RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17484
(283 letters)
>gnl|CDD|219737 pfam08172, CASP_C, CASP C terminal. This domain is the C-terminal
region of the CASP family of proteins. It is a Golgi
membrane protein which is thought to have a role in
vesicle transport.
Length = 245
Score = 43.2 bits (102), Expect = 5e-05
Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 170 LQNVTSTISGRLSPCGSSQASVMTKRERSPSPSEPMSPLT--ISPPSPADSTLSFTSSTR 227
L V IS R +S S T+R + S +SP + I P + S L +S R
Sbjct: 29 LATVQDEISNRRFNDNASMISGGTRRIPNRGGSGKLSPTSSIIGGPGGSSSILPIITSQR 88
Query: 228 D-FDPRSRTFSDEELKPQPMVKKSRKQNMGLRQEMERLKKENLSLRDK 274
D F R+ +EEL+ Q S LR+E+E LK +N+ L +K
Sbjct: 89 DRFRKRNTEL-EEELRKQNQTISS------LRRELESLKADNIKLYEK 129
>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper.
Length = 65
Score = 30.6 bits (70), Expect = 0.13
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 247 VKKSRKQNMGLRQEMERLKKENLSLRDKLSK 277
V++ +N L++E+ERL++E L+ +L +
Sbjct: 35 VEQLEAENERLKKEIERLRRELEKLKSELEE 65
>gnl|CDD|202972 pfam04325, DUF465, Protein of unknown function (DUF465). Family
members are found in small bacterial proteins, and also
in the heavy chains of eukaryotic myosin and kinesin, C
terminal of the motor domain (Myosin pfam00063, Kinesin
pfam00225). Members of this family may form coiled coil
structures.
Length = 48
Score = 30.1 bits (69), Expect = 0.13
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 259 QEMERLKKENLSLRDKLSK 277
E+ERLKKE L L+D++ +
Sbjct: 28 LELERLKKEKLRLKDEIYR 46
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 33.1 bits (76), Expect = 0.15
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 230 DPRSRTFSDEELKPQ-PMVKKSRKQNMGLRQEMERLKKENLSLRDKLSKF 278
+ R T ++ +K V++ ++N L++E+E LK+E L +L +F
Sbjct: 413 ERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERF 462
>gnl|CDD|182346 PRK10265, PRK10265, chaperone-modulator protein CbpM; Provisional.
Length = 101
Score = 30.1 bits (68), Expect = 0.36
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 257 LRQEMERLKKENLSLRDKLSKF 278
L E+ LK+EN LR +LS+F
Sbjct: 76 LLDEIAHLKQENRLLRQRLSRF 97
>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor. The Pfam entry
includes the basic region and the leucine zipper region.
Length = 64
Score = 28.8 bits (65), Expect = 0.48
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 247 VKKSRKQNMGLRQEMERLKKENLSLRDKLS 276
VK+ +N LR E+ERLKKE L+ +
Sbjct: 35 VKELEAENKTLRSELERLKKECAKLKSENE 64
>gnl|CDD|163064 TIGR02894, DNA_bind_RsfA, transcription factor, RsfA family. In a
subset of endospore-forming members of the Firmcutes,
members of this protein family are found, several to a
genome. Two very strongly conserved sequences regions
are separated by a highly variable linker region. Much
of the linker region was excised from the seed alignment
for this model. A characterized member is the
prespore-specific transcription RsfA from Bacillus
subtilis, previously called YwfN, which is controlled by
sigma factor F and seems to fine-tune expression of some
genes in the sigma-F regulon. A paralog in Bacillus
subtilis is designated YlbO [Regulatory functions, DNA
interactions, Cellular processes, Sporulation and
germination].
Length = 161
Score = 29.7 bits (67), Expect = 1.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 244 QPMVKKSRKQNMGLRQEMERLKKENLSLRDKLSKFTDLLS 283
P + +K+N L+ + E L+K N L +L K LS
Sbjct: 96 NPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLS 135
>gnl|CDD|224346 COG1429, CobN, Cobalamin biosynthesis protein CobN and related
Mg-chelatases [Coenzyme metabolism].
Length = 1388
Score = 30.5 bits (69), Expect = 1.1
Identities = 15/82 (18%), Positives = 23/82 (28%), Gaps = 8/82 (9%)
Query: 136 SDNGIPVDGNTSQTSTGGAPTPAANLTGGHTTTTLQNVTSTISGRLSPCGSSQASV---- 191
+ + S G + + T T + S G++ +
Sbjct: 1290 AAFAPASATPGAPESVGTTAV-STASSASSATVTGSDAGSGADSTGPSLGAAGSVTGAGE 1348
Query: 192 ---MTKRERSPSPSEPMSPLTI 210
MTK S S S MS I
Sbjct: 1349 GYEMTKEAVSGSESTGMSFSAI 1370
>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper.
Length = 54
Score = 27.6 bits (62), Expect = 1.3
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 247 VKKSRKQ----NMGLRQEMERLKKENLSLRDKLS 276
++SR++ L + ++ L++EN LR K+
Sbjct: 16 ARRSREKKKQREEELEERVKELEEENAQLRQKVE 49
>gnl|CDD|233185 TIGR00918, 2A060602, The Eukaryotic (Putative) Sterol Transporter
(EST) Family.
Length = 1145
Score = 29.8 bits (67), Expect = 1.8
Identities = 19/72 (26%), Positives = 25/72 (34%)
Query: 157 PAANLTGGHTTTTLQNVTSTISGRLSPCGSSQASVMTKRERSPSPSEPMSPLTISPPSPA 216
P A G ++ ST+ R +Q T RS +P PL+ P A
Sbjct: 585 PQAYADGSAPPVYSSHMQSTVQLRTEYDPGTQHYYTTNEPRSHLSVQPSDPLSCQSPDIA 644
Query: 217 DSTLSFTSSTRD 228
ST S D
Sbjct: 645 GSTRDLLSQFED 656
>gnl|CDD|220173 pfam09311, Rab5-bind, Rabaptin-like protein. Members of this
family are predominantly found in Rabaptin and allow for
binding to the GTPase Rab5. This interaction is
necessary and sufficient for Rab5-dependent recruitment
of Rabaptin5 to early endosomal membranes.
Length = 180
Score = 28.5 bits (64), Expect = 3.0
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Query: 246 MVKKSRKQNMGLRQEMERLKKENLSLRDKLSK 277
++ SR++ LR ++ RL++EN LR +L+
Sbjct: 19 ELEASRQK---LRAQLRRLQQENQWLRGELAL 47
>gnl|CDD|218693 pfam05687, DUF822, Plant protein of unknown function (DUF822).
This family consists of the N terminal regions of
several plant proteins of unknown function.
Length = 151
Score = 28.2 bits (63), Expect = 3.1
Identities = 22/75 (29%), Positives = 27/75 (36%), Gaps = 15/75 (20%)
Query: 142 VDGNTSQTSTGGAPTPAANLTGGHTTTTLQNVTSTISGRLSPCGSSQASVMTKRERSPSP 201
DG T + P G T SPC S Q S ++ SP P
Sbjct: 64 PDGTTYRKGC--KPLERMEGAGSSATA-------------SPCSSYQLSPVSSAFPSPVP 108
Query: 202 SEPMSPLTISPPSPA 216
S SP + S PSP+
Sbjct: 109 SYSASPASSSFPSPS 123
>gnl|CDD|216421 pfam01299, Lamp, Lysosome-associated membrane glycoprotein (Lamp).
Length = 305
Score = 28.9 bits (65), Expect = 3.3
Identities = 23/83 (27%), Positives = 27/83 (32%), Gaps = 9/83 (10%)
Query: 136 SDNGIPVDGNTSQTSTGGAPTPAANLTGGHTTTTLQNVT--STISGRLSPCGSSQASVMT 193
S NT+ P N+T TLQ T S + C + S T
Sbjct: 31 SSTDTKAPTNTTYRCVSSTTVPMTNVTVTLHDVTLQAYLSNGTFSKTETRCEADTPSPTT 90
Query: 194 KRERSPSPSEPMSPLTISPPSPA 216
SPSP T P SPA
Sbjct: 91 VATPSPSP-------TPVPSSPA 106
>gnl|CDD|227768 COG5481, COG5481, Uncharacterized conserved small protein
containing a coiled-coil domain [Function unknown].
Length = 67
Score = 26.7 bits (59), Expect = 3.6
Identities = 9/23 (39%), Positives = 18/23 (78%)
Query: 260 EMERLKKENLSLRDKLSKFTDLL 282
++R+KK+ L+L+DK++K D +
Sbjct: 39 RIQRMKKKKLALKDKITKLEDQI 61
>gnl|CDD|236388 PRK09133, PRK09133, hypothetical protein; Provisional.
Length = 472
Score = 28.8 bits (65), Expect = 3.8
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 17/63 (26%)
Query: 161 LTGGHTTTTL-QNVTSTISGRLSPCGSSQASVM---------------TKRERSPSPSEP 204
L GGH L Q T+ ++ R+ P G + +V + SPSP+ P
Sbjct: 326 LEGGHAENALPQRATANVNCRIFP-GDTIEAVRATLKQVVADPAIKITRIGDPSPSPASP 384
Query: 205 MSP 207
+ P
Sbjct: 385 LRP 387
>gnl|CDD|177555 PHA03193, PHA03193, tegument protein VP11/12; Provisional.
Length = 594
Score = 28.5 bits (63), Expect = 4.7
Identities = 13/74 (17%), Positives = 20/74 (27%), Gaps = 11/74 (14%)
Query: 162 TGGHTTTTLQN-----VTSTISGRLSPCGSSQASVMTKRERSP----SPSEPMSPLTISP 212
GG L N SG L P +QA + + + +E
Sbjct: 452 DGGEIHEALANNGQAIFPECFSGDLPP--IAQALLSADELPNDTTASTSNEMKGDAECPA 509
Query: 213 PSPADSTLSFTSST 226
A + L +
Sbjct: 510 AQDAAAILPASFQI 523
>gnl|CDD|143642 cd07882, RHD-n_TonEBP, N-terminal sub-domain of the Rel homology
domain (RHD) of tonicity-responsive enhancer binding
protein (TonEBP). Proteins containing the Rel homology
domain (RHD) are metazoan transcription factors. The RHD
is composed of two structural sub-domains; this model
characterizes the N-terminal RHD sub-domain of the
tonicity-responsive enhancer binding protein (TonEBP),
also called NFAT5. Mammalian TonEBP regulates the
expression of genes in response to tonicity. It plays a
pivotal role in urinary concentrating mechanisms in
kidney medulla, by triggering the accumulation of
osmolytes that enable renal medullary cells to tolerate
high levels of urea and salt.
Length = 161
Score = 27.9 bits (62), Expect = 4.8
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 13/68 (19%)
Query: 157 PAANLTGGHTTTTLQNVTSTISGRLSPCGSSQASVMTKRERSPS-------------PSE 203
P L G + LQ T SGR+ P G QA +T R +P P +
Sbjct: 35 PTVKLEGYNKPVVLQVFVGTDSGRVKPHGFYQACKVTGRNTTPCEEVDVEGTTVIEVPLD 94
Query: 204 PMSPLTIS 211
P + +TIS
Sbjct: 95 PTNNMTIS 102
>gnl|CDD|151980 pfam11544, Spc42p, Spindle pole body component Spc42p. Spc42p is a
42-kD component of the S.cerevisiae spindle body that
localises to the electron dense central region of the
SPB.Spc42p is a phosphoprotein which forms a polymeric
layer at the periphery of the SPB central plaque. This
functions during SPB duplication and also facilitates
the attachment of the SPB to the nuclear membrane.
Length = 74
Score = 26.3 bits (58), Expect = 5.3
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 7/37 (18%)
Query: 252 KQNMGL-------RQEMERLKKENLSLRDKLSKFTDL 281
KQN L ++E+ERL SLR KL K+T+L
Sbjct: 3 KQNKELNFKLREKQEEIERLNVLIGSLRAKLIKYTEL 39
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional.
Length = 331
Score = 28.1 bits (63), Expect = 5.9
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 137 DNGIPV-DGNTSQTSTGGAPTPAANLTGGHTTTTLQNVT---STISGRLSPCGSSQASVM 192
+P+ T+ +T AP + T ++ T + + + SQA+V
Sbjct: 159 GQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVD 218
Query: 193 TKRERSPSPSEPMSPLTISPPSPADS 218
T +P+ + + P P D
Sbjct: 219 TAATPAPAAP---ATPDGAAPLPTDQ 241
>gnl|CDD|220723 pfam10377, ATG11, Autophagy-related protein 11. The function of
this family is conflicting. In the fission yeast,
Schizosaccharomyces pombe, this protein has been shown
to interact with the telomere cap complex. However, in
budding yeast, Saccharomyces cerevisiae, this protein is
called ATG11 and is shown to be involved in autophagy.
Length = 128
Score = 26.9 bits (60), Expect = 7.1
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 232 RSRTFSDEELKPQPMVKKSRKQNMGLRQEMERLKKENLSLRD 273
+ F D E + KK +K+N RQ++ +L+KE ++ R+
Sbjct: 5 VIKRFKDVEQ----LAKKLQKENKSKRQKLHKLQKEKIAFRN 42
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 27.8 bits (62), Expect = 8.4
Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 9/103 (8%)
Query: 141 PVDGNTSQTSTGGAPTPAANLTGGHTTTT-------LQNVTSTISGRLSPCGSSQASVMT 193
P ++S +P+P++ +G ++ +S+ S S S A+V
Sbjct: 284 PASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSP 343
Query: 194 KRE--RSPSPSEPMSPLTISPPSPADSTLSFTSSTRDFDPRSR 234
RSPSPS P P S P SS R
Sbjct: 344 GPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPT 386
>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional.
Length = 318
Score = 27.2 bits (60), Expect = 9.6
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 3 KRERSPSPSEPMSPLTISPPSPADSRKTN 31
KR RS SPS P P P P +
Sbjct: 2 KRARSRSPSPPRRPSPPRPTPPRSPDASP 30
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.306 0.123 0.348
Gapped
Lambda K H
0.267 0.0630 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,655,541
Number of extensions: 1213601
Number of successful extensions: 1155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1132
Number of HSP's successfully gapped: 80
Length of query: 283
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 187
Effective length of database: 6,679,618
Effective search space: 1249088566
Effective search space used: 1249088566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 58 (26.3 bits)