RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17484
         (283 letters)



>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 79

 Score = 30.3 bits (68), Expect = 0.047
 Identities = 7/31 (22%), Positives = 17/31 (54%)

Query: 247 VKKSRKQNMGLRQEMERLKKENLSLRDKLSK 277
           +KK    +     ++++L++E   L+ +L K
Sbjct: 49  IKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79


>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 83

 Score = 29.1 bits (65), Expect = 0.13
 Identities = 7/30 (23%), Positives = 19/30 (63%)

Query: 247 VKKSRKQNMGLRQEMERLKKENLSLRDKLS 276
           ++  R++N   +Q+++ LK++N  L  ++ 
Sbjct: 49  IQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78


>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
           (Solanum tuberosum) [TaxId: 4113]}
          Length = 364

 Score = 31.1 bits (69), Expect = 0.13
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 214 SPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQNMGLRQEMERLKKEN 268
           SPA+S L  T ++  +  R R      +   P    S K+   L++ +   K++ 
Sbjct: 300 SPAESNLDETHNSLTYASRVR-----SIVNDPSKNVSSKEVARLKKLVSYWKEQA 349


>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
          Length = 354

 Score = 28.4 bits (62), Expect = 1.2
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 214 SPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQNMGLRQEMERLKKE 267
           SP+    + T ST  F  R++      +K +  V         L+Q + + K +
Sbjct: 307 SPSSYNDAETLSTLRFGMRAK-----SIKNKAKVNAELSPAE-LKQMLAKAKTQ 354


>d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas
           sp., sedolisin [TaxId: 306]}
          Length = 369

 Score = 27.6 bits (60), Expect = 1.7
 Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 122 YDSDLKYVDLDEFLSDNGIPVDGNTSQTSTGGAPTPAANLTGGHTTTTL 170
                   DL +F S NG+    NT    TG +    ++   G     L
Sbjct: 35  GGVSQTLQDLQQFTSANGLA-SVNTQTIQTGSSNGDYSDDQQGQGEWDL 82


>d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 181

 Score = 27.1 bits (60), Expect = 1.8
 Identities = 10/57 (17%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 228 DFDPRSRTFSDEELKPQPMVKKSRKQNMGLRQEME-RLKKENLSLRDKLSKFTDLLS 283
           ++D + +T  + E +   + K  +KQ   L ++M   L  +   +  K+ +  ++  
Sbjct: 34  EYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIELLNVTE 90


>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 88

 Score = 25.3 bits (55), Expect = 3.9
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 244 QPMVKKSRKQNMGLRQEMERLKKENLSLR 272
           Q   +K   +   LR+  E+LK +   L 
Sbjct: 58  QAEEQKLISEEDLLRKRREQLKHKLEQLG 86


>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762
           {Corynebacterium glutamicum [TaxId: 1718]}
          Length = 89

 Score = 25.2 bits (55), Expect = 4.0
 Identities = 6/24 (25%), Positives = 12/24 (50%)

Query: 249 KSRKQNMGLRQEMERLKKENLSLR 272
            +    +   +++ +LKKEN   R
Sbjct: 56  TTPSAAVSEAEQIRQLKKENALQR 79


>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
          Length = 80

 Score = 24.1 bits (52), Expect = 7.3
 Identities = 5/27 (18%), Positives = 11/27 (40%)

Query: 246 MVKKSRKQNMGLRQEMERLKKENLSLR 272
            ++  +  N  L+QE   L+      +
Sbjct: 51  YIRFLQHSNQKLKQENLSLRTAVHKSK 77



 Score = 24.1 bits (52), Expect = 8.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 246 MVKKSRKQNMGLRQEMERLKKENLSLRDKLSKFTDL 281
           +++K+      L+   ++LK+ENLSLR  + K   L
Sbjct: 44  VLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSKSL 79


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.306    0.123    0.348 

Gapped
Lambda     K      H
   0.267   0.0601    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 956,778
Number of extensions: 41099
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 13
Length of query: 283
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 199
Effective length of database: 1,254,276
Effective search space: 249600924
Effective search space used: 249600924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 52 (24.1 bits)