RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17482
(353 letters)
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis,
transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A
2h06_A 2h07_A 2h08_A
Length = 326
Score = 518 bits (1337), Expect = 0.0
Identities = 248/304 (81%), Positives = 265/304 (87%), Gaps = 24/304 (7%)
Query: 49 GQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPCFPYARQ 108
+ VEIGESVRGEDVYIVQSG GE+NDNLMELLIMINACKIASASRVTAVIPCFPYARQ
Sbjct: 38 QETCVEIGESVRGEDVYIVQSGCGEINDNLMELLIMINACKIASASRVTAVIPCFPYARQ 97
Query: 109 DKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQ 168
DKKD +SRAPISAKLVANMLSVAGADHIITMDLHASQ
Sbjct: 98 DKKD------------------------KSRAPISAKLVANMLSVAGADHIITMDLHASQ 133
Query: 169 IQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIH 228
IQGFFDIPVDNLYAEPAVLKWI+ENI EW+N IVSPDAGGAKRVTSIADRLNV+FALIH
Sbjct: 134 IQGFFDIPVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNVDFALIH 193
Query: 229 KERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIF 288
KERKKANEV MVLVGDVKDRVAILVDDMADTCGTICHAA+KL+ AGAT+VYAILTHGIF
Sbjct: 194 KERKKANEVDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIF 253
Query: 289 SGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRRTHNGESVSYLF 348
SGPAI+RINNACFEAVVVTNTIPQ+ MK C+KI+ ID+SM+ AEA+RRTHNGESVSYLF
Sbjct: 254 SGPAISRINNACFEAVVVTNTIPQEDKMKHCSKIQVIDISMILAEAIRRTHNGESVSYLF 313
Query: 349 SNVP 352
S+VP
Sbjct: 314 SHVP 317
>2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2;
phosphorylation, nucleotide biosynthesis, transferase;
2.55A {Homo sapiens} PDB: 2c4k_A*
Length = 379
Score = 482 bits (1243), Expect = e-172
Identities = 136/335 (40%), Positives = 191/335 (57%), Gaps = 56/335 (16%)
Query: 49 GQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPCFPYARQ 108
+ V+I ESVRG+DV+I+Q+ S +VN +MELLIM+ ACK + A + VIP FPY++Q
Sbjct: 67 RETRVQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSKQ 126
Query: 109 DKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQ 168
K R R I +KL+A+M+ AG H+ITMDLH +
Sbjct: 127 CKM-------------------------RKRGSIVSKLLASMMCKAGLTHLITMDLHQKE 161
Query: 169 IQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIH 228
IQGFF+IPVDNL A P +L++I+E IP+++N++IV+ AKR S A+RL + A+IH
Sbjct: 162 IQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRLGIAVIH 221
Query: 229 KERKKA-------------------------------NEVASMVLVGDVKDRVAILVDDM 257
E + A E + +VGDV R+AI+VDD+
Sbjct: 222 GEAQDAESDLVDGRHSPPMVRSVAAIHPSLEIPMLIPKEKPPITVVGDVGGRIAIIVDDI 281
Query: 258 ADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTNTIPQDGHMK 317
D + AAE L E GA K++ + THG+ S A RI + + VVVTNTIP +
Sbjct: 282 IDDVDSFLAAAETLKERGAYKIFVMATHGLLSSDAPRRIEESAIDEVVVTNTIPHEVQKL 341
Query: 318 DCTKIRCIDVSMMFAEAVRRTHNGESVSYLFSNVP 352
C KI+ +D+SM+ +EA+RR HNGES+SYLF N+
Sbjct: 342 QCPKIKTVDISMILSEAIRRIHNGESMSYLFRNIG 376
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle
structural genomics center for infectious disease,
magnesium, metal binding; HET: AMP; 2.30A {Burkholderia
pseudomallei}
Length = 319
Score = 460 bits (1186), Expect = e-164
Identities = 136/301 (45%), Positives = 189/301 (62%), Gaps = 25/301 (8%)
Query: 49 GQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPCFPYARQ 108
G+I VEI E+VRG+DV+++QS NDNLMEL+IM++A K ASA R+TA IP F YARQ
Sbjct: 42 GEIQVEIQENVRGKDVFVLQSTCAPTNDNLMELMIMVDALKRASAGRITAAIPYFGYARQ 101
Query: 109 DKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQ 168
D++ + +R ISAK+VANML +AG + IITMDLHA Q
Sbjct: 102 DRRPRS-----------------------ARVAISAKVVANMLEIAGVERIITMDLHADQ 138
Query: 169 IQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIH 228
IQGFFDIPVDN+YA P +L +++ + + ++VSPD GG R ++A +LN + A+I
Sbjct: 139 IQGFFDIPVDNIYATPILLGDLRKQ--NYPDLLVVSPDVGGVVRARALAKQLNCDLAIID 196
Query: 229 KERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIF 288
K R KAN M ++G+V+ R +++DDM DT GT+C AA+ L E GA +V+A TH +
Sbjct: 197 KRRPKANVAEVMNIIGEVEGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVFAYATHPVL 256
Query: 289 SGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRRTHNGESVSYLF 348
SG A +RI + + +VVT+TIP C KIR + + + AE R G+SV LF
Sbjct: 257 SGGAADRIAASALDELVVTDTIPLSAESLACPKIRALSSAGLLAETFSRIRRGDSVMSLF 316
Query: 349 S 349
+
Sbjct: 317 A 317
>1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta
structure, domain duplication, phosphoribosyltransferase
type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis}
SCOP: c.61.1.2 c.61.1.2 PDB: 1dkr_A* 1ibs_A*
Length = 317
Score = 427 bits (1101), Expect = e-151
Identities = 134/301 (44%), Positives = 183/301 (60%), Gaps = 27/301 (8%)
Query: 49 GQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPCFPYARQ 108
G++ + I ES+RG D YI+QS S VN+++MELLIM++A K ASA + VIP + YARQ
Sbjct: 44 GEVQINIEESIRGCDCYIIQSTSDPVNEHIMELLIMVDALKRASAKTINIVIPYYGYARQ 103
Query: 109 DKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQ 168
D+K RSR PI+AKL AN+L AGA +I +DLHA Q
Sbjct: 104 DRKA------------------------RSREPITAKLFANLLETAGATRVIALDLHAPQ 139
Query: 169 IQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIH 228
IQGFFDIP+D+L P + ++ + E + +IVSPD GG R +ADRL A+I
Sbjct: 140 IQGFFDIPIDHLMGVPILGEYFEGKNLE--DIVIVSPDHGGVTRARKLADRLKAPIAIID 197
Query: 229 KERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIF 288
K R + N M +VG+++ + AIL+DD+ DT GTI AA L+E GA +VYA TH +
Sbjct: 198 KRRPRPNVAEVMNIVGNIEGKTAILIDDIIDTAGTITLAANALVENGAKEVYACCTHPVL 257
Query: 289 SGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRRTHNGESVSYLF 348
SGPA+ RINN+ + +VVTN+I K + + + V + AEA+ R H +SVSYLF
Sbjct: 258 SGPAVERINNSTIKELVVTNSIKLPEE-KKIERFKQLSVGPLLAEAIIRVHEQQSVSYLF 316
Query: 349 S 349
S
Sbjct: 317 S 317
>3lrt_A Ribose-phosphate pyrophosphokinase; phosphoribosyl transferase, ATP
analog binding, ATP-binding, metal-binding, nucleotide
biosynthesis; HET: ADP; 1.53A {Thermoplasma volcanium}
PDB: 3lpn_A* 3nag_A* 3mbi_A*
Length = 286
Score = 380 bits (979), Expect = e-133
Identities = 68/291 (23%), Positives = 130/291 (44%), Gaps = 40/291 (13%)
Query: 49 GQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPCFPYARQ 108
G++ + E + G +++I+ + + +ME+++ ++A + V + P + YARQ
Sbjct: 35 GELYLRYDEDLTGHNIFIIGNTH--SDAEVMEMILTLSAIQDYRTKSVNIIAPYYGYARQ 92
Query: 109 DKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQ 168
++ ++ PIS++++ + S + ++ I T+D+H +
Sbjct: 93 HQRY------------------------KNGEPISSQILTEIYS-SYSNSIATVDIHDEK 127
Query: 169 IQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIH 228
+ + +L+A A++++ K +VSPD GG RV I+ +L + I
Sbjct: 128 TLSYSKVKFSDLHANDAIVRYYKNV----DVDYVVSPDDGGLARVADISAKLGKKHFFIE 183
Query: 229 KERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIF 288
K+R V V DV + ++VDD+ T GTI ++ L E GA+K+Y HG+F
Sbjct: 184 KKRIDDRTVEMKVPNVDVNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGLF 243
Query: 289 SGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRRTH 339
+ N+I E + VT+T+ K I V +R
Sbjct: 244 VNGSENKILQNADE-IHVTDTVES--------KFSDISVYQEVCNYIRDID 285
>1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase,
transferase; 2.65A {Methanocaldococcus jannaschii} SCOP:
c.61.1.2 c.61.1.2 PDB: 1u9z_A*
Length = 284
Score = 379 bits (975), Expect = e-133
Identities = 72/286 (25%), Positives = 129/286 (45%), Gaps = 37/286 (12%)
Query: 49 GQIGVEIGESVRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPCFPYARQ 108
+I V I + + ++ I+ + ND ++E +++ +A + ++T V P YARQ
Sbjct: 35 NEIYVRIVDEINDDEAVIINT-QKNQNDAIVETILLCDALRDEGVKKITLVAPYLAYARQ 93
Query: 109 DKKDKGNGNGKKEADEREMIKKNNEWKFRSRAPISAKLVANMLSVAGADHIITMDLHASQ 168
DKK IS + +A + S D +IT++ H +
Sbjct: 94 DKKF------------------------NPGEAISIRALAKIYS-NIVDKLITINPHETH 128
Query: 169 IQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIH 228
I+ FF IP A P + +++K+ + + I+++PD G + + + LN E+ +
Sbjct: 129 IKDFFTIPFIYGDAVPKLAEYVKDKL---NDPIVLAPDKGALEFAKTASKILNAEYDYLE 185
Query: 229 KERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIF 288
K R E+ D KDR +VDD+ T GT+ A + L E GA K+ A H +
Sbjct: 186 KTRLSPTEIQIAPKTLDAKDRDVFIVDDIISTGGTMATAVKLLKEQGAKKIIAACVHPVL 245
Query: 289 SGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEA 334
G A+N++ +A E VV T+T ++ + V+ + +
Sbjct: 246 IGDALNKLYSAGVEEVVGTDTYLS--------EVSKVSVAEVIVDL 283
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Length = 208
Score = 57.7 bits (139), Expect = 5e-10
Identities = 27/161 (16%), Positives = 53/161 (32%), Gaps = 13/161 (8%)
Query: 135 KFRSRAPISAKLVANMLSVAGADHIITMDLH------ASQIQGFFDIPVDNLYAEPAVLK 188
+FR R A L A L+ G + + + L A ++ +D +
Sbjct: 2 RFRDRRHAGALL-AEALAPLGLEAPVVLGLPRGGVVVADEVARRLGGELDVVLVRKVGAP 60
Query: 189 WIKENIPEWKNS---IIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGD 245
E +++ P A + + + ++ RK+A +
Sbjct: 61 GNPEFALGAVGEGGELVLMPYALRYADQSYLEREAARQRDVL---RKRAERYRRVRPKAA 117
Query: 246 VKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHG 286
K R +LVDD T ++ A + + G +V +
Sbjct: 118 RKGRDVVLVDDGVATGASMEAALSVVFQEGPRRVVVAVPVA 158
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.7 bits (118), Expect = 1e-06
Identities = 45/290 (15%), Positives = 88/290 (30%), Gaps = 92/290 (31%)
Query: 103 FPYARQ--DKKDK--GNGNGKKEADEREMIKKNN--EWKFRSRAPISAKLVAN---MLSV 153
A+ ++ D + G D I NN ++ N M+
Sbjct: 1639 SKAAQDVWNRADNHFKDTYGFSILD----IVINNPVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 154 AGADHIIT-------MDLHASQIQGFFDIPVDNL----YAEPAVLKW---IKENIPEWKN 199
D + ++ H++ F L + +PA+ E + K+
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYT--FRSEKGLLSATQFTQPALTLMEKAAFE---DLKS 1749
Query: 200 SIIVSPD---AG---G---AKRVTSIADRLNVE--FALIHKERKKANEVA---------- 238
++ D AG G A + S+AD +++E ++ R +VA
Sbjct: 1750 KGLIPADATFAGHSLGEYAA--LASLADVMSIESLVEVVFY-RGMTMQVAVPRDELGRSN 1806
Query: 239 -SMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEA----GATKVYAILTHGIFSG--P 291
M+ + + + + + + L+E + Y +G
Sbjct: 1807 YGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVA------AGDLR 1860
Query: 292 AINRINNACFEAVVVTNTIPQDGHMKDCTKIRCID-----VSMMFAEAVR 336
A++ + N V N I K++ ID S+ E V
Sbjct: 1861 ALDTVTN-------VLNFI----------KLQKIDIIELQKSLSL-EEVE 1892
Score = 37.3 bits (86), Expect = 0.008
Identities = 55/373 (14%), Positives = 99/373 (26%), Gaps = 154/373 (41%)
Query: 28 QNAEYKGVQRYIPPRLSPED-RGQIGVEIGESVRGEDVY----IVQSGSGE----VNDNL 78
Q A Y + + +P + R + G + + + I ++ S E
Sbjct: 245 QLAHYVVTAKLL--GFTPGELRSYLK---GATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 79 MELLIMINACKIASASRVTAVIPCF---PYARQDKKDKGNGNGKKEADEREMIKKNNEWK 135
+ +L I R P P +D + G
Sbjct: 300 ITVLFFI-------GVRCYEAYPNTSLPPSILEDSLENNEG------------------- 333
Query: 136 FRSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENIP 195
+P MLS++ L Q+Q + + N + K + I
Sbjct: 334 --VPSP--------MLSISN--------LTQEQVQDY--VNKTNSHLPAG--KQV--EI- 368
Query: 196 EWKNSIIVSPD----AGGAK------------RVTSIADRLNVEFALIHKERKKA----- 234
S++ +G + + S D+ + F+ ERK
Sbjct: 369 ----SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS----ERKLKFSNRF 420
Query: 235 ------------NEVASMVLVGDVKDRVAILVDDMA----DT-----------------C 261
+ ++ VK+ V+ D+ DT
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV 480
Query: 262 GTICHAA---EKLMEAGATKVYAILTHGIFSGP-AINRINNACFEAVVVTNTIPQDGHMK 317
I E + AT IL F GP + + +T+ +DG
Sbjct: 481 DCIIRLPVKWETTTQFKATH---ILD---F-GPGGASGLGV-------LTHRN-KDG--- 522
Query: 318 DCTKIRCIDVSMM 330
T +R I +
Sbjct: 523 --TGVRVIVAGTL 533
Score = 31.9 bits (72), Expect = 0.38
Identities = 32/181 (17%), Positives = 53/181 (29%), Gaps = 58/181 (32%)
Query: 151 LSVAGADHIITMDLHASQIQGFF----DIPVDNLYA--EPAV--------LKWIKENIPE 196
L V A ASQ+Q F P + A EP L ++
Sbjct: 20 LLVPTASFF-----IASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSL--- 71
Query: 197 WKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERK--KANEVASMV--LVGDVK---DR 249
V P G D++ + L E + N++ ++ L+ + +
Sbjct: 72 ------VEPSKVGQ------FDQV-LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 250 VAILVDDMADTCGTICHAAEK-----LMEA---GATKVYAILTHGIFSGPAINRINNACF 301
L+ + +K L A G ++ A IF G + F
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA-----IFGGQG---NTDDYF 170
Query: 302 E 302
E
Sbjct: 171 E 171
>3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine
ribonucleotide biosynthesis, structural genomics,
infectious diseases; 1.75A {Bacillus anthracis} PDB:
3osc_A*
Length = 234
Score = 42.1 bits (99), Expect = 1e-04
Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 11/127 (8%)
Query: 172 FFDIPVDNLYAE--PAVLKWIKENIPEWKNS--IIVSPDAGGAKRVTSIADRLNVEFALI 227
+ D + Y + + ++E I E + +I G ++DR+++ +
Sbjct: 58 YCDNRLTLSYPKVRQTIAAGLEELIKEHFPTVEVIAGTATAGIAHAAWVSDRMDLPMCYV 117
Query: 228 HKERKKANEVASMVLVGDVK--DRVAILVDDMADTCGTICHAAEKLMEAGA--TKVYAIL 283
+ K + G + +V ++V+D+ T G+ E L EAG + +I
Sbjct: 118 RSKAKGHG--KGNQIEGKAEKGQKV-VVVEDLISTGGSAITCVEALREAGCEVLGIVSIF 174
Query: 284 THGIFSG 290
T+ + +G
Sbjct: 175 TYELEAG 181
>2yzk_A OPRT, oprtase, orotate phosphoribosyltransferase; rossmann fold,
glycosyltransferase, magnesium, pyrimidine biosynthesis,
structural genomics; 1.80A {Aeropyrum pernix}
Length = 178
Score = 40.7 bits (96), Expect = 2e-04
Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 10/111 (9%)
Query: 184 PAVLKWIKENIPEWKNSIIVSPDA------GGAKRVTSIADRLNVEFALIHKERKKANEV 237
+ + + E + A GG +A RL+ + ERK +
Sbjct: 38 ESSYSVALDLLLEVGGQDLARSSAVIGVATGGLPWAAMLALRLSKPLGYVRPERKGHGTL 97
Query: 238 ASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGAT--KVYAILTHG 286
+ + GD ++VDD+A T +I + E L G T ++ G
Sbjct: 98 SQ--VEGDPPKGRVVVVDDVATTGTSIAKSIEVLRSNGYTVGTALVLVDRG 146
>2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural
genomics, PSI, structure initiative; 1.95A
{Streptococcus pyogenes} SCOP: c.61.1.1
Length = 211
Score = 40.8 bits (96), Expect = 3e-04
Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 15/126 (11%)
Query: 177 VDN--LYAEPAVLKWIKENIPEWKNSIIVSPDA------GGAKRVTSIADRLNVEFALIH 228
DN + P I+ E + + G IAD++ + FA I
Sbjct: 39 TDNRVTLSYPKTRDLIENGFVETIKAHFPEVEVIAGTATAGIPHGAIIADKMTLPFAYIR 98
Query: 229 KERKKANEVASMVLVGDVK--DRVAILVDDMADTCGTICHAAEKLMEAGA--TKVYAILT 284
+ K + G V ++ ++++D+ T G++ AA GA V AI T
Sbjct: 99 SKPKDHGA--GNQIEGRVLKGQKM-VIIEDLISTGGSVLDAAAAASREGADVLGVVAIFT 155
Query: 285 HGIFSG 290
+ +
Sbjct: 156 YELPKA 161
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 4e-04
Identities = 55/406 (13%), Positives = 100/406 (24%), Gaps = 114/406 (28%)
Query: 24 FFAKQNAEYKGVQRYIP---PR-------------LSPEDR----GQIGVEIGESV---- 59
+ +++ Y Q + R L P G +G G++
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG--SGKTWVALD 169
Query: 60 --RGEDVYIVQSGS------GEVNDNLMELLIMINACKIASASRVTAVIPCFPYARQDKK 111
V N L ++ + +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT-------SRSDHSSN 222
Query: 112 DKGNGNGKKEADEREMIKKN--------------NEWK-FRSRAPI----SAKLVANMLS 152
K + + R + K W F I K V + LS
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 153 VAGADHIITMD----LHASQIQGFF----DIPVDNLYAE-----PAVLKWIKENIPEWKN 199
A HI L +++ D +L E P L I E+I +
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 200 SIIVSPDAGGAKRVTSIADRLNVEFALIHKE--------RKKANEVASMVLV---GDVKD 248
+ K T I LNV +++ A+ + +++L DV
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-IPTILLSLIWFDVIK 401
Query: 249 RVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTN 308
V + + + + K I I+ + N +V +
Sbjct: 402 SD---VMVVVNKL------HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 309 -TIPQDGHMKDCTKIRCIDVSMMFAEAVRRTHNGESVSYLFSNVPY 353
IP+ D +D Y +S++ +
Sbjct: 453 YNIPKTFDSDDLIPP-YLD------------------QYFYSHIGH 479
Score = 36.0 bits (82), Expect = 0.020
Identities = 39/229 (17%), Positives = 73/229 (31%), Gaps = 53/229 (23%)
Query: 149 NMLSVAGADHIITMDLHASQIQGFFDIPVD---NLYAE--PAVLK----WIKENIPEWKN 199
++LS DHII S F + + + VL+ ++ I +
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 200 SIIVSPDAGGAKRVTSIADRL---NVEFALIHKER-KKANEVASMVLVGDVKDRVA--IL 253
P + + DRL N FA + R + ++ +L + R A +L
Sbjct: 104 ----QP-SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL----ELRPAKNVL 154
Query: 254 VDDMADTCGTICHAAEKLMEAGATKVYAILTHGIF---------SGPAINRINNACFEAV 304
+D + G A + + KV + IF + + ++
Sbjct: 155 IDGVLG-SGKTWVALDVCLSY---KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ-- 208
Query: 305 VVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRRTHNGESVSYLFSNVPY 353
+ N + H + K+R + +RR L + PY
Sbjct: 209 IDPNWTSRSDHSSN-IKLRIHSIQ----AELRR---------LLKSKPY 243
>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase;
glycosyltransferase, MAGN pyrimidine biosynthesis; 2.40A
{Streptococcus mutans}
Length = 243
Score = 39.8 bits (93), Expect = 6e-04
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 213 VTSIADRLNVEFALIHKERKKANEVASMVLVGDVKD-RVAILVDDMADTCGTICHAAEKL 271
IAD++N+ A I + K A + G V + ++++D+ T G++ A
Sbjct: 115 GAIIADKMNLPLAYIRSKPKDHG--AGNQIEGRVTKGQKMVIIEDLISTGGSVLDAVAAA 172
Query: 272 MEAGA--TKVYAILTHGIFSGPA 292
GA V AI T+ + A
Sbjct: 173 QREGADVLGVVAIFTYELPKATA 195
>2xbu_A Hypoxanthine-guanine phosphoribosyltransferase;
glycosyltransferase, purine salvage, FLIP pepti; HET:
5GP; 1.80A {Saccharomyces cerevisiae} PDB: 2jkz_A*
2jky_A*
Length = 221
Score = 38.2 bits (88), Expect = 0.002
Identities = 18/118 (15%), Positives = 39/118 (33%), Gaps = 24/118 (20%)
Query: 188 KWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNV------------------------E 223
+ E I +K +I++ GG + L E
Sbjct: 19 QVSAERIKNFKPDLIIAIGGGGFIPARILRTFLKEPGVPTIRIFAIILSLYEDLNSVGSE 78
Query: 224 FALIHKERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYA 281
+ + + + D+ + ++VD++ DT T+ +A +L + A + A
Sbjct: 79 VEEVGVKVSRTQWIDYEQCKLDLVGKNVLIVDEVDDTRTTLHYALSELEKDAAEQAKA 136
>3qw4_B UMP synthase; N-terminal orotidine monophosphate decarboxylase
domain C-TE orotate phosphoribosyltransferase domain,
transferase, LYAS; HET: U5P; 3.00A {Leishmania donovani}
Length = 453
Score = 38.6 bits (90), Expect = 0.002
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 11/117 (9%)
Query: 172 FFDIPVDNLYAEPAVLKWI----KENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALI 227
+ D+ L PA+++ + + + +K I ++I++ +NV
Sbjct: 288 YIDLRR--LVTYPAIMRLVAREYAKVLRHYKFDRIAGLPYAALPIASAISNEMNVPLIYP 345
Query: 228 HKERKKANEVASMVLVGDVK--DRVAILVDDMADTCGTICHAAEKLMEAGATKVYAI 282
+E K + G+ K DRV I +DD+ T T A EKL AG V +
Sbjct: 346 RREAKIYGT--KAAIEGEYKKGDRVVI-IDDLVSTGETKVEAIEKLRSAGLEVVSIV 399
>2wns_A Orotate phosphoribosyltransferase; alternative splicing,
multifunctional enzyme, lyase, polymorphism,
decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo
sapiens}
Length = 205
Score = 37.3 bits (87), Expect = 0.003
Identities = 10/67 (14%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 213 VTSIADRLNVEFALIHKERKKANEVASMVLVGDVK--DRVAILVDDMADTCGTICHAAEK 270
T I + + KE K + G + + ++++D+ + ++ E
Sbjct: 77 ATVICSTNQIPMLIRRKETKDYGTKRL--VEGTINPGETC-LIIEDVVTSGSSVLETVEV 133
Query: 271 LMEAGAT 277
L + G
Sbjct: 134 LQKEGLK 140
>3n2l_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine
ribonucleotide biosynthesis, infectious diseases; 2.10A
{Vibrio cholerae}
Length = 238
Score = 37.2 bits (86), Expect = 0.004
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 8/88 (9%)
Query: 196 EWKNSIIVSPDAGGAKRVTSIADRL------NVEFALIHKERKKANEVASMVLVGDVKDR 249
+ ++ P G T+ A L + + KE K E ++ ++ R
Sbjct: 86 GIEFDVLFGPAYKGIPIATTTAVALADHHDVDTPYCFNRKEAKNHGE-GGNLVGSKLEGR 144
Query: 250 VAILVDDMADTCGTICHAAEKLMEAGAT 277
V ++ D + I + E + A
Sbjct: 145 VMLVDDVI-TAGTAIRESMELIQANKAD 171
>2p1z_A Phosphoribosyltransferase; STRU genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.44A {Corynebacterium diphtheriae}
Length = 180
Score = 36.5 bits (85), Expect = 0.006
Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 9/109 (8%)
Query: 184 PAVLKWIKENIPEWKNSIIVSPDAGGAKRVT--SIADRLNVEFALIHKERKKANEVASMV 241
+ + ++E +W + G T AD + ++ KE KK
Sbjct: 49 RLIGELLRELTADWDYVAVGGLTLGADPVATSVMHADGREIHAFVVRKEAKKH--GMQRR 106
Query: 242 LVGDVK--DRVAILVDDMADTCGTICHAAEKLMEAGAT--KVYAILTHG 286
+ G +V ++V+D T + A + L EAGA V ++
Sbjct: 107 IEGPDVVGKKV-LVVEDTTTTGNSPLTAVKALREAGAEVVGVATVVDRA 154
>1lh0_A OMP synthase; loop closure, monomer closure, orotate
phosphoribosyltransferase; HET: ORO PRP; 2.00A
{Salmonella typhimurium} SCOP: c.61.1.1 PDB: 1opr_A*
1sto_A* 1oro_A
Length = 213
Score = 35.9 bits (83), Expect = 0.010
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Query: 196 EWKNSIIVSPDAGGAKRVTSIADRL------NVEFALIHKERKKANEVASMVLVGDVKDR 249
+ ++ P G T+ A L ++ + KE K E ++ ++ R
Sbjct: 61 GIEFDLLFGPAYKGIPIATTTAVALAEHHDKDLPYCFNRKEAKDHGE-GGSLVGSALQGR 119
Query: 250 VAILVDDMADTCGTICHAAEKLMEAGAT 277
V +LVDD+ I + E + GAT
Sbjct: 120 V-MLVDDVITAGTAIRESMEIIQAHGAT 146
>1vch_A Phosphoribosyltransferase-related protein; structural genomics,
riken structural genomics/proteomics initiative, RSGI;
1.94A {Thermus thermophilus} SCOP: c.61.1.1
Length = 175
Score = 33.9 bits (78), Expect = 0.032
Identities = 18/125 (14%), Positives = 42/125 (33%), Gaps = 23/125 (18%)
Query: 175 IPVDNLYAEPAVLKWIKENIPEWKNS---IIVSPDAGGAKRVTSIADRLNVEFALIHKER 231
IP+ +P + E + I+ + + +A+ L + + + + R
Sbjct: 26 IPLVEFLGDPEFTRAAAEALRPLVPKEAEILFTTETSPIPLTHVLAEALGLPYVVARRRR 85
Query: 232 KK------ANEVAS--------MVLVGD-----VKDRVAILVDDMADTCGTICHAAEKLM 272
+ EV + + L + RV + V D+ + T+ + ++
Sbjct: 86 RPYMEDPIIQEVQTLTLGVGEVLWLDRRFAEKLLNQRVVL-VSDVVASGETMRAMEKMVL 144
Query: 273 EAGAT 277
AG
Sbjct: 145 RAGGH 149
>1vdm_A Purine phosphoribosyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 2.50A
{Pyrococcus horikoshii} SCOP: c.61.1.1
Length = 153
Score = 33.7 bits (78), Expect = 0.036
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 192 ENIPEWKNSIIVSPDAGGAKRVTSIADRLNV-EFALI------HKERKKANEVASMVLVG 244
E + E+K +I+ GG ++ L +I + + V ++ + G
Sbjct: 20 EKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGIDERGEKPVITIPIHG 79
Query: 245 DVKDRVAILVDDMADTCGTICHAAEKLMEAGATKV 279
D+KD+ ++VDD++DT T+ E++ + GA ++
Sbjct: 80 DLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEI 114
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.30
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 9/29 (31%)
Query: 124 EREMIKKNNEWKFRSR----APISAKLVA 148
E++ +K K ++ A SA +A
Sbjct: 18 EKQALK-----KLQASLKLYADDSAPALA 41
>3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural
genomics, center for structural genomics of infectious
diseases; 1.90A {Francisella tularensis}
Length = 232
Score = 30.9 bits (70), Expect = 0.42
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Query: 213 VTSIADRL------NVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICH 266
V +I+ L ++ +A KE K E + + D+ ++ +L+DD+
Sbjct: 96 VAAISTVLALKYNIDMPYAFDRKEAKDHGE-GGVFVGADMTNKKVLLIDDVMTAGTAFYE 154
Query: 267 AAEKLMEAGAT 277
+ KL A
Sbjct: 155 SYNKLKIINAK 165
>2ps1_A Orotate phosphoribosyltransferase 1; alpha beta, oprtase-OA-PRPP
complex; HET: ORO PRP; 1.75A {Saccharomyces cerevisiae}
PDB: 2pry_A* 2prz_A*
Length = 226
Score = 30.6 bits (69), Expect = 0.59
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 217 ADRLNVEFALIHKERKKANEVASMVLVGDVK--DRVAILVDDMADTCGTICHAAEKLMEA 274
+ N+++A KE K E ++VG R+ +++DD+ I A E + A
Sbjct: 95 SKFQNIQYAFNRKEAKDHGE--GGIIVGSALENKRI-LIIDDVMTAGTAINEAFEIISNA 151
Query: 275 GAT 277
Sbjct: 152 KGQ 154
>3e3u_A Peptide deformylase; metallo-enzyme, hydrolase, iron,
metal-binding, protein biosynthesis; HET: NVC; 1.56A
{Mycobacterium tuberculosis}
Length = 197
Score = 30.2 bits (69), Expect = 0.68
Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 231 RKKANEVASMVLVGDVKDRVAILVDDMADT 260
V G + +A L+ M DT
Sbjct: 15 HTATTPVTV-AADGSLPADLAQLIATMYDT 43
>1g2q_A Adenine phosphoribosyltransferase 1; dimer, single domain,
catalytic loop; 1.50A {Saccharomyces cerevisiae} SCOP:
c.61.1.1 PDB: 1g2p_A
Length = 187
Score = 30.2 bits (69), Expect = 0.69
Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 27/110 (24%)
Query: 190 IKENIPEWKNSIIVSPDA-----GGAKRVTSIADRLNVEFALIHKERKKANEVASM---- 240
++E PE K IV ++ G +A L V F + K K E
Sbjct: 51 LEEAFPEVKIDYIVGLESRGFLFGPT-----LALALGVGFVPVRKAGKLPGECFKATYEK 105
Query: 241 --------VLVGDVK--DRVAILVDDMADTCGTICHAAEKLME-AGATKV 279
+ + V I+VDD+ T G+ AA +L+E A +
Sbjct: 106 EYGSDLFEIQKNAIPAGSNV-IIVDDIIATGGSAA-AAGELVEQLEANLL 153
>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis,
amino acid kinase domain GCN5-related acetyltransferase,
GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB:
3zzi_A*
Length = 464
Score = 30.8 bits (70), Expect = 0.73
Identities = 8/49 (16%), Positives = 13/49 (26%), Gaps = 3/49 (6%)
Query: 208 GGAKRVTSIADRLNVEFALIHKER---KKANEVASMVLVGDVKDRVAIL 253
G +V + +E I R + V + V L
Sbjct: 86 GTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVVRKCFLEQNLKLVTAL 134
>1ws0_A Peptide deformylase 1; alpha + beta topology, hydrolase; 1.70A
{Bacillus cereus} PDB: 1ws1_A*
Length = 156
Score = 29.7 bits (68), Expect = 0.80
Identities = 5/30 (16%), Positives = 10/30 (33%), Gaps = 6/30 (20%)
Query: 231 RKKANEVASMVLVGDVKDRVAILVDDMADT 260
V + ++ L+ DM +T
Sbjct: 15 ETPCERVI------NFDKKLVKLLKDMHET 38
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola
phosphate phosphatase, bifunctional enzyme structural
genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB:
2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Length = 176
Score = 29.9 bits (68), Expect = 0.89
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 289 SGPAINRINNACFEAVVVTNTIPQDG 314
P + ++ A ++ V++TN QDG
Sbjct: 47 VIPQLLKLQKAGYKLVMITN---QDG 69
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV,
RNAse H, reverse transcriptase, transcription; 1.50A
{Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A
3v1r_A* 2hb5_A
Length = 165
Score = 29.4 bits (66), Expect = 1.1
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 59 VRGEDVYIVQSGSGEVNDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKGNGNG 118
+V ++ + EL+ + A K+A ++ V YA G
Sbjct: 46 TTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKLN-VYTDSRYAFATAHVHSEGRE 104
Query: 119 KKEADE 124
K +E
Sbjct: 105 IKNKNE 110
>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET:
ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A
3zzf_A*
Length = 307
Score = 29.8 bits (68), Expect = 1.4
Identities = 8/49 (16%), Positives = 13/49 (26%), Gaps = 3/49 (6%)
Query: 208 GGAKRVTSIADRLNVEFALIHKER---KKANEVASMVLVGDVKDRVAIL 253
G +V + +E I R + V + V L
Sbjct: 86 GTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVVRKCFLEQNLKLVTAL 134
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 1.7
Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 17/72 (23%)
Query: 177 VDNLYAEPAVLKWIKENIPEWK---NSIIVSPDAGGAKRVTSI---ADRLNVEFALIHKE 230
D L EP E+I +W+ + DA A + E+ E
Sbjct: 77 ADRLTQEP-------ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE 129
Query: 231 ----RKKANEVA 238
K N +A
Sbjct: 130 QVEKNKINNRIA 141
Score = 27.4 bits (60), Expect = 6.2
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 106 ARQDKKDKGNGNGKKEADEREMIKKN-NEWKFRSRAPISAKLVANM 150
R + D + E + RE KK+ EW + ++ K N
Sbjct: 96 KRLQELDAASK--VMEQEWREKAKKDLEEW-NQRQSEQVEKNKINN 138
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for
structural genomics of infectious diseases, csgid, HYDR;
2.10A {Staphylococcus aureus}
Length = 466
Score = 29.2 bits (65), Expect = 2.0
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 242 LVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTH 285
L+G K A+++D + D I A E+ G T +A TH
Sbjct: 41 LIGCQKTGEAMIIDPIRDLSSYIRVADEE----GLTITHAAETH 80
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc
hydrolase, metal binding protein; 1.90A {Pseudomonas
aeruginosa}
Length = 246
Score = 29.0 bits (65), Expect = 2.3
Identities = 16/81 (19%), Positives = 25/81 (30%), Gaps = 8/81 (9%)
Query: 206 DAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMADTCGTIC 265
D T I + F + ++ +N +V D ++V + GT
Sbjct: 5 DLPYNLTATKIDSDV---FVVTDRDFYSSN---VLVAKML--DGTVVIVSSPFENLGTQT 56
Query: 266 HAAEKLMEAGATKVYAILTHG 286
KV AI TH
Sbjct: 57 LMDWVAKTMKPKKVVAINTHF 77
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid
kinase, phosphoryl group transfer, arginine metabolism,
transferase; HET: ARG NLG; 2.75A {Thermotoga maritima}
SCOP: c.73.1.2
Length = 282
Score = 29.0 bits (66), Expect = 2.4
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 208 GGAKRVTSIADRLNVEFALIHKER---KKANEVASMVLVGDV-KDRVAIL 253
GG ++ + L +E + R +K E+ MVLVG + K+ V L
Sbjct: 61 GGGPAISQMMKDLGIEPVFKNGHRVTDEKTMEIVEMVLVGKINKEIVMNL 110
>1zn8_A APRT, adenine phosphoribosyltransferase; glycosyltransferase,
purine salvage; HET: AMP; 1.76A {Homo sapiens} SCOP:
c.61.1.1 PDB: 1ore_A* 1zn7_A* 1zn9_A*
Length = 180
Score = 28.3 bits (64), Expect = 2.5
Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 17/92 (18%)
Query: 201 IIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASM------------VLVGDVK- 247
I D+ G S+A L + LI K K + ++
Sbjct: 60 YIAGLDSRGFLFGPSLAQELGLGCVLIRKRGKLPGPTLWASYSLEYGKAELEIQKDALEP 119
Query: 248 -DRVAILVDDMADTCGTICHAAEKLME-AGAT 277
RV ++VDD+ T GT+ AA +L+ A
Sbjct: 120 GQRV-VVVDDLLATGGTMN-AACELLGRLQAE 149
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD
DATA with FBAR, structural genomics, PSI; 1.80A
{Mycobacterium tuberculosis}
Length = 148
Score = 28.1 bits (62), Expect = 2.9
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 9/84 (10%)
Query: 214 TSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICH------- 266
+ D ++ +++ E ++ + + +++DR+ D +C
Sbjct: 36 VGVPDLSSLGREVVYVEWATSDGTHNDNFLAELRDRIPADADQHERPVIFLCRSGNRSIG 95
Query: 267 AAEKLMEAGATKVYAILTHGIFSG 290
AAE EAG T Y +L F G
Sbjct: 96 AAEVATEAGITPAYNVL--DGFEG 117
>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas
campestris PV}
Length = 467
Score = 28.9 bits (65), Expect = 2.9
Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 3/49 (6%)
Query: 208 GGAKRVTSIADRLNVEFALIHKER---KKANEVASMVLVGDVKDRVAIL 253
G ++ + +E ++ R A + V V L
Sbjct: 99 GAGPQLDAELSAAGIEKQTVNGLRVTSPHALAIVRKVFQASNLKLVEAL 147
>1zxz_A PDF, peptide deformylase, mitochondrial; PDF1A, eukaryote, higher
plant, zinc ION, hydrolase; 2.80A {Arabidopsis thaliana}
PDB: 1zy0_A 1zy1_A
Length = 197
Score = 28.3 bits (64), Expect = 3.2
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 231 RKKANEVASMVLVGDVKDRVAILVDDMADT 260
+KA EV +R+ ++DDM
Sbjct: 15 HEKAREVDP---GEIGSERIQKIIDDMIKV 41
>1a3c_A PYRR, pyrimidine operon regulatory protein PYRR; transcription
regulation, attenuation protein, RNA-binding P
pyrimidine biosynthesis; 1.60A {Bacillus subtilis} SCOP:
c.61.1.1 PDB: 1a4x_A 2igb_A* 1xz8_A* 1non_A 1xzn_A*
Length = 181
Score = 28.0 bits (63), Expect = 3.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 245 DVKDRVAILVDDMADTCGTICHAAEKLMEAG 275
D+ D+ ILVDD+ T T+ + L++ G
Sbjct: 95 DITDQKVILVDDVLYTGRTVRAGMDALVDVG 125
>1y6h_A Peptide deformylase; open and close conformation, PDF, hydrolase;
2.20A {Leptospira interrogans} SCOP: d.167.1.1 PDB:
1sv2_A* 1vey_A* 1vev_A 1vez_A 1szz_A*
Length = 177
Score = 27.9 bits (63), Expect = 3.3
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 3/30 (10%)
Query: 231 RKKANEVASMVLVGDVKDRVAILVDDMADT 260
RK + V + L+ DM DT
Sbjct: 14 RKISEPVTEDEIQTK---EFKKLIRDMFDT 40
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily,
GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase;
HET: FX1; 1.68A {Bordetella bronchiseptica}
Length = 179
Score = 27.9 bits (63), Expect = 4.0
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 288 FSGPAINRINNACFEAVVVTNTIPQDG 314
S AI R+ A + V+ TN Q G
Sbjct: 31 GSLQAIARLTQADWTVVLATN---QSG 54
>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase,
arginine biosynthesis, phosphoryl group transfer,
protein crystallography; HET: NLG ANP; 1.5A {Escherichia
coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A*
1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*
Length = 258
Score = 28.2 bits (64), Expect = 4.0
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 208 GGAKRVTSIADRLNVEFALIHKER---KKANEVASMVLVGDV-KDRVAIL 253
GG V + LN+ + R ++ + L G K +A
Sbjct: 43 GGGCVVDELMKGLNLPVKKKNGLRVTPADQIDIITGALAGTANKTLLAWA 92
>1lme_A PDF, peptide deformylase; thermophIle, metalloenzyme,
deformylation, structural genomics, PSI, protein
structure initiative; 2.20A {Thermotoga maritima} SCOP:
d.167.1.1
Length = 176
Score = 27.5 bits (62), Expect = 4.2
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 6/30 (20%)
Query: 231 RKKANEVASMVLVGDVKDRVAILVDDMADT 260
RK+A V + + ++ M +T
Sbjct: 25 RKRAKPVT------KFDENLKKTIERMIET 48
>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine
biosynthesi binding, nucleotide-binding, transferase;
HET: ADP NLG; 2.06A {Streptococcus mutans}
Length = 279
Score = 27.9 bits (63), Expect = 4.3
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 208 GGAKRVTSIADRLNVEFALIHKER---KKANEVASMVLVGDV-KDRVAIL 253
GG + + + V I+ R K + S L+ V K+ L
Sbjct: 74 GGGFAINKLMEENQVPVKKINGLRVTSKDDMVLVSHALLDLVGKNLQEKL 123
>3g5k_A Peptide deformylase, mitochondrial; actinonin, hydrolase, iron,
metal-bindi mitochondrion, protein biosynthesis, transit
peptide; HET: BB2; 1.70A {Homo sapiens} PDB: 3g5p_A
Length = 183
Score = 27.6 bits (62), Expect = 4.3
Identities = 4/30 (13%), Positives = 6/30 (20%), Gaps = 3/30 (10%)
Query: 231 RKKANEVASMVLVGDVKDRVAILVDDMADT 260
R A V + L +
Sbjct: 16 RGVAAPVER---AQLGGPELQRLTQRLVQV 42
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex,
regulation of arginine biosynthesis nitrogen metabolism,
kinase, transferase, transcription; HET: ARG ADP NLG
ATP; 2.51A {Arabidopsis thaliana}
Length = 298
Score = 27.9 bits (63), Expect = 5.0
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 208 GGAKRVTSIADRLNVEFALIHKER---KKANEVASMVLVGDV-KDRVAIL 253
GG + +LN+ R E+ SMVLVG V K+ V+++
Sbjct: 76 GGGPDINRYLKQLNIPAEFRDGLRVTDATTMEIVSMVLVGKVNKNLVSLI 125
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
2.70A {Alicyclobacillus acidocaldarius subsp}
Length = 474
Score = 28.1 bits (62), Expect = 5.1
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 242 LVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTH 285
LVG + A ++D D + A + G V A+ TH
Sbjct: 20 LVGCQETGEACVIDPARDVEPYLLTAKRE----GLRIVAALETH 59
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription
regulation, transfera cyanobacteria, transcription; HET:
NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Length = 321
Score = 28.0 bits (63), Expect = 5.4
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 208 GGAKRVTSIADRLNVEFALIHKER---KKANEVASMVLVGDV-KDRVAIL 253
GG + + R+ +E + R EV MVLVG V KD V+ +
Sbjct: 89 GGGPEINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRI 138
>1lm4_A Peptide deformylase PDF1; metalloenzyme, hydrolase; 1.45A
{Staphylococcus aureus} SCOP: d.167.1.1 PDB: 1lqw_A
2ai9_A 1lmh_A 1q1y_A*
Length = 194
Score = 27.6 bits (62), Expect = 5.5
Identities = 5/30 (16%), Positives = 10/30 (33%), Gaps = 5/30 (16%)
Query: 231 RKKANEVASMVLVGDVKDRVAILVDDMADT 260
R+KA E+ + + M +
Sbjct: 27 RQKAAELEL-----PLTKEEKETLIAMREF 51
>3dld_A Peptide deformylase; bacterial blight, XOO1075, xanthomonas oryzae
PV. oryzae KACC10331, hydrolase; 2.60A {Xanthomonas
oryzae PV}
Length = 171
Score = 27.1 bits (61), Expect = 5.7
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 231 RKKANEVASMVLVGDVKDRVAILVDDMADT 260
+ A +V + +G + LV DM +T
Sbjct: 14 LRVAPQVTN---LGS--AELHALVSDMFET 38
>3etv_A Protein transport protein TIP20,linker,protein transport protein
DSL1; TIP20P-DSL1P complex, endoplasmic reticulum,
ER-golgi transport; 1.94A {Saccharomyces cerevisiae}
PDB: 3etu_A
Length = 355
Score = 27.8 bits (61), Expect = 6.1
Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 20 KASHFFAKQNAEYKGVQRYIPPRLSPEDRGQIGVEIGESVRGEDVYIVQSGSGEV----N 75
H + ++ V ++ L+ DR + E+G E V++ + + +
Sbjct: 257 HGQHCVSTVLTSFEAVCDFMLDGLAFRDRKTLSYELGPLFNTEFTKFVKNNASIILESLD 316
Query: 76 DNLMELLIMIN 86
L L+ +IN
Sbjct: 317 SPLKNLVSVIN 327
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
{Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Length = 181
Score = 27.1 bits (61), Expect = 6.8
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 6/30 (20%)
Query: 231 RKKANEVASMVLVGDVKDRVAILVDDMADT 260
R + EV ++ +DDM +T
Sbjct: 14 RTISKEVV------SFDAKLHQQLDDMYET 37
>3u04_A Peptide deformylase 1; ssgcid, actinonin, ehrlichia chaffeensi
structural genomics; HET: BB2; 1.70A {Ehrlichia
chaffeensis} PDB: 3oca_A
Length = 190
Score = 27.2 bits (61), Expect = 7.0
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 6/30 (20%)
Query: 231 RKKANEVASMVLVGDVKDRVAILVDDMADT 260
+ EV V + LVDDM +T
Sbjct: 17 SLCSEEVE------KVDQSIRKLVDDMFET 40
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical;
PFAM04748, structural PSI, protein structure initiative;
2.50A {Bacillus halodurans} SCOP: c.6.2.7
Length = 245
Score = 27.3 bits (60), Expect = 7.5
Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 5/91 (5%)
Query: 249 RVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTN 308
R AI++DD G + + A++ S A E +V
Sbjct: 5 RAAIIIDDF----GGDVKGVDDFLTGEIPVTVAVMPFLEHSTKQAEIAQAAGLEVIVHMP 60
Query: 309 TIPQDGHMKDCTKIRCIDVSMMFAEAVRRTH 339
P+ G + I ++ E R
Sbjct: 61 LEPKKGKISWLGP-SGITSNLSVGEVKSRVR 90
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine
biosynthesis, FEED-BACK inhibition, hexamer,
transferase; HET: NLG ADP; 2.95A {Pseudomonas
aeruginosa} SCOP: c.73.1.2
Length = 300
Score = 27.1 bits (61), Expect = 7.7
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 208 GGAKRVTSIADRLNVEFALIHKER---KKANEVASMVLVGDV-KDRVAIL 253
GG ++ + RL++E I R +V MVL G V KD V ++
Sbjct: 66 GGGPQIGDLLKRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLI 115
>1xeo_A Peptide deformylase; cobalt deformylase, formate, hydrolase; 1.30A
{Escherichia coli} SCOP: d.167.1.1 PDB: 1bs5_A 1bs6_A
1bs7_A 1bs8_A 1bsj_A* 1bsk_A* 1bsz_A* 1g27_A* 1bs4_A*
1icj_A* 1lru_A* 1xem_A 1xen_A 1g2a_A 2ai8_A* 4al3_A
4al2_A 3k6l_A* 1dff_A 1def_A ...
Length = 168
Score = 26.6 bits (60), Expect = 7.7
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 6/30 (20%)
Query: 231 RKKANEVASMVLVGDVKDRVAILVDDMADT 260
RK A V +V + +VDDM +T
Sbjct: 14 RKVAKPVE------EVNAEIQRIVDDMFET 37
>2w3t_A Peptide deformylase; protein biosynthesis, iron, nickel, hydrolase,
metal-binding; 1.69A {Escherichia coli} PDB: 2w3u_A
Length = 188
Score = 26.7 bits (60), Expect = 8.1
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 6/30 (20%)
Query: 231 RKKANEVASMVLVGDVKDRVAILVDDMADT 260
RK A V +V + +VDDM +T
Sbjct: 14 RKVAKPVE------EVNAEIQRIVDDMFET 37
>1ufr_A TT1027, PYR mRNA-binding attenuation protein; pyrimidine nucleotide
biosynthesis, transcriptional attenuation, RNA-binding
protein; 2.60A {Thermus thermophilus} SCOP: c.61.1.1
Length = 181
Score = 26.9 bits (60), Expect = 8.5
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 245 DVKDRVAILVDDMADTCGTICHAAEKLMEAG 275
D+ + +LVDD+ T T A + L++ G
Sbjct: 93 DLTGKAIVLVDDVLYTGRTARAALDALIDLG 123
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.60A {Burkholderia pseudomallei}
Length = 298
Score = 27.0 bits (60), Expect = 8.6
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 8/52 (15%)
Query: 242 LVGDVKDRVAILVD---DMADTCGTICHA-AEKLM----EAGATKVYAILTH 285
L+ D L+D D G A A++L+ GA + + TH
Sbjct: 21 LLFDSGSGECALIDSVLDYDPKSGRTRTASADQLIARVAALGARVRWLLETH 72
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics,
protein structure initiative, NYSGXRC, PSI; 2.80A
{Mycobacterium tuberculosis} SCOP: c.73.1.2
Length = 299
Score = 27.1 bits (61), Expect = 9.6
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 208 GGAKRVTSIADRLNVEFALIHKER---KKANEVASMVLVGDV-KDRVAIL 253
GG ++T++ RL +E R + +VA MVL G V ++ V ++
Sbjct: 65 GGGPQITAMLRRLGIEGDFKGGFRVTTPEVLDVARMVLFGQVGRELVNLI 114
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.395
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,378,135
Number of extensions: 329193
Number of successful extensions: 940
Number of sequences better than 10.0: 1
Number of HSP's gapped: 918
Number of HSP's successfully gapped: 88
Length of query: 353
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 258
Effective length of database: 4,049,298
Effective search space: 1044718884
Effective search space used: 1044718884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)