BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17486
(172 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/157 (56%), Positives = 105/157 (66%), Gaps = 26/157 (16%)
Query: 16 NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
N V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDA
Sbjct: 86 NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA 145
Query: 76 VVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDF 135
VVA QYK+NPEMF TAR W +VYAG P +P++
Sbjct: 146 VVANQYKQNPEMFKQTARLW--------------------------AHVYAGAPVSSPEY 179
Query: 136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
KI+ L MG + VALS+ +W++E ATE + +
Sbjct: 180 TKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLS 216
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/157 (56%), Positives = 105/157 (66%), Gaps = 26/157 (16%)
Query: 16 NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
N V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDA
Sbjct: 71 NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA 130
Query: 76 VVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDF 135
VVA QYK+NPEMF TAR W +VYAG P +P++
Sbjct: 131 VVANQYKQNPEMFKQTARLW--------------------------AHVYAGAPVSSPEY 164
Query: 136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
KI+ L MG + VALS+ +W++E ATE + +
Sbjct: 165 TKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLS 201
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/157 (56%), Positives = 105/157 (66%), Gaps = 26/157 (16%)
Query: 16 NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
N V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDA
Sbjct: 70 NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA 129
Query: 76 VVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDF 135
VVA QYK+NPEMF TAR W +VYAG P +P++
Sbjct: 130 VVANQYKQNPEMFKQTARLW--------------------------AHVYAGAPVSSPEY 163
Query: 136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
KI+ L MG + VALS+ +W++E ATE + +
Sbjct: 164 TKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLS 200
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 148 bits (374), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/157 (56%), Positives = 104/157 (66%), Gaps = 26/157 (16%)
Query: 16 NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
N V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDA
Sbjct: 122 NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA 181
Query: 76 VVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDF 135
VVA QYK+NPEMF TAR W +VYAG P +P++
Sbjct: 182 VVANQYKQNPEMFKQTARLW--------------------------AHVYAGAPVSSPEY 215
Query: 136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
KI+ L G + VALS+ +W++E ATE + +
Sbjct: 216 TKKIENLCAAGFDRNAVIVALSSKSWDVETATELLLS 252
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/86 (84%), Positives = 78/86 (90%)
Query: 16 NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
N V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDA
Sbjct: 73 NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA 132
Query: 76 VVAKQYKENPEMFTLTARHWTNVYAG 101
VVA QYK+NPEMF TAR W +VYAG
Sbjct: 133 VVANQYKQNPEMFKQTARLWAHVYAG 158
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 123 bits (309), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 86/146 (58%), Gaps = 27/146 (18%)
Query: 16 NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
N +KF+TKIWHPNISS TGAICLD+LK++W+ A+T+RT LLS+QAL++ +PDDPQDA
Sbjct: 85 NPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDA 144
Query: 76 VVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDF 135
VAK YKEN +F TA WT +A GP + P
Sbjct: 145 EVAKMYKENHALF--------------------------VKTASVWTKTFATGPKEEPR- 177
Query: 136 DSKIQRLTDMGVMSHDARVALSTYNW 161
+ I+++T+MG A+ AL NW
Sbjct: 178 EVIIKKITEMGFSEDQAKNALIKANW 203
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 63/85 (74%)
Query: 16 NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
N +KF+TKIWHPNISS TGAICLDILK +W+ A+T+RT LLS+QA++A P DPQDA
Sbjct: 107 NPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDA 166
Query: 76 VVAKQYKENPEMFTLTARHWTNVYA 100
VAK EN +F TA+ WT +A
Sbjct: 167 EVAKMMIENHPLFVQTAKLWTETFA 191
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 105 bits (263), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 54/111 (48%), Positives = 72/111 (64%), Gaps = 5/111 (4%)
Query: 7 KFVTKIWHP-----NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQ 61
KFV I P ++F TK++HPNISSVTGAICLDIL++ W+ +TL++ L+SLQ
Sbjct: 51 KFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQ 110
Query: 62 ALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPE 112
AL+ + EP+DPQDA VA+ Y + E F TA WT +YA + K N E
Sbjct: 111 ALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASETSNGQKGNVE 161
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/99 (52%), Positives = 68/99 (68%), Gaps = 5/99 (5%)
Query: 7 KFVTKIWHP-----NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQ 61
KFV I P ++F TK++HPNISSVTGAICLDILK+ W+ +TL++ L+SLQ
Sbjct: 50 KFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQ 109
Query: 62 ALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 100
AL+ + EP+DPQDA VA+ Y + E F TA WT +YA
Sbjct: 110 ALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 148
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 61/81 (75%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V+FLTKI+HPNI + G ICLDILKD+W+ A+ +RTVLLS+QAL+++ EPDDP D+ VA+
Sbjct: 67 VRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAE 125
Query: 80 QYKENPEMFTLTARHWTNVYA 100
+K++ AR W +YA
Sbjct: 126 HFKQDKNDAEHVARQWNKIYA 146
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
Query: 19 SVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVA 78
V+FLTKI+HPNI + G ICLDILKD+W+ A+ +RTVLLS+QAL+++ EPDDP D+ VA
Sbjct: 66 KVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVA 124
Query: 79 KQYKENPEMFTLTARHWTNVYA 100
+ +K++ AR W +YA
Sbjct: 125 EHFKQDKNDAEHVARQWNKIYA 146
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V+F+TKI+HPN+ + G ICLDILKD+W+ A+ +RTVLLS+QAL++A PDDP VA+
Sbjct: 71 VRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAE 129
Query: 80 QYKENPEMFTLTARHWTNVYA 100
Q+K N TAR WT +YA
Sbjct: 130 QWKTNEAQAIETARAWTRLYA 150
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V+F+TKI+HPN+ + G ICLDILKD+W+ A+ +RTVLLS+QAL++A PDDP VA+
Sbjct: 74 VRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAE 132
Query: 80 QYKENPEMFTLTARHWTNVYA 100
Q+K N TAR WT +YA
Sbjct: 133 QWKTNEAQAIETARAWTRLYA 153
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V+F+TKI+HPN+ + G ICLDILKD+W+ A+ +RTVLLS+QAL++A PDDP VA+
Sbjct: 67 VRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAE 125
Query: 80 QYKENPEMFTLTARHWTNVYA 100
Q+K N TAR WT +YA
Sbjct: 126 QWKTNEAQAIETARAWTRLYA 146
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V+F+TKI+HPN+ + G ICLDILKD+W+ A+ +RTVLLS+QAL++A PDDP VA+
Sbjct: 72 VRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAE 130
Query: 80 QYKENPEMFTLTARHWTNVYA 100
Q+K N TAR WT +YA
Sbjct: 131 QWKTNEAQAIETARAWTRLYA 151
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 94.0 bits (232), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V+F+TKI+HPN+ + G ICLDILKD+W+ A+ +RTVLLS+QAL++A PDDP VA+
Sbjct: 69 VRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAE 127
Query: 80 QYKENPEMFTLTARHWTNVYA 100
Q+K N TAR WT +YA
Sbjct: 128 QWKTNEAQAIETARAWTRLYA 148
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V F+TK++HPNI+ G ICLDILKDQW+ A+TL VLLS+ +L+ P DP D VA
Sbjct: 70 VTFMTKVYHPNINK-NGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVAN 128
Query: 80 QYKENPEMFTLTARHWTNVYA 100
+ N + F TAR WT +YA
Sbjct: 129 VLRANKKQFEDTAREWTRMYA 149
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V F T+I+HPNI+S G+ICLDIL+DQW+ A+T+ VLLS+ +L+ PDDP +A
Sbjct: 67 VNFTTRIYHPNINS-NGSICLDILRDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAH 125
Query: 80 QYKENPEMFTLTARHWTNVYA 100
YK + + L+AR WT YA
Sbjct: 126 VYKTDRSRYELSAREWTRKYA 146
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V F TKI+HPNI+S GAICLDILKDQW+ A+T+ VLLS+ +L+ PDDP +A
Sbjct: 87 VNFTTKIYHPNINS-QGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAH 145
Query: 80 QYKENPEMFTLTARHWTNVYA 100
YK + + TAR W+ YA
Sbjct: 146 LYKSDRMRYDQTAREWSQKYA 166
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V+FLTKI+HPNI + G ICLD+LK W+ A+ +RTVLLS+QAL+A+ P+DP VA+
Sbjct: 71 VRFLTKIYHPNIDRL-GRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAE 129
Query: 80 QYKENPEMFTLTARHWTNVYA 100
+ +N + AR WT +YA
Sbjct: 130 DWIKNEQGAKAKAREWTKLYA 150
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V+FLTKI+HPNI + G ICLD+LK W+ A+ +RTVLLS+QAL+A+ P+DP VA+
Sbjct: 69 VRFLTKIYHPNIDRL-GRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAE 127
Query: 80 QYKENPEMFTLTARHWTNVYA 100
+ +N + AR WT +YA
Sbjct: 128 DWIKNEQGAKAKAREWTKLYA 148
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
+ F TKI+HPNI++ G ICLDILKDQW+ A+TL VLLS+ +L+ A PDDP +A
Sbjct: 68 ISFTTKIYHPNINA-NGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAH 126
Query: 80 QYKENPEMFTLTARHWTNVYA 100
YK + + TAR WT YA
Sbjct: 127 IYKTDRPKYEATAREWTKKYA 147
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 82.8 bits (203), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V F T+I+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+ PDDP +A+
Sbjct: 85 VAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 143
Query: 80 QYKENPEMFTLTARHWTNVYA 100
YK + E + AR WT YA
Sbjct: 144 IYKTDREKYNRIAREWTQKYA 164
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V F T+I+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+ PDDP +A+
Sbjct: 69 VAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 127
Query: 80 QYKENPEMFTLTARHWTNVYA 100
YK + E + AR WT YA
Sbjct: 128 IYKTDREKYNRIAREWTQKYA 148
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V F T+I+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+ PDDP +A+
Sbjct: 72 VAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 130
Query: 80 QYKENPEMFTLTARHWTNVYA 100
YK + E + AR WT YA
Sbjct: 131 IYKTDREKYNRIAREWTQKYA 151
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V F T+I+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+ PDDP +A+
Sbjct: 67 VAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 125
Query: 80 QYKENPEMFTLTARHWTNVYA 100
YK + E + AR WT YA
Sbjct: 126 IYKTDREKYNRIAREWTQKYA 146
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V F T+I+HPNI+S G+ICLDIL+ QW A+T+ VLLS+ +L+ PDDP +A+
Sbjct: 69 VAFTTRIYHPNINS-NGSICLDILRSQWGPALTISKVLLSICSLLCDPNPDDPLVPEIAR 127
Query: 80 QYKENPEMFTLTARHWTNVYA 100
YK + E + AR WT YA
Sbjct: 128 IYKTDREKYNRIAREWTQKYA 148
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V F T+I+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+ PDDP +A+
Sbjct: 69 VAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 127
Query: 80 QYKENPEMFTLTARHWTNVYA 100
YK + E + AR WT YA
Sbjct: 128 IYKTDREKYNRIAREWTQKYA 148
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V F T+I+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+ PDDP +A+
Sbjct: 69 VAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 127
Query: 80 QYKENPEMFTLTARHWTNVYA 100
YK + E + AR WT YA
Sbjct: 128 IYKTDREKYNRIAREWTQKYA 148
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V F T+I+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+ PDDP +A+
Sbjct: 70 VAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 128
Query: 80 QYKENPEMFTLTARHWTNVYA 100
YK + E + AR WT YA
Sbjct: 129 IYKTDRERYNQLAREWTQKYA 149
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
+ F TKI+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+ PDDP +A+
Sbjct: 85 IAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQ 143
Query: 80 QYKENPEMFTLTARHWTNVYA 100
YK + E + AR WT YA
Sbjct: 144 IYKSDKEKYNRHAREWTQKYA 164
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
+ F TKI+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+ PDDP +A+
Sbjct: 73 IAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQ 131
Query: 80 QYKENPEMFTLTARHWTNVYA 100
YK + E + AR WT YA
Sbjct: 132 IYKSDKEKYNRHAREWTQKYA 152
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
+ F TKI+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+ PDDP +A+
Sbjct: 69 IAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQ 127
Query: 80 QYKENPEMFTLTARHWTNVYA 100
YK + E + AR WT YA
Sbjct: 128 IYKSDKEKYNRHAREWTQKYA 148
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V F TKI+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+ PDDP +A
Sbjct: 72 VAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAH 130
Query: 80 QYKENPEMFTLTARHWTNVYA 100
YK + E + AR WT YA
Sbjct: 131 IYKSDKEKYNRLAREWTQKYA 151
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V F T+I+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+ PDDP +A+
Sbjct: 77 VAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 135
Query: 80 QYKENPEMFTLTARHWTNVYA 100
Y+ + E + AR WT YA
Sbjct: 136 IYQTDREKYNRIAREWTQKYA 156
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V+FLTKI+HPNI + G I LD+LK W+ A+ +RTVLLS+QAL+A+ P+DP VA+
Sbjct: 69 VRFLTKIYHPNIDRL-GRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAE 127
Query: 80 QYKENPEMFTLTARHWTNVYA 100
+ +N + AR WT +YA
Sbjct: 128 DWIKNEQGAKAKAREWTKLYA 148
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V F T+I+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+ PDDP +A+
Sbjct: 75 VAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 133
Query: 80 QYKENPEMFTLTARHWTNVYA 100
YK + + + +R WT YA
Sbjct: 134 IYKTDRDKYNRISREWTQKYA 154
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V F T+I+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+ PDDP +A+
Sbjct: 69 VAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 127
Query: 80 QYKENPEMFTLTARHWTNVYA 100
YK + + + +R WT YA
Sbjct: 128 IYKTDRDKYNRISREWTQKYA 148
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V F T+I+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+ PDDP +A+
Sbjct: 77 VAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 135
Query: 80 QYKENPEMFTLTARHWTNVYA 100
YK + + + +R WT YA
Sbjct: 136 IYKTDRDKYNRISREWTQKYA 156
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V F T+I+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+ PDDP +A+
Sbjct: 66 VAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 124
Query: 80 QYKENPEMFTLTARHWTNVYA 100
YK + + + +R WT YA
Sbjct: 125 IYKTDRDKYNRISREWTQKYA 145
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V F T+I+HPNI+S G+ICLD L+ QW+ A+T+ VLLS+ +L+ PDDP +A+
Sbjct: 69 VAFTTRIYHPNINS-NGSICLDALRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 127
Query: 80 QYKENPEMFTLTARHWTNVYA 100
YK + E + AR WT YA
Sbjct: 128 IYKTDREKYNRIAREWTQKYA 148
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V F T+I+HPNI+S G+I LDIL+ QW+ A+T+ VLLS+ +L+ PDDP +A+
Sbjct: 69 VAFTTRIYHPNINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 127
Query: 80 QYKENPEMFTLTARHWTNVYA 100
YK + E + AR WT YA
Sbjct: 128 IYKTDREKYNRIAREWTQKYA 148
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V F T+I+HPNI+S G+I LDIL+ QW+ A+T+ VLLS+ +L+ PDDP +A+
Sbjct: 70 VAFTTRIYHPNINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 128
Query: 80 QYKENPEMFTLTARHWTNVYA 100
YK + E + AR WT YA
Sbjct: 129 IYKTDREKYNRIAREWTQKYA 149
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V F T+I+HPNI+S G+I LDIL+ QW+ A+T+ VLLS+ +L+ PDDP +A+
Sbjct: 85 VAFTTRIYHPNINS-NGSIXLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 143
Query: 80 QYKENPEMFTLTARHWTNVYA 100
YK + E + AR WT YA
Sbjct: 144 IYKTDREKYNRIAREWTQKYA 164
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V+FLTKI+HP I + G I LD+LK W+ A+ +RTVLLS+QAL+A+ P+DP VA+
Sbjct: 69 VRFLTKIYHPAIDRL-GRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAE 127
Query: 80 QYKENPEMFTLTARHWTNVYA 100
+ +N + AR WT +YA
Sbjct: 128 DWIKNEQGAKAKAREWTKLYA 148
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
+ F TKI+HPNI+S G+I LDIL+ QW+ A+T+ VLLS+ +L+ PDDP +A+
Sbjct: 73 IAFTTKIYHPNINS-NGSIKLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQ 131
Query: 80 QYKENPEMFTLTARHWTNVYA 100
YK + E + AR WT YA
Sbjct: 132 IYKSDKEKYNRHAREWTQKYA 152
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V F T+I+HPNI+S G+I LDIL+ QW+ A+ + VLLS+ +L+ PDDP +A+
Sbjct: 66 VAFTTRIYHPNINS-NGSISLDILRSQWSPALKISKVLLSICSLLCDPNPDDPLVPEIAR 124
Query: 80 QYKENPEMFTLTARHWTNVYA 100
YK + E + AR WT YA
Sbjct: 125 IYKTDREKYNRIAREWTQKYA 145
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V F T+I+HPNI+S G+I LDIL+ QW+ A+T+ VLLS+ +L+ PDDP +A+
Sbjct: 67 VAFTTRIYHPNINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 125
Query: 80 QYKENPEMFTLTARHWTNVYA 100
YK + + + +R WT YA
Sbjct: 126 IYKTDRDKYNRISREWTQKYA 146
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V F T+I+HP I+S G+I LDIL+ QW+ A+T+ VLLS+ +L+ PDDP +A+
Sbjct: 67 VAFTTRIYHPAINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 125
Query: 80 QYKENPEMFTLTARHWTNVYA 100
YK + E + AR WT YA
Sbjct: 126 IYKTDREKYNRIAREWTQKYA 146
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V F T+I+H NI+S G ICLDILKD W+ A+T+ VLLS+ +L+ P DP +A
Sbjct: 114 VTFRTRIYHCNINS-QGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIAT 172
Query: 80 QYKENPEMFTLTARHWTNVYA 100
QY N AR WT YA
Sbjct: 173 QYMTNRAEHDRMARQWTKRYA 193
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V F T+I+H NI+S G ICLDILKD W+ A+T+ VLLS+ +L+ P DP +A
Sbjct: 69 VTFRTRIYHCNINS-QGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIAT 127
Query: 80 QYKENPEMFTLTARHWTNVYA 100
QY N AR WT YA
Sbjct: 128 QYMTNRAEHDRMARQWTKRYA 148
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 56/100 (56%), Gaps = 7/100 (7%)
Query: 19 SVKFLTKIWHPNISSVTGAICLDILK----DQWAAAMTLRTVLLSLQALMAAAEPDDPQD 74
++FLT I+HPNI S G ICLD+LK W ++ + TVL S+Q LM+ PDDP
Sbjct: 69 QIRFLTPIYHPNIDSA-GRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLM 127
Query: 75 AVVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMF 114
A ++ ++K N F AR WT +A KQ + EM
Sbjct: 128 ADISSEFKYNKPAFLKNARQWTEKHAR--QKQKADEEEML 165
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 56/85 (65%), Gaps = 4/85 (4%)
Query: 3 DTTVKFVTKI--WHPN-ISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLS 59
D T K V + +PN +V+FL+K++HPN+ + G+ICLDIL+++W+ + ++L S
Sbjct: 50 DGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYA-DGSICLDILQNRWSPTYDVSSILTS 108
Query: 60 LQALMAAAEPDDPQDAVVAKQYKEN 84
+Q+L+ P+ P ++ A+ Y+EN
Sbjct: 109 IQSLLDEPNPNSPANSQAAQLYQEN 133
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 51/72 (70%), Gaps = 2/72 (2%)
Query: 14 HPN-ISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDP 72
+PN +VKF++K++HPN+ + G+ICLDIL+++W+ + +L S+Q+L+ P+ P
Sbjct: 66 YPNKPPTVKFISKMFHPNVYA-DGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSP 124
Query: 73 QDAVVAKQYKEN 84
+++ A+ Y+EN
Sbjct: 125 ANSLAAQLYQEN 136
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 51/72 (70%), Gaps = 2/72 (2%)
Query: 14 HPN-ISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDP 72
+PN +VKF++K++HPN+ + G+ICLDIL+++W+ + +L S+Q+L+ P+ P
Sbjct: 63 YPNKPPTVKFISKMFHPNVYA-DGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSP 121
Query: 73 QDAVVAKQYKEN 84
+++ A+ Y+EN
Sbjct: 122 ANSLAAQLYQEN 133
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVA 78
VKF T WHPN+ +G ICLDILK+ W A+ +RT+LLSLQ+L+ P +A A
Sbjct: 75 VKFTTPCWHPNVDQ-SGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAA 132
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 16 NISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
N +VKFLT +HPN+ + G I LDILK++W+A +RT+LLS+Q+L+ D P +
Sbjct: 92 NAPTVKFLTPCYHPNVDT-QGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNT 150
Query: 76 VVAKQYKENPEMF 88
A+ +K NP F
Sbjct: 151 HAAELWK-NPTAF 162
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 19 SVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVA 78
+V+F+++++HPNI + G+ICLDIL++QW+ + +L S+Q+L+ P+ P ++ A
Sbjct: 69 TVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAA 127
Query: 79 KQYKENPEMFTLTAR 93
+ Y E+ + R
Sbjct: 128 RMYSESKREYNRRVR 142
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 19 SVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLS-LQALMAAAEPDDPQDAVV 77
S+ F+ KI+HPNI +G +CLD++ W A L + S L L+A P DP +
Sbjct: 86 SIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDA 145
Query: 78 AKQYKENPEMFTLTARHWTNVYA 100
A Y PE + + + YA
Sbjct: 146 AAMYLHRPEEYKQKIKEYIQKYA 168
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 22 FLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY 81
FLTKI+HPN+ + G IC+++LK W A + +R VLL+++ L+ P+ + +
Sbjct: 81 FLTKIFHPNVGA-NGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLL 139
Query: 82 KENPEMFTLTARHWTNVYA 100
EN E + AR T ++
Sbjct: 140 LENYEEYAARARLLTEIHG 158
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
VK T ++HPNI + G +CL+IL++ W +T+ +++ LQ L P+DP + A+
Sbjct: 70 VKCETXVYHPNID-LEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAE 128
Query: 80 QYKENPEMFTLTARHWTNVYAGVVAKQYKE 109
+ N +F + + G + Y E
Sbjct: 129 VLQNNRRLFEQNVQR--SXRGGYIGSTYFE 156
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
VKFL++++HPN+ + G ICLDIL+++W + ++L S+Q+L P P + A
Sbjct: 70 VKFLSEMFHPNVYA-NGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAAT 128
Query: 80 QYKEN 84
+K++
Sbjct: 129 LFKDH 133
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 23 LTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYK 82
L KI+HPNI + G +CL+IL++ W+ A+ L++++ L L P+DP + AK
Sbjct: 102 LKKIFHPNID-LKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLC 160
Query: 83 ENPEMFTLTAR 93
E + F R
Sbjct: 161 EGEKEFAEAVR 171
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 19 SVKFLTKIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
+ F TKI+HPNI G +CL ++ + W A V+ SL AL+ +P+ P A +
Sbjct: 69 KITFKTKIYHPNIDE-KGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADL 127
Query: 78 AKQYKENPEMFTLTARHWTNVYA 100
A++Y ++ + F A +T Y
Sbjct: 128 AEEYSKDRKKFCKNAEEFTKKYG 150
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 19 SVKFLTKIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
+ F TKI+HPNI G +CL ++ + W A V+ SL AL+ +P+ P A +
Sbjct: 67 KITFKTKIYHPNIDE-KGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADL 125
Query: 78 AKQYKENPEMFTLTARHWTNVYA 100
A++Y ++ + F A +T Y
Sbjct: 126 AEEYSKDRKKFCKNAEEFTKKYG 148
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
VK T ++HPNI + G + L+IL++ W +T+ +++ LQ L P+DP + A+
Sbjct: 90 VKCETMVYHPNID-LEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAE 148
Query: 80 QYKENPEMFTLTARHWTNVYAGVVAKQYKE 109
+ N +F + ++ G + Y E
Sbjct: 149 VLQNNRRLFEQNVQR--SMRGGYIGSTYFE 176
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 19 SVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVL-LSLQALMAAAEPDDPQDAVV 77
S+ F+ K+ HPN+ +G++CLD++ W +L V + L L+ P DP ++
Sbjct: 64 SIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDA 123
Query: 78 AKQYKENPEMFTLTARHWTNVYA 100
A ++ ++ + + +YA
Sbjct: 124 ASLLMKDKNIYEEKVKEYVKLYA 146
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 14/78 (17%)
Query: 20 VKFLTKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLRTVLLSLQALMAA 66
+KF+T+IWHPN+ G +C+ IL +++W T+ T+++S+ +++A
Sbjct: 84 MKFITEIWHPNVDK-NGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLAD 142
Query: 67 AEPDDPQDAVVAKQYKEN 84
D P + AK+++E+
Sbjct: 143 PNGDSPANVDAAKEWRED 160
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 20 VKFLTKIWHPNISSVTGAICLDIL-KDQ-WAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
VKF +HPN+ +G ICL IL +DQ W A+TL+ ++L +Q L+ + P+ P
Sbjct: 77 VKFPAGFYHPNVYP-SGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPA 135
Query: 78 AKQYKEN 84
+ + N
Sbjct: 136 WRSFSRN 142
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 20 VKFLTKIWHPNISSVTGAICLDIL-KDQ-WAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
VKF +HPN+ +G ICL IL +DQ W A+TL+ ++L +Q L+ + P+ P
Sbjct: 75 VKFPAGFYHPNVYP-SGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPA 133
Query: 78 AKQYKEN 84
+ + N
Sbjct: 134 WRSFSRN 140
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 22/107 (20%)
Query: 1 MVDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQ------WAAAMTLR 54
MV VK +TKIWHPNI+ TG ICL +L++ WA TL+
Sbjct: 75 MVPPKVKCLTKIWHPNITE---------------TGEICLSLLREHSIDGTGWAPTRTLK 119
Query: 55 TVLLSLQALMA-AAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 100
V+ L +L DDP + A+ + + E F + YA
Sbjct: 120 DVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYA 166
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 22/107 (20%)
Query: 1 MVDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQ------WAAAMTLR 54
MV VK +TKIWHPNI+ TG ICL +L++ WA TL+
Sbjct: 75 MVPPKVKCLTKIWHPNITE---------------TGEICLSLLREHSIDGTGWAPTRTLK 119
Query: 55 TVLLSLQALMA-AAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 100
V+ L +L DDP + A+ + + E F + YA
Sbjct: 120 DVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYA 166
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 14/78 (17%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKD-------------QWAAAMTLRTVLLSLQALMAA 66
+KF+++IWHPNI G +C+ IL D +W T+ T+LLS+ +++
Sbjct: 70 MKFISEIWHPNIDK-EGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTD 128
Query: 67 AEPDDPQDAVVAKQYKEN 84
+ P + AK +EN
Sbjct: 129 PNFESPANVDAAKMQREN 146
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILK--DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
VKF+T +HPN+ TG C+D L ++W TL ++LL+LQ +++ ++P +
Sbjct: 89 VKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEA 148
Query: 78 AK 79
A+
Sbjct: 149 AR 150
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
KF ++HPN++ +G +CL IL++ W A+T++ +LL +Q L+ DP A
Sbjct: 78 CKFEPPLFHPNVAP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 136
Query: 78 AKQYKEN 84
Y +N
Sbjct: 137 YTIYCQN 143
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 19 SVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVL-LSLQALMAAAEPDDPQDAVV 77
S+ F +I HPN+ +G++CLD++ W L + + L L+ P DP +
Sbjct: 73 SIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQA 132
Query: 78 A 78
A
Sbjct: 133 A 133
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
KF ++HPN+ +G +CL IL++ W A+T++ +LL +Q L+ DP A
Sbjct: 78 CKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 136
Query: 78 AKQYKEN 84
Y +N
Sbjct: 137 YTIYCQN 143
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
KF ++HPN+ +G +CL IL++ W A+T++ +LL +Q L+ DP A
Sbjct: 77 CKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 135
Query: 78 AKQYKEN 84
Y +N
Sbjct: 136 YTIYCQN 142
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
KF ++HPN+ +G +CL IL++ W A+T++ +LL +Q L+ DP A
Sbjct: 76 CKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 134
Query: 78 AKQYKEN 84
Y +N
Sbjct: 135 YTIYCQN 141
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
KF ++HPN+ +G +CL IL++ W A+T++ +LL +Q L+ DP A
Sbjct: 77 CKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 135
Query: 78 AKQYKEN 84
Y +N
Sbjct: 136 YTIYCQN 142
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
KF ++HPN+ +G +CL IL++ W A+T++ +LL +Q L+ DP A
Sbjct: 80 CKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 138
Query: 78 AKQYKEN 84
Y +N
Sbjct: 139 YTIYCQN 145
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
KF ++HPN+ +G +CL IL++ W A+T++ +LL +Q L+ DP A
Sbjct: 75 CKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 133
Query: 78 AKQYKEN 84
Y +N
Sbjct: 134 YTIYCQN 140
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 17/82 (20%)
Query: 19 SVKFLTKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLRTVLLSLQALMA 65
+ +FLTK+WHPNI TG +C+ IL ++W +RT+LLS+ +L+
Sbjct: 70 AFRFLTKMWHPNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLN 128
Query: 66 AAEPDDPQD---AVVAKQYKEN 84
P + +V+ +++KE+
Sbjct: 129 EPNTFSPANVDASVMYRKWKES 150
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 17/82 (20%)
Query: 19 SVKFLTKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLRTVLLSLQALMA 65
+ +FLTK+WHPNI TG +C+ IL ++W +RT+LLS+ +L+
Sbjct: 73 AFRFLTKMWHPNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLN 131
Query: 66 AAEPDDPQD---AVVAKQYKEN 84
P + +V+ +++KE+
Sbjct: 132 EPNTFSPANVDASVMYRKWKES 153
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 14/93 (15%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
+F ++HPN+ +G +CL IL ++ W A+T++ +LL +Q L+ DDP A
Sbjct: 81 CRFTPPLFHPNVYP-SGTVCLSILNEEEGWKPAITIKQILLGIQDLL-----DDPNIASP 134
Query: 78 AKQYKENPEMFTLTARHWTNVYAGVVAKQYKEN 110
A+ E +T+ + Y V Q +EN
Sbjct: 135 AQT-----EAYTMFKKDKVE-YEKRVRAQAREN 161
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
KF ++HP + +G +CL IL++ W A+T++ +LL +Q L+ DP A
Sbjct: 78 CKFEPPLFHPQVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 136
Query: 78 AKQYKEN 84
Y +N
Sbjct: 137 YTIYCQN 143
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 16/92 (17%)
Query: 6 VKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDIL-KDQWAAAMTLRTVLLSLQALM 64
+KF TKI+HPN+ G ICL I+ + W VL +L L+
Sbjct: 70 IKFTTKIYHPNVDE---------------NGQICLPIISSENWKPCTKTCQVLEALNVLV 114
Query: 65 AAAEPDDPQDAVVAKQYKENPEMFTLTARHWT 96
+P +A +NPE+F A +T
Sbjct: 115 NRPNIREPLRMDLADLLTQNPELFRKNAEEFT 146
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 16/92 (17%)
Query: 6 VKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDIL-KDQWAAAMTLRTVLLSLQALM 64
+KF TKI+HPN+ G ICL I+ + W VL +L L+
Sbjct: 67 IKFTTKIYHPNVDE---------------NGQICLPIISSENWKPCTKTCQVLEALNVLV 111
Query: 65 AAAEPDDPQDAVVAKQYKENPEMFTLTARHWT 96
+P +A +NPE+F A +T
Sbjct: 112 NRPNIREPLRMDLADLLTQNPELFRKNAEEFT 143
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
KF ++HPN+ +G + L IL++ W A+T++ +LL +Q L+ DP A
Sbjct: 75 CKFEPPLFHPNVYP-SGTVXLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 133
Query: 78 AKQYKEN 84
Y +N
Sbjct: 134 YTIYXQN 140
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
KF ++HPN+ +G + L IL++ W A+T++ +LL +Q L+ DP A
Sbjct: 75 CKFEPPLFHPNVYP-SGTVSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 133
Query: 78 AKQYKEN 84
Y +N
Sbjct: 134 YTIYCQN 140
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 18/98 (18%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALMAA 66
++F +++HPNI G +C+ IL ++W+ ++ +LLS+ +++
Sbjct: 76 MRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSML-- 132
Query: 67 AEPDDPQDAVV--AKQYKENPEMFTLTARHWTNVYAGV 102
AEP+D A V +K ++++ E F A+ G+
Sbjct: 133 AEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSLGL 170
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 18/98 (18%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALMAA 66
++F +++HPNI G +C+ IL ++W+ ++ +LLS+ +++
Sbjct: 73 MRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSML-- 129
Query: 67 AEPDDPQDAVV--AKQYKENPEMFTLTARHWTNVYAGV 102
AEP+D A V +K ++++ E F A+ G+
Sbjct: 130 AEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSLGL 167
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 18/98 (18%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALMAA 66
++F +++HPNI G +C+ IL ++W+ ++ +LLS+ +++
Sbjct: 74 MRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSML-- 130
Query: 67 AEPDDPQDAVV--AKQYKENPEMFTLTARHWTNVYAGV 102
AEP+D A V +K ++++ E F A+ G+
Sbjct: 131 AEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSLGL 168
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 18/98 (18%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALMAA 66
++F +++HPNI G +C+ IL ++W+ ++ +LLS+ +++
Sbjct: 70 MRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSML-- 126
Query: 67 AEPDDPQDAVV--AKQYKENPEMFTLTARHWTNVYAGV 102
AEP+D A V +K ++++ E F A+ G+
Sbjct: 127 AEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSLGL 164
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 28 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMA 65
HP++ S G ICL IL + W+ A+++++V LS+ ++++
Sbjct: 100 HPHVYS-NGHICLSILTEDWSPALSVQSVCLSIISMLS 136
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 33.1 bits (74), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 16 NISSVKFL-TKIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQ 73
N + F+ I H N+ S TG ICL+ILK ++W L + ++ L+ D P
Sbjct: 80 NPPKISFMQNNILHSNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVSDSPL 139
Query: 74 DAVVA 78
D +
Sbjct: 140 DVDIG 144
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 16 NISSVKFL-TKIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQ 73
N + F+ I H N+ S TG ICL+ILK ++W L + ++ L+ D P
Sbjct: 80 NPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPL 139
Query: 74 DAVVA 78
D +
Sbjct: 140 DVDIG 144
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 16 NISSVKFL-TKIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQ 73
N + F+ I H N+ S TG ICL+ILK ++W L + ++ L+ D P
Sbjct: 80 NPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPL 139
Query: 74 DAVVA 78
D +
Sbjct: 140 DVDIG 144
>pdb|2I2X|B Chain B, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|D Chain D, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|F Chain F, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|H Chain H, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|J Chain J, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|L Chain L, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|N Chain N, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|P Chain P, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
Length = 258
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 70 DDPQDAVVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGP 129
D P + V+A KE P M T TA T +YA +KE +M L GG
Sbjct: 160 DVPAEEVLAAVQKEKPIMLTGTALMTTTMYA------FKEVNDML-LENGIKIPFACGGG 212
Query: 130 SKNPDFDSKIQRLTDMGVMSHDA 152
+ N DF S+ +GV +A
Sbjct: 213 AVNQDFVSQFA----LGVYGEEA 231
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 14/57 (24%)
Query: 22 FLTKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLRTVLLSLQALMA 65
F I HPNI G +C+ IL +++W+ ++ +LLS+ ++++
Sbjct: 73 FTPSILHPNIYP-NGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLS 128
>pdb|1QGU|B Chain B, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae,
Dithionite-Reduced State
pdb|1QGU|D Chain D, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae,
Dithionite-Reduced State
pdb|1QH8|B Chain B, Nitrogenase Mofe Protein From Klebsiella Pneumoniae, As-
Crystallized (Mixed Oxidation) State
pdb|1QH8|D Chain D, Nitrogenase Mofe Protein From Klebsiella Pneumoniae, As-
Crystallized (Mixed Oxidation) State
pdb|1QH1|B Chain B, Nitrogenase Mofe Protein From Klebsiella Pneumoniae,
Phenosafranin Oxidized State
pdb|1QH1|D Chain D, Nitrogenase Mofe Protein From Klebsiella Pneumoniae,
Phenosafranin Oxidized State
pdb|1H1L|B Chain B, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae, Nifv
Mutant
pdb|1H1L|D Chain D, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae, Nifv
Mutant
Length = 519
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 28/113 (24%)
Query: 24 TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKE 83
+ ++ P I +V+ +++ D LQA +A A+ D D+ +A +
Sbjct: 137 SALYKPEIIAVSTTCMAEVIGD-------------DLQAFIANAKKDGFVDSSIAVPHAH 183
Query: 84 NPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFD 136
P W N++ G A+ +T Y G P K P +
Sbjct: 184 TPSFIGSHVTGWDNMFEGF---------------AKTFTADYQGQPGKLPKLN 221
>pdb|2G3Q|A Chain A, Solution Structure Of Ede1 Uba-Ubiquitin Complex
Length = 43
Score = 26.9 bits (58), Expect = 5.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 139 IQRLTDMGVMSHDARVALSTYNWELERAT 167
++ L+ MG +A AL NW+LE AT
Sbjct: 8 VEELSGMGFTEEEAHNALEKCNWDLEAAT 36
>pdb|1AD3|A Chain A, Class 3 Aldehyde Dehydrogenase Complex With
Nicotinamide- Adenine-Dinucleotide
pdb|1AD3|B Chain B, Class 3 Aldehyde Dehydrogenase Complex With
Nicotinamide- Adenine-Dinucleotide
Length = 452
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 9/33 (27%), Positives = 22/33 (66%)
Query: 17 ISSVKFLTKIWHPNISSVTGAICLDILKDQWAA 49
I ++ L ++ + N+ S++GA+ D+ K++W +
Sbjct: 26 IQQLEALQRMINENLKSISGALASDLGKNEWTS 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.129 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,998,750
Number of Sequences: 62578
Number of extensions: 181641
Number of successful extensions: 769
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 493
Number of HSP's gapped (non-prelim): 222
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)