BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17484
(283 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BW74|HLF_MOUSE Hepatic leukemia factor OS=Mus musculus GN=Hlf PE=2 SV=1
Length = 295
Score = 107 bits (268), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 103/204 (50%), Gaps = 22/204 (10%)
Query: 66 PYDSDLKVMLSPLVLSTGKTNC--KESSDKSKEDSELWSTVEAQAAFLGPNIWDKTLPYD 123
PY ++ +PL L + KE K D E S Q+AFLGP +WDKTLPYD
Sbjct: 18 PYGVLRSLLENPLKLPLHPEDAFSKEKDKGKKLDDESSSPTVPQSAFLGPTLWDKTLPYD 77
Query: 124 SD---LKYVDLDEFLSDNGIPVDGNTSQTSTGGAPTPAANLTGGHTTTTLQNVTSTISGR 180
D L+Y+DL+EFLS+NGIP S + +P P T ++ +++S +
Sbjct: 78 GDTFQLEYMDLEEFLSENGIP----PSPSQHDHSPHPPGLQPASSTAPSVMDLSSRATAP 133
Query: 181 LSP------CGSSQ---ASVMTKRERSPSPSEP---MSPLTISPPSPADSTLSFTSSTRD 228
L P C S ++ +PSP +P P+ P PAD LS
Sbjct: 134 LHPGIPSPNCMQSPIRPGQLLPANRNTPSPIDPDTIQVPVGYEP-DPADLALSSIPGQEM 192
Query: 229 FDPRSRTFSDEELKPQPMVKKSRK 252
FDPR R FS+EELKPQPM+KK+RK
Sbjct: 193 FDPRKRKFSEEELKPQPMIKKARK 216
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 23/38 (60%)
Query: 33 KESSDKSKEDSELWSTVEAQAAFLGPNIWDKTLPYDSD 70
KE K D E S Q+AFLGP +WDKTLPYD D
Sbjct: 42 KEKDKGKKLDDESSSPTVPQSAFLGPTLWDKTLPYDGD 79
>sp|Q16534|HLF_HUMAN Hepatic leukemia factor OS=Homo sapiens GN=HLF PE=2 SV=1
Length = 295
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 87/161 (54%), Gaps = 20/161 (12%)
Query: 107 QAAFLGPNIWDKTLPYDSD---LKYVDLDEFLSDNGIPVDGNTSQTSTGGAPTPAANLTG 163
Q+AFLGP +WDKTLPYD D L+Y+DL+EFLS+NGIP S + +P P
Sbjct: 61 QSAFLGPTLWDKTLPYDGDTFQLEYMDLEEFLSENGIP----PSPSQHDHSPHPPGLQPA 116
Query: 164 GHTTTTLQNVTSTISGRLSP------CGSS---QASVMTKRERSPSPSEP---MSPLTIS 211
++ +++S S L P C S ++ +PSP +P P+
Sbjct: 117 SSAAPSVMDLSSRASAPLHPGIPSPNCMQSPIRPGQLLPANRNTPSPIDPDTIQVPVGYE 176
Query: 212 PPSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRK 252
P PAD LS FDPR R FS+EELKPQPM+KK+RK
Sbjct: 177 -PDPADLALSSIPGQEMFDPRKRKFSEEELKPQPMIKKARK 216
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 52 QAAFLGPNIWDKTLPYDSD 70
Q+AFLGP +WDKTLPYD D
Sbjct: 61 QSAFLGPTLWDKTLPYDGD 79
>sp|Q64709|HLF_RAT Hepatic leukemia factor OS=Rattus norvegicus GN=Hlf PE=2 SV=1
Length = 295
Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 88/161 (54%), Gaps = 20/161 (12%)
Query: 107 QAAFLGPNIWDKTLPYDSD---LKYVDLDEFLSDNGIPVDGNTSQTSTGGAPTPAANLTG 163
Q+AFLGP +WDKTLPYD D L+Y+DL+EFLS+NGIP S + +P P
Sbjct: 61 QSAFLGPTLWDKTLPYDGDTFQLEYMDLEEFLSENGIP----PSPSQHDHSPHPPGLQPA 116
Query: 164 GHTTTTLQNVTSTISGRLSP------CGSSQ---ASVMTKRERSPSPSEP---MSPLTIS 211
T ++ +++S + L P C + ++ +PSP +P P+
Sbjct: 117 SSTAPSVMDLSSRATAPLHPGIPSPNCMQNPIRPGQLLPANRNTPSPIDPDTIQVPVGYE 176
Query: 212 PPSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRK 252
P PAD LS FDPR R FS+EELKPQPM+KK+RK
Sbjct: 177 P-DPADLALSSIPGPEMFDPRKRKFSEEELKPQPMIKKARK 216
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 52 QAAFLGPNIWDKTLPYDSD 70
Q+AFLGP +WDKTLPYD D
Sbjct: 61 QSAFLGPTLWDKTLPYDGD 79
>sp|Q92172|TEF_CHICK Transcription factor VBP OS=Gallus gallus GN=TEF PE=1 SV=2
Length = 319
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 101/199 (50%), Gaps = 16/199 (8%)
Query: 88 KESSDKSKEDSELWSTVEAQAAFLGPNIWDKTLPYDSD---LKYVDLDEFLSDNGIPVDG 144
KE K +ED ++ A +A L P IWDKT+PYD + L+Y+DLDEFL +NGIP
Sbjct: 62 KEKKIKLEEDEAAAASTMAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIP--S 119
Query: 145 NTSQTSTGGAP-TPAANLT----GGHTTTTLQNVTSTISGRLSPCGSSQASVMTKRERSP 199
+ + P P A L +T + + +ST + S SS S +P
Sbjct: 120 SPTHLDLNQNPLMPVAKLEEKEPASASTGSPVSSSSTAVYQQSEAASSTESPPQNERNTP 179
Query: 200 SPSEP--MSPLTISPPSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQNMGL 257
SP +P + P PAD LS F+PR F++E+LKPQPM+KK++K +
Sbjct: 180 SPIDPDCVEVEVNFNPDPADLVLSSVPGGELFNPRKHKFTEEDLKPQPMIKKAKKVFVPD 239
Query: 258 RQEME----RLKKENLSLR 272
Q+ E R KK N++ +
Sbjct: 240 EQKDEKYWTRRKKNNVAAK 258
Score = 34.7 bits (78), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 24 PADSRKTNCKESSDKSKEDSELWSTVEAQAAFLGPNIWDKTLPYDSD---LKVM-LSPLV 79
P D+R KE K +ED ++ A +A L P IWDKT+PYD + L+ M L +
Sbjct: 55 PRDARLD--KEKKIKLEEDEAAAASTMAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFL 112
Query: 80 LSTG 83
L G
Sbjct: 113 LENG 116
>sp|P97516|TEF_PHOSU Thyrotroph embryonic factor (Fragment) OS=Phodopus sungorus GN=TEF
PE=2 SV=1
Length = 221
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 97/190 (51%), Gaps = 15/190 (7%)
Query: 95 KEDSELWSTVEAQAAFLGPNIWDKTLPYDSD---LKYVDLDEFLSDNGIPVDGNTSQTST 151
+ED ++ A +A L P IWDKT+PYD + L+Y+DLDEFL +NGIP +
Sbjct: 2 EEDESAAASTMAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPA---SPTHLA 58
Query: 152 GGAPTPAANLTGGHTTTTLQNVTSTISGRL---SPCGSSQASVMTKRERSPSPSEP--MS 206
P A L G + ++ + S + S SS S + K +PSP +P +
Sbjct: 59 QNLLLPVAELEGKESASSSTASPPSSSTAVFQPSETVSSTESSLEKERETPSPIDPNCVE 118
Query: 207 PLTISPPSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQNMGLRQEME---- 262
P PAD LS F+PR F++E+LKPQPM+KK++K + Q+ E
Sbjct: 119 VDVNFNPDPADLVLSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWT 178
Query: 263 RLKKENLSLR 272
R KK N++ +
Sbjct: 179 RRKKNNVAAK 188
>sp|Q9JLC6|TEF_MOUSE Thyrotroph embryonic factor OS=Mus musculus GN=Tef PE=2 SV=1
Length = 301
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 96/181 (53%), Gaps = 19/181 (10%)
Query: 106 AQAAFLGPNIWDKTLPYDSD---LKYVDLDEFLSDNGIPVD-GNTSQTSTGGAPTPAANL 161
A +A L P IWDKT+PYD + L+Y+DLDEFL +NGIP + +Q P A L
Sbjct: 71 AVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAQNLL----LPVAEL 126
Query: 162 TGGHTTTTLQNVTSTISGRL---SPCGSSQASVMTKRERSPSPSEPMSPLTISP---PSP 215
G + ++ + S + S SS S + K +PSP +P S + + P P
Sbjct: 127 EGKESASSSTASPPSSSTAIFQPSETVSSTESSLEKERETPSPIDP-SCVEVDVNFNPDP 185
Query: 216 ADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQNMGLRQEME----RLKKENLSL 271
AD LS F+PR F++E+LKPQPM+KK++K + Q+ E R KK N++
Sbjct: 186 ADLVLSSVPGGELFNPRKHRFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNVAA 245
Query: 272 R 272
+
Sbjct: 246 K 246
>sp|Q10587|TEF_HUMAN Thyrotroph embryonic factor OS=Homo sapiens GN=TEF PE=1 SV=3
Length = 303
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 92/179 (51%), Gaps = 15/179 (8%)
Query: 106 AQAAFLGPNIWDKTLPYDSD---LKYVDLDEFLSDNGIPVDGNTSQTSTGGAPTPAANLT 162
A +A L P IWDKT+PYD + L+Y+DLDEFL +NGIP + P A L
Sbjct: 73 AVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPA---SPTHLAHNLLLPVAELE 129
Query: 163 GGHTTTTLQNVTSTISGRL---SPCGSSQASVMTKRERSPSPSEP--MSPLTISPPSPAD 217
G + ++ + S + S SS S + K +PSP +P + P PAD
Sbjct: 130 GKESASSSTASPPSSSTAIFQPSETVSSTESSLEKERETPSPIDPNCVEVDVNFNPDPAD 189
Query: 218 STLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQNMGLRQEME----RLKKENLSLR 272
LS F+PR F++E+LKPQPM+KK++K + Q+ E R KK N++ +
Sbjct: 190 LVLSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNVAAK 248
>sp|P41224|TEF_RAT Thyrotroph embryonic factor OS=Rattus norvegicus GN=Tef PE=1 SV=3
Length = 301
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 94/180 (52%), Gaps = 17/180 (9%)
Query: 106 AQAAFLGPNIWDKTLPYDSD---LKYVDLDEFLSDNGIPVD-GNTSQTSTGGAPTPAANL 161
A +A L P IWDKT+PYD + L+Y+DLDEFL +NGIP + +Q P A L
Sbjct: 71 AVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAQNLL----LPVAEL 126
Query: 162 TGGHTTTTLQNVTSTISGRL---SPCGSSQASVMTKRERSPSPSEP--MSPLTISPPSPA 216
G + ++ + S + S SS S + K +PSP +P + P PA
Sbjct: 127 EGKESASSSTASPPSSSTAIFQPSETVSSTESSLEKERETPSPIDPNCVEVDVNFNPDPA 186
Query: 217 DSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQNMGLRQEME----RLKKENLSLR 272
D LS F+PR F++E+LKPQPM+KK++K + Q+ E R KK N++ +
Sbjct: 187 DLVLSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNVAAK 246
>sp|Q10586|DBP_HUMAN D site-binding protein OS=Homo sapiens GN=DBP PE=1 SV=1
Length = 325
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 82/172 (47%), Gaps = 29/172 (16%)
Query: 109 AFLGPNIWDKTLPYDSDLKYVDLDEFLSDNGIPVDGNTSQTSTGG-------APTPAANL 161
L P +W++TLP+ D++YVDLD FL ++G+P + AP+P
Sbjct: 98 GLLAPLLWERTLPF-GDVEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGS 156
Query: 162 TG--------GHTTTTLQNVTSTISGRLSPCGSSQASVMTKRERSPSPSEP--MSPLTIS 211
G GH + T SG + +T R+ +PSP +P + L
Sbjct: 157 CGSASPRSSPGHAPA--RAALGTASG--------HRAGLTSRD-TPSPVDPDTVEVLMTF 205
Query: 212 PPSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQNMGLRQEMER 263
P PAD LS FDPR FS+EELKPQP++KK+RK + Q+ E+
Sbjct: 206 EPDPADLALSSIPGHETFDPRRHRFSEEELKPQPIMKKARKIQVPEEQKDEK 257
>sp|Q60925|DBP_MOUSE D site-binding protein OS=Mus musculus GN=Dbp PE=2 SV=2
Length = 325
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 13/163 (7%)
Query: 110 FLGPNIWDKTLPYDSDLKYVDLDEFLSDNGIPVDGNTSQTSTGGAPTPA-------ANLT 162
P +W++TLP+ D++YVDLD FL ++G+ AP+PA +
Sbjct: 99 LFAPLLWERTLPF-GDVEYVDLDAFLLEHGL-PPSPPPPGGLSPAPSPARTPAPSPGPGS 156
Query: 163 GGHTTTTLQNVTSTISGRLSPCGSSQASVMTKRERSPSPSEP--MSPLTISPPSPADSTL 220
++ + L G +A +T R+ +PSP +P + L P PAD L
Sbjct: 157 CSSSSPRSSPGHAPARATLGAAGGHRAG-LTSRD-TPSPVDPDTVEVLMTFEPDPADLAL 214
Query: 221 SFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQNMGLRQEMER 263
S FDPR FS+EELKPQP++KK+RK + Q+ E+
Sbjct: 215 SSIPGHETFDPRRHRFSEEELKPQPIMKKARKVQVPEEQKDEK 257
>sp|P16443|DBP_RAT D site-binding protein OS=Rattus norvegicus GN=Dbp PE=2 SV=2
Length = 325
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 13/163 (7%)
Query: 110 FLGPNIWDKTLPYDSDLKYVDLDEFLSDNGIPVDGNTSQTSTGGAPTPA-------ANLT 162
P +W++TLP+ D++YVDLD FL ++G+ AP+PA +
Sbjct: 99 LFAPLLWERTLPF-GDVEYVDLDAFLLEHGL-PPSPPPPGGLSPAPSPARTPAPSPGPGS 156
Query: 163 GGHTTTTLQNVTSTISGRLSPCGSSQASVMTKRERSPSPSEP--MSPLTISPPSPADSTL 220
++ + L G +A +T R+ +PSP +P + L P PAD L
Sbjct: 157 CSSSSPRSSPGHAPARATLGAAGGHRAG-LTSRD-TPSPVDPDTVEVLMTFEPDPADLAL 214
Query: 221 SFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQNMGLRQEMER 263
S FDPR FS+EELKPQP++KK+RK + Q+ E+
Sbjct: 215 SSIPGHETFDPRRHRFSEEELKPQPIMKKARKVQVPEEQKDEK 257
>sp|Q32PF6|DBP_BOVIN D site-binding protein OS=Bos taurus GN=DBP PE=2 SV=2
Length = 325
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 109 AFLGPNIWDKTLPYDSDLKYVDLDEFLSDNGIPVDGNTSQTSTGG-------APTPAANL 161
L P +W++TLP+ D++YVDLD FL ++G+P + AP+P
Sbjct: 98 GLLAPLLWERTLPF-GDVEYVDLDAFLLEHGLPPSPPPPGGPSPAPSPVRTPAPSPRPGS 156
Query: 162 TG--------GHTTTTLQNVTSTISGRLSPCGSSQASVMTKRERSPSPSEP--MSPLTIS 211
G GH + + +T R+ +PSP +P + L
Sbjct: 157 CGSASPRSSPGHAPARAALGAAG----------GHRAGLTSRD-TPSPVDPDTVEVLMTF 205
Query: 212 PPSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQNMGLRQEMER 263
P PAD LS FDPR FS+EELKPQP++KK+RK + Q+ E+
Sbjct: 206 EPDPADLALSSIPGHETFDPRRHRFSEEELKPQPIMKKARKIQVPEEQKDEK 257
>sp|Q9M2E8|HDG1_ARATH Homeobox-leucine zipper protein HDG1 OS=Arabidopsis thaliana
GN=HDG1 PE=2 SV=1
Length = 808
Score = 35.8 bits (81), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 228 DFDPRSRTFSDEELKPQPMVKKSRKQNMGLRQEMERLKKENLSLRDKL 275
+ DPR F + + Q + R +N LRQE ++L+ EN+S+R+ +
Sbjct: 148 NLDPRQVKFWFQNRRTQMKTQIERHENALLRQENDKLRAENMSVREAM 195
>sp|A9C3W3|KAZRA_DANRE Kazrin-A OS=Danio rerio GN=kazna PE=3 SV=1
Length = 786
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 29/90 (32%)
Query: 173 VTSTISGRLSPCGSSQASVMT-----KRERSPSPSEPMSPLTISPPSPADSTLSFTSSTR 227
+ S+ + R+SPC S QASVM+ + ERS +PS+ SP T S +S
Sbjct: 331 MMSSAAARISPCHSKQASVMSDASVMEGERSSTPSD----------SPRHRTHSLCNSLE 380
Query: 228 DFDPRSRTFSDEELKPQPMVKKSRKQNMGL 257
D + + R + +K+ MGL
Sbjct: 381 DLEEQRR--------------RKKKERMGL 396
>sp|Q7Y0V9|ROC4_ORYSJ Homeobox-leucine zipper protein ROC4 OS=Oryza sativa subsp.
japonica GN=ROC4 PE=2 SV=2
Length = 813
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 213 PSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQNMGLRQEMERLKKENLSLR 272
P P + + S +PR F + + Q ++ R +N L+QE ++L+ ENLS+R
Sbjct: 127 PHPDEKQRAELSKRLGLEPRQVKFWFQNRRTQMKMQLERHENSLLKQENDKLRSENLSIR 186
Query: 273 DKLS 276
+ S
Sbjct: 187 EATS 190
>sp|P46607|HGL2_ARATH Homeobox-leucine zipper protein GLABRA 2 OS=Arabidopsis thaliana
GN=GL2 PE=2 SV=3
Length = 747
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%)
Query: 205 MSPLTISPPSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQNMGLRQEMERL 264
M L P P + S PR F + + Q + R +N L+ E+E+L
Sbjct: 116 MEALFKETPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKAELEKL 175
Query: 265 KKENLSLRDKLSK 277
++EN ++R+ SK
Sbjct: 176 REENKAMRESFSK 188
>sp|Q9FJS2|HDG5_ARATH Homeobox-leucine zipper protein HDG5 OS=Arabidopsis thaliana
GN=HDG5 PE=2 SV=3
Length = 826
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%)
Query: 203 EPMSPLTISPPSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQNMGLRQEME 262
+ M L P P D S+ PR F + + Q ++ R +N+ LR E +
Sbjct: 124 QEMEALFKENPHPDDKQRKRLSAELGLKPRQVKFWFQNRRTQMKAQQDRNENVMLRAEND 183
Query: 263 RLKKENLSLRDKL 275
LK EN L+ +L
Sbjct: 184 NLKSENCHLQAEL 196
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.123 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,057,275
Number of Sequences: 539616
Number of extensions: 4697854
Number of successful extensions: 17816
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 271
Number of HSP's that attempted gapping in prelim test: 16207
Number of HSP's gapped (non-prelim): 1554
length of query: 283
length of database: 191,569,459
effective HSP length: 116
effective length of query: 167
effective length of database: 128,974,003
effective search space: 21538658501
effective search space used: 21538658501
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 60 (27.7 bits)