Query psy17484
Match_columns 283
No_of_seqs 126 out of 146
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 23:39:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17484.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17484hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gu4_A CAAT/enhancer binding p 94.3 0.031 1.1E-06 42.9 3.4 24 254-277 52-75 (78)
2 1hjb_A Ccaat/enhancer binding 94.2 0.043 1.5E-06 43.0 4.2 25 254-278 52-76 (87)
3 4dzn_A Coiled-coil peptide CC- 92.3 0.1 3.5E-06 34.1 3.0 21 255-275 5-25 (33)
4 2yy0_A C-MYC-binding protein; 91.4 0.17 5.9E-06 36.2 3.5 29 251-279 25-53 (53)
5 1ci6_A Transcription factor AT 88.4 0.52 1.8E-05 34.3 4.1 23 254-276 39-61 (63)
6 1t2k_D Cyclic-AMP-dependent tr 88.2 0.43 1.5E-05 34.2 3.5 22 254-275 38-59 (61)
7 3r4h_A Coiled coil helix CC-TE 85.5 0.87 3E-05 29.9 3.5 22 255-276 5-26 (34)
8 2wt7_A Proto-oncogene protein 82.5 1.2 4.2E-05 32.1 3.6 24 254-277 39-62 (63)
9 2w6b_A RHO guanine nucleotide 81.7 1.3 4.4E-05 32.4 3.5 23 255-277 13-35 (56)
10 1jnm_A Proto-oncogene C-JUN; B 80.2 0.87 3E-05 32.7 2.1 23 254-276 38-60 (62)
11 1kd8_A GABH AIV, GCN4 acid bas 80.2 1.5 5.2E-05 29.5 3.1 19 254-272 17-35 (36)
12 2yy0_A C-MYC-binding protein; 79.8 1.4 4.8E-05 31.4 3.1 28 254-281 21-48 (53)
13 3ra3_B P2F; coiled coil domain 79.4 2 7E-05 27.1 3.3 24 248-271 3-26 (28)
14 1kd8_B GABH BLL, GCN4 acid bas 76.8 2 6.8E-05 29.0 2.9 20 254-273 17-36 (36)
15 1go4_E MAD1 (mitotic arrest de 73.3 2.3 8E-05 34.1 3.1 26 256-281 16-41 (100)
16 3l4f_A RHO guanine nucleotide 66.4 5.4 0.00018 29.6 3.5 22 255-276 10-31 (61)
17 1nkp_B MAX protein, MYC proto- 61.3 11 0.00037 28.0 4.4 25 254-278 56-80 (83)
18 1use_A VAsp, vasodilator-stimu 59.3 7.6 0.00026 27.3 3.0 18 256-273 11-29 (45)
19 1a93_B MAX protein, coiled coi 57.6 14 0.00049 24.5 3.9 25 251-275 6-30 (34)
20 3m48_A General control protein 56.9 9.1 0.00031 25.3 2.9 19 257-275 12-30 (33)
21 1deb_A APC protein, adenomatou 55.5 10 0.00036 27.4 3.3 13 261-273 12-24 (54)
22 1zxa_A CGMP-dependent protein 55.3 11 0.00039 28.2 3.6 29 254-282 27-55 (67)
23 3c3f_A Alpha/beta peptide with 49.9 10 0.00034 25.3 2.2 16 254-269 17-32 (34)
24 2wt7_B Transcription factor MA 49.6 19 0.00064 28.3 4.2 28 254-281 57-88 (90)
25 2a3d_A Protein (de novo three- 49.4 10 0.00035 28.3 2.5 18 255-272 54-71 (73)
26 3kin_B Kinesin heavy chain; mo 49.3 10 0.00036 30.3 2.8 27 247-273 91-117 (117)
27 3gpv_A Transcriptional regulat 49.1 7.2 0.00025 31.8 1.8 49 234-282 53-132 (148)
28 2dgc_A Protein (GCN4); basic d 49.0 6.8 0.00023 28.5 1.5 27 254-280 32-58 (63)
29 1got_G GT-gamma; complex (GTP- 48.1 3.7 0.00013 31.0 -0.1 22 256-277 21-42 (73)
30 4fm3_A Uncharacterized hypothe 47.8 11 0.00037 30.1 2.6 23 248-270 74-96 (98)
31 1gd2_E Transcription factor PA 47.2 6.3 0.00022 29.5 1.1 18 254-271 52-69 (70)
32 1fmh_A General control protein 47.0 9.4 0.00032 24.9 1.7 16 254-269 17-32 (33)
33 1uo4_A General control protein 46.0 12 0.00041 24.9 2.1 14 254-267 17-30 (34)
34 2bni_A General control protein 45.1 12 0.00042 24.8 2.1 16 254-269 17-32 (34)
35 3c3g_A Alpha/beta peptide with 44.6 14 0.00047 24.5 2.2 15 254-268 16-30 (33)
36 2dgc_A Protein (GCN4); basic d 43.6 30 0.001 25.0 4.2 17 254-270 46-62 (63)
37 1g6u_A Domain swapped dimer; d 43.0 17 0.00058 25.3 2.7 21 255-275 23-43 (48)
38 3nmd_A CGMP dependent protein 42.9 27 0.00093 26.5 4.0 30 254-283 42-71 (72)
39 2yfv_C SCM3, KLLA0F05115P; cel 42.4 20 0.0007 26.7 3.2 23 259-281 21-48 (63)
40 3gp4_A Transcriptional regulat 41.1 15 0.00051 29.8 2.5 49 233-281 38-117 (142)
41 1uii_A Geminin; human, DNA rep 39.5 36 0.0012 26.5 4.3 51 227-277 5-78 (83)
42 2wt7_B Transcription factor MA 38.3 29 0.00099 27.2 3.7 21 256-276 66-86 (90)
43 2jee_A YIIU; FTSZ, septum, coi 37.9 30 0.001 26.8 3.6 24 257-280 53-80 (81)
44 1dh3_A Transcription factor CR 37.6 35 0.0012 24.0 3.7 27 255-281 25-51 (55)
45 1go4_E MAD1 (mitotic arrest de 35.6 28 0.00094 27.8 3.2 25 256-280 72-96 (100)
46 1deb_A APC protein, adenomatou 34.5 38 0.0013 24.5 3.4 25 256-280 14-38 (54)
47 1nkp_A C-MYC, MYC proto-oncoge 32.2 58 0.002 24.7 4.4 25 254-278 61-85 (88)
48 3v86_A De novo design helix; c 31.9 48 0.0016 20.7 3.1 20 256-275 4-23 (27)
49 3ra3_A P1C; coiled coil domain 31.8 46 0.0016 20.9 3.1 19 254-272 9-27 (28)
50 1k1f_A Breakpoint cluster regi 31.6 20 0.00069 27.2 1.7 22 261-282 28-49 (72)
51 3kin_B Kinesin heavy chain; mo 30.4 39 0.0013 26.9 3.3 28 255-282 85-112 (117)
52 2hy6_A General control protein 29.9 51 0.0017 21.9 3.2 16 254-269 17-32 (34)
53 1nlw_A MAD protein, MAX dimeri 29.8 66 0.0023 24.1 4.3 32 245-276 40-78 (80)
54 2wvr_A Geminin; DNA replicatio 29.6 50 0.0017 29.6 4.2 26 254-279 124-149 (209)
55 1ykh_B RNA polymerase II holoe 29.2 62 0.0021 26.4 4.4 9 245-253 65-73 (132)
56 2j5u_A MREC protein; bacterial 28.3 46 0.0016 29.5 3.8 13 263-275 47-59 (255)
57 2zvf_A Alanyl-tRNA synthetase; 27.8 51 0.0017 26.6 3.6 22 257-278 37-58 (171)
58 1am9_A Srebp-1A, protein (ster 27.6 52 0.0018 24.5 3.4 26 255-280 53-78 (82)
59 1yke_B RNA polymerase II holoe 27.0 69 0.0024 26.8 4.4 8 246-253 66-73 (151)
60 2wuj_A Septum site-determining 26.6 31 0.0011 24.4 1.9 21 255-275 37-57 (57)
61 3v2d_2 50S ribosomal protein L 26.3 63 0.0022 23.9 3.6 20 254-273 18-37 (72)
62 2wt7_A Proto-oncogene protein 25.8 72 0.0025 22.7 3.7 27 254-280 25-51 (63)
63 2jn6_A Protein CGL2762, transp 25.7 16 0.00053 26.8 0.2 19 256-274 63-81 (97)
64 1vq8_V 50S ribosomal protein L 25.4 60 0.0021 23.9 3.3 19 254-272 14-32 (71)
65 1uii_A Geminin; human, DNA rep 25.0 91 0.0031 24.2 4.4 16 254-269 62-77 (83)
66 2wq1_A General control protein 24.4 47 0.0016 21.9 2.2 16 254-269 16-31 (33)
67 3hh0_A Transcriptional regulat 24.4 38 0.0013 27.5 2.3 48 233-280 40-115 (146)
68 1wt6_A Myotonin-protein kinase 24.0 76 0.0026 24.6 3.8 24 249-272 49-72 (81)
69 2wg5_A General control protein 24.0 68 0.0023 25.1 3.6 22 252-273 14-35 (109)
70 3r8s_Y 50S ribosomal protein L 23.7 53 0.0018 23.7 2.7 20 254-273 11-30 (63)
71 3v1a_A Computational design, M 23.7 73 0.0025 22.4 3.3 26 245-270 15-45 (48)
72 2r2v_A GCN4 leucine zipper; co 23.2 87 0.003 20.8 3.4 16 254-269 17-32 (34)
73 1r73_A TM1492, 50S ribosomal p 22.7 58 0.002 23.7 2.8 19 254-272 11-29 (66)
74 4g1a_A AQ-C16C19 peptide; heli 22.7 51 0.0017 21.3 2.1 25 255-279 3-27 (32)
75 1hlo_A Protein (transcription 22.4 44 0.0015 24.5 2.1 14 254-267 66-79 (80)
76 3j21_W 50S ribosomal protein L 22.0 77 0.0026 23.5 3.3 20 254-273 11-30 (72)
77 3twe_A Alpha4H; unknown functi 21.9 94 0.0032 19.4 3.1 20 257-276 6-25 (27)
78 3m48_A General control protein 21.9 97 0.0033 20.4 3.4 14 254-267 16-29 (33)
79 3w03_C DNA repair protein XRCC 21.5 63 0.0022 28.2 3.2 22 254-275 154-175 (184)
80 1wlq_A Geminin; coiled-coil; 2 21.4 1E+02 0.0036 23.9 4.1 19 254-272 40-58 (83)
81 3he5_B Synzip2; heterodimeric 21.2 74 0.0025 22.4 2.9 17 261-277 33-49 (52)
82 1ci6_A Transcription factor AT 21.1 75 0.0026 22.7 3.1 27 254-280 25-51 (63)
83 3qfl_A MLA10; coiled-coil, (CC 21.0 85 0.0029 24.3 3.6 26 255-280 22-47 (115)
84 2oxj_A Hybrid alpha/beta pepti 20.8 86 0.0029 20.8 3.0 13 254-266 17-29 (34)
85 3bbo_Z Ribosomal protein L29; 20.7 46 0.0016 29.0 2.2 19 254-272 75-93 (173)
86 2kzf_A RBFA, ribosome-binding 20.7 40 0.0014 26.2 1.6 20 249-268 7-26 (106)
87 3a7p_A Autophagy protein 16; c 20.4 73 0.0025 27.2 3.3 26 254-279 63-88 (152)
No 1
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=94.29 E-value=0.031 Score=42.94 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q psy17484 254 NMGLRQEMERLKKENLSLRDKLSK 277 (283)
Q Consensus 254 NaaLRqEVa~LRKElgr~rniLsK 277 (283)
|..||.||..|++|+..||++|..
T Consensus 52 N~~L~~~v~~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 52 NERLQKKVEQLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999864
No 2
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=94.24 E-value=0.043 Score=42.96 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Q psy17484 254 NMGLRQEMERLKKENLSLRDKLSKF 278 (283)
Q Consensus 254 NaaLRqEVa~LRKElgr~rniLsKY 278 (283)
|+.||.+|+.|++|+..||++|...
T Consensus 52 N~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 52 NERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999998754
No 3
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=92.35 E-value=0.1 Score=34.07 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy17484 255 MGLRQEMERLKKENLSLRDKL 275 (283)
Q Consensus 255 aaLRqEVa~LRKElgr~rniL 275 (283)
+||+||+|.|+||+..+|=-+
T Consensus 5 aalkqeiaalkkeiaalkfei 25 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEI 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999998877544
No 4
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=91.37 E-value=0.17 Score=36.15 Aligned_cols=29 Identities=24% Similarity=0.460 Sum_probs=24.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy17484 251 RKQNMGLRQEMERLKKENLSLRDKLSKFT 279 (283)
Q Consensus 251 RKvNaaLRqEVa~LRKElgr~rniLsKYE 279 (283)
|.-|+-||++|.+|++++..+++.|.+||
T Consensus 25 k~E~~eLk~k~~~L~~~~~el~~~l~~~e 53 (53)
T 2yy0_A 25 RLELAEMKEKYEAIVEENKKLKAKLAQYE 53 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34488888888888888999999999986
No 5
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=88.43 E-value=0.52 Score=34.32 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q psy17484 254 NMGLRQEMERLKKENLSLRDKLS 276 (283)
Q Consensus 254 NaaLRqEVa~LRKElgr~rniLs 276 (283)
|..|+.+|..|++|+..+|++|-
T Consensus 39 N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 39 NEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999875
No 6
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=88.16 E-value=0.43 Score=34.18 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q psy17484 254 NMGLRQEMERLKKENLSLRDKL 275 (283)
Q Consensus 254 NaaLRqEVa~LRKElgr~rniL 275 (283)
|..|+.||..|+.|+..++.+|
T Consensus 38 n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 38 NGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999986
No 7
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=85.54 E-value=0.87 Score=29.88 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q psy17484 255 MGLRQEMERLKKENLSLRDKLS 276 (283)
Q Consensus 255 aaLRqEVa~LRKElgr~rniLs 276 (283)
+|++||++.++|||..+|=-|+
T Consensus 5 aaikqelaaikkelaaikfela 26 (34)
T 3r4h_A 5 AAIKQELAAIKKELAAIKFELA 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999988775544
No 8
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=82.46 E-value=1.2 Score=32.14 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q psy17484 254 NMGLRQEMERLKKENLSLRDKLSK 277 (283)
Q Consensus 254 NaaLRqEVa~LRKElgr~rniLsK 277 (283)
|..|+.||..|+.|+..++.+|..
T Consensus 39 n~~L~~ei~~L~~e~~~Lk~~l~~ 62 (63)
T 2wt7_A 39 KSALQTEIANLLKEKEKLEFILAA 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998853
No 9
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=81.73 E-value=1.3 Score=32.41 Aligned_cols=23 Identities=22% Similarity=0.572 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Q psy17484 255 MGLRQEMERLKKENLSLRDKLSK 277 (283)
Q Consensus 255 aaLRqEVa~LRKElgr~rniLsK 277 (283)
-|||.||.+||+|+.+++..|..
T Consensus 13 YaLkDqV~eL~qe~k~m~k~lEe 35 (56)
T 2w6b_A 13 YALKDEVQELRQDNKKMKKSLEE 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999887754
No 10
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=80.19 E-value=0.87 Score=32.70 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q psy17484 254 NMGLRQEMERLKKENLSLRDKLS 276 (283)
Q Consensus 254 NaaLRqEVa~LRKElgr~rniLs 276 (283)
|..|+.||..|+.|+..+|.+|-
T Consensus 38 n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 38 NSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888763
No 11
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=80.18 E-value=1.5 Score=29.53 Aligned_cols=19 Identities=37% Similarity=0.424 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy17484 254 NMGLRQEMERLKKENLSLR 272 (283)
Q Consensus 254 NaaLRqEVa~LRKElgr~r 272 (283)
|..|-+||+.||+.|+.|.
T Consensus 17 ~~~Le~EV~RL~~ll~~~e 35 (36)
T 1kd8_A 17 VWHLENEVARLEKENAECE 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccc
Confidence 8899999999999999884
No 12
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=79.83 E-value=1.4 Score=31.39 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy17484 254 NMGLRQEMERLKKENLSLRDKLSKFTDL 281 (283)
Q Consensus 254 NaaLRqEVa~LRKElgr~rniLsKYE~~ 281 (283)
--+||+|+++||+++..+++-+....+-
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999888776543
No 13
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=79.35 E-value=2 Score=27.09 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=17.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHH
Q psy17484 248 KKSRKQNMGLRQEMERLKKENLSL 271 (283)
Q Consensus 248 KKARKvNaaLRqEVa~LRKElgr~ 271 (283)
+.-+.-|+.|+||+|.|.-|+..+
T Consensus 3 rrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHh
Confidence 333444999999999998887543
No 14
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=76.79 E-value=2 Score=28.95 Aligned_cols=20 Identities=30% Similarity=0.414 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy17484 254 NMGLRQEMERLKKENLSLRD 273 (283)
Q Consensus 254 NaaLRqEVa~LRKElgr~rn 273 (283)
|..|.+||+.||+=|+.|+.
T Consensus 17 ~~~Le~eV~RLk~ll~~~~~ 36 (36)
T 1kd8_B 17 LWHLKNKVARLKKKNAECKA 36 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhccccC
Confidence 89999999999999998873
No 15
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=73.32 E-value=2.3 Score=34.07 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy17484 256 GLRQEMERLKKENLSLRDKLSKFTDL 281 (283)
Q Consensus 256 aLRqEVa~LRKElgr~rniLsKYE~~ 281 (283)
.||+||..|+.|+.++|..+..+|..
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888888888888888888777653
No 16
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=66.35 E-value=5.4 Score=29.61 Aligned_cols=22 Identities=23% Similarity=0.579 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q psy17484 255 MGLRQEMERLKKENLSLRDKLS 276 (283)
Q Consensus 255 aaLRqEVa~LRKElgr~rniLs 276 (283)
-|||.||.+||+|+.+.+.-++
T Consensus 10 YalkDev~eLk~e~k~~k~~le 31 (61)
T 3l4f_A 10 YALKDEVQELRQDNKKMKKSLE 31 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999987766554
No 17
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=61.29 E-value=11 Score=28.01 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Q psy17484 254 NMGLRQEMERLKKENLSLRDKLSKF 278 (283)
Q Consensus 254 NaaLRqEVa~LRKElgr~rniLsKY 278 (283)
|..|.+|+.+||+|+..++..|..-
T Consensus 56 ~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 56 NHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999988653
No 18
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=59.28 E-value=7.6 Score=27.27 Aligned_cols=18 Identities=33% Similarity=0.577 Sum_probs=13.0
Q ss_pred HHHHHH-HHHHHHHHHHHH
Q psy17484 256 GLRQEM-ERLKKENLSLRD 273 (283)
Q Consensus 256 aLRqEV-a~LRKElgr~rn 273 (283)
+|+||+ .++|+|+.+.|+
T Consensus 11 ~~KqEIL~E~RkElqK~K~ 29 (45)
T 1use_A 11 RVKQELLEEVKKELQKVKE 29 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 466774 578888888776
No 19
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=57.59 E-value=14 Score=24.51 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=21.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Q psy17484 251 RKQNMGLRQEMERLKKENLSLRDKL 275 (283)
Q Consensus 251 RKvNaaLRqEVa~LRKElgr~rniL 275 (283)
|+-|++..+++.+||+.+..+..-+
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHH
Confidence 5559999999999999998887654
No 20
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=56.91 E-value=9.1 Score=25.33 Aligned_cols=19 Identities=21% Similarity=0.176 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy17484 257 LRQEMERLKKENLSLRDKL 275 (283)
Q Consensus 257 LRqEVa~LRKElgr~rniL 275 (283)
|.+|..+|+.|+.|+|.+|
T Consensus 12 Ll~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 12 LLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHHh
Confidence 3344444444444455444
No 21
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=55.51 E-value=10 Score=27.36 Aligned_cols=13 Identities=54% Similarity=0.672 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q psy17484 261 MERLKKENLSLRD 273 (283)
Q Consensus 261 Va~LRKElgr~rn 273 (283)
|+.||+|+.++|.
T Consensus 12 Ve~Lk~ENshLrr 24 (54)
T 1deb_A 12 VEALKMENSNLRQ 24 (54)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHH
Confidence 4455555544443
No 22
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=55.32 E-value=11 Score=28.16 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q psy17484 254 NMGLRQEMERLKKENLSLRDKLSKFTDLL 282 (283)
Q Consensus 254 NaaLRqEVa~LRKElgr~rniLsKYE~~~ 282 (283)
=..|.+++.+=..|+.++|+.|-||++|+
T Consensus 27 I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 27 IKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46677777777788888888888888876
No 23
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=49.93 E-value=10 Score=25.25 Aligned_cols=16 Identities=19% Similarity=0.027 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHH
Q psy17484 254 NMGLRQEMERLKKENL 269 (283)
Q Consensus 254 NaaLRqEVa~LRKElg 269 (283)
|..|..||+.||.=|+
T Consensus 17 ~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 17 LYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHh
Confidence 7888888888776443
No 24
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=49.60 E-value=19 Score=28.30 Aligned_cols=28 Identities=32% Similarity=0.324 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh----hhhcc
Q psy17484 254 NMGLRQEMERLKKENLSLRDKLS----KFTDL 281 (283)
Q Consensus 254 NaaLRqEVa~LRKElgr~rniLs----KYE~~ 281 (283)
|.-|+.||..|++|+.+++.-+. ||+++
T Consensus 57 ~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 57 KTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888877765444 45554
No 25
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=49.36 E-value=10 Score=28.32 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy17484 255 MGLRQEMERLKKENLSLR 272 (283)
Q Consensus 255 aaLRqEVa~LRKElgr~r 272 (283)
.|||.|.+.+|.||..||
T Consensus 54 ealrkeaaairdelqayr 71 (73)
T 2a3d_A 54 EALRKEAAAIRDELQAYR 71 (73)
T ss_dssp THHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 477777777777777765
No 26
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=49.31 E-value=10 Score=30.30 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=21.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy17484 247 VKKSRKQNMGLRQEMERLKKENLSLRD 273 (283)
Q Consensus 247 IKKARKvNaaLRqEVa~LRKElgr~rn 273 (283)
+++-++.+.+||.+|+.|..|+.+.||
T Consensus 91 ~~~e~~~~~~L~~~i~~Le~el~~~R~ 117 (117)
T 3kin_B 91 YEKEKEKNKALKSVIQHLEVELNRWRN 117 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344444599999999999999999885
No 27
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=49.14 E-value=7.2 Score=31.78 Aligned_cols=49 Identities=22% Similarity=0.358 Sum_probs=33.2
Q ss_pred CCCCccccCCcchhhhhhhh-------------------------------hhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q psy17484 234 RTFSDEELKPQPMVKKSRKQ-------------------------------NMGLRQEMERLKKENLSLRDKLSKFTDLL 282 (283)
Q Consensus 234 hkFSEEELKPQPMIKKARKv-------------------------------NaaLRqEVa~LRKElgr~rniLsKYE~~~ 282 (283)
|.|++++|.--=+|+..|+. -..|++++++|++-+..+.+.|..|+.++
T Consensus 53 R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~ 132 (148)
T 3gpv_A 53 RIFNEEALKYLEMILCLKNTGMPIQKIKQFIDWSMEGDSTILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEI 132 (148)
T ss_dssp EEBCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred eecCHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55688888877778777655 23466777777777788888888888765
No 28
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=49.05 E-value=6.8 Score=28.47 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy17484 254 NMGLRQEMERLKKENLSLRDKLSKFTD 280 (283)
Q Consensus 254 NaaLRqEVa~LRKElgr~rniLsKYE~ 280 (283)
..-|..+|..|+.|+..++.-+.....
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666665555433
No 29
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=48.13 E-value=3.7 Score=31.01 Aligned_cols=22 Identities=41% Similarity=0.401 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy17484 256 GLRQEMERLKKENLSLRDKLSK 277 (283)
Q Consensus 256 aLRqEVa~LRKElgr~rniLsK 277 (283)
.||.+|..||.|+++-|-.+|+
T Consensus 21 ~lr~~veqLr~el~~~RikVS~ 42 (73)
T 1got_G 21 KLKMEVDQLKKEVTLERMLVSK 42 (73)
T ss_dssp HHHHHHHHHHHHTTCCCCCHHH
T ss_pred HHHHHHHHHHHHHCCchhhHHH
Confidence 7899999999998877766665
No 30
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=47.82 E-value=11 Score=30.12 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=18.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHH
Q psy17484 248 KKSRKQNMGLRQEMERLKKENLS 270 (283)
Q Consensus 248 KKARKvNaaLRqEVa~LRKElgr 270 (283)
-|+++++..|++=+..||||+|+
T Consensus 74 ~Ka~~~~~el~~~I~~LrqEl~~ 96 (98)
T 4fm3_A 74 QKSKDQLGELDKSLKRLRKQLGE 96 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 46677788899999999999986
No 31
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=47.22 E-value=6.3 Score=29.50 Aligned_cols=18 Identities=39% Similarity=0.425 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy17484 254 NMGLRQEMERLKKENLSL 271 (283)
Q Consensus 254 NaaLRqEVa~LRKElgr~ 271 (283)
|..||++|..|+.||..|
T Consensus 52 n~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 52 NDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 555555555555555544
No 32
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=46.95 E-value=9.4 Score=24.85 Aligned_cols=16 Identities=38% Similarity=0.410 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHH
Q psy17484 254 NMGLRQEMERLKKENL 269 (283)
Q Consensus 254 NaaLRqEVa~LRKElg 269 (283)
|-.|.||||.|.-|+|
T Consensus 17 nyqleqevaqlehecg 32 (33)
T 1fmh_A 17 NYQLEQEVAQLEHECG 32 (33)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HhHHHHHHHHHHHhcC
Confidence 8899999999999887
No 33
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=45.99 E-value=12 Score=24.91 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHHHH
Q psy17484 254 NMGLRQEMERLKKE 267 (283)
Q Consensus 254 NaaLRqEVa~LRKE 267 (283)
|..|.+||+.||+=
T Consensus 17 n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 17 LYHIENELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 77777777776653
No 34
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=45.12 E-value=12 Score=24.85 Aligned_cols=16 Identities=25% Similarity=0.191 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHH
Q psy17484 254 NMGLRQEMERLKKENL 269 (283)
Q Consensus 254 NaaLRqEVa~LRKElg 269 (283)
|..|..||+.||+=|+
T Consensus 17 ~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 17 GHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHhc
Confidence 8888888888876544
No 35
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=44.62 E-value=14 Score=24.47 Aligned_cols=15 Identities=13% Similarity=0.142 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHH
Q psy17484 254 NMGLRQEMERLKKEN 268 (283)
Q Consensus 254 NaaLRqEVa~LRKEl 268 (283)
|..|.+||+.||.=|
T Consensus 16 ~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 16 XYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 778888888777544
No 36
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=43.60 E-value=30 Score=25.03 Aligned_cols=17 Identities=41% Similarity=0.362 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy17484 254 NMGLRQEMERLKKENLS 270 (283)
Q Consensus 254 NaaLRqEVa~LRKElgr 270 (283)
|+.|+.||+.||++++.
T Consensus 46 N~~L~~ev~~Lr~~l~~ 62 (63)
T 2dgc_A 46 NYHLENEVARLKKLVGE 62 (63)
T ss_dssp HHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999988763
No 37
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=42.96 E-value=17 Score=25.30 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy17484 255 MGLRQEMERLKKENLSLRDKL 275 (283)
Q Consensus 255 aaLRqEVa~LRKElgr~rniL 275 (283)
+||..|+..|.|.|..+|..|
T Consensus 23 aaleselqalekklaalkskl 43 (48)
T 1g6u_A 23 AALESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777776554
No 38
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=42.88 E-value=27 Score=26.49 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q psy17484 254 NMGLRQEMERLKKENLSLRDKLSKFTDLLS 283 (283)
Q Consensus 254 NaaLRqEVa~LRKElgr~rniLsKYE~~~~ 283 (283)
...|-.++.+...|+..+++.|.||+.|+.
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLDKfrSVl~ 71 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELDKYRSVIR 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 677888889999999999999999999873
No 39
>2yfv_C SCM3, KLLA0F05115P; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140}
Probab=42.40 E-value=20 Score=26.68 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=15.1
Q ss_pred HHHHHHHHHH-----HHHHHHHhhhhcc
Q psy17484 259 QEMERLKKEN-----LSLRDKLSKFTDL 281 (283)
Q Consensus 259 qEVa~LRKEl-----gr~rniLsKYE~~ 281 (283)
.||.+.||.. ....+|++||+++
T Consensus 21 eevme~hk~adermK~~w~~Ii~KY~~~ 48 (63)
T 2yfv_C 21 EEVMERHKKADENMKRVWSQIIQKYESI 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3555555552 3467899999974
No 40
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=41.08 E-value=15 Score=29.82 Aligned_cols=49 Identities=16% Similarity=0.323 Sum_probs=32.7
Q ss_pred CCCCCccccCCcchhhhhhhh-------------------------------hhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy17484 233 SRTFSDEELKPQPMVKKSRKQ-------------------------------NMGLRQEMERLKKENLSLRDKLSKFTDL 281 (283)
Q Consensus 233 khkFSEEELKPQPMIKKARKv-------------------------------NaaLRqEVa~LRKElgr~rniLsKYE~~ 281 (283)
.|.|++++|.---+|+..|+. -..|++++++|++-+..+...|..|+..
T Consensus 38 ~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 117 (142)
T 3gp4_A 38 VRKFGAEDLRWILFTRQMRRAGLSIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTH 117 (142)
T ss_dssp CBCBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CeeeCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999888888888765 2344555555555566666666666654
No 41
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=39.51 E-value=36 Score=26.51 Aligned_cols=51 Identities=33% Similarity=0.375 Sum_probs=19.0
Q ss_pred CCCCCCCCCCCcccc--CCcchh-------hhhhhh-------hhHHH-------HHHHHHHHHHHHHHHHHhh
Q psy17484 227 RDFDPRSRTFSDEEL--KPQPMV-------KKSRKQ-------NMGLR-------QEMERLKKENLSLRDKLSK 277 (283)
Q Consensus 227 E~FDPRkhkFSEEEL--KPQPMI-------KKARKv-------NaaLR-------qEVa~LRKElgr~rniLsK 277 (283)
++-|+-+.++..++| +..|=. -+.||. |.-|+ .|++.||+||..+|++...
T Consensus 5 ~~~~~~~~~ieaeDL~~~e~Pse~YWk~lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 5 ENKNLGGVTQESFDLMIKENPSSQYWKEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp ------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCccccchhHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666777777 333322 233333 55555 5666677777777776554
No 42
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=38.26 E-value=29 Score=27.21 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy17484 256 GLRQEMERLKKENLSLRDKLS 276 (283)
Q Consensus 256 aLRqEVa~LRKElgr~rniLs 276 (283)
.|++|.+.+++|+..+|..+.
T Consensus 66 ~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 66 QLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666655543
No 43
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=37.93 E-value=30 Score=26.76 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=13.1
Q ss_pred HHHHHHHHHHH----HHHHHHHHhhhhc
Q psy17484 257 LRQEMERLKKE----NLSLRDKLSKFTD 280 (283)
Q Consensus 257 LRqEVa~LRKE----lgr~rniLsKYE~ 280 (283)
|++|...||.| -.|+|.+|.|.+.
T Consensus 53 L~~en~qLk~E~~~wq~Rl~~LLgk~e~ 80 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERLQALLGRMEE 80 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 44455555555 3456666666554
No 44
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=37.65 E-value=35 Score=23.98 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy17484 255 MGLRQEMERLKKENLSLRDKLSKFTDL 281 (283)
Q Consensus 255 aaLRqEVa~LRKElgr~rniLsKYE~~ 281 (283)
..|-.+|+.|.+|+..++.-|+.....
T Consensus 25 ~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 25 KSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666777777777777776665544
No 45
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=35.55 E-value=28 Score=27.85 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q psy17484 256 GLRQEMERLKKENLSLRDKLSKFTD 280 (283)
Q Consensus 256 aLRqEVa~LRKElgr~rniLsKYE~ 280 (283)
..+++|..||.|+-++|..|.+-|.
T Consensus 72 ~~~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5689999999999999999987653
No 46
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=34.49 E-value=38 Score=24.46 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q psy17484 256 GLRQEMERLKKENLSLRDKLSKFTD 280 (283)
Q Consensus 256 aLRqEVa~LRKElgr~rniLsKYE~ 280 (283)
+||.|---||+||..-..-|+|.|.
T Consensus 14 ~Lk~ENshLrrEL~dNS~~lskLE~ 38 (54)
T 1deb_A 14 ALKMENSNLRQELEDNSNHLTKLET 38 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHh
Confidence 4555555555555555555555543
No 47
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=32.23 E-value=58 Score=24.69 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Q psy17484 254 NMGLRQEMERLKKENLSLRDKLSKF 278 (283)
Q Consensus 254 NaaLRqEVa~LRKElgr~rniLsKY 278 (283)
|..|.+|+..||+++..++..|...
T Consensus 61 ~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 61 EQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999888754
No 48
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=31.89 E-value=48 Score=20.68 Aligned_cols=20 Identities=35% Similarity=0.537 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy17484 256 GLRQEMERLKKENLSLRDKL 275 (283)
Q Consensus 256 aLRqEVa~LRKElgr~rniL 275 (283)
.|+.||.+|+-|+..+|.-+
T Consensus 4 qlkdevgelkgevralkdev 23 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEV 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHH
Confidence 47788888888877766543
No 49
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=31.77 E-value=46 Score=20.92 Aligned_cols=19 Identities=37% Similarity=0.462 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy17484 254 NMGLRQEMERLKKENLSLR 272 (283)
Q Consensus 254 NaaLRqEVa~LRKElgr~r 272 (283)
|-||.|-+|.|++.+..+|
T Consensus 9 ndaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 9 NDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhc
Confidence 8899999999988776654
No 50
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=31.57 E-value=20 Score=27.22 Aligned_cols=22 Identities=5% Similarity=0.184 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhhhhccc
Q psy17484 261 MERLKKENLSLRDKLSKFTDLL 282 (283)
Q Consensus 261 Va~LRKElgr~rniLsKYE~~~ 282 (283)
|.++-+||.+||+-|.+-|..+
T Consensus 28 vgdiEqeLe~Ck~sIrrLE~ev 49 (72)
T 1k1f_A 28 VGDIEQELERAKASIRRLEQEV 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998877654
No 51
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=30.38 E-value=39 Score=26.93 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhccc
Q psy17484 255 MGLRQEMERLKKENLSLRDKLSKFTDLL 282 (283)
Q Consensus 255 aaLRqEVa~LRKElgr~rniLsKYE~~~ 282 (283)
..|++++...++|+..+|+.+...|..|
T Consensus 85 ~~l~~~~~~e~~~~~~L~~~i~~Le~el 112 (117)
T 3kin_B 85 EEWKKKYEKEKEKNKALKSVIQHLEVEL 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666667777777777776666543
No 52
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=29.86 E-value=51 Score=21.89 Aligned_cols=16 Identities=31% Similarity=0.268 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHHH
Q psy17484 254 NMGLRQEMERLKKENL 269 (283)
Q Consensus 254 NaaLRqEVa~LRKElg 269 (283)
|..|-+||+.||+=+|
T Consensus 17 ~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 17 NYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhc
Confidence 8888899988887654
No 53
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=29.78 E-value=66 Score=24.05 Aligned_cols=32 Identities=16% Similarity=0.409 Sum_probs=25.1
Q ss_pred chhhhhhhh-------hhHHHHHHHHHHHHHHHHHHHHh
Q psy17484 245 PMVKKSRKQ-------NMGLRQEMERLKKENLSLRDKLS 276 (283)
Q Consensus 245 PMIKKARKv-------NaaLRqEVa~LRKElgr~rniLs 276 (283)
-|++||..- |..|.+|...||+|+..++..|.
T Consensus 40 ~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 40 SLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666543 88899999999999998888775
No 54
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=29.62 E-value=50 Score=29.58 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy17484 254 NMGLRQEMERLKKENLSLRDKLSKFT 279 (283)
Q Consensus 254 NaaLRqEVa~LRKElgr~rniLsKYE 279 (283)
...|..|++.||+||..||+++..-+
T Consensus 124 ie~l~eEi~~LkeEn~eLkeLae~~q 149 (209)
T 2wvr_A 124 IEQKDNEIARLKKENKELAEVAEHVQ 149 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444667788899999998876543
No 55
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=29.23 E-value=62 Score=26.35 Aligned_cols=9 Identities=22% Similarity=0.438 Sum_probs=6.9
Q ss_pred chhhhhhhh
Q psy17484 245 PMVKKSRKQ 253 (283)
Q Consensus 245 PMIKKARKv 253 (283)
=+|.|||.|
T Consensus 65 dli~k~kqI 73 (132)
T 1ykh_B 65 DIILKTRQI 73 (132)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 367888888
No 56
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=28.34 E-value=46 Score=29.53 Aligned_cols=13 Identities=54% Similarity=0.754 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHH
Q psy17484 263 RLKKENLSLRDKL 275 (283)
Q Consensus 263 ~LRKElgr~rniL 275 (283)
+|++|+.|+|..|
T Consensus 47 ~l~~En~rLr~lL 59 (255)
T 2j5u_A 47 DLKKENKDLKESL 59 (255)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 3344556666554
No 57
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=27.85 E-value=51 Score=26.60 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q psy17484 257 LRQEMERLKKENLSLRDKLSKF 278 (283)
Q Consensus 257 LRqEVa~LRKElgr~rniLsKY 278 (283)
|.+|+.+|+||+.+++..+..|
T Consensus 37 l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 37 FFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555444
No 58
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=27.57 E-value=52 Score=24.48 Aligned_cols=26 Identities=38% Similarity=0.455 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy17484 255 MGLRQEMERLKKENLSLRDKLSKFTD 280 (283)
Q Consensus 255 aaLRqEVa~LRKElgr~rniLsKYE~ 280 (283)
..|+++|..|+.|+..++..+.....
T Consensus 53 ~~Lq~~~~~L~~e~~~L~~~~~~~~~ 78 (82)
T 1am9_A 53 RFLQHSNQKLKQENLSLRTAVHKSKS 78 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34677777777777777776665543
No 59
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=26.96 E-value=69 Score=26.81 Aligned_cols=8 Identities=25% Similarity=0.522 Sum_probs=6.6
Q ss_pred hhhhhhhh
Q psy17484 246 MVKKSRKQ 253 (283)
Q Consensus 246 MIKKARKv 253 (283)
+|.|||.|
T Consensus 66 li~kakqI 73 (151)
T 1yke_B 66 IILKTRQI 73 (151)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 68888888
No 60
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=26.57 E-value=31 Score=24.36 Aligned_cols=21 Identities=10% Similarity=0.123 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy17484 255 MGLRQEMERLKKENLSLRDKL 275 (283)
Q Consensus 255 aaLRqEVa~LRKElgr~rniL 275 (283)
.+|..|+++||+++.+++..|
T Consensus 37 ~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 37 EIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHhcC
No 61
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=26.34 E-value=63 Score=23.94 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy17484 254 NMGLRQEMERLKKENLSLRD 273 (283)
Q Consensus 254 NaaLRqEVa~LRKElgr~rn 273 (283)
..-|..++.+||+||-.+|-
T Consensus 18 ~eEL~~~L~elk~ELf~LR~ 37 (72)
T 3v2d_2 18 PVELEKLVREKKRELMELRF 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66788888888888776653
No 62
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=25.79 E-value=72 Score=22.66 Aligned_cols=27 Identities=19% Similarity=0.379 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy17484 254 NMGLRQEMERLKKENLSLRDKLSKFTD 280 (283)
Q Consensus 254 NaaLRqEVa~LRKElgr~rniLsKYE~ 280 (283)
..-|-++|..|.+|+..++..|+.++.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888999999998888888876654
No 63
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=25.68 E-value=16 Score=26.75 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy17484 256 GLRQEMERLKKENLSLRDK 274 (283)
Q Consensus 256 aLRqEVa~LRKElgr~rni 274 (283)
...+|+++||+||.+++.-
T Consensus 63 ~~~~ei~~L~~e~~~L~~e 81 (97)
T 2jn6_A 63 SEAEQIRQLKKENALQRAR 81 (97)
T ss_dssp HTHHHHHHHHHCGGGGGGT
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 3455666666666655543
No 64
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=25.40 E-value=60 Score=23.94 Aligned_cols=19 Identities=32% Similarity=0.364 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy17484 254 NMGLRQEMERLKKENLSLR 272 (283)
Q Consensus 254 NaaLRqEVa~LRKElgr~r 272 (283)
..-|..++.+||+||-.+|
T Consensus 14 ~~EL~~~l~elk~ELf~LR 32 (71)
T 1vq8_V 14 PAEREAELDDLKTELLNAR 32 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888776
No 65
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=24.96 E-value=91 Score=24.23 Aligned_cols=16 Identities=19% Similarity=0.138 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHHHHHH
Q psy17484 254 NMGLRQEMERLKKENL 269 (283)
Q Consensus 254 NaaLRqEVa~LRKElg 269 (283)
|+.|++|+.+||.=..
T Consensus 62 i~~lk~en~eL~elae 77 (83)
T 1uii_A 62 IARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666664333
No 66
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=24.40 E-value=47 Score=21.91 Aligned_cols=16 Identities=19% Similarity=-0.105 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHHHH
Q psy17484 254 NMGLRQEMERLKKENL 269 (283)
Q Consensus 254 NaaLRqEVa~LRKElg 269 (283)
|..|-+||+.||+=+|
T Consensus 16 ~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 16 IYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhc
Confidence 7777788887776443
No 67
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=24.38 E-value=38 Score=27.48 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=31.6
Q ss_pred CCCCCccccCCcchhhhhhhh----------------------------hhHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy17484 233 SRTFSDEELKPQPMVKKSRKQ----------------------------NMGLRQEMERLKKENLSLRDKLSKFTD 280 (283)
Q Consensus 233 khkFSEEELKPQPMIKKARKv----------------------------NaaLRqEVa~LRKElgr~rniLsKYE~ 280 (283)
.|.|++++|.--=+|+..|+. -..|++++++|++-+..+..++..|+.
T Consensus 40 ~R~Y~~~dl~~l~~I~~lr~~G~sl~~I~~~l~~~~~~~~~~~~~L~~q~~~L~~~i~~l~~~l~~l~~~i~~~~~ 115 (146)
T 3hh0_A 40 HRLYTKDDLYVLQQIQSFKHLGFSLGEIQNIILQRDIETEVFLRQMHFQREVLLAEQERIAKVLSHMDEMTKKFQK 115 (146)
T ss_dssp CEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHTSSEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CEeeCHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356799998877777777654 123555566666666666667776654
No 68
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=24.03 E-value=76 Score=24.60 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=19.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHH
Q psy17484 249 KSRKQNMGLRQEMERLKKENLSLR 272 (283)
Q Consensus 249 KARKvNaaLRqEVa~LRKElgr~r 272 (283)
-|.+.|..|..|+..||+++-.+|
T Consensus 49 eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 49 EAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345559999999999999988765
No 69
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=23.98 E-value=68 Score=25.13 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=14.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q psy17484 252 KQNMGLRQEMERLKKENLSLRD 273 (283)
Q Consensus 252 KvNaaLRqEVa~LRKElgr~rn 273 (283)
.....||+|+.++|.|+.+++.
T Consensus 14 ~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 14 DKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3355667777777777766653
No 70
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=23.71 E-value=53 Score=23.65 Aligned_cols=20 Identities=30% Similarity=0.346 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy17484 254 NMGLRQEMERLKKENLSLRD 273 (283)
Q Consensus 254 NaaLRqEVa~LRKElgr~rn 273 (283)
..-|..++.+||+||-.+|-
T Consensus 11 ~~EL~~~l~elk~Elf~LR~ 30 (63)
T 3r8s_Y 11 VEELNTELLNLLREQFNLRM 30 (63)
T ss_dssp HHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55678888888888777663
No 71
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=23.71 E-value=73 Score=22.44 Aligned_cols=26 Identities=12% Similarity=0.332 Sum_probs=18.0
Q ss_pred chhhhhhhh-----hhHHHHHHHHHHHHHHH
Q psy17484 245 PMVKKSRKQ-----NMGLRQEMERLKKENLS 270 (283)
Q Consensus 245 PMIKKARKv-----NaaLRqEVa~LRKElgr 270 (283)
-|||.||+. =++|..=+.+|.+|..+
T Consensus 15 ~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~~ 45 (48)
T 3v1a_A 15 SFIHQAKAAGRMDEVRTLQENLHQLMHEYFQ 45 (48)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHh
Confidence 378888887 45666666777777654
No 72
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=23.19 E-value=87 Score=20.76 Aligned_cols=16 Identities=19% Similarity=-0.039 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHH
Q psy17484 254 NMGLRQEMERLKKENL 269 (283)
Q Consensus 254 NaaLRqEVa~LRKElg 269 (283)
|..|-.||+.||+=||
T Consensus 17 ~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 17 LYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhc
Confidence 7777788887777655
No 73
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=22.71 E-value=58 Score=23.66 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy17484 254 NMGLRQEMERLKKENLSLR 272 (283)
Q Consensus 254 NaaLRqEVa~LRKElgr~r 272 (283)
..-|..++.+||+||-.+|
T Consensus 11 ~~EL~~~l~elk~ELf~LR 29 (66)
T 1r73_A 11 DEELKNLLEEKKRQLMELR 29 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567777777777776665
No 74
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=22.68 E-value=51 Score=21.26 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhh
Q psy17484 255 MGLRQEMERLKKENLSLRDKLSKFT 279 (283)
Q Consensus 255 aaLRqEVa~LRKElgr~rniLsKYE 279 (283)
+||.|-+|.|.+.+..|...++-.|
T Consensus 3 aaleqkiaaleqkcaaceqkiaale 27 (32)
T 4g1a_A 3 AALEQKIAALEQKCAACEQKIAALE 27 (32)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999998887655
No 75
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=22.45 E-value=44 Score=24.53 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=7.2
Q ss_pred hhHHHHHHHHHHHH
Q psy17484 254 NMGLRQEMERLKKE 267 (283)
Q Consensus 254 NaaLRqEVa~LRKE 267 (283)
|..|.+|+.+||+|
T Consensus 66 ~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 66 NHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 55555555555544
No 76
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.97 E-value=77 Score=23.47 Aligned_cols=20 Identities=10% Similarity=0.092 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy17484 254 NMGLRQEMERLKKENLSLRD 273 (283)
Q Consensus 254 NaaLRqEVa~LRKElgr~rn 273 (283)
..-|..++.+||+||-.+|-
T Consensus 11 ~~EL~~~L~elk~ELf~LR~ 30 (72)
T 3j21_W 11 IEEIDAKIRELRLQLAKERG 30 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777776653
No 77
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=21.93 E-value=94 Score=19.36 Aligned_cols=20 Identities=40% Similarity=0.527 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy17484 257 LRQEMERLKKENLSLRDKLS 276 (283)
Q Consensus 257 LRqEVa~LRKElgr~rniLs 276 (283)
|-.|+.+|...|.++|+.|.
T Consensus 6 lykeledlqerlrklrkklr 25 (27)
T 3twe_A 6 LYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 56788888888888877663
No 78
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=21.92 E-value=97 Score=20.42 Aligned_cols=14 Identities=50% Similarity=0.615 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHHH
Q psy17484 254 NMGLRQEMERLKKE 267 (283)
Q Consensus 254 NaaLRqEVa~LRKE 267 (283)
|..|++||+.||.=
T Consensus 16 n~~Le~EV~RLk~L 29 (33)
T 3m48_A 16 NWNLENEVARLKKL 29 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 66777777777653
No 79
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=21.51 E-value=63 Score=28.19 Aligned_cols=22 Identities=27% Similarity=0.178 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q psy17484 254 NMGLRQEMERLKKENLSLRDKL 275 (283)
Q Consensus 254 NaaLRqEVa~LRKElgr~rniL 275 (283)
|+.|+.++..|++|+.|++.=.
T Consensus 154 ~~~L~~~n~~LqkeNeRL~~E~ 175 (184)
T 3w03_C 154 IAENQAKNEHLQKENERLLRDW 175 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999988643
No 80
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=21.39 E-value=1e+02 Score=23.93 Aligned_cols=19 Identities=37% Similarity=0.433 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy17484 254 NMGLRQEMERLKKENLSLR 272 (283)
Q Consensus 254 NaaLRqEVa~LRKElgr~r 272 (283)
|.-|+++|..++.|+.++|
T Consensus 40 N~~Lh~~ie~~~eEi~~Lk 58 (83)
T 1wlq_A 40 NEKLHKEIEQKDSEIARLR 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777775555444444443
No 81
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=21.25 E-value=74 Score=22.40 Aligned_cols=17 Identities=18% Similarity=0.397 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy17484 261 MERLKKENLSLRDKLSK 277 (283)
Q Consensus 261 Va~LRKElgr~rniLsK 277 (283)
+|.||.|+.|+.|-++.
T Consensus 33 ianlrdeiarlenevas 49 (52)
T 3he5_B 33 IANLRDEIARLENEVAS 49 (52)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34455555555554443
No 82
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=21.14 E-value=75 Score=22.70 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy17484 254 NMGLRQEMERLKKENLSLRDKLSKFTD 280 (283)
Q Consensus 254 NaaLRqEVa~LRKElgr~rniLsKYE~ 280 (283)
...|-++|.+|.+|+..++..|+.-+.
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888888888888888888876554
No 83
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=21.01 E-value=85 Score=24.29 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy17484 255 MGLRQEMERLKKENLSLRDKLSKFTD 280 (283)
Q Consensus 255 aaLRqEVa~LRKElgr~rniLsKYE~ 280 (283)
..++.||..||.||...+.+|...+.
T Consensus 22 ~gv~~~i~~Lk~eL~~m~a~L~da~~ 47 (115)
T 3qfl_A 22 KGVKKNIEDLGKELESMNAALIKIGE 47 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999987654
No 84
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=20.78 E-value=86 Score=20.79 Aligned_cols=13 Identities=46% Similarity=0.549 Sum_probs=7.3
Q ss_pred hhHHHHHHHHHHH
Q psy17484 254 NMGLRQEMERLKK 266 (283)
Q Consensus 254 NaaLRqEVa~LRK 266 (283)
|..|.+||+.||.
T Consensus 17 n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 17 NXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHH
Confidence 5556666655543
No 85
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=20.74 E-value=46 Score=29.02 Aligned_cols=19 Identities=37% Similarity=0.417 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy17484 254 NMGLRQEMERLKKENLSLR 272 (283)
Q Consensus 254 NaaLRqEVa~LRKElgr~r 272 (283)
..-|.+++.+||+||-.+|
T Consensus 75 ~eEL~ekL~eLKkELFnLR 93 (173)
T 3bbo_Z 75 TEQLQEEVVDLKGELFMLR 93 (173)
T ss_dssp HHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666666666666665554
No 86
>2kzf_A RBFA, ribosome-binding factor A; JCSG, joint center structural genomics, PSI-biology, protein structure initiative; NMR {Thermotoga maritima}
Probab=20.68 E-value=40 Score=26.20 Aligned_cols=20 Identities=0% Similarity=-0.014 Sum_probs=16.7
Q ss_pred hhhhhhhHHHHHHHHHHHHH
Q psy17484 249 KSRKQNMGLRQEMERLKKEN 268 (283)
Q Consensus 249 KARKvNaaLRqEVa~LRKEl 268 (283)
++++|+..+|+||++++.|+
T Consensus 7 R~~Rv~~~i~~~ls~i~~ei 26 (106)
T 2kzf_A 7 RKAMLESEIQKLLMEALQQL 26 (106)
T ss_dssp TTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 66788999999999995554
No 87
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=20.44 E-value=73 Score=27.22 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy17484 254 NMGLRQEMERLKKENLSLRDKLSKFT 279 (283)
Q Consensus 254 NaaLRqEVa~LRKElgr~rniLsKYE 279 (283)
|..+++++..|++|+.++++.|..-+
T Consensus 63 ~~~~~~~I~~L~~El~~l~~ki~dLe 88 (152)
T 3a7p_A 63 DDALLNTLAILQKELKSKEQEIRRLK 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777777766666665544
Done!