BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17485
(237 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NUC6|RC3H1_XENLA Probable E3 ubiquitin-protein ligase Roquin OS=Xenopus laevis
GN=rc3h1 PE=2 SV=1
Length = 1114
Score = 144 bits (362), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 69/81 (85%), Positives = 74/81 (91%)
Query: 39 VKVSKREGDSSLMQLKEEFRTYESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDASRK 98
KV+KR+ DSSLMQLKEEFRTYE+LRREHD+QIV+IA EAGLRIAPDQWSSLLYGD S K
Sbjct: 257 FKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAPDQWSSLLYGDQSHK 316
Query: 99 SHMQSIIDKLQNPQSFAQSVQ 119
SHMQSIIDKLQ P SFAQSVQ
Sbjct: 317 SHMQSIIDKLQTPASFAQSVQ 337
Score = 121 bits (303), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 75/102 (73%), Gaps = 17/102 (16%)
Query: 139 LRPVCTVQG---SNPTSCTLSRPMQRKLIGLINCQILEDEGRGRAMRAARSIGPQSKART 195
L+P+ T +G ++ T LSRPMQRKL+ L++CQ++E+EGR RAMRAARS+G
Sbjct: 112 LKPLSTARGVGLNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLG------- 164
Query: 196 PHRTSIGERAVTELNLQHQNPQQLSANLWAAVRARGCQFLGP 237
ER VTEL LQHQNPQQLS+NLWAAVRARGCQFLGP
Sbjct: 165 -------ERTVTELILQHQNPQQLSSNLWAAVRARGCQFLGP 199
>sp|Q4VGL6|RC3H1_MOUSE Probable E3 ubiquitin-protein ligase Roquin OS=Mus musculus
GN=Rc3h1 PE=1 SV=1
Length = 1130
Score = 144 bits (362), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 69/81 (85%), Positives = 74/81 (91%)
Query: 39 VKVSKREGDSSLMQLKEEFRTYESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDASRK 98
KV+KR+ DSSLMQLKEEFRTYE+LRREHD+QIV+IA EAGLRIAPDQWSSLLYGD S K
Sbjct: 255 FKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAPDQWSSLLYGDQSHK 314
Query: 99 SHMQSIIDKLQNPQSFAQSVQ 119
SHMQSIIDKLQ P SFAQSVQ
Sbjct: 315 SHMQSIIDKLQTPASFAQSVQ 335
Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/102 (59%), Positives = 75/102 (73%), Gaps = 17/102 (16%)
Query: 139 LRPVCTVQG---SNPTSCTLSRPMQRKLIGLINCQILEDEGRGRAMRAARSIGPQSKART 195
L+P+ + +G ++ T LSRPMQRKL+ L++CQ++E+EGR RAMRAARS+G
Sbjct: 110 LKPLSSARGVGLNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLG------- 162
Query: 196 PHRTSIGERAVTELNLQHQNPQQLSANLWAAVRARGCQFLGP 237
ER VTEL LQHQNPQQLS+NLWAAVRARGCQFLGP
Sbjct: 163 -------ERTVTELILQHQNPQQLSSNLWAAVRARGCQFLGP 197
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 19 NVTLDLDSIPVNFALLQLVGVKVSKREGDSSLMQLKEEFRTYESLRR 65
+ D++ +PVN ALLQLVG ++ +++ +L E+ + YE ++
Sbjct: 56 TINTDIELLPVNSALLQLVGAQIPEQQ-PITLCSGVEDTKHYEEAKK 101
>sp|Q5TC82|RC3H1_HUMAN Probable E3 ubiquitin-protein ligase Roquin OS=Homo sapiens
GN=RC3H1 PE=1 SV=1
Length = 1133
Score = 143 bits (361), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 69/81 (85%), Positives = 74/81 (91%)
Query: 39 VKVSKREGDSSLMQLKEEFRTYESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDASRK 98
KV+KR+ DSSLMQLKEEFRTYE+LRREHD+QIV+IA EAGLRIAPDQWSSLLYGD S K
Sbjct: 255 FKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAPDQWSSLLYGDQSHK 314
Query: 99 SHMQSIIDKLQNPQSFAQSVQ 119
SHMQSIIDKLQ P SFAQSVQ
Sbjct: 315 SHMQSIIDKLQTPASFAQSVQ 335
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/102 (59%), Positives = 75/102 (73%), Gaps = 17/102 (16%)
Query: 139 LRPVCTVQG---SNPTSCTLSRPMQRKLIGLINCQILEDEGRGRAMRAARSIGPQSKART 195
L+P+ + +G ++ T LSRPMQRKL+ L++CQ++E+EGR RAMRAARS+G
Sbjct: 110 LKPLSSARGVGLNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLG------- 162
Query: 196 PHRTSIGERAVTELNLQHQNPQQLSANLWAAVRARGCQFLGP 237
ER VTEL LQHQNPQQLS+NLWAAVRARGCQFLGP
Sbjct: 163 -------ERTVTELILQHQNPQQLSSNLWAAVRARGCQFLGP 197
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 19 NVTLDLDSIPVNFALLQLVGVKVSKREGDSSLMQLKEEFRTYESLRR 65
+ D++ +PVN ALLQLVG +V +++ +L E+ + YE ++
Sbjct: 56 TINTDIELLPVNSALLQLVGAQVPEQQ-PITLCSGVEDTKHYEEAKK 101
>sp|Q9HBD1|RC3H2_HUMAN RING finger and CCCH-type zinc finger domain-containing protein 2
OS=Homo sapiens GN=RC3H2 PE=1 SV=2
Length = 1191
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/80 (81%), Positives = 75/80 (93%)
Query: 40 KVSKREGDSSLMQLKEEFRTYESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDASRKS 99
KV+KR+ DSSLMQLKEEFR+YE+LRREHDAQIV IA EAGLRI+P+QWSSLLYGD + KS
Sbjct: 253 KVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQWSSLLYGDLAHKS 312
Query: 100 HMQSIIDKLQNPQSFAQSVQ 119
HMQSIIDKLQ+P+SFA+SVQ
Sbjct: 313 HMQSIIDKLQSPESFAKSVQ 332
Score = 120 bits (301), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/83 (71%), Positives = 65/83 (78%), Gaps = 14/83 (16%)
Query: 155 LSRPMQRKLIGLINCQILEDEGRGRAMRAARSIGPQSKARTPHRTSIGERAVTELNLQHQ 214
LSRPMQRKL+ L+NCQ++E+EGR RAMRAARS+G ER VTEL LQHQ
Sbjct: 126 LSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLG--------------ERTVTELILQHQ 171
Query: 215 NPQQLSANLWAAVRARGCQFLGP 237
NPQQLSANLWAAVRARGCQFLGP
Sbjct: 172 NPQQLSANLWAAVRARGCQFLGP 194
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 20 VTLDLDSIPVNFALLQLVGVKV 41
+ D+D +PVNFALLQLVG +V
Sbjct: 57 INTDIDVLPVNFALLQLVGAQV 78
>sp|P0C090|RC3H2_MOUSE RING finger and CCCH-type zinc finger domain-containing protein 2
OS=Mus musculus GN=Rc3h2 PE=2 SV=1
Length = 1187
Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/80 (81%), Positives = 75/80 (93%)
Query: 40 KVSKREGDSSLMQLKEEFRTYESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDASRKS 99
KV+KR+ DSSLMQLKEEFR+YE+LRREHDAQIV IA EAGLRI+P+QWSSLLYGD + KS
Sbjct: 253 KVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQWSSLLYGDLAHKS 312
Query: 100 HMQSIIDKLQNPQSFAQSVQ 119
HMQSIIDKLQ+P+SFA+SVQ
Sbjct: 313 HMQSIIDKLQSPESFAKSVQ 332
Score = 120 bits (301), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 59/83 (71%), Positives = 65/83 (78%), Gaps = 14/83 (16%)
Query: 155 LSRPMQRKLIGLINCQILEDEGRGRAMRAARSIGPQSKARTPHRTSIGERAVTELNLQHQ 214
LSRPMQRKL+ L+NCQ++E+EGR RAMRAARS+G ER VTEL LQHQ
Sbjct: 126 LSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLG--------------ERTVTELILQHQ 171
Query: 215 NPQQLSANLWAAVRARGCQFLGP 237
NPQQLSANLWAAVRARGCQFLGP
Sbjct: 172 NPQQLSANLWAAVRARGCQFLGP 194
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 20 VTLDLDSIPVNFALLQLVGVKV 41
+ D+D +PVNFALLQLVG +V
Sbjct: 57 INTDIDVLPVNFALLQLVGAQV 78
>sp|O45962|RLE1_CAEEL Regulation of longevity by E3 ubiquitin-protein ligase
OS=Caenorhabditis elegans GN=rle-1 PE=1 SV=4
Length = 952
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/80 (73%), Positives = 69/80 (86%)
Query: 40 KVSKREGDSSLMQLKEEFRTYESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDASRKS 99
V KR+G+SSLMQLKEEFRTYESLRREHD+QIV+IA E+GLRI PDQWS+LLY D S +S
Sbjct: 251 NVLKRDGESSLMQLKEEFRTYESLRREHDSQIVQIAFESGLRIGPDQWSALLYADQSHRS 310
Query: 100 HMQSIIDKLQNPQSFAQSVQ 119
HMQSIIDKLQ+ S+ Q V+
Sbjct: 311 HMQSIIDKLQSKNSYQQGVE 330
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 14/92 (15%)
Query: 146 QGSNPTSCTLSRPMQRKLIGLINCQILEDEGRGRAMRAARSIGPQSKARTPHRTSIGERA 205
+G +S +SR +QRK++ L+ Q E +GR + ++ R I ER
Sbjct: 115 RGGTVSSREISRTLQRKVLALLCYQWREVDGRLKTLKMCRGIS--------------ERV 160
Query: 206 VTELNLQHQNPQQLSANLWAAVRARGCQFLGP 237
+ E+ L Q+ +S+ LW+AVRARGCQFLGP
Sbjct: 161 MIEIILSIQSNTHVSSQLWSAVRARGCQFLGP 192
>sp|Q3IRB3|KTHY_NATPD Probable thymidylate kinase OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=tmk PE=3 SV=1
Length = 196
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 38 GVKVSKREGDSSLMQLKEEFRTYESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDASR 97
G V + GD+ L E F Y + +H +++V A EAG + D++S Y A +
Sbjct: 41 GSAVERSIGDADADPLAELF-LYTADHADHLSRVVRPALEAGEPVVSDRYSDSRY--AYQ 97
Query: 98 KSHMQSIIDKLQNPQSFAQSVQVSRTRSPSPSLYRSVEPAV 138
+ ++ +ID+ P ++ + V TR P +LY V P V
Sbjct: 98 GATLEGVIDE---PMAYVKRVHEPFTRPPDATLYFDVPPTV 135
>sp|Q13099|IFT88_HUMAN Intraflagellar transport protein 88 homolog OS=Homo sapiens
GN=IFT88 PE=2 SV=2
Length = 833
Score = 36.6 bits (83), Expect = 0.15, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 22/104 (21%)
Query: 105 IDKLQNPQSFAQSVQVSRTRSPSPSLYRSVEPAVLRPVCTVQGSNPTSCTLSRPMQRKLI 164
I++L+N +F Q+V+ S R P P + AV RP+ T GS +L+ + R +
Sbjct: 38 IEELENDAAFQQAVRTSHGRRP-PITAKISSTAVTRPIATGYGSK---TSLASSIGRPMT 93
Query: 165 GLINCQILEDEGRGRAMRAARSIG------------PQSKARTP 196
G I +G R M A R+ G P S++R P
Sbjct: 94 GAIQ------DGVTRPMTAVRAAGFTKAALRGSAFDPLSQSRGP 131
>sp|Q61371|IFT88_MOUSE Intraflagellar transport protein 88 homolog OS=Mus musculus
GN=Ift88 PE=1 SV=2
Length = 824
Score = 36.2 bits (82), Expect = 0.20, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 106 DKLQNPQSFAQSVQVSRTRSPSPSLYRSVEPAVLRPVCTVQGSNPTSCTLSRPMQRKLIG 165
++L+N F Q+V+ S R P P + AV RP+ T GS +L+ M R + G
Sbjct: 29 EELENDTGFQQAVRTSHGRRP-PVTAKIPSTAVSRPIATGYGSK---TSLTSSMGRPMTG 84
Query: 166 LINCQILEDEGRGRAMRAARSIG 188
I +G R M A R+ G
Sbjct: 85 TIQ------DGVARPMTAVRAAG 101
>sp|Q571H0|NPA1P_MOUSE Nucleolar pre-ribosomal-associated protein 1 OS=Mus musculus GN=Urb1
PE=2 SV=2
Length = 2274
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%)
Query: 188 GPQSKARTPHRTSIGERAVTELNLQHQNPQQLSANLWAAVRARGCQFLGP 237
G QS + H +S+G+ V L HQ+ Q S LW A RG L P
Sbjct: 1138 GTQSLGKERHLSSLGKTLVQLLASSHQDQLQSSELLWCAEYVRGLGALLP 1187
>sp|O61608|NOS_ANOST Nitric oxide synthase OS=Anopheles stephensi PE=2 SV=2
Length = 1247
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 71 IVEIATEAGLRIAPDQWSSLLYGDASRKSHMQSIIDKL---QNPQSFAQSVQVSRTRSPS 127
+VEI E G+ P + A+RK + II++L +P Q +QV + +
Sbjct: 845 LVEIMAE-GIDYEPGDHVGIF--PANRKEIVDGIIERLTGVNDPDEMLQ-LQVLKEKQTQ 900
Query: 128 PSLYRSVEPAVLRPVCTVQGSNPTSCTLSRPMQRKLIGLIN--CQILEDEGR 177
+Y+S EP PVCT++ ++ P R+L+ + C DE R
Sbjct: 901 NGVYKSWEPHERLPVCTLRTLLTRFLDITTPPTRQLLTYLASCCGDKADEER 952
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.130 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,032,385
Number of Sequences: 539616
Number of extensions: 2972366
Number of successful extensions: 8616
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 8589
Number of HSP's gapped (non-prelim): 27
length of query: 237
length of database: 191,569,459
effective HSP length: 114
effective length of query: 123
effective length of database: 130,053,235
effective search space: 15996547905
effective search space used: 15996547905
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)