKV 43
>gnl|CDD|239783 cd04250, AAK_NAGK-C, AAK_NAGK-C: N-Acetyl-L-glutamate kinase -
cyclic (NAGK-C) catalyzes the phosphorylation of the
gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in
the second step of arginine biosynthesis found in some
bacteria and photosynthetic organisms using the
non-acetylated, cyclic route of ornithine biosynthesis.
In this pathway, glutamate is first N-acetylated and
then phosphorylated by NAGK to give phosphoryl NAG,
which is converted to NAG-ornithine. There are two
variants of this pathway. In one, typified by the
pathway in Thermotoga maritima and Pseudomonas
aeruginosa, the acetyl group is recycled by reversible
transacetylation from acetylornithine to glutamate. The
phosphorylation of NAG by NAGK is feedback inhibited by
arginine. In photosynthetic organisms, NAGK is the
target of the nitrogen-signaling protein PII. Hexameric
formation of NAGK domains appears to be essential to
both arginine inhibition and NAGK-PII complex formation.
NAGK-C are members of the Amino Acid Kinase Superfamily
(AAK).
Length = 279
Score = 30.9 bits (71), Expect = 0.81
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 199 NSIIVSPDAGGAKRVTSIADRLNVEFALIHKER---KKANEVASMVLVGDV-KDRVAIL 253
N ++V GG + + +L +E ++ R ++ E+ MVLVG V K+ V+++
Sbjct: 48 NPVVVH---GGGPEINEMLKKLGIESEFVNGLRVTDEETMEIVEMVLVGKVNKEIVSLI 103
>gnl|CDD|225090 COG2179, COG2179, Predicted hydrolase of the HAD superfamily
[General function prediction only].
Length = 175
Score = 30.4 bits (69), Expect = 0.81
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 175 IPVDNLYAEPAVLKWI---KENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKER 231
+P DN A P + W+ KE + ++VS RV A++L V F I++ +
Sbjct: 40 VPWDNPDATPELRAWLAELKEAGIKV---VVVS--NNKESRVARAAEKLGVPF--IYRAK 92
Query: 232 K 232
K
Sbjct: 93 K 93
>gnl|CDD|224241 COG1322, COG1322, Predicted nuclease of restriction
endonuclease-like fold, RmuC family [General function
prediction only].
Length = 448
Score = 30.8 bits (70), Expect = 0.98
Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 26/149 (17%)
Query: 151 LSVAGADHIITMDLHASQIQGFFDIPVDNL-YA------EPAVLKWIKENIPEW------ 197
A +H+ ++ H I+ + P + + E A + I N PE
Sbjct: 265 REKALKEHLASLKNHIRDIRKKYLKPPETTDFVLMFLPTEGAFAEAI-RNPPELDQEARE 323
Query: 198 KNSIIVSPDAGGAKRVTSIADRLNVEFALIHKER--KKANEVASMVLVGDVKDRVAILVD 255
KN ++VSP T++ LN ER K A E+A VG + D D
Sbjct: 324 KNVVLVSP--------TTLMALLNTIANGWKTERQEKNAKEIAE--EVGKLYDEFGKFAD 373
Query: 256 DMADTCGTICHAAEKLMEAGATKVYAILT 284
+ + A + +A + +
Sbjct: 374 RLEKLGKHLQQAVKSYDQALNSLTSGVGR 402
>gnl|CDD|234409 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate biosynthesis protein
SbnA. Members of this family include SbnA, a protein of
the staphyloferrin B biosynthesis operon of
Staphylococcus aureus. SbnA and SbnB together appear to
synthesize 2,3-diaminopropionate, a precursor of certain
siderophores and other secondary metabolites. SbnA is a
pyridoxal phosphate-dependent enzyme [Cellular
processes, Biosynthesis of natural products].
Length = 304
Score = 30.6 bits (70), Expect = 1.0
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 258 ADTCGTICHAAEKLMEAG-ATKVYAILTHG--IFSGPAINR 295
T GT+ + +L E G TKV A+ G IF GP R
Sbjct: 174 VSTTGTLMGCSRRLRERGPNTKVIAVDAVGSVIFGGPPGRR 214
>gnl|CDD|223925 COG0856, COG0856, Orotate phosphoribosyltransferase homologs
[Nucleotide transport and metabolism].
Length = 203
Score = 29.7 bits (67), Expect = 1.5
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 201 IIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLV-----GDVKDRVAILVD 255
++V G T +A L E A+ H + + +E A V+ + ++VD
Sbjct: 89 VVVGIAISGVPLATMVAYELGKELAIYHPRKHRKDEGAGKGGSISSNFASVEGKRCVIVD 148
Query: 256 DMADTCGTICHAAEKLMEAGATKV 279
D+ T TI E+L E G V
Sbjct: 149 DVITTGSTIKETIEQLKEEGGKPV 172
>gnl|CDD|223113 COG0035, Upp, Uracil phosphoribosyltransferase [Nucleotide
transport and metabolism].
Length = 210
Score = 29.8 bits (68), Expect = 1.5
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 245 DVKDRVAILVDDMADTCGTICHAAEKLMEAG-ATKVYAILTHGIFSGPAINRINNA 299
D+ +R I++D M T G+ A + L + G + + + + I + A
Sbjct: 121 DIDERTVIVLDPMLATGGSAIAAIDLLKKRGGPKNIKVV--SLVAAPEGIKAVEKA 174
>gnl|CDD|239771 cd04238, AAK_NAGK-like, AAK_NAGK-like: N-Acetyl-L-glutamate kinase
(NAGK)-like . Included in this CD are the Escherichia
coli and Pseudomonas aeruginosa type NAGKs which
catalyze the phosphorylation of N-acetyl-L-glutamate
(NAG) by ATP in the second step of arginine biosynthesis
found in bacteria and photosynthetic organisms using
either the acetylated, noncyclic (NC), or
non-acetylated, cyclic (C) route of ornithine
biosynthesis. Also included in this CD is a distinct
group of uncharacterized (UC) bacterial and archeal
NAGKs. Members of this CD belong to the Amino Acid
Kinase Superfamily (AAK).
Length = 256
Score = 30.2 bits (69), Expect = 1.6
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 13/80 (16%)
Query: 178 DNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKER---KKA 234
+ + +LK + N +IV GG + + RL +E ++ R K+
Sbjct: 17 EAFADDIVLLKQVGINP------VIVH---GGGPEINELLKRLGIESEFVNGLRVTDKET 67
Query: 235 NEVASMVLVGDV-KDRVAIL 253
E+ MVL G V K+ V++L
Sbjct: 68 MEIVEMVLAGKVNKELVSLL 87
>gnl|CDD|235028 PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.
Length = 175
Score = 29.7 bits (68), Expect = 1.7
Identities = 33/113 (29%), Positives = 45/113 (39%), Gaps = 27/113 (23%)
Query: 190 IKENIPEWKNSIIVSPDA-----GGAKRVTSIADRLNVEFALIHKERKKANEVASM---- 240
+ E + IV +A G A +A +L + F + K K E S
Sbjct: 43 LVERYKDADIDKIVGIEARGFIFGAA-----LAYKLGIGFVPVRKPGKLPRETISESYEL 97
Query: 241 --------VLVGDVK--DRVAILVDDMADTCGTICHAAEKLME-AGATKVYAI 282
+ +K DRV I VDD+ T GT+ AA KL+E GA V A
Sbjct: 98 EYGTDTLEIHKDAIKPGDRVLI-VDDLLATGGTL-EAAIKLLERLGAEVVGAA 148
>gnl|CDD|235023 PRK02277, PRK02277, orotate phosphoribosyltransferase-like protein;
Provisional.
Length = 200
Score = 29.1 bits (66), Expect = 2.6
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 214 TSIADRLNVEFALIHKERKKANEVASMVLV-----GDVKDRVAILVDDMADTCGTICHAA 268
T +AD L + A+ H ++ E V+ + ++VDD+ + T+
Sbjct: 101 TLVADELGKDLAIYHPKKWDHGEGEKKTGSFSRNFASVEGKRCVIVDDVITSGTTMKETI 160
Query: 269 EKLMEAGATKV 279
E L E G V
Sbjct: 161 EYLKEHGGKPV 171
>gnl|CDD|233245 TIGR01042, V-ATPase_V1_A, V-type (H+)-ATPase V1, A subunit. This
models eukaryotic vacuolar (H+)-ATPase that is
responsible for acidifying cellular compartments. This
enzyme shares extensive sequence similarity with
archaeal ATP synthase [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 591
Score = 29.3 bits (66), Expect = 3.7
Identities = 33/139 (23%), Positives = 56/139 (40%), Gaps = 35/139 (25%)
Query: 32 YKGVQR------------YIP-----PRLSPEDRGQI---GVEIGESVRGEDVYIVQSGS 71
+ G+QR YIP P L + + + + +G+ + G D+Y
Sbjct: 83 FDGIQRPLKAIAEQSQSIYIPRGVNVPALDRDKKWEFTPKKLRVGDHITGGDIY------ 136
Query: 72 GEVNDN-LMELLIMINACKIASASRVTAVIPCFPYARQDKKDKGNGNGKKEADEREMIKK 130
G V +N L++ IM+ + +T + P Y D + G K+ + M+
Sbjct: 137 GTVFENSLIKHKIMLPP---RARGTITYIAPAGNYTVDDTVLEVEFQGVKK--KFSML-- 189
Query: 131 NNEWKFRSRAPISAKLVAN 149
W RS P++ KL AN
Sbjct: 190 -QTWPVRSPRPVTEKLPAN 207
>gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional.
Length = 361
Score = 28.8 bits (64), Expect = 5.3
Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 12/65 (18%)
Query: 22 SHFFAKQNAEYKGVQRYIPPRLSPEDRGQIG------VEIG------ESVRGEDVYIVQS 69
+F G++ + PR SP D + VE G VR EDV +V
Sbjct: 283 GDYFGHNTGHAIGIEVHEDPRFSPRDTTTLQPGMLLTVEPGIYLPGQGGVRIEDVVLVTP 342
Query: 70 GSGEV 74
EV
Sbjct: 343 QGAEV 347
>gnl|CDD|224837 COG1926, COG1926, Predicted phosphoribosyltransferases [General
function prediction only].
Length = 220
Score = 28.0 bits (63), Expect = 5.7
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 225 ALIHKERKKANEVASMVLVG----DVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVY 280
A +ERK+ G +K R ILVDD T T+ A L G ++
Sbjct: 97 AAAARERKELLRRREAYRGGRPVPSLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIV 156
Query: 281 A 281
Sbjct: 157 I 157
>gnl|CDD|199863 cd06239, M14-like_1_2, Peptidase M14-like domain; uncharacterized
subgroup. Peptidase M14-like domain of a functionally
uncharacterized subgroup of the M14 family of
metallocarboxypeptidases (MCPs). The M14 family are
zinc-binding carboxypeptidases (CPs) which hydrolyze
single, C-terminal amino acids from polypeptide chains,
and have a recognition site for the free C-terminal
carboxyl group, which is a key determinant of
specificity. Two major subfamilies of the M14 family,
defined based on sequence and structural homology, are
the A/B and N/E subfamilies. Enzymes belonging to the
A/B subfamily are normally synthesized as inactive
precursors containing preceding signal peptide,
followed by an N-terminal pro-region linked to the
enzyme; these proenzymes are called
procarboxypeptidases. The A/B enzymes can be further
divided based on their substrate specificity;
Carboxypeptidase A-like (CPA-like) enzymes favor
hydrophobic residues while carboxypeptidase B-like
(CPB-like) enzymes only cleave the basic residues
lysine or arginine. The A forms have slightly different
specificities, with Carboxypeptidase A1 (CPA1)
preferring aliphatic and small aromatic residues, and
CPA2 preferring the bulky aromatic side chains. Enzymes
belonging to the N/E subfamily enzymes are not produced
as inactive precursors and instead rely on their
substrate specificity and subcellular
compartmentalization to prevent inappropriate cleavage.
They contain an extra C-terminal transthyretin-like
domain, thought to be involved in folding or formation
of oligomers. MCPs can also be classified based on
their involvement in specific physiological processes;
the pancreatic MCPs participate only in alimentary
digestion and include carboxypeptidase A and B (A/B
subfamily), while others, namely regulatory MCPs or the
N/E subfamily, are involved in more selective
reactions, mainly in non-digestive tissues and fluids,
acting on blood coagulation/fibrinolysis, inflammation
and local anaphylaxis, pro-hormone and neuropeptide
processing, cellular response and others. Another MCP
subfamily, is that of succinylglutamate desuccinylase
/aspartoacylase, which hydrolyzes N-acetyl-L-aspartate
(NAA), and deficiency in which is the established cause
of Canavan disease. Another subfamily (referred to as
subfamily C) includes an exceptional type of activity
in the MCP family, that of dipeptidyl-peptidase
activity of gamma-glutamyl-(L)-meso-diaminopimelate
peptidase I which is involved in bacterial cell wall
metabolism.
Length = 231
Score = 28.0 bits (63), Expect = 6.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 54 EIGESVRGEDVYIVQSGSGEV 74
IG+SV G +Y V+ G+G
Sbjct: 14 VIGQSVEGRPIYSVKFGTGPR 34
>gnl|CDD|227193 COG4856, COG4856, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 403
Score = 27.8 bits (62), Expect = 9.0
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 52 GVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIP 101
GV I S+ + GS +V DNL E+ ++ KI+ + T +P
Sbjct: 247 GVSI-SSITPSKNTVTIVGSQDVLDNLSEIDAPVDLSKISKDTTKTVKLP 295
>gnl|CDD|131580 TIGR02528, EutP, ethanolamine utilization protein, EutP. This
protein is found within operons which code for
polyhedral organelles containing the enzyme ethanolamine
ammonia lyase. The function of this gene is unknown,
although the presence of an N-terminal GxxGxGK motif
implies a GTP-binding site [Energy metabolism, Amino
acids and amines].
Length = 142
Score = 27.0 bits (60), Expect = 9.3
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 225 ALIHKERKKANEVASMVLVGDVKDRVAILVD-DMADTCGTICHAAEKLMEAGATKVYAIL 283
AL+ + VK + ++ D+A+ I A E L AGA ++ I
Sbjct: 67 ALVQSATDPESRFPPGFASIFVKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEIS 126
Query: 284 TH 285
+
Sbjct: 127 SV 128
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.395
Gapped
Lambda K H
0.267 0.0888 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,625,996
Number of extensions: 1689828
Number of successful extensions: 1644
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1586
Number of HSP's successfully gapped: 60
Length of query: 353
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 255
Effective length of database: 6,590,910
Effective search space: 1680682050
Effective search space used: 1680682050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.2 bits)