RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17485
(237 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 2e-07
Identities = 35/227 (15%), Positives = 66/227 (29%), Gaps = 78/227 (34%)
Query: 5 LVSQPDGLSTDRFWNVTLD----------------LDSIPVNF---ALLQLVGVKVSKRE 45
L+ ++ + L+ L SIP++ ++QL V+ +
Sbjct: 198 LIRTTL--DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKL 255
Query: 46 GDSSLMQLKEEFR-------------------TYESLRREHDAQIVEIATEAGLR----- 81
+ +L+ + ++ES + + + G+R
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF-FVSVRKAITVLFFIGVRCYEAY 314
Query: 82 ----IAPDQWSSLLYGDASRKSHM-----------QSIIDKLQNPQSFAQSVQVSRTRSP 126
+ P L + S M Q ++K + + V++S
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 127 S-------P-SLYRSVEPAVLRPVCTVQGSNPTSCTLSR-PM-QRKL 163
P SLY LR P+ SR P +RKL
Sbjct: 375 KNLVVSGPPQSLYGLN--LTLRKAKA-----PSGLDQSRIPFSERKL 414
Score = 33.9 bits (77), Expect = 0.043
Identities = 20/136 (14%), Positives = 44/136 (32%), Gaps = 39/136 (28%)
Query: 52 QLKEEFRTYESLRREHDAQIVEIATEAGL----------RIAPDQWSSL----------- 90
QL+E+F E A E T A L + P +
Sbjct: 32 QLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF 91
Query: 91 ----LYGD------ASRKSHMQSIIDKLQNP-QSFAQSVQVSR---TRSPSPSLYRSVEP 136
L G+ A + + K + +++ + +++ + + +L+R+V
Sbjct: 92 ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151
Query: 137 AVLRPVCTV---QGSN 149
+ + + QG+
Sbjct: 152 GNAQ-LVAIFGGQGNT 166
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.005
Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 11/104 (10%)
Query: 12 LSTDRFWNVTLDLDSIPVNFALLQLVGVKVSKREGDSSLMQ-LKEEFRTYESLRRE---- 66
L T RF VT L + L + ++ E S L++ L + L RE
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP---QDLPREVLTT 325
Query: 67 HDAQIVEIATEAGLRIAPDQWSSLLYGDASRKSH-MQSIIDKLQ 109
+ ++ IA +R W + + + + + ++S ++ L+
Sbjct: 326 NPRRLSIIA--ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Score = 29.1 bits (64), Expect = 1.7
Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 32/106 (30%)
Query: 15 DRFWNVTLDLDSIPVNFALLQLVGVKV----SKREGDSSLMQLKEEFRTYESLRREHDAQ 70
F V LD F + K+ + S++ ++ + Y+ ++D +
Sbjct: 491 TLFRMVFLDF-----RF-----LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 71 -------IVEIATEAG-----------LRIAPDQWSSLLYGDASRK 98
I++ + LRIA ++ +A ++
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase; HET: GLU ATP; 1.80A {Thermus
thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A*
1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A*
1g59_A 1gln_A
Length = 468
Score = 28.3 bits (64), Expect = 2.6
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 38 GVKVSKREGDSSLMQLKEE 56
K+SKR+ +SL K E
Sbjct: 241 KTKISKRKSHTSLDWYKAE 259
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural
genomics, PSI-2, Pro structure initiative; HET: MSE
AMP; 1.79A {Escherichia coli k-12}
Length = 140
Score = 27.1 bits (61), Expect = 2.7
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 8/32 (25%)
Query: 66 EHDAQIVEIATEAGLRIAPDQWSSLLYGDASR 97
E V+ E G+R + G+A+
Sbjct: 37 ETSRTRVDELRERGVRA--------VLGNAAN 60
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase
2; protein-RNA complex, ligase-RNA complex; HET: GSU;
3.37A {Thermotoga maritima}
Length = 592
Score = 28.0 bits (63), Expect = 3.1
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 38 GVKVSKREGDSSLMQLKEE 56
+SKR G +S+ + E
Sbjct: 357 RTPLSKRHGATSVEHFRRE 375
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex,
aminoacyl-tRNA synthetase, ATP-binding, ligase,
nucleotide-binding; HET: GSU; 2.00A {Thermotoga
maritima} PDB: 3akz_B*
Length = 488
Score = 27.9 bits (63), Expect = 3.2
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 38 GVKVSKREGDSSLMQLKEE 56
+SKR G +S+ + E
Sbjct: 253 RTPLSKRHGATSVEHFRRE 271
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 27.6 bits (62), Expect = 4.4
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 57 FRTYESLRREHDAQIVEIATEAG 79
R YE+ R + +V A +
Sbjct: 345 LREYEAQRCDRVRDLVLKARKRC 367
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 27.3 bits (61), Expect = 5.2
Identities = 2/26 (7%), Positives = 11/26 (42%)
Query: 57 FRTYESLRREHDAQIVEIATEAGLRI 82
+++E+ + + + + R+
Sbjct: 343 LQSWETRQLQQGHAYLNKVKKMASRL 368
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase
1, glurs 1, structural genomics, joint center for ST
genomics, JCSG; 2.34A {Thermotoga maritima}
Length = 481
Score = 27.1 bits (61), Expect = 5.6
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 38 GVKVSKREGDSSLMQLKEE 56
G K+SKR G +S+ ++
Sbjct: 260 GKKLSKRHGATSVEAFRDM 278
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266,
NESG, PAR240, structural genomics, PSI-2; HET: FAD;
1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2
d.16.1.2 PDB: 2rgj_A*
Length = 410
Score = 26.5 bits (59), Expect = 9.9
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 57 FRTYESLRREHDAQIVEIATEAG 79
R YE RR +I+ E
Sbjct: 347 LREYEEARRPTANKIILANRERE 369
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.130 0.378
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,347,554
Number of extensions: 182650
Number of successful extensions: 349
Number of sequences better than 10.0: 1
Number of HSP's gapped: 347
Number of HSP's successfully gapped: 18
Length of query: 237
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 146
Effective length of database: 4,160,982
Effective search space: 607503372
Effective search space used: 607503372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)