Query psy17485
Match_columns 237
No_of_seqs 48 out of 50
Neff 2.1
Searched_HMMs 29240
Date Fri Aug 16 23:41:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17485.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17485hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ofk_A 3-methyladenine DNA gly 44.3 9.2 0.00031 32.2 1.7 22 216-237 138-159 (183)
2 2eqe_A Tumor necrosis factor, 25.4 16 0.00054 25.6 0.1 9 228-236 19-27 (48)
3 2lgx_A Fermitin family homolog 23.6 44 0.0015 26.7 2.4 29 9-37 16-56 (112)
4 1otk_A Protein PAAC, phenylace 22.7 47 0.0016 28.8 2.6 51 59-110 188-239 (249)
5 2jg6_A DNA-3-methyladenine gly 18.2 47 0.0016 28.0 1.6 21 217-237 139-159 (186)
6 3bu8_A Telomeric repeat-bindin 15.7 3.9E+02 0.013 23.5 6.8 19 113-131 129-147 (235)
7 2xl1_A Arginine attenuator pep 11.5 1.1E+02 0.0039 18.8 1.6 16 215-230 10-25 (26)
8 1pcf_A P15, transcriptional co 11.4 39 0.0013 24.1 -0.6 16 76-91 38-53 (66)
9 3nmd_A CGMP dependent protein 11.1 4.4E+02 0.015 19.3 5.0 25 50-74 35-59 (72)
10 3f1i_H Hepatocyte growth facto 11.0 1.9E+02 0.0065 22.6 3.1 18 60-77 81-98 (98)
No 1
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=44.26 E-value=9.2 Score=32.16 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHHhhcccccCC
Q psy17485 216 PQQLSANLWAAVRARGCQFLGP 237 (237)
Q Consensus 216 ~qqls~~LwaavRargCQflGP 237 (237)
.+.+|..||.+++.||-.|.||
T Consensus 138 ~t~~S~~lsk~LKkrGfkFvGp 159 (183)
T 2ofk_A 138 STPASDALAKALKKRGFKFVGT 159 (183)
T ss_dssp CCHHHHHHHHHHHHTTCCSCCH
T ss_pred CCHHHHHHHHHHHhCCCeecCh
Confidence 3568899999999999999998
No 2
>2eqe_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=25.36 E-value=16 Score=25.58 Aligned_cols=9 Identities=44% Similarity=1.257 Sum_probs=7.2
Q ss_pred HhhcccccC
Q psy17485 228 RARGCQFLG 236 (237)
Q Consensus 228 RargCQflG 236 (237)
|.-||+|+|
T Consensus 19 Rk~GC~fFG 27 (48)
T 2eqe_A 19 RKAGCVYFG 27 (48)
T ss_dssp SSTTCCSBC
T ss_pred hhcCCCccc
Confidence 556999998
No 3
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=23.58 E-value=44 Score=26.67 Aligned_cols=29 Identities=28% Similarity=0.651 Sum_probs=25.1
Q ss_pred CCCCcccccccccccCCc------------hhHHHHHHHHh
Q psy17485 9 PDGLSTDRFWNVTLDLDS------------IPVNFALLQLV 37 (237)
Q Consensus 9 ~dg~~~~~~~ni~~did~------------lpVnqaLlQls 37 (237)
.||.+.|-+||+++=++. +|+...++++|
T Consensus 16 ~~g~~~d~SWeL~V~V~d~~~~~~lrV~GdlHIGGvmLkLV 56 (112)
T 2lgx_A 16 PDGCYADGTWELSVHVTDVNRDVTLRVTGEVHIGGVMLKLV 56 (112)
T ss_dssp TTTSSSSSCCCEECCBTTTTBCCEECCCTTSCHHHHHHHHH
T ss_pred ccCccccCcEEEEEEEecCCccEEEEEeeccccccchhhhh
Confidence 578899999999988887 88888888888
No 4
>1otk_A Protein PAAC, phenylacetic acid degradation protein PAAC; structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: a.25.1.2 PDB: 3pvt_B* 3pvr_B* 3pvy_B* 3pw1_B* 3pw8_A* 3pwq_A
Probab=22.71 E-value=47 Score=28.75 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=39.7
Q ss_pred hHHHHhhhhhhHHHHHhhhhccccCcccchhhhcCCc-cccchhhhHHHhhcC
Q psy17485 59 TYESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDA-SRKSHMQSIIDKLQN 110 (237)
Q Consensus 59 ~Ye~lRrehDaqiV~iA~EsgLri~peQwS~llyGd~-~~~s~mqsIiDKlqs 110 (237)
+=+.||.+-++.++.+..++||.+-.+.|... .|.+ .|..||..++..+|.
T Consensus 188 ~~~~Lr~~w~~~v~~~l~~agL~~P~~~~~~~-ggr~G~Hte~l~~llaemq~ 239 (249)
T 1otk_A 188 DPRTLRAAWEAEVFAGINEATLNVPQEQAYRT-GGKKGLHTEHLGPMLAEMQY 239 (249)
T ss_dssp CGGGGHHHHHHHHHHHHHHTTCCCCCCCCCCC-CGGGTCCCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCCCccccC-CCCCCCCCcchhHHHHHHHH
Confidence 33668999999999999999999976666433 4665 588899988887743
No 5
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=18.21 E-value=47 Score=28.03 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHhhcccccCC
Q psy17485 217 QQLSANLWAAVRARGCQFLGP 237 (237)
Q Consensus 217 qqls~~LwaavRargCQflGP 237 (237)
+.+|..+-.+++.||-.|.||
T Consensus 139 t~~S~~lsKdLKkrGFkFvGp 159 (186)
T 2jg6_A 139 DDTATQLSKDLKQYGFKFLGP 159 (186)
T ss_dssp CHHHHHHHHHHHTTTCCSCCH
T ss_pred CHHHHHHHHHHHHCCCeeech
Confidence 457888999999999999998
No 6
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=15.66 E-value=3.9e+02 Score=23.54 Aligned_cols=19 Identities=5% Similarity=0.183 Sum_probs=11.7
Q ss_pred hHHHHHHHHhhcCCCCCcc
Q psy17485 113 SFAQSVQVSRTRSPSPSLY 131 (237)
Q Consensus 113 Sf~q~v~el~~~~~~~alY 131 (237)
.|.++.+.|++..++..-.
T Consensus 129 ~f~kA~eiLkr~~~~~~s~ 147 (235)
T 3bu8_A 129 EFEKASKILKKHMSKDPTT 147 (235)
T ss_dssp CHHHHHHHHHHHSTTCGGG
T ss_pred chHHHHHHHHHHhcCCCCc
Confidence 6776666666666655444
No 7
>2xl1_A Arginine attenuator peptide; translation, antibiotic, ribosome, cytomegalovirus; NMR {Neurospora crassa}
Probab=11.51 E-value=1.1e+02 Score=18.82 Aligned_cols=16 Identities=38% Similarity=0.650 Sum_probs=12.5
Q ss_pred ChhhHHHHHHHHHHhh
Q psy17485 215 NPQQLSANLWAAVRAR 230 (237)
Q Consensus 215 n~qqls~~LwaavRar 230 (237)
+..-||..||.|+.|.
T Consensus 10 sqdylsdhlwralna~ 25 (26)
T 2xl1_A 10 SQDYLSDHLWRALNAX 25 (26)
T ss_pred cHHHHHHHHHHHHhcc
Confidence 3456899999998764
No 8
>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A
Probab=11.44 E-value=39 Score=24.14 Aligned_cols=16 Identities=38% Similarity=0.877 Sum_probs=13.4
Q ss_pred hhhccccCcccchhhh
Q psy17485 76 TEAGLRIAPDQWSSLL 91 (237)
Q Consensus 76 ~EsgLri~peQwS~ll 91 (237)
-.-|..|.+|||+.+.
T Consensus 38 gkKGIsL~~~qw~~l~ 53 (66)
T 1pcf_A 38 GRKGISLNPEQWSQLK 53 (66)
T ss_dssp EEEEEEECHHHHHHHH
T ss_pred CccccccCHHHHHHHH
Confidence 3568999999999875
No 9
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=11.08 E-value=4.4e+02 Score=19.28 Aligned_cols=25 Identities=20% Similarity=0.082 Sum_probs=15.0
Q ss_pred hhhHHHHHHhHHHHhhhhhhHHHHH
Q psy17485 50 LMQLKEEFRTYESLRREHDAQIVEI 74 (237)
Q Consensus 50 Lmqlkee~r~Ye~lRrehDaqiV~i 74 (237)
|.+..+-++.+|.--.+.|+.|-++
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~L 59 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQML 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445666666666777666644
No 10
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=10.96 E-value=1.9e+02 Score=22.57 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=12.2
Q ss_pred HHHHhhhhhhHHHHHhhh
Q psy17485 60 YESLRREHDAQIVEIATE 77 (237)
Q Consensus 60 Ye~lRrehDaqiV~iA~E 77 (237)
-++||.+|-..+-+.|.|
T Consensus 81 LdaLR~eH~~Klrr~aee 98 (98)
T 3f1i_H 81 LSALREEHREKLRRAAEE 98 (98)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 356788887777666654
Done!