Your job contains 1 sequence.
>psy17485
MSPYLVSQPDGLSTDRFWNVTLDLDSIPVNFALLQLVGVKVSKREGDSSLMQLKEEFRTY
ESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDASRKSHMQSIIDKLQNPQSFAQSVQV
SRTRSPSPSLYRSVEPAVLRPVCTVQGSNPTSCTLSRPMQRKLIGLINCQILEDEGRGRA
MRAARSIGPQSKARTPHRTSIGERAVTELNLQHQNPQQLSANLWAAVRARGCQFLGP
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy17485
(237 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1NZ02 - symbol:RC3H2 "Uncharacterized protein"... 335 5.9e-34 2
FB|FBgn0036621 - symbol:roq "roquin" species:7227 "Drosop... 362 3.2e-32 1
UNIPROTKB|Q5TC82 - symbol:RC3H1 "Probable E3 ubiquitin-pr... 351 1.2e-31 2
UNIPROTKB|I3L965 - symbol:I3L965 "Uncharacterized protein... 280 2.3e-31 2
MGI|MGI:2685397 - symbol:Rc3h1 "RING CCCH (C3H) domains 1... 351 9.2e-31 1
RGD|1563512 - symbol:Rc3h1 "ring finger and CCCH-type dom... 351 9.2e-31 1
UNIPROTKB|E2RGN7 - symbol:RC3H1 "Uncharacterized protein"... 351 9.3e-31 1
UNIPROTKB|E1BZI9 - symbol:RC3H1 "Uncharacterized protein"... 351 9.3e-31 1
UNIPROTKB|F1S727 - symbol:RC3H1 "Uncharacterized protein"... 351 9.3e-31 1
UNIPROTKB|J9P406 - symbol:J9P406 "Uncharacterized protein... 335 1.3e-30 2
ZFIN|ZDB-GENE-060503-694 - symbol:rc3h2 "ring finger and ... 339 1.8e-30 2
ZFIN|ZDB-GENE-050208-702 - symbol:rc3h1 "ring finger and ... 347 2.3e-30 1
ZFIN|ZDB-GENE-060503-79 - symbol:si:dkey-60b12.1 "si:dkey... 347 2.4e-30 1
UNIPROTKB|A6NHN2 - symbol:RC3H2 "RING finger and CCCH-typ... 335 3.6e-30 1
UNIPROTKB|Q4VXB0 - symbol:RC3H2 "RING finger and CCCH-typ... 335 3.4e-29 1
MGI|MGI:2442789 - symbol:Rc3h2 "ring finger and CCCH-type... 335 5.1e-29 1
RGD|1304833 - symbol:Rc3h2 "ring finger and CCCH-type dom... 335 5.1e-29 1
UNIPROTKB|Q9HBD1 - symbol:RC3H2 "RING finger and CCCH-typ... 335 5.2e-29 1
UNIPROTKB|E1BP22 - symbol:LOC538803 "Uncharacterized prot... 335 5.2e-29 1
UNIPROTKB|F1SKW1 - symbol:RC3H2 "Uncharacterized protein"... 335 5.2e-29 1
UNIPROTKB|F1NHN9 - symbol:RC3H1 "Uncharacterized protein"... 313 9.3e-28 1
WB|WBGene00010923 - symbol:rle-1 species:6239 "Caenorhabd... 308 2.7e-26 1
UNIPROTKB|O45962 - symbol:rle-1 "Regulation of longevity ... 308 2.7e-26 1
>UNIPROTKB|F1NZ02 [details] [associations]
symbol:RC3H2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0009986 "cell surface"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 Prosite:PS00518
GO:GO:0009986 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907
GeneTree:ENSGT00390000004311 OMA:CFSQPLP EMBL:AADN02026361
IPI:IPI00570958 Ensembl:ENSGALT00000001902 Uniprot:F1NZ02
Length = 1183
Score = 335 (123.0 bits), Expect = 5.9e-34, Sum P(2) = 5.9e-34
Identities = 65/80 (81%), Positives = 75/80 (93%)
Query: 40 KVSKREGDSSLMQLKEEFRTYESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDASRKS 99
KV+KR+ DSSLMQLKEEFR+YE+LRREHDAQIV IA EAGLRI+P+QWSSLLYGD + KS
Sbjct: 245 KVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQWSSLLYGDLAHKS 304
Query: 100 HMQSIIDKLQNPQSFAQSVQ 119
HMQSIIDKLQ+P+SFA+SVQ
Sbjct: 305 HMQSIIDKLQSPESFAKSVQ 324
Score = 280 (103.6 bits), Expect = 4.2e-28, Sum P(2) = 4.2e-28
Identities = 62/100 (62%), Positives = 73/100 (73%)
Query: 139 LRPVCTVQG-SNPTSCTLSRPMQRKLIGLINCQILEDEGRGRAMRAARSIGPQSKARTPH 197
L+P+ +G ++ LSRPMQRKL+ L+NCQ++E+EGR RAMRAARS+G
Sbjct: 101 LKPLSGGKGVASLNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLG--------- 151
Query: 198 RTSIGERAVTELNLQHQNPQQLSANLWAAVRARGCQFLGP 237
ER VTEL LQHQNPQQLSANLWAAVRARGCQFLGP
Sbjct: 152 -----ERTVTELILQHQNPQQLSANLWAAVRARGCQFLGP 186
Score = 75 (31.5 bits), Expect = 5.9e-34, Sum P(2) = 5.9e-34
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 20 VTLDLDSIPVNFALLQLVGVKV 41
+ D+D +PVNFALLQLVG +V
Sbjct: 49 INTDIDVLPVNFALLQLVGAQV 70
>FB|FBgn0036621 [details] [associations]
symbol:roq "roquin" species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50089 PROSITE:PS50103 SMART:SM00184
Prosite:PS00518 EMBL:AE014296 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 eggNOG:NOG320727 KO:K15690
GeneTree:ENSGT00390000004311 EMBL:BT021949 RefSeq:NP_648886.1
UniGene:Dm.11424 SMR:Q9VV48 MINT:MINT-778078 STRING:Q9VV48
EnsemblMetazoa:FBtr0075423 EnsemblMetazoa:FBtr0331173
EnsemblMetazoa:FBtr0333265 GeneID:39818 KEGG:dme:Dmel_CG16807
UCSC:CG16807-RA CTD:39818 FlyBase:FBgn0036621 InParanoid:Q9VV48
OMA:IALQRTS OrthoDB:EOG43BK3X ChiTaRS:roq GenomeRNAi:39818
NextBio:815541 Uniprot:Q9VV48
Length = 819
Score = 362 (132.5 bits), Expect = 3.2e-32, P = 3.2e-32
Identities = 85/149 (57%), Positives = 104/149 (69%)
Query: 40 KVSKREGDSSLMQLKEEFRTYESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDASRKS 99
KVSKRE DSSLMQLKEEFRTY++LRREHDAQIV+IATEAGLRIAP+QWSSLLYGD KS
Sbjct: 254 KVSKREADSSLMQLKEEFRTYDALRREHDAQIVQIATEAGLRIAPEQWSSLLYGDVMHKS 313
Query: 100 HMQSIIDKLQNPQSFAQSVQ-----VSRTRSPSP--SLYRSVEP-AVLRPVCTVQGSNPT 151
HMQSIIDKLQ P SFAQSVQ + RT P+ SL+ ++ A + P V +
Sbjct: 314 HMQSIIDKLQTPSSFAQSVQELVIALQRTSDPAKLSSLHHHLKYLANIDPCAEVAPWSVL 373
Query: 152 SCTLSRPMQRKLIGLINCQILEDEGRGRA 180
+ L ++ ++GL+N L+ G +A
Sbjct: 374 AEALDA-VRHSVVGLVN--FLQHHGVRKA 399
Score = 257 (95.5 bits), Expect = 6.6e-25, Sum P(2) = 6.6e-25
Identities = 54/83 (65%), Positives = 63/83 (75%)
Query: 155 LSRPMQRKLIGLINCQILEDEGRGRAMRAARSIGPQSKARTPHRTSIGERAVTELNLQHQ 214
L+RPM RKL+ L+NCQ++E+EGR RA+RAARS+G ER VTEL LQHQ
Sbjct: 127 LTRPMLRKLVTLVNCQLMEEEGRVRALRAARSLG--------------ERTVTELILQHQ 172
Query: 215 NPQQLSANLWAAVRARGCQFLGP 237
NPQQLS+NLWAAVR RGCQFLGP
Sbjct: 173 NPQQLSSNLWAAVRTRGCQFLGP 195
Score = 63 (27.2 bits), Expect = 6.6e-25, Sum P(2) = 6.6e-25
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 20 VTLDLDSIPVNFALLQLVGVKVSKREGDSSLMQLKEEFRTYESLRREH 67
+ D+D++P+N ALLQLV DS L++L + + L EH
Sbjct: 57 IVSDIDNLPINHALLQLVK--------DSELLELAPPPPSVQKLEPEH 96
>UNIPROTKB|Q5TC82 [details] [associations]
symbol:RC3H1 "Probable E3 ubiquitin-protein ligase Roquin"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=TAS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0050856 "regulation of T cell receptor signaling
pathway" evidence=ISS] [GO:0002634 "regulation of germinal center
formation" evidence=ISS] [GO:0045623 "negative regulation of
T-helper cell differentiation" evidence=ISS] [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISS] [GO:0003730 "mRNA
3'-UTR binding" evidence=ISS] [GO:0046007 "negative regulation of
activated T cell proliferation" evidence=ISS] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=ISS]
[GO:0030889 "negative regulation of B cell proliferation"
evidence=ISS] [GO:0010608 "posttranscriptional regulation of gene
expression" evidence=ISS] [GO:0002635 "negative regulation of
germinal center formation" evidence=ISS] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=ISS]
InterPro:IPR001841 InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 UniPathway:UPA00143 Prosite:PS00518
GO:GO:0046872 GO:GO:0008270 GO:GO:0003730 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0000932 GO:GO:0000956 GO:GO:0004842
EMBL:AL136170 GO:GO:0043488 InterPro:IPR017907 GO:GO:0030889
GO:GO:0010494 GO:GO:0033962 GO:GO:0050856 GO:GO:0046007
GO:GO:0002635 EMBL:AK093501 EMBL:AK122948 EMBL:AL121983
EMBL:AB095945 IPI:IPI00216992 IPI:IPI00640426 RefSeq:NP_742068.1
UniGene:Hs.30258 ProteinModelPortal:Q5TC82 SMR:Q5TC82 STRING:Q5TC82
PhosphoSite:Q5TC82 DMDM:73621450 PaxDb:Q5TC82 PRIDE:Q5TC82
Ensembl:ENST00000258349 Ensembl:ENST00000367694
Ensembl:ENST00000367696 GeneID:149041 KEGG:hsa:149041
UCSC:uc001gju.4 UCSC:uc001gjv.3 CTD:149041 GeneCards:GC01M173900
HGNC:HGNC:29434 HPA:HPA027428 HPA:HPA027434 HPA:HPA027448
MIM:609424 neXtProt:NX_Q5TC82 PharmGKB:PA142671090 eggNOG:NOG320727
HOVERGEN:HBG080524 InParanoid:Q5TC82 KO:K15690 OMA:TFDETIR
GenomeRNAi:149041 NextBio:86056 ArrayExpress:Q5TC82 Bgee:Q5TC82
CleanEx:HS_RC3H1 Genevestigator:Q5TC82 GermOnline:ENSG00000135870
GO:GO:0045623 Uniprot:Q5TC82
Length = 1133
Score = 351 (128.6 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
Identities = 72/100 (72%), Positives = 82/100 (82%)
Query: 40 KVSKREGDSSLMQLKEEFRTYESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDASRKS 99
KV+KR+ DSSLMQLKEEFRTYE+LRREHD+QIV+IA EAGLRIAPDQWSSLLYGD S KS
Sbjct: 256 KVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAPDQWSSLLYGDQSHKS 315
Query: 100 HMQSIIDKLQNPQSFAQSVQ---VSRTRSPSPSLYRSVEP 136
HMQSIIDKLQ P SFAQSVQ ++ R+ P+ + P
Sbjct: 316 HMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRP 355
Score = 280 (103.6 bits), Expect = 7.6e-28, Sum P(2) = 7.6e-28
Identities = 61/102 (59%), Positives = 75/102 (73%)
Query: 139 LRPVCTVQG---SNPTSCTLSRPMQRKLIGLINCQILEDEGRGRAMRAARSIGPQSKART 195
L+P+ + +G ++ T LSRPMQRKL+ L++CQ++E+EGR RAMRAARS+G
Sbjct: 110 LKPLSSARGVGLNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLG------- 162
Query: 196 PHRTSIGERAVTELNLQHQNPQQLSANLWAAVRARGCQFLGP 237
ER VTEL LQHQNPQQLS+NLWAAVRARGCQFLGP
Sbjct: 163 -------ERTVTELILQHQNPQQLSSNLWAAVRARGCQFLGP 197
Score = 72 (30.4 bits), Expect = 7.6e-28, Sum P(2) = 7.6e-28
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 20 VTLDLDSIPVNFALLQLVGVKVSKREGDSSLMQLKEEFRTYESLRR 65
+ D++ +PVN ALLQLVG +V +++ +L E+ + YE ++
Sbjct: 57 INTDIELLPVNSALLQLVGAQVPEQQ-PITLCSGVEDTKHYEEAKK 101
Score = 36 (17.7 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 150 PTSCTLSRPMQRKLIGLINCQILEDEG 176
P S +L Q +GL + IL DEG
Sbjct: 458 PLSASLG---QLNEVGLPSAAILPDEG 481
>UNIPROTKB|I3L965 [details] [associations]
symbol:I3L965 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 PROSITE:PS50089 SMART:SM00184 Prosite:PS00518
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 GeneTree:ENSGT00390000004311
Ensembl:ENSSSCT00000024596 OMA:VALINCQ Uniprot:I3L965
Length = 199
Score = 280 (103.6 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 62/100 (62%), Positives = 73/100 (73%)
Query: 139 LRPVCTVQG-SNPTSCTLSRPMQRKLIGLINCQILEDEGRGRAMRAARSIGPQSKARTPH 197
L+P+ +G ++ LSRPMQRKL+ L+NCQ++E+EGR RAMRAARS+G
Sbjct: 109 LKPLSGGKGVASLNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLG--------- 159
Query: 198 RTSIGERAVTELNLQHQNPQQLSANLWAAVRARGCQFLGP 237
ER VTEL LQHQNPQQLSANLWAAVRARGCQFLGP
Sbjct: 160 -----ERTVTELILQHQNPQQLSANLWAAVRARGCQFLGP 194
Score = 80 (33.2 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 20 VTLDLDSIPVNFALLQLVGVKVSKREGDSSLMQLKEEFRTYESLRR 65
+ D+D +PVNFALLQLVG +V + L L E + YE ++
Sbjct: 57 INTDIDVLPVNFALLQLVGAQVPDHQS-IKLSNLGEN-KNYEVAKK 100
>MGI|MGI:2685397 [details] [associations]
symbol:Rc3h1 "RING CCCH (C3H) domains 1" species:10090 "Mus
musculus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=IMP] [GO:0002634 "regulation of germinal center
formation" evidence=IMP] [GO:0002635 "negative regulation of
germinal center formation" evidence=IMP] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0010608
"posttranscriptional regulation of gene expression" evidence=IMP]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0030889 "negative
regulation of B cell proliferation" evidence=IMP] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IMP]
[GO:0043488 "regulation of mRNA stability" evidence=IMP]
[GO:0045623 "negative regulation of T-helper cell differentiation"
evidence=IMP] [GO:0046007 "negative regulation of activated T cell
proliferation" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0050856 "regulation of T cell receptor signaling
pathway" evidence=IMP] InterPro:IPR001841 InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50089 PROSITE:PS50103 SMART:SM00184
UniPathway:UPA00143 MGI:MGI:2685397 Prosite:PS00518 GO:GO:0046872
GO:GO:0008270 GO:GO:0003730 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0000932 GO:GO:0000956 GO:GO:0043488 InterPro:IPR017907
GO:GO:0030889 GO:GO:0010494 GO:GO:0033962 GO:GO:0050856
GO:GO:0046007 GO:GO:0002635 CTD:149041 eggNOG:NOG320727
HOVERGEN:HBG080524 KO:K15690 OMA:TFDETIR GO:GO:0045623
EMBL:AY948287 EMBL:AK173335 EMBL:BC138663 IPI:IPI00464101
RefSeq:NP_001020123.1 UniGene:Mm.329667 ProteinModelPortal:Q4VGL6
SMR:Q4VGL6 IntAct:Q4VGL6 STRING:Q4VGL6 PhosphoSite:Q4VGL6
PaxDb:Q4VGL6 PRIDE:Q4VGL6 DNASU:381305 Ensembl:ENSMUST00000161609
GeneID:381305 KEGG:mmu:381305 UCSC:uc007del.2
GeneTree:ENSGT00390000004311 HOGENOM:HOG000232030 InParanoid:B2RS13
OrthoDB:EOG4XD3Q9 NextBio:401858 Bgee:Q4VGL6 CleanEx:MM_RC3H1
Genevestigator:Q4VGL6 GermOnline:ENSMUSG00000040423 Uniprot:Q4VGL6
Length = 1130
Score = 351 (128.6 bits), Expect = 9.2e-31, P = 9.2e-31
Identities = 72/100 (72%), Positives = 82/100 (82%)
Query: 40 KVSKREGDSSLMQLKEEFRTYESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDASRKS 99
KV+KR+ DSSLMQLKEEFRTYE+LRREHD+QIV+IA EAGLRIAPDQWSSLLYGD S KS
Sbjct: 256 KVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAPDQWSSLLYGDQSHKS 315
Query: 100 HMQSIIDKLQNPQSFAQSVQ---VSRTRSPSPSLYRSVEP 136
HMQSIIDKLQ P SFAQSVQ ++ R+ P+ + P
Sbjct: 316 HMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRP 355
Score = 280 (103.6 bits), Expect = 9.6e-28, Sum P(2) = 9.6e-28
Identities = 61/102 (59%), Positives = 75/102 (73%)
Query: 139 LRPVCTVQG---SNPTSCTLSRPMQRKLIGLINCQILEDEGRGRAMRAARSIGPQSKART 195
L+P+ + +G ++ T LSRPMQRKL+ L++CQ++E+EGR RAMRAARS+G
Sbjct: 110 LKPLSSARGVGLNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLG------- 162
Query: 196 PHRTSIGERAVTELNLQHQNPQQLSANLWAAVRARGCQFLGP 237
ER VTEL LQHQNPQQLS+NLWAAVRARGCQFLGP
Sbjct: 163 -------ERTVTELILQHQNPQQLSSNLWAAVRARGCQFLGP 197
Score = 71 (30.1 bits), Expect = 9.6e-28, Sum P(2) = 9.6e-28
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 20 VTLDLDSIPVNFALLQLVGVKVSKREGDSSLMQLKEEFRTYESLRR 65
+ D++ +PVN ALLQLVG ++ +++ +L E+ + YE ++
Sbjct: 57 INTDIELLPVNSALLQLVGAQIPEQQ-PITLCSGVEDTKHYEEAKK 101
>RGD|1563512 [details] [associations]
symbol:Rc3h1 "ring finger and CCCH-type domains 1" species:10116
"Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=ISO] [GO:0002634 "regulation of germinal center
formation" evidence=ISO] [GO:0002635 "negative regulation of
germinal center formation" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISO] [GO:0010608 "posttranscriptional regulation
of gene expression" evidence=ISO] [GO:0030889 "negative regulation
of B cell proliferation" evidence=ISO] [GO:0033962 "cytoplasmic
mRNA processing body assembly" evidence=ISO] [GO:0043488
"regulation of mRNA stability" evidence=ISO] [GO:0045623 "negative
regulation of T-helper cell differentiation" evidence=ISO]
[GO:0046007 "negative regulation of activated T cell proliferation"
evidence=ISO] [GO:0050856 "regulation of T cell receptor signaling
pathway" evidence=ISO] InterPro:IPR001841 InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50089 PROSITE:PS50103 SMART:SM00184
RGD:1563512 Prosite:PS00518 GO:GO:0046872 GO:GO:0008270
GO:GO:0003730 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0000932
GO:GO:0000956 GO:GO:0043488 InterPro:IPR017907 GO:GO:0030889
GO:GO:0010494 GO:GO:0033962 GO:GO:0050856 GO:GO:0046007
GO:GO:0002635 GO:GO:0045623 GeneTree:ENSGT00390000004311
OrthoDB:EOG4XD3Q9 IPI:IPI00766672 Ensembl:ENSRNOT00000003689
Uniprot:D3ZKG8
Length = 1130
Score = 351 (128.6 bits), Expect = 9.2e-31, P = 9.2e-31
Identities = 72/100 (72%), Positives = 82/100 (82%)
Query: 40 KVSKREGDSSLMQLKEEFRTYESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDASRKS 99
KV+KR+ DSSLMQLKEEFRTYE+LRREHD+QIV+IA EAGLRIAPDQWSSLLYGD S KS
Sbjct: 256 KVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAPDQWSSLLYGDQSHKS 315
Query: 100 HMQSIIDKLQNPQSFAQSVQ---VSRTRSPSPSLYRSVEP 136
HMQSIIDKLQ P SFAQSVQ ++ R+ P+ + P
Sbjct: 316 HMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRP 355
Score = 280 (103.6 bits), Expect = 9.6e-28, Sum P(2) = 9.6e-28
Identities = 61/102 (59%), Positives = 75/102 (73%)
Query: 139 LRPVCTVQG---SNPTSCTLSRPMQRKLIGLINCQILEDEGRGRAMRAARSIGPQSKART 195
L+P+ + +G ++ T LSRPMQRKL+ L++CQ++E+EGR RAMRAARS+G
Sbjct: 110 LKPLSSARGVGLNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLG------- 162
Query: 196 PHRTSIGERAVTELNLQHQNPQQLSANLWAAVRARGCQFLGP 237
ER VTEL LQHQNPQQLS+NLWAAVRARGCQFLGP
Sbjct: 163 -------ERTVTELILQHQNPQQLSSNLWAAVRARGCQFLGP 197
Score = 71 (30.1 bits), Expect = 9.6e-28, Sum P(2) = 9.6e-28
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 20 VTLDLDSIPVNFALLQLVGVKVSKREGDSSLMQLKEEFRTYESLRR 65
+ D++ +PVN ALLQLVG ++ +++ +L E+ + YE ++
Sbjct: 57 INTDIELLPVNSALLQLVGAQIREQQ-PITLCSGVEDTKHYEEAKK 101
>UNIPROTKB|E2RGN7 [details] [associations]
symbol:RC3H1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50089 PROSITE:PS50103
SMART:SM00184 Prosite:PS00518 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 CTD:149041 KO:K15690 OMA:TFDETIR
GeneTree:ENSGT00390000004311 EMBL:AAEX03005203 RefSeq:XP_537186.2
Ensembl:ENSCAFT00000022951 GeneID:480065 KEGG:cfa:480065
Uniprot:E2RGN7
Length = 1132
Score = 351 (128.6 bits), Expect = 9.3e-31, P = 9.3e-31
Identities = 72/100 (72%), Positives = 82/100 (82%)
Query: 40 KVSKREGDSSLMQLKEEFRTYESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDASRKS 99
KV+KR+ DSSLMQLKEEFRTYE+LRREHD+QIV+IA EAGLRIAPDQWSSLLYGD S KS
Sbjct: 256 KVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAPDQWSSLLYGDQSHKS 315
Query: 100 HMQSIIDKLQNPQSFAQSVQ---VSRTRSPSPSLYRSVEP 136
HMQSIIDKLQ P SFAQSVQ ++ R+ P+ + P
Sbjct: 316 HMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRP 355
Score = 280 (103.6 bits), Expect = 7.5e-28, Sum P(2) = 7.5e-28
Identities = 61/102 (59%), Positives = 75/102 (73%)
Query: 139 LRPVCTVQG---SNPTSCTLSRPMQRKLIGLINCQILEDEGRGRAMRAARSIGPQSKART 195
L+P+ + +G ++ T LSRPMQRKL+ L++CQ++E+EGR RAMRAARS+G
Sbjct: 110 LKPLSSARGVGLNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLG------- 162
Query: 196 PHRTSIGERAVTELNLQHQNPQQLSANLWAAVRARGCQFLGP 237
ER VTEL LQHQNPQQLS+NLWAAVRARGCQFLGP
Sbjct: 163 -------ERTVTELILQHQNPQQLSSNLWAAVRARGCQFLGP 197
Score = 72 (30.4 bits), Expect = 7.5e-28, Sum P(2) = 7.5e-28
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 20 VTLDLDSIPVNFALLQLVGVKVSKREGDSSLMQLKEEFRTYESLRR 65
+ D++ +PVN ALLQLVG +V +++ +L E+ + YE ++
Sbjct: 57 INTDIELLPVNSALLQLVGAQVPEQQ-PITLCSGVEDTKHYEEAKK 101
>UNIPROTKB|E1BZI9 [details] [associations]
symbol:RC3H1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
[GO:0002635 "negative regulation of germinal center formation"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0030889
"negative regulation of B cell proliferation" evidence=IEA]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0045623 "negative regulation of T-helper cell
differentiation" evidence=IEA] [GO:0046007 "negative regulation of
activated T cell proliferation" evidence=IEA] [GO:0050856
"regulation of T cell receptor signaling pathway" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 Prosite:PS00518 GO:GO:0046872
GO:GO:0008270 GO:GO:0003730 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0000932 GO:GO:0000956 GO:GO:0043488 InterPro:IPR017907
GO:GO:0030889 GO:GO:0010494 GO:GO:0033962 GO:GO:0050856
GO:GO:0046007 GO:GO:0002635 OMA:TFDETIR GO:GO:0045623
GeneTree:ENSGT00390000004311 EMBL:AADN02034178 IPI:IPI00819449
Ensembl:ENSGALT00000007298 Uniprot:E1BZI9
Length = 1132
Score = 351 (128.6 bits), Expect = 9.3e-31, P = 9.3e-31
Identities = 72/100 (72%), Positives = 82/100 (82%)
Query: 40 KVSKREGDSSLMQLKEEFRTYESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDASRKS 99
KV+KR+ DSSLMQLKEEFRTYE+LRREHD+QIV+IA EAGLRIAPDQWSSLLYGD S KS
Sbjct: 256 KVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAPDQWSSLLYGDQSHKS 315
Query: 100 HMQSIIDKLQNPQSFAQSVQ---VSRTRSPSPSLYRSVEP 136
HMQSIIDKLQ P SFAQSVQ ++ R+ P+ + P
Sbjct: 316 HMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRP 355
Score = 280 (103.6 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
Identities = 61/102 (59%), Positives = 75/102 (73%)
Query: 139 LRPVCTVQG---SNPTSCTLSRPMQRKLIGLINCQILEDEGRGRAMRAARSIGPQSKART 195
L+P+ + +G ++ T LSRPMQRKL+ L++CQ++E+EGR RAMRAARS+G
Sbjct: 110 LKPLSSARGVGLNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLG------- 162
Query: 196 PHRTSIGERAVTELNLQHQNPQQLSANLWAAVRARGCQFLGP 237
ER VTEL LQHQNPQQLS+NLWAAVRARGCQFLGP
Sbjct: 163 -------ERTVTELILQHQNPQQLSSNLWAAVRARGCQFLGP 197
Score = 70 (29.7 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 20 VTLDLDSIPVNFALLQLVGVKVSKREGDSSLMQLKEEFRTYESLRR 65
+ D++ +PVN ALLQLVG +V +++ ++ E+ + YE ++
Sbjct: 57 INTDIELLPVNSALLQLVGAQVPEQQ-PITICSGAEDTKHYEESKK 101
>UNIPROTKB|F1S727 [details] [associations]
symbol:RC3H1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050856 "regulation of T cell receptor signaling
pathway" evidence=IEA] [GO:0046007 "negative regulation of
activated T cell proliferation" evidence=IEA] [GO:0045623 "negative
regulation of T-helper cell differentiation" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0030889 "negative regulation of B cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IEA] [GO:0002635 "negative regulation of germinal center
formation" evidence=IEA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50089 PROSITE:PS50103 SMART:SM00184 Prosite:PS00518
GO:GO:0046872 GO:GO:0008270 GO:GO:0003730 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0000932 GO:GO:0000956 GO:GO:0043488
InterPro:IPR017907 GO:GO:0030889 GO:GO:0010494 GO:GO:0033962
GO:GO:0050856 GO:GO:0046007 GO:GO:0002635 OMA:TFDETIR GO:GO:0045623
GeneTree:ENSGT00390000004311 EMBL:FP015896 EMBL:FP102036
Ensembl:ENSSSCT00000016884 ArrayExpress:F1S727 Uniprot:F1S727
Length = 1133
Score = 351 (128.6 bits), Expect = 9.3e-31, P = 9.3e-31
Identities = 72/100 (72%), Positives = 82/100 (82%)
Query: 40 KVSKREGDSSLMQLKEEFRTYESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDASRKS 99
KV+KR+ DSSLMQLKEEFRTYE+LRREHD+QIV+IA EAGLRIAPDQWSSLLYGD S KS
Sbjct: 256 KVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAPDQWSSLLYGDQSHKS 315
Query: 100 HMQSIIDKLQNPQSFAQSVQ---VSRTRSPSPSLYRSVEP 136
HMQSIIDKLQ P SFAQSVQ ++ R+ P+ + P
Sbjct: 316 HMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRP 355
Score = 280 (103.6 bits), Expect = 7.6e-28, Sum P(2) = 7.6e-28
Identities = 61/102 (59%), Positives = 75/102 (73%)
Query: 139 LRPVCTVQG---SNPTSCTLSRPMQRKLIGLINCQILEDEGRGRAMRAARSIGPQSKART 195
L+P+ + +G ++ T LSRPMQRKL+ L++CQ++E+EGR RAMRAARS+G
Sbjct: 110 LKPLSSARGVGLNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLG------- 162
Query: 196 PHRTSIGERAVTELNLQHQNPQQLSANLWAAVRARGCQFLGP 237
ER VTEL LQHQNPQQLS+NLWAAVRARGCQFLGP
Sbjct: 163 -------ERTVTELILQHQNPQQLSSNLWAAVRARGCQFLGP 197
Score = 72 (30.4 bits), Expect = 7.6e-28, Sum P(2) = 7.6e-28
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 20 VTLDLDSIPVNFALLQLVGVKVSKREGDSSLMQLKEEFRTYESLRR 65
+ D++ +PVN ALLQLVG +V +++ +L E+ + YE ++
Sbjct: 57 INTDIELLPVNSALLQLVGAQVPEQQ-PITLCSGVEDTKHYEEAKK 101
>UNIPROTKB|J9P406 [details] [associations]
symbol:J9P406 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50089 PROSITE:PS50103
SMART:SM00184 SMART:SM00356 Prosite:PS00518 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 GeneTree:ENSGT00390000004311 EMBL:AAEX03006906
Ensembl:ENSCAFT00000045756 OMA:MQEEVLR Uniprot:J9P406
Length = 442
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 65/80 (81%), Positives = 75/80 (93%)
Query: 40 KVSKREGDSSLMQLKEEFRTYESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDASRKS 99
KV+KR+ DSSLMQLKEEFR+YE+LRREHDAQIV IA EAGLRI+P+QWSSLLYGD + KS
Sbjct: 253 KVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQWSSLLYGDLAHKS 312
Query: 100 HMQSIIDKLQNPQSFAQSVQ 119
HMQSIIDKLQ+P+SFA+SVQ
Sbjct: 313 HMQSIIDKLQSPESFAKSVQ 332
Score = 280 (103.6 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 62/100 (62%), Positives = 73/100 (73%)
Query: 139 LRPVCTVQG-SNPTSCTLSRPMQRKLIGLINCQILEDEGRGRAMRAARSIGPQSKARTPH 197
L+P+ +G ++ LSRPMQRKL+ L+NCQ++E+EGR RAMRAARS+G
Sbjct: 109 LKPLSGGKGVASLNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLG--------- 159
Query: 198 RTSIGERAVTELNLQHQNPQQLSANLWAAVRARGCQFLGP 237
ER VTEL LQHQNPQQLSANLWAAVRARGCQFLGP
Sbjct: 160 -----ERTVTELILQHQNPQQLSANLWAAVRARGCQFLGP 194
Score = 78 (32.5 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 20 VTLDLDSIPVNFALLQLVGVKVSKREGDSSLMQLKEEFRTYESLRR 65
+ D+D +PVNFALLQLVG +V + L L E + YE ++
Sbjct: 57 INTDIDVLPVNFALLQLVGAQVPDHQS-IKLSNLGEN-KHYEVAKK 100
>ZFIN|ZDB-GENE-060503-694 [details] [associations]
symbol:rc3h2 "ring finger and CCCH-type domains 2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50089 PROSITE:PS50103
SMART:SM00184 SMART:SM00356 Prosite:PS00518
ZFIN:ZDB-GENE-060503-694 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907
GeneTree:ENSGT00390000004311 EMBL:BX248511 IPI:IPI00500803
Ensembl:ENSDART00000091780 Uniprot:F1Q4N1
Length = 1038
Score = 339 (124.4 bits), Expect = 1.8e-30, Sum P(2) = 1.8e-30
Identities = 66/80 (82%), Positives = 75/80 (93%)
Query: 40 KVSKREGDSSLMQLKEEFRTYESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDASRKS 99
KV+KR+ DSSLMQLKEEFRTYE+LRREHDAQIV IA EAGLRI+P+QWSSLLYGD + KS
Sbjct: 253 KVTKRDEDSSLMQLKEEFRTYEALRREHDAQIVHIAMEAGLRISPEQWSSLLYGDLTHKS 312
Query: 100 HMQSIIDKLQNPQSFAQSVQ 119
HMQSIIDKLQ+P+SFA+SVQ
Sbjct: 313 HMQSIIDKLQSPESFAKSVQ 332
Score = 276 (102.2 bits), Expect = 1.4e-28, Sum P(2) = 1.4e-28
Identities = 62/100 (62%), Positives = 71/100 (71%)
Query: 139 LRPVCTVQGSN-PTSCTLSRPMQRKLIGLINCQILEDEGRGRAMRAARSIGPQSKARTPH 197
L+PV +G T LSRPMQRKL+ L+NCQ++E+EGR RA+RA RS+G
Sbjct: 109 LKPVSGGKGELVKTETQLSRPMQRKLVTLVNCQLVEEEGRVRAVRACRSLG--------- 159
Query: 198 RTSIGERAVTELNLQHQNPQQLSANLWAAVRARGCQFLGP 237
ER VTEL LQHQNPQQLSANLWAAVRARGCQFLGP
Sbjct: 160 -----ERTVTELILQHQNPQQLSANLWAAVRARGCQFLGP 194
Score = 82 (33.9 bits), Expect = 1.4e-28, Sum P(2) = 1.4e-28
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 20 VTLDLDSIPVNFALLQLVGVKVSKREGDSSLMQLKEEFRTYESLR 64
++ D+D +PVN ALLQLVGV V EG+ + E+ R YE R
Sbjct: 57 ISTDIDVLPVNCALLQLVGVPVP--EGEVVSVGNAEDTRHYEVCR 99
Score = 36 (17.7 bits), Expect = 1.8e-30, Sum P(2) = 1.8e-30
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 122 RTRSPSPSL--YRSVEPAVLRPVCTVQGS 148
R R S ++ + SV PAV+ CT GS
Sbjct: 448 RNRKASGAVRPFLSV-PAVMAKSCTKAGS 475
>ZFIN|ZDB-GENE-050208-702 [details] [associations]
symbol:rc3h1 "ring finger and CCCH-type zinc finger
domains 1" species:7955 "Danio rerio" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000571 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 Prosite:PS00518
ZFIN:ZDB-GENE-050208-702 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907
HOVERGEN:HBG080524 GeneTree:ENSGT00390000004311 EMBL:BX908392
IPI:IPI00633174 UniGene:Dr.51107 Ensembl:ENSDART00000090594
Ensembl:ENSDART00000144545 InParanoid:Q1LV60 Uniprot:Q1LV60
Length = 1078
Score = 347 (127.2 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 71/100 (71%), Positives = 81/100 (81%)
Query: 40 KVSKREGDSSLMQLKEEFRTYESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDASRKS 99
KV+KR+ DSSLMQLKEEFRTYE+LRREHD+QIV+IA E GLRIAPDQWSSLLYGD S KS
Sbjct: 256 KVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAPDQWSSLLYGDQSHKS 315
Query: 100 HMQSIIDKLQNPQSFAQSVQ---VSRTRSPSPSLYRSVEP 136
HMQSIIDKLQ P SFAQSVQ ++ R+ P+ + P
Sbjct: 316 HMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRP 355
Score = 273 (101.2 bits), Expect = 3.6e-27, Sum P(2) = 3.6e-27
Identities = 60/102 (58%), Positives = 72/102 (70%)
Query: 139 LRPVCTVQGSN---PTSCTLSRPMQRKLIGLINCQILEDEGRGRAMRAARSIGPQSKART 195
L+P+ +G+ LSRPMQRKL+ L++CQ++E+EGR RAMRAARS+G
Sbjct: 110 LKPLSNTRGAGLNGAAQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLG------- 162
Query: 196 PHRTSIGERAVTELNLQHQNPQQLSANLWAAVRARGCQFLGP 237
ER VTEL LQHQNPQQLS+NLWAAVRARGCQFLGP
Sbjct: 163 -------ERTVTELILQHQNPQQLSSNLWAAVRARGCQFLGP 197
Score = 72 (30.4 bits), Expect = 3.6e-27, Sum P(2) = 3.6e-27
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 20 VTLDLDSIPVNFALLQLVGVKVSKREGDSSLMQLKEEFRTYESLR 64
++ D++ +PVN ALLQLV +V K +L+ E+ + YE R
Sbjct: 57 ISTDIEQLPVNTALLQLVSGQVPKAP-PVTLLTAAEDVKHYEESR 100
>ZFIN|ZDB-GENE-060503-79 [details] [associations]
symbol:si:dkey-60b12.1 "si:dkey-60b12.1"
species:7955 "Danio rerio" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 PROSITE:PS50089 PROSITE:PS50103 SMART:SM00184
Prosite:PS00518 ZFIN:ZDB-GENE-060503-79 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 eggNOG:NOG320727 HOVERGEN:HBG080524 KO:K15690
GeneTree:ENSGT00390000004311 HOGENOM:HOG000232030 OrthoDB:EOG4XD3Q9
EMBL:AL953893 IPI:IPI00509549 RefSeq:NP_001108155.1
UniGene:Dr.73872 Ensembl:ENSDART00000139703 GeneID:558213
KEGG:dre:558213 NextBio:20882371 Uniprot:A8DZI0
Length = 1111
Score = 347 (127.2 bits), Expect = 2.4e-30, P = 2.4e-30
Identities = 71/100 (71%), Positives = 81/100 (81%)
Query: 40 KVSKREGDSSLMQLKEEFRTYESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDASRKS 99
KV+KR+ DSSLMQLKEEFRTYE+LRREHD+QIV+IA E GLRIAPDQWSSLLYGD S KS
Sbjct: 256 KVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAPDQWSSLLYGDQSHKS 315
Query: 100 HMQSIIDKLQNPQSFAQSVQ---VSRTRSPSPSLYRSVEP 136
HMQSIIDKLQ P SFAQSVQ ++ R+ P+ + P
Sbjct: 316 HMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRP 355
Score = 283 (104.7 bits), Expect = 6.3e-29, Sum P(2) = 6.3e-29
Identities = 62/102 (60%), Positives = 74/102 (72%)
Query: 139 LRPVCTVQG---SNPTSCTLSRPMQRKLIGLINCQILEDEGRGRAMRAARSIGPQSKART 195
L+P+ + +G SN LSRPMQRKL+ L++CQ++E+EGR RAMRAARS+G
Sbjct: 110 LKPLSSARGVGLSNAAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLG------- 162
Query: 196 PHRTSIGERAVTELNLQHQNPQQLSANLWAAVRARGCQFLGP 237
ER VTEL LQHQNPQQLS+NLWAAVRARGCQFLGP
Sbjct: 163 -------ERTVTELILQHQNPQQLSSNLWAAVRARGCQFLGP 197
Score = 79 (32.9 bits), Expect = 6.3e-29, Sum P(2) = 6.3e-29
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 20 VTLDLDSIPVNFALLQLVGVKVSKREGDSSLMQLKEEFRTYESLRR 65
+ D++ +PVN ALLQLVG +V K++ +L+ E+ + Y+ R+
Sbjct: 57 INTDIEQLPVNSALLQLVGGQVPKQQ-PVALITCPEDTKHYDEARQ 101
>UNIPROTKB|A6NHN2 [details] [associations]
symbol:RC3H2 "RING finger and CCCH-type zinc finger
domain-containing protein 2" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50089 PROSITE:PS50103 SMART:SM00184
SMART:SM00356 Prosite:PS00518 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 EMBL:AL359512 EMBL:AC007066 HGNC:HGNC:21461
ChiTaRS:RC3H2 IPI:IPI00385357 ProteinModelPortal:A6NHN2 SMR:A6NHN2
Ensembl:ENST00000335387 HOGENOM:HOG000293270 ArrayExpress:A6NHN2
Bgee:A6NHN2 Uniprot:A6NHN2
Length = 506
Score = 335 (123.0 bits), Expect = 3.6e-30, P = 3.6e-30
Identities = 65/80 (81%), Positives = 75/80 (93%)
Query: 40 KVSKREGDSSLMQLKEEFRTYESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDASRKS 99
KV+KR+ DSSLMQLKEEFR+YE+LRREHDAQIV IA EAGLRI+P+QWSSLLYGD + KS
Sbjct: 253 KVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQWSSLLYGDLAHKS 312
Query: 100 HMQSIIDKLQNPQSFAQSVQ 119
HMQSIIDKLQ+P+SFA+SVQ
Sbjct: 313 HMQSIIDKLQSPESFAKSVQ 332
Score = 280 (103.6 bits), Expect = 5.2e-30, Sum P(2) = 5.2e-30
Identities = 62/100 (62%), Positives = 73/100 (73%)
Query: 139 LRPVCTVQG-SNPTSCTLSRPMQRKLIGLINCQILEDEGRGRAMRAARSIGPQSKARTPH 197
L+P+ +G ++ LSRPMQRKL+ L+NCQ++E+EGR RAMRAARS+G
Sbjct: 109 LKPLSGGKGVASLNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLG--------- 159
Query: 198 RTSIGERAVTELNLQHQNPQQLSANLWAAVRARGCQFLGP 237
ER VTEL LQHQNPQQLSANLWAAVRARGCQFLGP
Sbjct: 160 -----ERTVTELILQHQNPQQLSANLWAAVRARGCQFLGP 194
Score = 78 (32.5 bits), Expect = 5.2e-30, Sum P(2) = 5.2e-30
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 20 VTLDLDSIPVNFALLQLVGVKVSKREGDSSLMQLKEEFRTYESLRR 65
+ D+D +PVNFALLQLVG +V + L L E + YE ++
Sbjct: 57 INTDIDVLPVNFALLQLVGAQVPDHQS-IKLSNLGEN-KHYEVAKK 100
>UNIPROTKB|Q4VXB0 [details] [associations]
symbol:RC3H2 "RING finger and CCCH-type zinc finger
domain-containing protein 2" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0008270 GO:GO:0003676
EMBL:AL359512 EMBL:AC007066 HOVERGEN:HBG080524 HOGENOM:HOG000232030
IPI:IPI00386606 UniGene:Hs.533499 HGNC:HGNC:21461 ChiTaRS:RC3H2
SMR:Q4VXB0 Ensembl:ENST00000373663 Uniprot:Q4VXB0
Length = 935
Score = 335 (123.0 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 65/80 (81%), Positives = 75/80 (93%)
Query: 40 KVSKREGDSSLMQLKEEFRTYESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDASRKS 99
KV+KR+ DSSLMQLKEEFR+YE+LRREHDAQIV IA EAGLRI+P+QWSSLLYGD + KS
Sbjct: 124 KVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQWSSLLYGDLAHKS 183
Query: 100 HMQSIIDKLQNPQSFAQSVQ 119
HMQSIIDKLQ+P+SFA+SVQ
Sbjct: 184 HMQSIIDKLQSPESFAKSVQ 203
Score = 256 (95.2 bits), Expect = 9.7e-21, P = 9.7e-21
Identities = 55/79 (69%), Positives = 61/79 (77%)
Query: 159 MQRKLIGLINCQILEDEGRGRAMRAARSIGPQSKARTPHRTSIGERAVTELNLQHQNPQQ 218
MQRKL+ L+NCQ++E+EGR RAMRAARS+G ER VTEL LQHQNPQQ
Sbjct: 1 MQRKLVTLVNCQLVEEEGRVRAMRAARSLG--------------ERTVTELILQHQNPQQ 46
Query: 219 LSANLWAAVRARGCQFLGP 237
LSANLWAAVRARGCQFLGP
Sbjct: 47 LSANLWAAVRARGCQFLGP 65
>MGI|MGI:2442789 [details] [associations]
symbol:Rc3h2 "ring finger and CCCH-type zinc finger domains
2" species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009986 "cell surface" evidence=ISO] [GO:0016020 "membrane"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 MGI:MGI:2442789
Prosite:PS00518 GO:GO:0048471 GO:GO:0009986 GO:GO:0016020
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0012505
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907
eggNOG:NOG320727 HOVERGEN:HBG080524 KO:K15690
GeneTree:ENSGT00390000004311 HOGENOM:HOG000232030 CTD:54542
OMA:CFSQPLP ChiTaRS:RC3H2 EMBL:AL929572 IPI:IPI00349293
RefSeq:NP_001094061.1 UniGene:Mm.288785 UniGene:Mm.485302
ProteinModelPortal:P0C090 SMR:P0C090 PhosphoSite:P0C090
PaxDb:P0C090 PRIDE:P0C090 Ensembl:ENSMUST00000100143
Ensembl:ENSMUST00000112936 GeneID:319817 KEGG:mmu:319817
UCSC:uc008jmq.1 InParanoid:P0C090 NextBio:395454 Bgee:P0C090
CleanEx:MM_RC3H2 Genevestigator:P0C090
GermOnline:ENSMUSG00000075376 Uniprot:P0C090
Length = 1187
Score = 335 (123.0 bits), Expect = 5.1e-29, P = 5.1e-29
Identities = 65/80 (81%), Positives = 75/80 (93%)
Query: 40 KVSKREGDSSLMQLKEEFRTYESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDASRKS 99
KV+KR+ DSSLMQLKEEFR+YE+LRREHDAQIV IA EAGLRI+P+QWSSLLYGD + KS
Sbjct: 253 KVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQWSSLLYGDLAHKS 312
Query: 100 HMQSIIDKLQNPQSFAQSVQ 119
HMQSIIDKLQ+P+SFA+SVQ
Sbjct: 313 HMQSIIDKLQSPESFAKSVQ 332
Score = 280 (103.6 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
Identities = 62/100 (62%), Positives = 73/100 (73%)
Query: 139 LRPVCTVQG-SNPTSCTLSRPMQRKLIGLINCQILEDEGRGRAMRAARSIGPQSKARTPH 197
L+P+ +G ++ LSRPMQRKL+ L+NCQ++E+EGR RAMRAARS+G
Sbjct: 109 LKPLSGGKGVASLNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLG--------- 159
Query: 198 RTSIGERAVTELNLQHQNPQQLSANLWAAVRARGCQFLGP 237
ER VTEL LQHQNPQQLSANLWAAVRARGCQFLGP
Sbjct: 160 -----ERTVTELILQHQNPQQLSANLWAAVRARGCQFLGP 194
Score = 78 (32.5 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 20 VTLDLDSIPVNFALLQLVGVKVSKREGDSSLMQLKEEFRTYESLRR 65
+ D+D +PVNFALLQLVG +V + L L E + YE ++
Sbjct: 57 INTDIDVLPVNFALLQLVGAQVPDHQS-IKLSNLGEN-KHYEVAKK 100
>RGD|1304833 [details] [associations]
symbol:Rc3h2 "ring finger and CCCH-type domains 2" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009986 "cell
surface" evidence=IEA;ISO] [GO:0016020 "membrane" evidence=IEA;ISO]
InterPro:IPR001841 InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 RGD:1304833
Prosite:PS00518 GO:GO:0009986 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 KO:K15690 GeneTree:ENSGT00390000004311 CTD:54542
OrthoDB:EOG4BG8V7 EMBL:CH473983 IPI:IPI00554241
RefSeq:NP_001101309.1 UniGene:Rn.134067 Ensembl:ENSRNOT00000012354
GeneID:311909 KEGG:rno:311909 UCSC:RGD:1304833 NextBio:664444
Uniprot:D3ZBM2
Length = 1187
Score = 335 (123.0 bits), Expect = 5.1e-29, P = 5.1e-29
Identities = 65/80 (81%), Positives = 75/80 (93%)
Query: 40 KVSKREGDSSLMQLKEEFRTYESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDASRKS 99
KV+KR+ DSSLMQLKEEFR+YE+LRREHDAQIV IA EAGLRI+P+QWSSLLYGD + KS
Sbjct: 253 KVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQWSSLLYGDLAHKS 312
Query: 100 HMQSIIDKLQNPQSFAQSVQ 119
HMQSIIDKLQ+P+SFA+SVQ
Sbjct: 313 HMQSIIDKLQSPESFAKSVQ 332
Score = 280 (103.6 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
Identities = 62/100 (62%), Positives = 73/100 (73%)
Query: 139 LRPVCTVQG-SNPTSCTLSRPMQRKLIGLINCQILEDEGRGRAMRAARSIGPQSKARTPH 197
L+P+ +G ++ LSRPMQRKL+ L+NCQ++E+EGR RAMRAARS+G
Sbjct: 109 LKPLSGGKGVASLNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLG--------- 159
Query: 198 RTSIGERAVTELNLQHQNPQQLSANLWAAVRARGCQFLGP 237
ER VTEL LQHQNPQQLSANLWAAVRARGCQFLGP
Sbjct: 160 -----ERTVTELILQHQNPQQLSANLWAAVRARGCQFLGP 194
Score = 78 (32.5 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 20 VTLDLDSIPVNFALLQLVGVKVSKREGDSSLMQLKEEFRTYESLRR 65
+ D+D +PVNFALLQLVG +V + L L E + YE ++
Sbjct: 57 INTDIDVLPVNFALLQLVGAQVPDHQS-IKLSNLGEN-KHYEVAKK 100
>UNIPROTKB|Q9HBD1 [details] [associations]
symbol:RC3H2 "RING finger and CCCH-type zinc finger
domain-containing protein 2" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0012505
"endomembrane system" evidence=IEA] [GO:0048471 "perinuclear region
of cytoplasm" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003677 "DNA binding" evidence=IDA] [GO:0009986
"cell surface" evidence=IDA] [GO:0016020 "membrane" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 Prosite:PS00518
GO:GO:0048471 GO:GO:0009986 GO:GO:0016020 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:CH471090 GO:GO:0012505
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907
EMBL:AL359512 EMBL:AC007066 eggNOG:NOG320727 HOVERGEN:HBG080524
KO:K15690 EMBL:AF255303 EMBL:AF255304 EMBL:AK000308 EMBL:AK000720
EMBL:AK027042 EMBL:AL833177 EMBL:AL834431 EMBL:BC011688
EMBL:BC044642 IPI:IPI00177819 IPI:IPI00386606 IPI:IPI00552838
IPI:IPI00643035 IPI:IPI00643666 IPI:IPI00873992
RefSeq:NP_001094058.1 RefSeq:NP_061323.2 UniGene:Hs.533499
ProteinModelPortal:Q9HBD1 SMR:Q9HBD1 IntAct:Q9HBD1
PhosphoSite:Q9HBD1 DMDM:73621223 PaxDb:Q9HBD1 PRIDE:Q9HBD1
Ensembl:ENST00000357244 Ensembl:ENST00000373665
Ensembl:ENST00000373670 Ensembl:ENST00000423239 GeneID:54542
KEGG:hsa:54542 UCSC:uc004bnd.1 UCSC:uc004bne.4 UCSC:uc004bng.1
UCSC:uc011lzg.2 CTD:54542 GeneCards:GC09M125606 HGNC:HGNC:21461
HPA:HPA042863 neXtProt:NX_Q9HBD1 PharmGKB:PA162400905
InParanoid:Q9HBD1 OMA:CFSQPLP OrthoDB:EOG4BG8V7 ChiTaRS:RC3H2
GenomeRNAi:54542 NextBio:56985 ArrayExpress:Q9HBD1 Bgee:Q9HBD1
CleanEx:HS_RC3H2 Genevestigator:Q9HBD1 GermOnline:ENSG00000056586
Uniprot:Q9HBD1
Length = 1191
Score = 335 (123.0 bits), Expect = 5.2e-29, P = 5.2e-29
Identities = 65/80 (81%), Positives = 75/80 (93%)
Query: 40 KVSKREGDSSLMQLKEEFRTYESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDASRKS 99
KV+KR+ DSSLMQLKEEFR+YE+LRREHDAQIV IA EAGLRI+P+QWSSLLYGD + KS
Sbjct: 253 KVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQWSSLLYGDLAHKS 312
Query: 100 HMQSIIDKLQNPQSFAQSVQ 119
HMQSIIDKLQ+P+SFA+SVQ
Sbjct: 313 HMQSIIDKLQSPESFAKSVQ 332
Score = 280 (103.6 bits), Expect = 2.1e-28, Sum P(2) = 2.1e-28
Identities = 62/100 (62%), Positives = 73/100 (73%)
Query: 139 LRPVCTVQG-SNPTSCTLSRPMQRKLIGLINCQILEDEGRGRAMRAARSIGPQSKARTPH 197
L+P+ +G ++ LSRPMQRKL+ L+NCQ++E+EGR RAMRAARS+G
Sbjct: 109 LKPLSGGKGVASLNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLG--------- 159
Query: 198 RTSIGERAVTELNLQHQNPQQLSANLWAAVRARGCQFLGP 237
ER VTEL LQHQNPQQLSANLWAAVRARGCQFLGP
Sbjct: 160 -----ERTVTELILQHQNPQQLSANLWAAVRARGCQFLGP 194
Score = 78 (32.5 bits), Expect = 2.1e-28, Sum P(2) = 2.1e-28
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 20 VTLDLDSIPVNFALLQLVGVKVSKREGDSSLMQLKEEFRTYESLRR 65
+ D+D +PVNFALLQLVG +V + L L E + YE ++
Sbjct: 57 INTDIDVLPVNFALLQLVGAQVPDHQS-IKLSNLGEN-KHYEVAKK 100
>UNIPROTKB|E1BP22 [details] [associations]
symbol:LOC538803 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0016020 "membrane" evidence=IEA] [GO:0009986 "cell
surface" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50089 PROSITE:PS50103
SMART:SM00184 SMART:SM00356 Prosite:PS00518 GO:GO:0009986
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 GeneTree:ENSGT00390000004311 OMA:CFSQPLP
EMBL:DAAA02032085 IPI:IPI00924176 Ensembl:ENSBTAT00000032789
NextBio:20926021 ArrayExpress:E1BP22 Uniprot:E1BP22
Length = 1191
Score = 335 (123.0 bits), Expect = 5.2e-29, P = 5.2e-29
Identities = 65/80 (81%), Positives = 75/80 (93%)
Query: 40 KVSKREGDSSLMQLKEEFRTYESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDASRKS 99
KV+KR+ DSSLMQLKEEFR+YE+LRREHDAQIV IA EAGLRI+P+QWSSLLYGD + KS
Sbjct: 253 KVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQWSSLLYGDLAHKS 312
Query: 100 HMQSIIDKLQNPQSFAQSVQ 119
HMQSIIDKLQ+P+SFA+SVQ
Sbjct: 313 HMQSIIDKLQSPESFAKSVQ 332
Score = 276 (102.2 bits), Expect = 5.5e-28, Sum P(2) = 5.5e-28
Identities = 61/100 (61%), Positives = 73/100 (73%)
Query: 139 LRPVCTVQG-SNPTSCTLSRPMQRKLIGLINCQILEDEGRGRAMRAARSIGPQSKARTPH 197
L+P+ +G ++ LSRPMQRKL+ L+NCQ++E+EGR RA+RAARS+G
Sbjct: 109 LKPLSGGKGVASLNQSALSRPMQRKLVTLVNCQLVEEEGRVRAIRAARSLG--------- 159
Query: 198 RTSIGERAVTELNLQHQNPQQLSANLWAAVRARGCQFLGP 237
ER VTEL LQHQNPQQLSANLWAAVRARGCQFLGP
Sbjct: 160 -----ERTVTELILQHQNPQQLSANLWAAVRARGCQFLGP 194
Score = 78 (32.5 bits), Expect = 5.5e-28, Sum P(2) = 5.5e-28
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 20 VTLDLDSIPVNFALLQLVGVKVSKREGDSSLMQLKEEFRTYESLRR 65
+ D+D +PVNFALLQLVG +V + L L E + YE ++
Sbjct: 57 INTDIDVLPVNFALLQLVGAQVPDHQS-VKLSNLGEN-KHYEVAKK 100
>UNIPROTKB|F1SKW1 [details] [associations]
symbol:RC3H2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50089 PROSITE:PS50103
SMART:SM00184 SMART:SM00356 Prosite:PS00518 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 GeneTree:ENSGT00390000004311 OMA:CFSQPLP
EMBL:CU075436 Ensembl:ENSSSCT00000006128 Uniprot:F1SKW1
Length = 1192
Score = 335 (123.0 bits), Expect = 5.2e-29, P = 5.2e-29
Identities = 65/80 (81%), Positives = 75/80 (93%)
Query: 40 KVSKREGDSSLMQLKEEFRTYESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDASRKS 99
KV+KR+ DSSLMQLKEEFR+YE+LRREHDAQIV IA EAGLRI+P+QWSSLLYGD + KS
Sbjct: 253 KVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQWSSLLYGDLAHKS 312
Query: 100 HMQSIIDKLQNPQSFAQSVQ 119
HMQSIIDKLQ+P+SFA+SVQ
Sbjct: 313 HMQSIIDKLQSPESFAKSVQ 332
Score = 280 (103.6 bits), Expect = 1.3e-28, Sum P(2) = 1.3e-28
Identities = 62/100 (62%), Positives = 73/100 (73%)
Query: 139 LRPVCTVQG-SNPTSCTLSRPMQRKLIGLINCQILEDEGRGRAMRAARSIGPQSKARTPH 197
L+P+ +G ++ LSRPMQRKL+ L+NCQ++E+EGR RAMRAARS+G
Sbjct: 109 LKPLSGGKGVASLNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLG--------- 159
Query: 198 RTSIGERAVTELNLQHQNPQQLSANLWAAVRARGCQFLGP 237
ER VTEL LQHQNPQQLSANLWAAVRARGCQFLGP
Sbjct: 160 -----ERTVTELILQHQNPQQLSANLWAAVRARGCQFLGP 194
Score = 80 (33.2 bits), Expect = 1.3e-28, Sum P(2) = 1.3e-28
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 20 VTLDLDSIPVNFALLQLVGVKVSKREGDSSLMQLKEEFRTYESLRR 65
+ D+D +PVNFALLQLVG +V + L L E + YE ++
Sbjct: 57 INTDIDVLPVNFALLQLVGAQVPDHQS-IKLSNLGEN-KNYEVAKK 100
>UNIPROTKB|F1NHN9 [details] [associations]
symbol:RC3H1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 GO:GO:0008270 GO:GO:0003676
GeneTree:ENSGT00390000004311 EMBL:AADN02034178 IPI:IPI00601306
Ensembl:ENSGALT00000039453 Uniprot:F1NHN9
Length = 487
Score = 313 (115.2 bits), Expect = 9.3e-28, P = 9.3e-28
Identities = 64/89 (71%), Positives = 72/89 (80%)
Query: 51 MQLKEEFRTYESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDASRKSHMQSIIDKLQN 110
MQLKEEFRTYE+LRREHD+QIV+IA EAGLRIAPDQWSSLLYGD S KSHMQSIIDKLQ
Sbjct: 1 MQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAPDQWSSLLYGDQSHKSHMQSIIDKLQT 60
Query: 111 PQSFAQSVQ---VSRTRSPSPSLYRSVEP 136
P SFAQSVQ ++ R+ P+ + P
Sbjct: 61 PASFAQSVQELTIALQRTGDPANLNRLRP 89
>WB|WBGene00010923 [details] [associations]
symbol:rle-1 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=IDA] InterPro:IPR001841
PROSITE:PS50089 SMART:SM00184 UniPathway:UPA00144 Prosite:PS00518
GO:GO:0008340 GO:GO:0040010 GO:GO:0043161 GO:GO:0046872
GO:GO:0008270 GO:GO:0009408 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 InterPro:IPR017907 GO:GO:0042787 HSSP:Q13049
EMBL:Z73428 eggNOG:NOG320727 GeneTree:ENSGT00390000004311
EMBL:Z99276 PIR:T23764 RefSeq:NP_001255093.1 RefSeq:NP_001255094.1
RefSeq:NP_001255095.1 ProteinModelPortal:O45962 SMR:O45962
DIP:DIP-24657N IntAct:O45962 MINT:MINT-1087181 PaxDb:O45962
GeneID:13191259 GeneID:176525 KEGG:cel:CELE_M142.6
KEGG:cel:CELE_M142.6a UCSC:M142.6 CTD:176525 WormBase:M142.6a
WormBase:M142.6b WormBase:M142.6c HOGENOM:HOG000021266
InParanoid:O45962 OMA:RSHMQSI NextBio:892944 Uniprot:O45962
Length = 952
Score = 308 (113.5 bits), Expect = 2.7e-26, P = 2.7e-26
Identities = 61/87 (70%), Positives = 72/87 (82%)
Query: 41 VSKREGDSSLMQLKEEFRTYESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDASRKSH 100
V KR+G+SSLMQLKEEFRTYESLRREHD+QIV+IA E+GLRI PDQWS+LLY D S +SH
Sbjct: 252 VLKRDGESSLMQLKEEFRTYESLRREHDSQIVQIAFESGLRIGPDQWSALLYADQSHRSH 311
Query: 101 MQSIIDKLQNPQSFAQSVQVSRTRSPS 127
MQSIIDKLQ+ S+ Q V+ R + S
Sbjct: 312 MQSIIDKLQSKNSYQQGVEELRALAGS 338
Score = 132 (51.5 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 34/92 (36%), Positives = 51/92 (55%)
Query: 146 QGSNPTSCTLSRPMQRKLIGLINCQILEDEGRGRAMRAARSIGPQSKARTPHRTSIGERA 205
+G +S +SR +QRK++ L+ Q E +GR + ++ R I ER
Sbjct: 115 RGGTVSSREISRTLQRKVLALLCYQWREVDGRLKTLKMCRGIS--------------ERV 160
Query: 206 VTELNLQHQNPQQLSANLWAAVRARGCQFLGP 237
+ E+ L Q+ +S+ LW+AVRARGCQFLGP
Sbjct: 161 MIEIILSIQSNTHVSSQLWSAVRARGCQFLGP 192
>UNIPROTKB|O45962 [details] [associations]
symbol:rle-1 "Regulation of longevity by E3
ubiquitin-protein ligase" species:6239 "Caenorhabditis elegans"
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0009408 "response to heat" evidence=IMP] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR001841 PROSITE:PS50089
SMART:SM00184 UniPathway:UPA00144 Prosite:PS00518 GO:GO:0008340
GO:GO:0040010 GO:GO:0043161 GO:GO:0046872 GO:GO:0008270
GO:GO:0009408 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
InterPro:IPR017907 GO:GO:0042787 HSSP:Q13049 EMBL:Z73428
eggNOG:NOG320727 GeneTree:ENSGT00390000004311 EMBL:Z99276
PIR:T23764 RefSeq:NP_001255093.1 RefSeq:NP_001255094.1
RefSeq:NP_001255095.1 ProteinModelPortal:O45962 SMR:O45962
DIP:DIP-24657N IntAct:O45962 MINT:MINT-1087181 PaxDb:O45962
GeneID:13191259 GeneID:176525 KEGG:cel:CELE_M142.6
KEGG:cel:CELE_M142.6a UCSC:M142.6 CTD:176525 WormBase:M142.6a
WormBase:M142.6b WormBase:M142.6c HOGENOM:HOG000021266
InParanoid:O45962 OMA:RSHMQSI NextBio:892944 Uniprot:O45962
Length = 952
Score = 308 (113.5 bits), Expect = 2.7e-26, P = 2.7e-26
Identities = 61/87 (70%), Positives = 72/87 (82%)
Query: 41 VSKREGDSSLMQLKEEFRTYESLRREHDAQIVEIATEAGLRIAPDQWSSLLYGDASRKSH 100
V KR+G+SSLMQLKEEFRTYESLRREHD+QIV+IA E+GLRI PDQWS+LLY D S +SH
Sbjct: 252 VLKRDGESSLMQLKEEFRTYESLRREHDSQIVQIAFESGLRIGPDQWSALLYADQSHRSH 311
Query: 101 MQSIIDKLQNPQSFAQSVQVSRTRSPS 127
MQSIIDKLQ+ S+ Q V+ R + S
Sbjct: 312 MQSIIDKLQSKNSYQQGVEELRALAGS 338
Score = 132 (51.5 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 34/92 (36%), Positives = 51/92 (55%)
Query: 146 QGSNPTSCTLSRPMQRKLIGLINCQILEDEGRGRAMRAARSIGPQSKARTPHRTSIGERA 205
+G +S +SR +QRK++ L+ Q E +GR + ++ R I ER
Sbjct: 115 RGGTVSSREISRTLQRKVLALLCYQWREVDGRLKTLKMCRGIS--------------ERV 160
Query: 206 VTELNLQHQNPQQLSANLWAAVRARGCQFLGP 237
+ E+ L Q+ +S+ LW+AVRARGCQFLGP
Sbjct: 161 MIEIILSIQSNTHVSSQLWSAVRARGCQFLGP 192
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.130 0.378 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 237 237 0.00090 113 3 11 22 0.43 33
32 0.43 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 23
No. of states in DFA: 608 (65 KB)
Total size of DFA: 181 KB (2104 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.25u 0.11s 23.36t Elapsed: 00:00:01
Total cpu time: 23.25u 0.11s 23.36t Elapsed: 00:00:01
Start: Thu Aug 15 13:49:15 2013 End: Thu Aug 15 13:49:16 2013