RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17485
         (237 letters)



>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 83

 Score = 27.4 bits (61), Expect = 0.51
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 4/36 (11%)

Query: 30 NFALLQLVGVKVSKREGD----SSLMQLKEEFRTYE 61
          +F   QL  +K    EGD    SS ++L+E FR YE
Sbjct: 35 SFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYE 70


>d1gg4a1 c.59.1.1 (A:313-447) UDP-murNac-tripeptide
           D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli
           [TaxId: 562]}
          Length = 135

 Score = 26.0 bits (56), Expect = 3.2
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 64  RREHDAQIVEIATEAGLRIAPDQWSSLLYGDASRKSHMQSIIDKLQ 109
             EH A    + T   L IA  Q  ++L    SR + M+ ++  LQ
Sbjct: 91  VGEHFADKTALITRLKLLIAEQQVITILV-KGSRSAAMEEVVRALQ 135


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.130    0.378 

Gapped
Lambda     K      H
   0.267   0.0396    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 794,146
Number of extensions: 32564
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 5
Length of query: 237
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 154
Effective length of database: 1,268,006
Effective search space: 195272924
Effective search space used: 195272924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)