RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17482
(353 letters)
>d1dkua2 c.61.1.2 (A:167-315) Phosphoribosylpyrophosphate synthetase
{Bacillus subtilis [TaxId: 1423]}
Length = 149
Score = 164 bits (416), Expect = 7e-51
Identities = 67/150 (44%), Positives = 93/150 (62%), Gaps = 1/150 (0%)
Query: 199 NSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMA 258
+ +IVSPD GG R +ADRL A+I K R + N M +VG+++ + AIL+DD+
Sbjct: 1 DIVIVSPDHGGVTRARKLADRLKAPIAIIDKRRPRPNVAEVMNIVGNIEGKTAILIDDII 60
Query: 259 DTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTNTIPQDGHMKD 318
DT GTI AA L+E GA +VYA TH + SGPA+ RINN+ + +VVTN+I K
Sbjct: 61 DTAGTITLAANALVENGAKEVYACCTHPVLSGPAVERINNSTIKELVVTNSIKLP-EEKK 119
Query: 319 CTKIRCIDVSMMFAEAVRRTHNGESVSYLF 348
+ + + V + AEA+ R H +SVSYLF
Sbjct: 120 IERFKQLSVGPLLAEAIIRVHEQQSVSYLF 149
>d2c4ka2 c.61.1.2 (A:167-350) PRPP synthetase-associated protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 160 bits (406), Expect = 6e-49
Identities = 67/182 (36%), Positives = 97/182 (53%), Gaps = 30/182 (16%)
Query: 197 WKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERK------------------------ 232
++N++IV+ AKR S A+RL + A+IH E +
Sbjct: 2 YRNAVIVAKSPDAAKRAQSYAERLRLGLAVIHGEAQCTELDMDDGRHSPPMVKNATVHPG 61
Query: 233 ------KANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHG 286
A E + +VGDV R+AI+VDD+ D + AAE L E GA K+Y + THG
Sbjct: 62 LELPLMMAKEKPPITVVGDVGGRIAIIVDDIIDDVESFVAAAEILKERGAYKIYVMATHG 121
Query: 287 IFSGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRRTHNGESVSY 346
I S A I + + VVVTNT+P + C KI+ +D+S++ +EA+RR HNGES++Y
Sbjct: 122 ILSAEAPRLIEESSVDEVVVTNTVPHEVQKLQCPKIKTVDISLILSEAIRRIHNGESMAY 181
Query: 347 LF 348
LF
Sbjct: 182 LF 183
>d1dkua1 c.61.1.2 (A:8-166) Phosphoribosylpyrophosphate synthetase
{Bacillus subtilis [TaxId: 1423]}
Length = 159
Score = 147 bits (372), Expect = 4e-44
Identities = 70/172 (40%), Positives = 100/172 (58%), Gaps = 25/172 (14%)
Query: 21 ASHFFAKQNAEYKGVQRYIPPRLSPEDRGQIGVEIGESVRGEDVYIVQSGSGEVNDNLME 80
++ AK+ A+ GVQ ++ G++ + I ES+RG D YI+QS S VN+++ME
Sbjct: 9 SNPELAKEIADIVGVQ-LGKCSVTRFSDGEVQINIEESIRGCDCYIIQSTSDPVNEHIME 67
Query: 81 LLIMINACKIASASRVTAVIPCFPYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSRA 140
LLIM++A K ASA + VIP + YARQD+K + SR
Sbjct: 68 LLIMVDALKRASAKTINIVIPYYGYARQDRKAR------------------------SRE 103
Query: 141 PISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKE 192
PI+AKL AN+L AGA +I +DLHA QIQGFFDIP+D+L P + ++ +
Sbjct: 104 PITAKLFANLLETAGATRVIALDLHAPQIQGFFDIPIDHLMGVPILGEYFEG 155
>d2c4ka1 c.61.1.2 (A:7-166) PRPP synthetase-associated protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 160
Score = 147 bits (372), Expect = 4e-44
Identities = 73/176 (41%), Positives = 95/176 (53%), Gaps = 26/176 (14%)
Query: 20 KASHFFAKQNAEYKGVQRYIPPRLSPEDRGQIGVEIGESVRGEDVYIVQSGSGEVNDNLM 79
A AK+ E G + + E G+ VEI ESVRG+D++I+Q+ +VN +M
Sbjct: 11 AACTELAKRITERLGAEL-GKSVVYQETNGETRVEIKESVRGQDIFIIQTIPRDVNTAVM 69
Query: 80 ELLIMINACKIASASRVTAVIPCFPYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSR 139
ELLIM A K A A + VIP FPY++Q K R R
Sbjct: 70 ELLIMAYALKTACARNIIGVIPYFPYSKQSKM-------------------------RKR 104
Query: 140 APISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENIP 195
I KL+A+ML+ AG HIITMDLH +IQGFF PVDNL A P +L++I+E IP
Sbjct: 105 GSIVCKLLASMLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIP 160
>d1u9ya1 c.61.1.2 (A:1-155) Phosphoribosylpyrophosphate synthetase
{Methanocaldococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 119 bits (300), Expect = 2e-33
Identities = 38/174 (21%), Positives = 71/174 (40%), Gaps = 27/174 (15%)
Query: 21 ASHFFAKQNAEYKGVQRYIPPRLSPEDRGQIGVEIGESVRGEDVYIVQSGSGEVNDNLME 80
S A + A+ + +I V I + + ++ I+ + ND ++E
Sbjct: 8 QSQNLAFKVAKLLNTK-LTRVEYKRFPDNEIYVRIVDEINDDEAVIINTQK-NQNDAIVE 65
Query: 81 LLIMINACKIASASRVTAVIPCFPYARQDKKDKGNGNGKKEADEREMIKKNNEWKFRSRA 140
+++ +A + ++T V P YARQDKK F
Sbjct: 66 TILLCDALRDEGVKKITLVAPYLAYARQDKK------------------------FNPGE 101
Query: 141 PISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENI 194
IS + +A + S D +IT++ H + I+ FF IP A P + +++K+ +
Sbjct: 102 AISIRALAKIYSNIV-DKLITINPHETHIKDFFTIPFIYGDAVPKLAEYVKDKL 154
>d1u9ya2 c.61.1.2 (A:156-284) Phosphoribosylpyrophosphate synthetase
{Methanocaldococcus jannaschii [TaxId: 2190]}
Length = 129
Score = 117 bits (295), Expect = 4e-33
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 8/136 (5%)
Query: 199 NSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMA 258
+ I+++PD G + + + LN E+ + K R E+ D KDR +VDD+
Sbjct: 1 DPIVLAPDKGALEFAKTASKILNAEYDYLEKTRLSPTEIQIAPKTLDAKDRDVFIVDDII 60
Query: 259 DTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTNTIPQDGHMKD 318
T GT+ A + L E GA K+ A H + G A+N++ +A E VV T+T
Sbjct: 61 STGGTMATAVKLLKEQGAKKIIAACVHPVLIGDALNKLYSAGVEEVVGTDTYLS------ 114
Query: 319 CTKIRCIDVSMMFAEA 334
++ + V+ + +
Sbjct: 115 --EVSKVSVAEVIVDL 128
>d1vcha1 c.61.1.1 (A:2-175) Putative phosphoribosyltransferase
TTHA1613 {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 87.8 bits (217), Expect = 2e-21
Identities = 21/171 (12%), Positives = 55/171 (32%), Gaps = 28/171 (16%)
Query: 151 LSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENIPEW---KNSIIVSPDA 207
++V G + + + IP+ +P + E + + I+ + +
Sbjct: 5 ITVGGVTRHVPLI----EPLPGRRIPLVEFLGDPEFTRAAAEALRPLVPKEAEILFTTET 60
Query: 208 GGAKRVTSIADRLNVEFALIHKERK------------------KANEVASMVLVGDVKDR 249
+A+ L + + + + R+ + ++
Sbjct: 61 SPIPLTHVLAEALGLPYVVARRRRRPYMEDPIIQEVQTLTLGVGEVLWLDRRFAEKLLNQ 120
Query: 250 VAILVDDMADTCGTICHAAEKLMEAGATKVY--AILTHGIFSGPAINRINN 298
+LV D+ + T+ + ++ AG V A+ G G A++ +
Sbjct: 121 RVVLVSDVVASGETMRAMEKMVLRAGGHVVARLAVFRQG-TPGLAVDTVAE 170
>d1wd5a_ c.61.1.1 (A:) Putative phosphoribosyltransferase TT1426
(TTHA1462) {Thermus thermophilus [TaxId: 274]}
Length = 208
Score = 72.8 bits (178), Expect = 1e-15
Identities = 35/185 (18%), Positives = 59/185 (31%), Gaps = 12/185 (6%)
Query: 135 KFRSRAPISAKLVANMLSVAGADHIITMDLH------ASQIQGFFDIPVDNLYAEPAVLK 188
+FR R L+A L+ G + + + L A ++ +D +
Sbjct: 2 RFRDRRHA-GALLAEALAPLGLEAPVVLGLPRGGVVVADEVARRLGGELDVVLVRKVGAP 60
Query: 189 WIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKD 248
E A R + RK+A + K
Sbjct: 61 GNPEFALGAVGEGGELVLMPYALRYADQSYLEREAARQRDVLRKRAERYRRVRPKAARKG 120
Query: 249 RVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTN 308
R +LVDD T ++ A + + G +V + S A+ R+ A VV
Sbjct: 121 RDVVLVDDGVATGASMEAALSVVFQEGPRRVVVA--VPVASPEAVERLK---ARAEVVAL 175
Query: 309 TIPQD 313
++PQD
Sbjct: 176 SVPQD 180
>d1vdma1 c.61.1.1 (A:1-153) Pprobable purine
phosphoribosyltransferase PH0095 {Pyrococcus horikoshii
[TaxId: 53953]}
Length = 153
Score = 41.3 bits (96), Expect = 3e-05
Identities = 23/98 (23%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 190 IKENIPEWKNSIIVSPDAGGAKRVTSIADRL-NVEFALIHKERKKA------NEVASMVL 242
+ E + E+K +I+ GG ++ L ++ +I + K V ++ +
Sbjct: 18 LAEKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGIDERGEKPVITIPI 77
Query: 243 VGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVY 280
GD+KD+ ++VDD++DT T+ E++ + GA ++
Sbjct: 78 HGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIK 115
>d1o57a2 c.61.1.1 (A:75-276) Pur operon repressor (PurR), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 202
Score = 39.6 bits (92), Expect = 2e-04
Identities = 21/129 (16%), Positives = 42/129 (32%), Gaps = 22/129 (17%)
Query: 171 GFFDIPVDNLYAEPAVLKWI----KENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFAL 226
G+ + ++ +P+VL + E + ++++ G + A LNV +
Sbjct: 27 GYVYL--TDILGKPSVLSKVGKLFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVI 84
Query: 227 IHKERK----------------KANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEK 270
+ K+ K + S+ +++DD GTI
Sbjct: 85 VRKDNKVTEGSTVSINYVSGSSNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINL 144
Query: 271 LMEAGATKV 279
L E A
Sbjct: 145 LDEFNANVA 153
>d1y0ba1 c.61.1.1 (A:1-191) Xanthine phosphoribosyltransferase
{Bacillus subtilis [TaxId: 1423]}
Length = 191
Score = 35.0 bits (80), Expect = 0.007
Identities = 14/122 (11%), Positives = 32/122 (26%), Gaps = 21/122 (17%)
Query: 179 NLYAEPAVLKWI----KENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKA 234
N +P +++ I + + IV+ ++ G +L V K +
Sbjct: 27 NHQIDPLLMQRIGDEFASRFAKDGITKIVTIESSGIAPAVMTGLKLGVPVVFARKHKSLT 86
Query: 235 NEVASMV-----------------LVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGAT 277
+ +++DD + +AGA+
Sbjct: 87 LTDNLLTASVYSFTKQTESQIAVSGTHLSDQDHVLIIDDFLANGQAAHGLVSIVKQAGAS 146
Query: 278 KV 279
Sbjct: 147 IA 148
>d1l1qa_ c.61.1.1 (A:) Adenine PRTase {Giardia lamblia [TaxId:
5741]}
Length = 181
Score = 34.3 bits (78), Expect = 0.010
Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 20/124 (16%)
Query: 172 FFDIPVDNLYAEPAVLK----WIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALI 227
F D+ ++ + PA L + + + + +V ++ G +A+ L V F +
Sbjct: 24 FKDL--SDILSTPAALDAVRKEVTAHYKDVPITKVVGIESRGFILGGIVANSLGVGFVAL 81
Query: 228 HKERKKANEVASMVLVGDVKDRVAI--------------LVDDMADTCGTICHAAEKLME 273
K K +V + + V I L DD+ T GT+ A E
Sbjct: 82 RKAGKLPGDVCKCTFDMEYQKGVTIEVQKRQLGPHDVVLLHDDVLATGGTLLAAIELCET 141
Query: 274 AGAT 277
AG
Sbjct: 142 AGVK 145
>d1g2qa_ c.61.1.1 (A:) Adenine PRTase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 178
Score = 33.9 bits (77), Expect = 0.014
Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 13/115 (11%)
Query: 181 YAEPAVLKWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERK-------- 232
A ++E PE K IV ++ G ++A L V F + K K
Sbjct: 42 KLIDAFKLHLEEAFPEVKIDYIVGLESRGFLFGPTLALALGVGFVPVRKAGKLPGECFKA 101
Query: 233 -----KANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAI 282
+++ + I+VDD+ T G+ A E + + A +
Sbjct: 102 TYEKEYGSDLFEIQKNAIPAGSNVIIVDDIIATGGSAAAAGELVEQLEANLLEYN 156
>d1zn7a1 c.61.1.1 (A:3-180) Adenine PRTase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 178
Score = 32.7 bits (74), Expect = 0.032
Identities = 25/131 (19%), Positives = 41/131 (31%), Gaps = 22/131 (16%)
Query: 172 FFDIPVDNLYAEPAVLKWIKENIPEW-------KNSIIVSPDAGGAKRVTSIADRLNVEF 224
F DI + +PA + + + I D+ G S+A L +
Sbjct: 24 FRDI--SPVLKDPASFRAAIGLLARHLKATHGGRIDYIAGLDSRGFLFGPSLAQELGLGC 81
Query: 225 ALIHKERKKANEVASMVLVGDVK-------------DRVAILVDDMADTCGTICHAAEKL 271
LI K K + + ++VDD+ T GT+ A E L
Sbjct: 82 VLIRKRGKLPGPTLWASYSLEYGKAELEIQKDALEPGQRVVVVDDLLATGGTMNAACELL 141
Query: 272 MEAGATKVYAI 282
A + +
Sbjct: 142 GRLQAEVLECV 152
>d1yfza1 c.61.1.1 (A:3-180) Xanthine-guanine PRTase (XPRTase)
{Thermoanaerobacter tengcongensis [TaxId: 119072]}
Length = 178
Score = 31.9 bits (72), Expect = 0.066
Identities = 11/94 (11%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
Query: 188 KWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFAL--------IHKERKKANEVAS 239
+ I + E K+ +++ G ++ ++ +++ ++ +
Sbjct: 25 EMITRDY-EGKDLVLIGVLKGAIMFMSGLSRAIDLPLSIDFLAVSSYGSSTKSSGIVKII 83
Query: 240 MVLVGDVKDRVAILVDDMADTCGTICHAAEKLME 273
D++ + ++V+D+ D+ T+ + E L+
Sbjct: 84 KDHDIDIEGKDVLIVEDIIDSGLTLAYLRETLLG 117
>d1z7ga1 c.61.1.1 (A:4-217) Hypoxanthine-guanine PRTase (HGPRTase)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 214
Score = 31.5 bits (71), Expect = 0.098
Identities = 7/44 (15%), Positives = 17/44 (38%)
Query: 237 VASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVY 280
V + + + ++V+D+ DT T+ + + V
Sbjct: 112 VIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVK 155
>d1qb7a_ c.61.1.1 (A:) Adenine PRTase {Leishmania donovani [TaxId:
5661]}
Length = 236
Score = 30.8 bits (69), Expect = 0.21
Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 25/134 (18%)
Query: 172 FFDIPVDNLYAEPAVLKWIKENIPE------WKNSIIVSPDAGGAKRVTSIADRLNVEFA 225
F D+ ++ P LK I++ + + + I+ DA G IA L + F
Sbjct: 41 FADV--SSITESPETLKAIRDFLVQRYRAMSPAPTHILGFDARGFLFGPMIAVELEIPFV 98
Query: 226 LIHKERKKANEVAS-----------------MVLVGDVKDRVAILVDDMADTCGTICHAA 268
L+ K K A + + K +L+DD+ T GT
Sbjct: 99 LMRKADKNAGLLIRSEPYEKEYKEAAPEVMTIRYGSIGKGSRVVLIDDVLATGGTALSGL 158
Query: 269 EKLMEAGATKVYAI 282
+ + + A V +
Sbjct: 159 QLVEASDAVVVEMV 172
>d1nula_ c.61.1.1 (A:) Xanthine-guanine PRTase (XPRTase)
{Escherichia coli [TaxId: 562]}
Length = 150
Score = 29.6 bits (66), Expect = 0.28
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 3/91 (3%)
Query: 194 IPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLV---GDVKDRV 250
+P + I++ GG +A L + ++ + V +
Sbjct: 22 MPSEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEG 81
Query: 251 AILVDDMADTCGTICHAAEKLMEAGATKVYA 281
I++DD+ DT GT E +A ++A
Sbjct: 82 FIVIDDLVDTGGTAVAIREMYPKAHFVTIFA 112
>d1cjba_ c.61.1.1 (A:) Hypoxanthine-guanine PRTase (HGPRTase)
{Plasmodium falciparum [TaxId: 5833]}
Length = 228
Score = 29.5 bits (66), Expect = 0.43
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 227 IHKERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVY 280
++ + +K + ++V+D+ DT T+ E L + V
Sbjct: 115 YCNDQSTGTLEIVSEDLSCLKGKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVA 168
>d1tc1a_ c.61.1.1 (A:) Hypoxanthine PRTase {Trypanosoma cruzi
[TaxId: 5693]}
Length = 184
Score = 29.2 bits (65), Expect = 0.53
Identities = 11/94 (11%), Positives = 28/94 (29%), Gaps = 11/94 (11%)
Query: 191 KENIPEWKNSIIVSPDAGG-------AKRVTSIADRLNVEFALI----HKERKKANEVAS 239
K P +++S G + + + +EF +
Sbjct: 32 KGLRPYVNPLVLISVLKGSFMFTADLCRALCDFNVPVRMEFICVSSYGEGLTSSGQVRML 91
Query: 240 MVLVGDVKDRVAILVDDMADTCGTICHAAEKLME 273
+ ++ ++V+D+ DT T+ +
Sbjct: 92 LDTRHSIEGHHVLIVEDIVDTALTLNYLYHMYFT 125
>d1ufra_ c.61.1.1 (A:) Pyrimidine operon regulator PyrR {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 28.9 bits (64), Expect = 0.56
Identities = 12/57 (21%), Positives = 23/57 (40%)
Query: 228 HKERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILT 284
E +V + D+ + +LVDD+ T T A + L++ G + +
Sbjct: 76 LTEIGYRPQVRETRIPFDLTGKAIVLVDDVLYTGRTARAALDALIDLGRPRRIYLAV 132
>d1j7ja_ c.61.1.1 (A:) Hypoxanthine PRTase {Salmonella typhimurium
[TaxId: 90371]}
Length = 172
Score = 28.8 bits (64), Expect = 0.72
Identities = 11/92 (11%), Positives = 27/92 (29%), Gaps = 8/92 (8%)
Query: 190 IKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFA--------LIHKERKKANEVASMV 241
+ ++V G + + + V +
Sbjct: 24 TERYKDSGSEMVLVGLLRGSFMFMADLCREVQVPHEVDFMTASSYGSGMSTTRDVKILKD 83
Query: 242 LVGDVKDRVAILVDDMADTCGTICHAAEKLME 273
L D++ + ++V+D+ D+ T+ E L
Sbjct: 84 LDEDIRGKDVLIVEDIIDSGNTLSKVREILGL 115
>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides
fragilis [TaxId: 817]}
Length = 230
Score = 27.7 bits (60), Expect = 1.8
Identities = 13/119 (10%), Positives = 30/119 (25%), Gaps = 6/119 (5%)
Query: 212 RVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKL 271
+T ++D++ +L E M+++ + A L+D + T
Sbjct: 10 SITQLSDKVYTYVSLAEIEGWGMVPSNGMIVINN---HQAALLDTPINDAQTETLVNWVA 66
Query: 272 MEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSMM 330
A I H + V + + + +
Sbjct: 67 DSLHAKVTTFIPNHWH---GDCIGGLGYLQKKGVQSYANQMTIDLAKEKGLPVPEHGFT 122
>d1dqna_ c.61.1.1 (A:) Guanine PRTase {Giardia lamblia [TaxId:
5741]}
Length = 230
Score = 27.2 bits (60), Expect = 2.8
Identities = 22/149 (14%), Positives = 52/149 (34%), Gaps = 13/149 (8%)
Query: 142 ISAKLVANMLS--VAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENIPEWKN 199
++ K V ++LS + ++ ++ + F+ L A+ A + + E +
Sbjct: 5 VTGKPVKDVLSTFFKDRNDVLESEVKKFHLLATFE-ECKALAADTA--RRMNEYYKDVAE 61
Query: 200 SIIVSPDAGGAKRVTSIADR---LNVEFALIH-----KERKKANEVASMVLVGDVKDRVA 251
+ + GA S+ + R+++ L + R
Sbjct: 62 PVTLVALLTGAYLYASLLTVHLTFPYTLHFVKVSSYKGTRQESVVFDEEDLKQLKEKREV 121
Query: 252 ILVDDMADTCGTICHAAEKLMEAGATKVY 280
+L+D+ D+ TI E++ A +
Sbjct: 122 VLIDEYVDSGHTIFSIQEQIKHAKICSCF 150
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 26.3 bits (57), Expect = 4.5
Identities = 17/112 (15%), Positives = 31/112 (27%), Gaps = 15/112 (13%)
Query: 231 RKKANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSG 290
R+KA V + + L +DM +T + A + L +
Sbjct: 14 RRKARPV-------EDFSGIKRLAEDMLETMFEAKGVG---LAAPQIGLSQRLFVAVEYA 63
Query: 291 PAINRINNACFEA-----VVVTNTIPQDGHMKDCTKIRCIDVSMMFAEAVRR 337
VV N + C+ + +++E V R
Sbjct: 64 DEPEGEEERPLRELVRRVYVVANPVITYREGLVEGTEGCLSLPGLYSEEVPR 115
>d1ecfa1 c.61.1.1 (A:250-492) Glutamine PRPP amidotransferase,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 243
Score = 26.6 bits (58), Expect = 4.6
Identities = 22/162 (13%), Positives = 42/162 (25%), Gaps = 26/162 (16%)
Query: 188 KWIKENIPEWKNSIIVSPDAGGAKRVTSIADRLNVEFALI---------------HKERK 232
+ I + +++ IA L + + R+
Sbjct: 35 EKIAREWEDLDIDVVIPIPETSCDIALEIARILGKPYRQGFVKNRYVGRTFIMPGQQLRR 94
Query: 233 KANEVASMVLVGDVKDRVAILVDDMADTCGTICHAAEKLMEAGATKV-----YAILTHGI 287
K+ + +D+ +LVDD T E EAGA KV +
Sbjct: 95 KSVRRKLNANRAEFRDKNVLLVDDSIVRGTTSEQIIEMAREAGAKKVYLASAAPEIRFPN 154
Query: 288 FSGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRCIDVSM 329
G + ++ + D + I +
Sbjct: 155 VYGIDMPSATE------LIAHGREVDEIRQIIGADGLIFQDL 190
>d2nlya1 c.6.2.7 (A:31-254) Hypothetical protein BH1492 {Bacillus
halodurans [TaxId: 86665]}
Length = 224
Score = 26.4 bits (58), Expect = 4.9
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
Query: 249 RVAILVDDMADTCGTICHAAEKLMEAGATKVYAILTHGIFSGPAINRINNACFEAVVVTN 308
R AI++DD G + + A++ S A E +V
Sbjct: 3 RAAIIIDDF----GGDVKGVDDFLTGEIPVTVAVMPFLEHSTKQAEIAQAAGLEVIVHMP 58
Query: 309 TIPQDGHMKD 318
P+ G +
Sbjct: 59 LEPKKGKISW 68
>d3dy8a1 a.211.1.2 (A:182-505) High-affinity cGMP-specific
3',5'-cyclic phosphodiesterase 9A, PDE9A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 324
Score = 26.1 bits (57), Expect = 6.2
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 10/48 (20%)
Query: 161 TMDLHASQIQGFFDIPVDNLY---------AEPAVLKWIKENIPEWKN 199
+ +QI GF + ++ E +L+ + E+ ++
Sbjct: 265 KVTKATAQI-GFIKFVLIPMFETVTKLFPMVEEIMLQPLWESRDRYEE 311
>d1xeoa1 d.167.1.1 (A:1-164) Peptide deformylase {Escherichia coli
[TaxId: 562]}
Length = 164
Score = 25.5 bits (55), Expect = 8.5
Identities = 16/97 (16%), Positives = 26/97 (26%), Gaps = 9/97 (9%)
Query: 231 RKKANEVASMVLVGDVKDRVAILVDDMADTC---GTICHAAEKLMEAGATKVYAILTHGI 287
RK A V +V + +VDDM +T I AA ++ V + +
Sbjct: 14 RKVAKPVE------EVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSENRD 67
Query: 288 FSGPAINRINNACFEAVVVTNTIPQDGHMKDCTKIRC 324
IN + +
Sbjct: 68 ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAE 104
>d1pzma_ c.61.1.1 (A:) Hypoxanthine-guanine-xanthine PRTase
{Leishmania tarentolae [TaxId: 5689]}
Length = 183
Score = 25.4 bits (55), Expect = 8.8
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 245 DVKDRVAILVDDMADTCGTICHAAEKLMEAGATKVY 280
V++R +LV+D+ D+ T+ + ++ +
Sbjct: 96 SVENRHIMLVEDIVDSAITLQYLMRFMLAKKPASLK 131
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.395
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,286,002
Number of extensions: 59077
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 35
Length of query: 353
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 267
Effective length of database: 1,226,816
Effective search space: 327559872
Effective search space used: 327559872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)