Query psy17485
Match_columns 237
No_of_seqs 48 out of 50
Neff 2.1
Searched_HMMs 13730
Date Fri Aug 16 23:41:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17485.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17485hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nkua_ a.96.1.4 (A:) 3-Methyl 61.2 6 0.00044 31.1 5.3 22 216-237 138-159 (187)
2 d1h1oa2 a.3.1.4 (A:94-183) Cyt 22.0 52 0.0038 22.0 4.1 55 7-75 30-84 (90)
3 d1otka_ a.25.1.2 (A:) Phenylac 15.2 42 0.003 26.8 2.6 50 61-111 190-240 (244)
4 d1ng7a_ a.178.1.1 (A:) Soluble 13.0 60 0.0044 21.8 2.5 31 16-61 5-38 (60)
5 d1h6pa_ a.146.1.1 (A:) TRF2 {H 12.5 1.6E+02 0.012 23.3 5.6 19 113-131 128-146 (203)
6 d2qalr1 a.4.8.1 (R:19-73) Ribo 12.4 1.3E+02 0.0092 19.0 4.0 22 153-188 26-47 (55)
7 d1h99a2 a.142.1.1 (A:169-275) 11.7 1.8E+02 0.013 18.8 4.7 65 17-86 21-94 (107)
8 d2pfxa1 a.152.1.3 (A:1-190) Un 10.7 60 0.0044 23.5 2.1 32 200-231 119-151 (190)
9 d1pcfa_ d.18.1.1 (A:) Transcri 9.9 23 0.0016 23.7 -0.6 17 75-91 37-53 (66)
10 d1sqda1 d.32.1.3 (A:14-180) 4- 9.3 47 0.0034 22.6 1.0 17 221-237 116-132 (167)
No 1
>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]}
Probab=61.20 E-value=6 Score=31.11 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=20.1
Q ss_pred hhhHHHHHHHHHHhhcccccCC
Q psy17485 216 PQQLSANLWAAVRARGCQFLGP 237 (237)
Q Consensus 216 ~qqls~~LwaavRargCQflGP 237 (237)
.+.+|..||..++.||-.|.||
T Consensus 138 ~t~~s~~lsk~LKk~GfkFvGp 159 (187)
T d1nkua_ 138 STPASDALSKALKKRGFKFVGT 159 (187)
T ss_dssp CCHHHHHHHHHHHHHTCCCCCH
T ss_pred CCHHHHHHHHHHHhcCCeecCh
Confidence 3578999999999999999998
No 2
>d1h1oa2 a.3.1.4 (A:94-183) Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 920]}
Probab=21.99 E-value=52 Score=21.96 Aligned_cols=55 Identities=22% Similarity=0.264 Sum_probs=36.4
Q ss_pred cCCCCCcccccccccccCCchhHHHHHHHHhccccccCCCCchhhhHHHHHHhHHHHhhhhhhHHHHHh
Q psy17485 7 SQPDGLSTDRFWNVTLDLDSIPVNFALLQLVGVKVSKREGDSSLMQLKEEFRTYESLRREHDAQIVEIA 75 (237)
Q Consensus 7 ~q~dg~~~~~~~ni~~did~lpVnqaLlQlscf~V~krd~~ssLmqlkee~r~Ye~lRrehDaqiV~iA 75 (237)
|-+||.....+-+ |.-.+..++.-|+.-|.-..|. +++|+ ...+.-.|.+|.+||
T Consensus 30 HG~~G~g~~~~P~----LaGq~~~Yl~~qL~~f~~g~R~--~~~M~--------~~a~~lsd~ei~~la 84 (90)
T d1h1oa2 30 HGSDGQGAGPFPR----LAGQRYGYIIQQLTYFHNGTRV--NTLMN--------QIAKNITVAQMKDVA 84 (90)
T ss_dssp HCTTSCCBTTBCC----CTTCCHHHHHHHHHHHHHTSSC--CHHHH--------HHHTTCCHHHHHHHH
T ss_pred CCCccCCCCCCCc----cCCCCHHHHHHHHHHHHcCCcC--chHHH--------HHHHhCCHHHHHHHH
Confidence 6678876554433 4478888999999999888775 35666 223334566666664
No 3
>d1otka_ a.25.1.2 (A:) Phenylacetic acid degradation protein PaaC {Escherichia coli [TaxId: 562]}
Probab=15.21 E-value=42 Score=26.77 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=38.8
Q ss_pred HHHhhhhhhHHHHHhhhhccccCcccchhhhcCCc-cccchhhhHHHhhcCc
Q psy17485 61 ESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDA-SRKSHMQSIIDKLQNP 111 (237)
Q Consensus 61 e~lRrehDaqiV~iA~EsgLri~peQwS~llyGd~-~~~s~mqsIiDKlqs~ 111 (237)
+.||.+-.+.|+++..++||.+..+.|... .|.. .|..||..+..-+|..
T Consensus 190 ~~Lr~~w~~~v~~vl~~agL~~P~~~~~~~-gGR~G~Hte~lg~lLaemQ~l 240 (244)
T d1otka_ 190 RTLRAAWEAEVFAGINEATLNVPQEQAYRT-GGKKGLHTEHLGPMLAEMQYL 240 (244)
T ss_dssp GGGHHHHHHHHHHHHHHTTCCCCCCCCCCC-CGGGTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCccccC-CCCCCccchhHHHHHHHHHhh
Confidence 457888899999999999999987777643 4553 6778988888777643
No 4
>d1ng7a_ a.178.1.1 (A:) Soluble domain of poliovirus core protein 3a {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
Probab=13.04 E-value=60 Score=21.81 Aligned_cols=31 Identities=35% Similarity=0.579 Sum_probs=21.5
Q ss_pred ccccccccCCchh---HHHHHHHHhccccccCCCCchhhhHHHHHHhHH
Q psy17485 16 RFWNVTLDLDSIP---VNFALLQLVGVKVSKREGDSSLMQLKEEFRTYE 61 (237)
Q Consensus 16 ~~~ni~~did~lp---VnqaLlQlscf~V~krd~~ssLmqlkee~r~Ye 61 (237)
.|+.+.+|++.-| .+.-||+.| +| ||+|.|=
T Consensus 5 ~yk~l~I~v~~tPpP~aI~DLLkSV---------DS------eEVReYC 38 (60)
T d1ng7a_ 5 QYKDLKIDIKTSPPPECINDLLQAV---------DS------QEVRDYC 38 (60)
T ss_dssp CCCCCSCCCSCCCSSTTTHHHHHHH---------CC------HHHHHHH
T ss_pred cccceEeeeCCCCCChHHHHHHHhc---------Cc------HHHHHHH
Confidence 3677777777655 666777877 33 7888883
No 5
>d1h6pa_ a.146.1.1 (A:) TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.53 E-value=1.6e+02 Score=23.32 Aligned_cols=19 Identities=5% Similarity=0.183 Sum_probs=9.2
Q ss_pred hHHHHHHHHhhcCCCCCcc
Q psy17485 113 SFAQSVQVSRTRSPSPSLY 131 (237)
Q Consensus 113 Sf~q~v~el~~~~~~~alY 131 (237)
.|.++.+-|.+..+++.-.
T Consensus 128 ~Fk~A~eil~r~f~~~~~~ 146 (203)
T d1h6pa_ 128 EFEKASKILKKHMSKDPTT 146 (203)
T ss_dssp CHHHHHHHHHHHC------
T ss_pred chHHHHHHHHHHhcCCCCC
Confidence 6777777676666655544
No 6
>d2qalr1 a.4.8.1 (R:19-73) Ribosomal protein S18 {Escherichia coli [TaxId: 562]}
Probab=12.38 E-value=1.3e+02 Score=19.00 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=17.7
Q ss_pred CCCChhHHHHHHHHhhhhhccccchhHHHHHHHhcC
Q psy17485 153 CTLSRPMQRKLIGLINCQILEDEGRGRAMRAARSIG 188 (237)
Q Consensus 153 ~~lsrpmqrKlv~L~~cql~e~eGr~ra~raar~~~ 188 (237)
..++...|||+. +|++.||.+|
T Consensus 26 Tgl~~k~Qr~l~--------------~aIkrAR~~g 47 (55)
T d2qalr1 26 TGTRAKYQRQLA--------------RAIKRARYLS 47 (55)
T ss_dssp TCCCHHHHHHHH--------------HHHHHHHHTT
T ss_pred CCCCHHHHHHHH--------------HHHHHHHHhc
Confidence 458899999984 7888999865
No 7
>d1h99a2 a.142.1.1 (A:169-275) Transcriptional antiterminator LicT {Bacillus subtilis [TaxId: 1423]}
Probab=11.71 E-value=1.8e+02 Score=18.77 Aligned_cols=65 Identities=20% Similarity=0.348 Sum_probs=34.4
Q ss_pred cccccccCCch-------hHHHHHHHHhccccccCCCCchh-hhHHHHH-HhHHHHhhhhhhHHHHHhhhhccccCccc
Q psy17485 17 FWNVTLDLDSI-------PVNFALLQLVGVKVSKREGDSSL-MQLKEEF-RTYESLRREHDAQIVEIATEAGLRIAPDQ 86 (237)
Q Consensus 17 ~~ni~~did~l-------pVnqaLlQlscf~V~krd~~ssL-mqlkee~-r~Ye~lRrehDaqiV~iA~EsgLri~peQ 86 (237)
..|+.+|-|++ |+..++.|+-..... .+.+.+| -.+|++| +.|+.... -.-.+-...|..++.|+
T Consensus 21 ~~~i~~~~ds~~y~rl~~HL~~~i~R~~~~~~~-~~~~n~l~~~ik~~yp~~~~~a~~----i~~~i~~~~~~~i~~~E 94 (107)
T d1h99a2 21 HFKIEFNEESLHYYRFVTDLKFFAQRLFNGTHM-ESEDDFLLDTVKEKYHRAYECTKK----IQTYIEREYEHKLTSDE 94 (107)
T ss_dssp HHTCCCCTTSHHHHHHHHHHHHHHHHHHHTCCC-C--CTHHHHHHHHHTHHHHHHHHH----HHHHHHHHHCCCCCHHH
T ss_pred HHCCCcCcchHHHHHHHHHHHHHHHHHHhcCcc-ccCCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCCCCHHH
Confidence 34677777766 888888888754433 2333444 3445544 23443322 12223455677776554
No 8
>d2pfxa1 a.152.1.3 (A:1-190) Uncharacterized protein TM1040_2465 {Silicibacter sp. tm1040 [TaxId: 292414]}
Probab=10.74 E-value=60 Score=23.51 Aligned_cols=32 Identities=9% Similarity=0.252 Sum_probs=25.8
Q ss_pred chhHHHHHHHHHhc-cChhhHHHHHHHHHHhhc
Q psy17485 200 SIGERAVTELNLQH-QNPQQLSANLWAAVRARG 231 (237)
Q Consensus 200 slgER~~~Elil~h-qn~qqls~~LwaavRarg 231 (237)
+=-||++.++--.- .+|..++..+|+++|+.|
T Consensus 119 ~~~e~all~~a~~l~~~~~~v~d~~~~~L~~~G 151 (190)
T d2pfxa1 119 DARQRVMLDFAAKMTRASAEIEEADREVLRSHG 151 (190)
T ss_dssp CHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHCC
Confidence 44677887776664 588899999999999987
No 9
>d1pcfa_ d.18.1.1 (A:) Transcriptional coactivator PC4 C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.92 E-value=23 Score=23.74 Aligned_cols=17 Identities=35% Similarity=0.831 Sum_probs=13.8
Q ss_pred hhhhccccCcccchhhh
Q psy17485 75 ATEAGLRIAPDQWSSLL 91 (237)
Q Consensus 75 A~EsgLri~peQwS~ll 91 (237)
+-.-|..|.+|||+.+.
T Consensus 37 PgkKGIsL~~~qw~~l~ 53 (66)
T d1pcfa_ 37 PGRKGISLNPEQWSQLK 53 (66)
T ss_dssp EEEEEEEECHHHHHHHH
T ss_pred CCCCeEEECHHHHHHHH
Confidence 34568999999999885
No 10
>d1sqda1 d.32.1.3 (A:14-180) 4-hydroxyphenylpyruvate dioxygenase, HppD {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=9.33 E-value=47 Score=22.65 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=12.5
Q ss_pred HHHHHHHHhhcccccCC
Q psy17485 221 ANLWAAVRARGCQFLGP 237 (237)
Q Consensus 221 ~~LwaavRargCQflGP 237 (237)
...++.++++||.|++|
T Consensus 116 ~aa~~~l~~~G~~~~~~ 132 (167)
T d1sqda1 116 ESAFSISVANGAIPSSP 132 (167)
T ss_dssp HHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHCCCEEecC
Confidence 45677788888888764
Done!