Query psy17486
Match_columns 172
No_of_seqs 195 out of 1638
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 23:42:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17486.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17486hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k9o_A Ubiquitin-conjugating e 100.0 7E-47 2.4E-51 298.4 13.9 144 2-172 57-200 (201)
2 3e46_A Ubiquitin-conjugating e 100.0 2E-45 6.7E-50 298.7 14.4 144 2-172 109-252 (253)
3 2pwq_A Ubiquitin conjugating e 100.0 6.6E-44 2.3E-48 283.9 7.2 143 2-172 72-214 (216)
4 1tte_A Ubiquitin-conjugating e 100.0 2.5E-40 8.4E-45 263.2 16.1 136 1-163 51-197 (215)
5 2bep_A Ubiquitin-conjugating e 100.0 5.1E-33 1.7E-37 211.8 9.5 98 2-100 60-157 (159)
6 1fxt_A Ubiquitin-conjugating e 100.0 1.7E-33 5.8E-38 212.3 6.3 98 2-100 51-148 (149)
7 4gpr_A Ubiquitin-conjugating e 100.0 7.4E-33 2.5E-37 209.2 9.6 97 2-100 53-149 (151)
8 1ayz_A UBC2, ubiquitin-conjuga 100.0 9.2E-33 3.1E-37 212.3 10.2 100 2-103 53-152 (169)
9 2ayv_A Ubiquitin-conjugating e 100.0 1.1E-32 3.6E-37 211.5 9.7 97 2-100 70-166 (166)
10 2c2v_B Ubiquitin-conjugating e 100.0 4.1E-33 1.4E-37 211.3 7.2 97 2-100 54-150 (154)
11 2r0j_A Ubiquitin carrier prote 100.0 9.8E-33 3.3E-37 208.2 9.0 98 2-101 50-147 (149)
12 2f4z_A Tgtwinscan_2721 - E2 do 100.0 1.2E-32 3.9E-37 215.8 9.5 99 2-101 94-192 (193)
13 1z2u_A Ubiquitin-conjugating e 100.0 1.7E-32 5.8E-37 207.0 9.6 97 2-100 53-149 (150)
14 1yh2_A HSPC150 protein similar 100.0 1.9E-32 6.6E-37 210.5 9.9 97 2-100 53-153 (169)
15 1zdn_A Ubiquitin-conjugating e 100.0 1.2E-32 4E-37 209.6 7.6 97 2-100 62-158 (158)
16 2c4o_A Ubiquitin-conjugating e 100.0 2.7E-32 9.1E-37 209.0 9.6 97 2-100 68-164 (165)
17 2aak_A UBC1, ubiquitin conjuga 100.0 3.3E-32 1.1E-36 205.9 9.9 98 2-101 53-150 (152)
18 1jat_A Ubiquitin-conjugating e 100.0 1.8E-32 6.2E-37 207.9 8.1 98 2-101 54-151 (155)
19 1wzv_A Ubiquitin-conjugating e 100.0 5.5E-32 1.9E-36 205.2 9.5 98 2-101 53-151 (155)
20 2e2c_A Ubiquitin conjugating e 100.0 6.5E-32 2.2E-36 205.1 9.9 97 2-101 58-154 (156)
21 3h8k_A Ubiquitin-conjugating e 100.0 8.1E-32 2.8E-36 206.0 9.9 98 2-101 53-163 (164)
22 3fn1_B NEDD8-conjugating enzym 100.0 1E-31 3.4E-36 206.1 9.4 97 2-100 63-166 (167)
23 2ucz_A UBC7, ubiquitin conjuga 100.0 7.9E-32 2.7E-36 206.3 8.6 98 2-101 54-164 (165)
24 3bzh_A Ubiquitin-conjugating e 100.0 1.2E-31 4.2E-36 210.1 9.7 97 2-100 97-193 (194)
25 3rcz_B SUMO-conjugating enzyme 100.0 1.5E-31 5.2E-36 204.4 9.5 97 2-100 64-162 (163)
26 2gjd_A Ubiquitin-conjugating e 100.0 1.2E-31 4.1E-36 203.8 8.8 97 2-100 58-156 (157)
27 2onu_A Ubiquitin-conjugating e 100.0 5.1E-32 1.7E-36 204.9 6.2 99 2-101 48-147 (152)
28 1c4z_D UBCH7, ubiquitin conjug 100.0 8.9E-32 3E-36 203.9 6.4 98 2-101 51-149 (154)
29 2grr_A Ubiquitin-conjugating e 100.0 2.6E-31 8.8E-36 202.7 9.0 98 2-101 61-160 (161)
30 1yf9_A Ubiquitin carrier prote 100.0 7.6E-32 2.6E-36 207.6 6.1 100 2-102 57-157 (171)
31 2z5d_A Ubiquitin-conjugating e 100.0 6.3E-32 2.2E-36 209.3 5.1 99 2-101 70-169 (179)
32 2y9m_A Ubiquitin-conjugating e 100.0 4.6E-31 1.6E-35 203.4 9.5 99 2-101 67-168 (172)
33 1i7k_A Ubiquitin-conjugating e 100.0 7.6E-31 2.6E-35 203.3 8.0 97 2-101 79-175 (179)
34 1y8x_A Ubiquitin-conjugating e 100.0 2.6E-30 8.9E-35 197.0 9.8 95 2-98 53-147 (160)
35 3o2u_A NEDD8-conjugating enzym 100.0 3.6E-30 1.2E-34 201.2 9.8 94 2-97 82-175 (190)
36 2nvu_C NEDD8-conjugating enzym 100.0 6.9E-30 2.4E-34 198.1 10.1 95 2-98 73-167 (180)
37 3rz3_A Ubiquitin-conjugating e 100.0 5.9E-30 2E-34 198.9 9.2 100 2-103 57-175 (183)
38 4ddg_A Ubiquitin-conjugating e 100.0 2.2E-29 7.5E-34 216.3 11.4 99 2-102 52-150 (399)
39 1yrv_A Ubiquitin-conjugating l 100.0 6.5E-30 2.2E-34 196.4 6.2 94 2-97 72-167 (169)
40 2awf_A Ubiquitin-conjugating e 100.0 1.3E-29 4.6E-34 195.2 6.2 92 2-95 67-172 (172)
41 4ds2_A Ubiquitin-conjugating e 99.9 5.9E-27 2E-31 179.6 6.3 90 2-93 71-163 (167)
42 3ceg_A Baculoviral IAP repeat- 99.9 1.2E-26 4.1E-31 193.5 8.6 122 2-125 129-280 (323)
43 2q0v_A Ubiquitin-conjugating e 99.9 2.2E-25 7.5E-30 169.1 0.6 80 2-84 74-156 (156)
44 2a4d_A Ubiquitin-conjugating e 99.9 1.8E-24 6.3E-29 164.6 3.0 76 2-78 78-156 (160)
45 1jat_B Ubiquitin-conjugating e 99.9 4E-25 1.4E-29 164.5 -2.1 78 2-81 59-138 (138)
46 2hlw_A Ubiquitin-conjugating e 99.9 4.5E-24 1.5E-28 164.0 3.5 77 1-78 87-166 (170)
47 2fo3_A Ubiquitin-conjugating e 99.9 8.6E-23 2.9E-27 149.5 5.9 67 2-70 55-122 (125)
48 2h2y_A Ubiquitin-conjugating e 99.9 3.1E-22 1.1E-26 148.6 6.3 66 2-69 69-135 (136)
49 1zuo_A Hypothetical protein LO 99.8 2.2E-22 7.7E-27 156.5 3.0 89 2-100 91-181 (186)
50 2a7l_A Hypothetical ubiquitin- 99.8 2.2E-21 7.6E-26 144.0 6.5 62 2-65 73-136 (136)
51 2f4w_A Ubiquitin-conjugating e 99.8 2.2E-19 7.7E-24 139.7 7.6 67 2-72 63-132 (187)
52 3r3q_A Suppressor protein STP2 99.5 4.1E-15 1.4E-19 113.0 5.5 67 2-71 83-161 (162)
53 2z6o_A UFM1-conjugating enzyme 99.5 3E-15 1E-19 113.4 1.9 72 2-83 85-161 (172)
54 2cwb_A Chimera of immunoglobul 99.5 9.8E-15 3.4E-19 103.6 3.9 81 66-172 20-104 (108)
55 3obq_A Tumor susceptibility ge 99.1 6.4E-11 2.2E-15 88.4 4.3 59 4-66 73-138 (146)
56 3kpa_A Probable ubiquitin fold 99.0 7.1E-11 2.4E-15 87.8 0.0 51 2-57 87-145 (168)
57 1ify_A HHR23A, UV excision rep 98.9 1E-09 3.6E-14 67.2 3.5 39 134-172 7-45 (49)
58 1z96_A DNA-damage, UBA-domain 98.9 4.2E-09 1.4E-13 61.4 5.2 39 133-171 2-40 (40)
59 2jy5_A Ubiquilin-1; UBA, alter 98.8 4.9E-09 1.7E-13 64.9 5.5 39 134-172 11-50 (52)
60 1vg5_A RSGI RUH-014, rhomboid 98.8 4.2E-09 1.4E-13 69.6 4.9 41 132-172 26-66 (73)
61 2bwb_A Ubiquitin-like protein 98.8 6.2E-09 2.1E-13 62.9 5.0 38 135-172 7-45 (46)
62 2g3q_A Protein YBL047C; endocy 98.8 5.2E-09 1.8E-13 62.2 4.3 37 136-172 5-41 (43)
63 2cpw_A CBL-interacting protein 98.8 1.6E-09 5.6E-14 69.9 2.0 51 117-172 6-57 (64)
64 2knz_A Ubiquilin-4; cytoplasm, 98.8 5.2E-09 1.8E-13 65.1 3.7 38 134-171 10-48 (53)
65 1veg_A NEDD8 ultimate buster-1 98.7 2.1E-08 7.3E-13 67.7 4.9 38 135-172 29-66 (83)
66 1wr1_B Ubiquitin-like protein 98.7 1.7E-08 5.9E-13 63.8 4.1 38 135-172 17-55 (58)
67 1vej_A Riken cDNA 4931431F19; 98.7 3.3E-08 1.1E-12 65.4 5.2 39 134-172 28-67 (74)
68 1dv0_A DNA repair protein HHR2 98.7 9.2E-09 3.1E-13 62.4 2.2 39 134-172 3-41 (47)
69 2dah_A Ubiquilin-3; UBA domain 98.6 4.7E-08 1.6E-12 60.9 5.0 38 134-171 8-46 (54)
70 1wji_A Tudor domain containing 98.6 3E-08 1E-12 63.8 4.0 36 136-171 10-45 (63)
71 1wiv_A UBP14, ubiquitin-specif 98.6 5.3E-08 1.8E-12 64.4 4.4 38 135-172 29-66 (73)
72 2dak_A Ubiquitin carboxyl-term 98.5 1.2E-07 4E-12 60.9 4.7 37 135-171 9-45 (63)
73 1wj7_A Hypothetical protein (R 98.5 1.4E-07 4.8E-12 66.0 4.6 41 132-172 36-77 (104)
74 2dkl_A Trinucleotide repeat co 98.4 2.5E-07 8.5E-12 62.8 5.1 37 136-172 22-58 (85)
75 2ekk_A UBA domain from E3 ubiq 98.4 2.4E-07 8.3E-12 55.9 4.4 37 135-172 9-45 (47)
76 2ooa_A E3 ubiquitin-protein li 98.4 5.7E-07 1.9E-11 54.9 5.1 37 135-171 11-47 (52)
77 2d9s_A CBL E3 ubiquitin protei 98.4 1.1E-06 3.7E-11 53.9 6.0 38 134-171 8-45 (53)
78 1wgn_A UBAP1, ubiquitin associ 98.3 3E-07 1E-11 58.1 3.5 39 134-172 18-56 (63)
79 2dai_A Ubadc1, ubiquitin assoc 98.3 8.9E-07 3E-11 59.8 5.0 37 135-171 29-65 (83)
80 2dag_A Ubiquitin carboxyl-term 98.3 1E-06 3.5E-11 58.2 4.7 36 136-171 10-46 (74)
81 1whc_A RSGI RUH-027, UBA/UBX 3 98.2 1E-06 3.5E-11 56.7 3.9 36 136-171 10-46 (64)
82 2cp8_A NEXT to BRCA1 gene 1 pr 98.2 2.7E-06 9.2E-11 52.7 4.8 37 135-171 9-46 (54)
83 1vek_A UBP14, ubiquitin-specif 98.2 2E-06 6.7E-11 58.2 4.5 38 135-172 29-67 (84)
84 2crn_A Ubash3A protein; compac 98.1 3.4E-06 1.2E-10 54.2 4.2 36 136-171 10-46 (64)
85 2juj_A E3 ubiquitin-protein li 98.0 5.5E-06 1.9E-10 50.9 4.4 38 134-171 6-43 (56)
86 2dna_A Unnamed protein product 98.0 4.8E-06 1.6E-10 53.9 4.3 38 135-172 19-57 (67)
87 2oo9_A E3 ubiquitin-protein li 98.0 1.2E-05 3.9E-10 47.7 4.8 38 134-171 3-40 (46)
88 2lbc_A Ubiquitin carboxyl-term 98.0 8E-06 2.7E-10 59.1 4.7 38 135-172 78-115 (126)
89 2qsf_X RAD23, UV excision repa 97.8 1.4E-05 4.9E-10 60.7 4.1 41 132-172 127-167 (171)
90 4ae4_A Ubiquitin-associated pr 97.8 1.9E-05 6.5E-10 56.6 4.4 38 135-172 76-113 (118)
91 1oqy_A HHR23A, UV excision rep 97.7 2.4E-05 8.1E-10 66.3 4.1 39 134-172 167-205 (368)
92 1oqy_A HHR23A, UV excision rep 97.7 2.6E-05 8.8E-10 66.1 3.8 40 133-172 323-362 (368)
93 4ae4_A Ubiquitin-associated pr 97.1 0.00039 1.3E-08 49.7 4.1 39 133-171 6-44 (118)
94 2cos_A Serine/threonine protei 96.9 0.0011 3.7E-08 40.6 4.1 39 133-171 7-46 (54)
95 3k9o_A Ubiquitin-conjugating e 96.9 0.0077 2.6E-07 46.5 9.9 125 2-158 70-200 (201)
96 3e46_A Ubiquitin-conjugating e 96.6 0.022 7.5E-07 45.7 10.7 124 2-157 122-251 (253)
97 3e21_A HFAF1, FAS-associated f 96.5 0.004 1.4E-07 36.9 4.2 38 134-171 4-43 (45)
98 1v92_A NSFL1 cofactor P47; 3-h 96.0 0.013 4.3E-07 34.4 4.7 36 136-171 6-42 (46)
99 2dal_A Protein KIAA0794; FAS a 95.5 0.026 9E-07 35.5 5.0 38 134-171 14-52 (62)
100 1q02_A Sequestosome 1; helical 95.3 0.015 5.1E-07 35.3 3.0 39 132-170 7-47 (52)
101 1wgl_A TOLL-interacting protei 95.1 0.058 2E-06 33.6 5.5 38 134-171 8-47 (59)
102 2dam_A ETEA protein; KIAA0887, 94.9 0.042 1.4E-06 35.1 4.6 38 134-171 17-56 (67)
103 1otr_A Protein CUE2; protein-p 94.7 0.076 2.6E-06 31.9 5.1 38 134-171 3-42 (49)
104 1tte_A Ubiquitin-conjugating e 94.6 0.062 2.1E-06 42.0 5.9 122 2-151 65-199 (215)
105 2pwq_A Ubiquitin conjugating e 94.5 0.025 8.5E-07 44.3 3.4 122 2-156 85-212 (216)
106 2dzl_A Protein FAM100B; UBA-li 94.2 0.094 3.2E-06 33.4 5.0 35 137-171 19-54 (66)
107 2dhy_A CUE domain-containing p 92.6 0.2 6.9E-06 32.0 4.6 39 133-171 16-56 (67)
108 2cp9_A EF-TS, EF-TSMT, elongat 92.3 0.23 7.8E-06 31.4 4.5 36 136-171 10-46 (64)
109 3ihp_A Ubiquitin carboxyl-term 89.0 0.31 1.1E-05 45.2 4.1 37 136-172 721-757 (854)
110 4dbg_B Ring finger protein 31; 85.3 0.91 3.1E-05 33.7 4.0 36 135-170 102-138 (162)
111 1tr8_A Conserved protein (MTH1 85.2 1.4 4.9E-05 30.2 4.8 35 136-170 66-101 (102)
112 2ebm_A RWD domain-containing p 84.8 0.45 1.5E-05 33.4 2.1 20 4-24 59-78 (128)
113 2day_A Ring finger protein 25; 84.7 0.49 1.7E-05 33.2 2.3 21 4-25 63-83 (128)
114 2l2d_A OTU domain-containing p 84.0 2.4 8.3E-05 26.6 5.0 34 134-167 16-50 (73)
115 2yz0_A Serine/threonine-protei 83.9 0.56 1.9E-05 33.3 2.4 20 4-24 66-85 (138)
116 2bep_A Ubiquitin-conjugating e 83.7 0.64 2.2E-05 34.2 2.6 25 104-128 135-159 (159)
117 1oai_A Nuclear RNA export fact 83.5 2.7 9.1E-05 25.9 5.0 36 135-170 7-43 (59)
118 4gpr_A Ubiquitin-conjugating e 82.4 0.78 2.7E-05 33.4 2.6 24 104-127 127-150 (151)
119 2jp7_A MRNA export factor MEX6 81.4 2.4 8.3E-05 25.9 4.2 36 135-170 6-42 (57)
120 1yh2_A HSPC150 protein similar 80.8 3.1 0.00011 30.8 5.5 36 105-141 132-167 (169)
121 1fxt_A Ubiquitin-conjugating e 80.6 1 3.4E-05 32.7 2.7 24 104-127 126-149 (149)
122 2daw_A RWD domain containing p 80.6 4.8 0.00016 29.2 6.4 21 3-24 78-98 (154)
123 2c2v_B Ubiquitin-conjugating e 80.6 0.78 2.7E-05 33.5 2.1 24 106-129 130-153 (154)
124 1p3q_Q VPS9P, vacuolar protein 80.1 1.3 4.5E-05 26.9 2.6 38 135-172 12-51 (54)
125 1ukx_A GCN2, GCN2 EIF2alpha ki 79.2 0.65 2.2E-05 32.9 1.2 20 4-24 67-86 (137)
126 2r0j_A Ubiquitin carrier prote 78.6 1.2 4.2E-05 32.2 2.6 25 104-128 124-148 (149)
127 2ebk_A RWD domain-containing p 77.4 0.79 2.7E-05 32.1 1.2 19 4-23 60-78 (128)
128 2cwb_A Chimera of immunoglobul 77.1 4.4 0.00015 28.0 5.0 83 66-159 23-105 (108)
129 2f4z_A Tgtwinscan_2721 - E2 do 75.6 1.5 5.3E-05 33.3 2.5 24 104-127 169-192 (193)
130 1jat_A Ubiquitin-conjugating e 75.6 1.2 4.1E-05 32.5 1.8 26 104-129 128-153 (155)
131 2dax_A Protein C21ORF6; RWD do 75.3 1.4 4.8E-05 31.9 2.1 20 4-24 77-96 (152)
132 1zdn_A Ubiquitin-conjugating e 73.1 1.9 6.4E-05 31.6 2.4 23 104-126 136-158 (158)
133 1wzv_A Ubiquitin-conjugating e 72.2 1.8 6.1E-05 31.5 2.0 26 104-129 128-153 (155)
134 1c4z_D UBCH7, ubiquitin conjug 71.6 1.5 5.2E-05 31.9 1.5 26 104-129 126-151 (154)
135 3fn1_B NEDD8-conjugating enzym 71.5 2.3 7.7E-05 31.4 2.5 23 105-127 145-167 (167)
136 2di0_A Activating signal coint 71.2 8.5 0.00029 24.6 4.8 39 133-171 11-51 (71)
137 1z2u_A Ubiquitin-conjugating e 70.8 2.4 8.3E-05 30.6 2.5 23 105-127 128-150 (150)
138 2c4o_A Ubiquitin-conjugating e 69.0 2.6 8.9E-05 31.1 2.3 23 105-127 143-165 (165)
139 2qho_B E3 ubiquitin-protein li 68.9 7.2 0.00025 23.1 3.7 27 146-172 22-48 (53)
140 3bzh_A Ubiquitin-conjugating e 68.3 2.8 9.7E-05 31.8 2.5 24 104-127 171-194 (194)
141 2grr_A Ubiquitin-conjugating e 67.9 2.8 9.6E-05 30.7 2.3 24 105-128 138-161 (161)
142 2gjd_A Ubiquitin-conjugating e 67.9 2.9 0.0001 30.5 2.4 23 105-127 135-157 (157)
143 1ayz_A UBC2, ubiquitin-conjuga 66.9 1.7 5.8E-05 32.3 0.9 29 104-132 127-155 (169)
144 2ayv_A Ubiquitin-conjugating e 65.6 3.4 0.00012 30.5 2.4 23 104-126 144-166 (166)
145 3rcz_B SUMO-conjugating enzyme 64.6 3.6 0.00012 30.3 2.3 24 104-127 140-163 (163)
146 2onu_A Ubiquitin-conjugating e 61.7 4 0.00014 29.6 2.1 25 105-129 125-149 (152)
147 2aak_A UBC1, ubiquitin conjuga 61.3 4.8 0.00016 29.1 2.5 24 105-128 128-151 (152)
148 2z5d_A Ubiquitin-conjugating e 61.3 4.7 0.00016 30.2 2.5 25 105-129 147-171 (179)
149 3zqs_A E3 ubiquitin-protein li 59.1 16 0.00056 27.6 5.1 46 4-65 42-87 (186)
150 1yf9_A Ubiquitin carrier prote 53.4 7.7 0.00026 28.7 2.5 24 105-128 134-157 (171)
151 3h8k_A Ubiquitin-conjugating e 50.1 9.7 0.00033 27.7 2.5 24 104-127 140-163 (164)
152 3k6g_A Telomeric repeat-bindin 49.8 29 0.001 23.7 4.6 33 140-172 19-51 (111)
153 4ddg_A Ubiquitin-conjugating e 48.2 11 0.00036 31.7 2.8 26 105-130 127-152 (399)
154 2gpi_A Conserved hypothetical 47.5 9.4 0.00032 25.5 1.9 24 148-171 51-74 (91)
155 3ihp_A Ubiquitin carboxyl-term 46.9 22 0.00074 32.9 4.9 36 136-171 653-689 (854)
156 1ixs_A Holliday junction DNA h 45.4 25 0.00084 21.5 3.5 25 135-159 17-41 (62)
157 2e2c_A Ubiquitin conjugating e 42.6 13 0.00043 26.9 2.1 23 105-128 133-155 (156)
158 4fp9_B Mterf domain-containing 40.1 28 0.00094 28.6 4.0 28 135-162 78-105 (335)
159 4gew_A 5'-tyrosyl-DNA phosphod 36.9 34 0.0011 27.8 4.1 37 135-171 45-82 (362)
160 2ucz_A UBC7, ubiquitin conjuga 36.4 22 0.00075 25.8 2.6 24 104-127 141-164 (165)
161 3fe3_A MAP/microtubule affinit 33.4 83 0.0028 24.7 5.9 37 135-171 289-325 (328)
162 2ejs_A Autocrine motility fact 31.2 90 0.0031 18.9 5.1 39 132-171 10-50 (58)
163 2ekf_A Ancient ubiquitous prot 28.5 1E+02 0.0036 18.8 6.0 39 132-171 10-50 (61)
164 2y9m_A Ubiquitin-conjugating e 26.9 36 0.0012 24.9 2.4 24 104-127 144-168 (172)
165 3rz3_A Ubiquitin-conjugating e 26.2 1.9E+02 0.0066 21.1 7.7 15 3-17 71-85 (183)
166 1jkg_B TAP; NTF2-like domain, 25.5 15 0.0005 28.8 0.0 35 136-170 199-234 (250)
167 1cuk_A RUVA protein; DNA repai 24.0 58 0.002 24.6 3.2 25 135-159 160-184 (203)
168 3e7l_A Transcriptional regulat 23.1 1.2E+02 0.0042 17.8 5.6 21 150-170 22-42 (63)
No 1
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=7e-47 Score=298.38 Aligned_cols=144 Identities=63% Similarity=0.993 Sum_probs=137.2
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY 81 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~ 81 (172)
+..+|.| |++||++||+|+|.|+||||||++.+|.|||++|.++|+|+++|++||.+|+++|.+|++++|+|.+|+++|
T Consensus 57 f~~~i~f-p~~YP~~pP~v~f~t~i~HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~ 135 (201)
T 3k9o_A 57 YQLEIKI-PETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQY 135 (201)
T ss_dssp EEEEEEC-CTTTTTSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred EEEEEEC-CCcCCCCCCccccccCcccCCCcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Confidence 4678888 999999999999999999999996699999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHHHHHHHHHHHhhhcCchhhHHHHHHHHHHhcCCCCCCCchHHHHHHHHHcCCChHHHHHHHHhcCC
Q psy17486 82 KENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNW 161 (172)
Q Consensus 82 ~~~~~~f~~~ar~~t~~~a~~~~~~~~~~~~~~~~~a~~w~~~~~~~~~~~~~~~~kv~~l~~~gf~~~~a~~aLs~~~W 161 (172)
++|++.| .++||+||++||+++...++++++|+.|++|||++++|+.||+.++|
T Consensus 136 ~~~~~~f--------------------------~~~a~~~~~~~a~~~~~~~~~eekV~~l~~MGf~~~~a~~AL~~~~w 189 (201)
T 3k9o_A 136 KQNPEMF--------------------------KQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVIVALSSKSW 189 (201)
T ss_dssp HHCHHHH--------------------------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHTTTCCHHHHHHHHHHTTT
T ss_pred HHCHHHH--------------------------HHHHHHHHHHhcccccccchhHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 9999999 78888888888888877778999999999999999999999999999
Q ss_pred ChHHHHHHhhC
Q psy17486 162 ELERATEAIFT 172 (172)
Q Consensus 162 ~~~~a~~~l~~ 172 (172)
|++.|+|+||+
T Consensus 190 d~~~A~e~L~~ 200 (201)
T 3k9o_A 190 DVETATELLLS 200 (201)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHhc
Confidence 99999999984
No 2
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=2e-45 Score=298.66 Aligned_cols=144 Identities=62% Similarity=0.981 Sum_probs=137.8
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY 81 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~ 81 (172)
+..+|.| |++||++||+|+|.|+||||||++.+|.|||++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|
T Consensus 109 f~l~i~f-p~~YP~~PP~V~F~T~i~HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~ 187 (253)
T 3e46_A 109 YQLEIKI-PETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQY 187 (253)
T ss_dssp EEEEEEC-CTTTTSSCCEEEESSCCCBTTBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred EEEEEEC-CCCCCCCCCeeeecCCCccCCccCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Confidence 4678889 999999999999999999999996699999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHHHHHHHHHHHhhhcCchhhHHHHHHHHHHhcCCCCCCCchHHHHHHHHHcCCChHHHHHHHHhcCC
Q psy17486 82 KENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNW 161 (172)
Q Consensus 82 ~~~~~~f~~~ar~~t~~~a~~~~~~~~~~~~~~~~~a~~w~~~~~~~~~~~~~~~~kv~~l~~~gf~~~~a~~aLs~~~W 161 (172)
++|++.| .++||+||++||+++...++++++|+.|++|||++++|+.||+.++|
T Consensus 188 ~~d~~~f--------------------------~~~ar~~t~~yA~~~~~~~~~~~~v~~l~~mgf~~~~~~~al~~~nW 241 (253)
T 3e46_A 188 KQNPEMF--------------------------KQTARLWAHVYAGAPVSSPEYTKKIENLCAAGFDRNAVIVALSSKSW 241 (253)
T ss_dssp HHCHHHH--------------------------HHHHHHHHHHHHCCSCCCHHHHHHHHHHHHTTCCHHHHHHHHHHTTT
T ss_pred HHCHHHH--------------------------HHHHHHHHHHhcccccCcchHHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 9999999 88888888889998888888999999999999999999999999999
Q ss_pred ChHHHHHHhhC
Q psy17486 162 ELERATEAIFT 172 (172)
Q Consensus 162 ~~~~a~~~l~~ 172 (172)
|++.|+|+||+
T Consensus 242 d~~~A~e~L~~ 252 (253)
T 3e46_A 242 DVETATELLLS 252 (253)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHhc
Confidence 99999999984
No 3
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=6.6e-44 Score=283.89 Aligned_cols=143 Identities=45% Similarity=0.780 Sum_probs=94.5
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY 81 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~ 81 (172)
+..+|.| |++||++||+|+|.|+||||||+..+|.|||++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|
T Consensus 72 f~l~i~f-P~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~ 150 (216)
T 2pwq_A 72 FTLAITI-PNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMY 150 (216)
T ss_dssp EEEEEEC-CTTTTSSCCEEEESSCCCBTTBCTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred EEEEEEC-CCcCCCCCCcccccCCCcCCCCcCCCCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 4578888 999999999999999999999996699999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHHHHHHHHHHHhhhcCchhhHHHHHHHHHHhcCCCCCCCchHHHHHHHHHcCCChHHHHHHHHhcCC
Q psy17486 82 KENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNW 161 (172)
Q Consensus 82 ~~~~~~f~~~ar~~t~~~a~~~~~~~~~~~~~~~~~a~~w~~~~~~~~~~~~~~~~kv~~l~~~gf~~~~a~~aLs~~~W 161 (172)
++|++.| .++||+||++||+.+... +++.+|+.+++|||+++.++.||+.++|
T Consensus 151 ~~d~~~f--------------------------~~~ar~~t~~ya~~~~~~-~~~~~v~~~~~mgf~~~~~~~al~~~~~ 203 (216)
T 2pwq_A 151 KENHALF--------------------------VKTASVWTKTFATGPKEE-PREVIIKKITEMGFSEDQAKNALIKANW 203 (216)
T ss_dssp HHCHHHH--------------------------HHHHHHHHHHHSCCC--------------------------------
T ss_pred HHCHHHH--------------------------HHHHHHHHHHhcCCCccc-chhhHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 9999999 777777777777776443 4689999999999999999999999999
Q ss_pred ChHHHHHHhhC
Q psy17486 162 ELERATEAIFT 172 (172)
Q Consensus 162 ~~~~a~~~l~~ 172 (172)
+++.|+|+|++
T Consensus 204 ~~~~~~~~l~~ 214 (216)
T 2pwq_A 204 NETLALNTLLE 214 (216)
T ss_dssp -----------
T ss_pred chHHHHHHHhc
Confidence 99999999984
No 4
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=2.5e-40 Score=263.15 Aligned_cols=136 Identities=37% Similarity=0.576 Sum_probs=119.7
Q ss_pred CCCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHH
Q psy17486 1 MVDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQ 80 (172)
Q Consensus 1 ~~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~ 80 (172)
++..+|.| |++||++||+|+|.|+||||||+..+|.|||++|.++|+|++||.+||.+|+++|.+|++++|+|.+++++
T Consensus 51 ~f~l~i~f-P~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~ 129 (215)
T 1tte_A 51 KFVVDIEV-PMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQH 129 (215)
T ss_dssp CCEEEEEC-CSCSSSCCCEEEETTTCCCSSSCSSSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHH
T ss_pred EEEEEEeC-CccCCCCCCcccccCCCccCcCcCCCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHH
Confidence 35678999 99999999999999999999999659999999999999999999999999999999999999999999999
Q ss_pred HhhCHHHHHHHHHHHHHHHHHHHHHhhhcCchhhHHHHHHHHHHhcCCCCCC-----------CchHHHHHHHHHcCCCh
Q psy17486 81 YKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKN-----------PDFDSKIQRLTDMGVMS 149 (172)
Q Consensus 81 ~~~~~~~f~~~ar~~t~~~a~~~~~~~~~~~~~~~~~a~~w~~~~~~~~~~~-----------~~~~~kv~~l~~~gf~~ 149 (172)
|++|++.|.++||+||++|| +.+... ...+.+|+.|++|||++
T Consensus 130 ~~~d~~~f~~~ar~~t~~yA--------------------------~~~~~~~~~~~~~~~~~g~~~~~v~~~~~mg~~~ 183 (215)
T 1tte_A 130 YLRDRESFNKTAALWTRLYA--------------------------SETSNGQKGNVEESDLYGIDHDLIDEFESQGFEK 183 (215)
T ss_dssp HHHCHHHHHHHHHHHHHHSS--------------------------CCCSCCSSCCCSCSSCCCCSHHHHHHHHHHTCCH
T ss_pred HHHCHHHHHHHHHHHHHHhc--------------------------cCCCcccccchhhhhhccccHHHHHHHHHcCCCH
Confidence 99999999555555555555 433211 01277999999999999
Q ss_pred HHHHHHHHhcCCCh
Q psy17486 150 HDARVALSTYNWEL 163 (172)
Q Consensus 150 ~~a~~aLs~~~W~~ 163 (172)
+.|+.||+..+||.
T Consensus 184 ~~~~~al~~~~~~~ 197 (215)
T 1tte_A 184 DKIVEVLRRLGVKS 197 (215)
T ss_dssp HHHHHHHHHSCCSS
T ss_pred HHHHHHHHHcCCCc
Confidence 99999999999997
No 5
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=99.98 E-value=5.1e-33 Score=211.76 Aligned_cols=98 Identities=74% Similarity=1.129 Sum_probs=91.4
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY 81 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~ 81 (172)
+..+|.| |++||++||+|+|.|+||||||++.+|.|||++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|
T Consensus 60 f~~~i~f-p~~YP~~PP~v~f~t~i~HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~ 138 (159)
T 2bep_A 60 YQLEIKI-PETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQY 138 (159)
T ss_dssp EEEEEEC-CTTTTSSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred EEEEEeC-CCcCCCCCCEEEeeCCCCccCCCCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 4578888 999999999999999999999996699999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHHHHHH
Q psy17486 82 KENPEMFTLTARHWTNVYA 100 (172)
Q Consensus 82 ~~~~~~f~~~ar~~t~~~a 100 (172)
++|++.|.++||+||++||
T Consensus 139 ~~~~~~f~~~a~~~~~~~a 157 (159)
T 2bep_A 139 KQNPEMFKQTARLWAHVYA 157 (159)
T ss_dssp HHCHHHHHHHHHHHHHHHS
T ss_pred HHCHHHHHHHHHHHHHHhh
Confidence 9999999777777776665
No 6
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=99.98 E-value=1.7e-33 Score=212.28 Aligned_cols=98 Identities=48% Similarity=0.803 Sum_probs=92.0
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY 81 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~ 81 (172)
+..+|.| |++||++||+|+|.|+||||||+..+|.|||++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|
T Consensus 51 f~~~i~f-p~~YP~~PP~v~f~t~i~HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~ 129 (149)
T 1fxt_A 51 FVVDIEV-PMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHY 129 (149)
T ss_dssp EEEEEEC-CTTTTSSCCEEEESSCCCBTTBCSSSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHH
T ss_pred EEEEEEC-CCCCCCCCCEEEEeCCCccCCCcCCCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 4578888 999999999999999999999996699999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHHHHHH
Q psy17486 82 KENPEMFTLTARHWTNVYA 100 (172)
Q Consensus 82 ~~~~~~f~~~ar~~t~~~a 100 (172)
++|++.|.++||+||++||
T Consensus 130 ~~d~~~f~~~a~~~~~~~a 148 (149)
T 1fxt_A 130 LRDRESFNKTAALWTRLYA 148 (149)
T ss_dssp HHCSSHHHHHHHHHHHHHC
T ss_pred HHCHHHHHHHHHHHHHHhc
Confidence 9999999777777777776
No 7
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=99.98 E-value=7.4e-33 Score=209.23 Aligned_cols=97 Identities=45% Similarity=0.775 Sum_probs=91.1
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY 81 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~ 81 (172)
+..+|.| |++||++||+|+|.|+||||||+. +|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+|+++|
T Consensus 53 f~~~i~f-p~~YP~~pP~v~f~t~i~HPnv~~-~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~ 130 (151)
T 4gpr_A 53 FFLDVHF-PVDYPFKAPRVTFMTKVYHPNINK-NGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVL 130 (151)
T ss_dssp EEEEEEC-CTTTTSSCCEEEESSCCCBTTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHH
T ss_pred EEEEEEC-CCCCCCCcceeEEecCcccceECC-CCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Confidence 4678889 999999999999999999999995 99999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHHHHHH
Q psy17486 82 KENPEMFTLTARHWTNVYA 100 (172)
Q Consensus 82 ~~~~~~f~~~ar~~t~~~a 100 (172)
++|+++|.++||+||++||
T Consensus 131 ~~d~~~f~~~ar~~~~~ya 149 (151)
T 4gpr_A 131 RANKKQFEDTAREWTRMYA 149 (151)
T ss_dssp HHCHHHHHHHHHHHHHHHC
T ss_pred HHCHHHHHHHHHHHHHHhc
Confidence 9999999777777777766
No 8
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=99.98 E-value=9.2e-33 Score=212.34 Aligned_cols=100 Identities=24% Similarity=0.510 Sum_probs=95.0
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY 81 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~ 81 (172)
+..+|.| |++||++||+|+|.|+||||||+. +|.|||++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|
T Consensus 53 f~l~i~f-p~~YP~~PP~v~F~t~i~HPNI~~-~G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~ 130 (169)
T 1ayz_A 53 FRLLLEF-DEEYPNKPPHVKFLSEMFHPNVYA-NGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLF 130 (169)
T ss_dssp EEEEEEC-CTTTTTSCCEEEESSCCCCTTBCT-TSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHH
T ss_pred EEEEEEC-cccCCCCCCccccccCCccCCCCC-CCeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Confidence 4678888 999999999999999999999996 99999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHHHHHHHHH
Q psy17486 82 KENPEMFTLTARHWTNVYAGVV 103 (172)
Q Consensus 82 ~~~~~~f~~~ar~~t~~~a~~~ 103 (172)
++|++.|.++||+||++||...
T Consensus 131 ~~d~~~y~~~~r~~~~~~a~~~ 152 (169)
T 1ayz_A 131 KDHKSQYVKRVKETVEKSWEDD 152 (169)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999998643
No 9
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=99.98 E-value=1.1e-32 Score=211.46 Aligned_cols=97 Identities=44% Similarity=0.763 Sum_probs=91.8
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY 81 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~ 81 (172)
+..+|.| |++||++||+|+|.|+||||||+. +|.|||++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|
T Consensus 70 f~l~i~f-p~~YP~~PP~V~F~T~i~HPNI~~-~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~ 147 (166)
T 2ayv_A 70 FFLNIHF-PSDYPFKPPKVNFTTKIYHPNINS-QGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLY 147 (166)
T ss_dssp EEEEEEC-CTTTTSSCCEEEECSCCCBTTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred EEEEEeC-CCcCCCCCceeeeccCCcCCcCCC-CCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHH
Confidence 4578888 999999999999999999999995 99999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHHHHHH
Q psy17486 82 KENPEMFTLTARHWTNVYA 100 (172)
Q Consensus 82 ~~~~~~f~~~ar~~t~~~a 100 (172)
++|++.|.++||+||++||
T Consensus 148 ~~d~~~f~~~ar~~~~~~A 166 (166)
T 2ayv_A 148 KSDRMRYDQTAREWSQKYA 166 (166)
T ss_dssp HHCHHHHHHHHHHHHHHHC
T ss_pred HHCHHHHHHHHHHHHHHhC
Confidence 9999999888888888775
No 10
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=99.98 E-value=4.1e-33 Score=211.31 Aligned_cols=97 Identities=46% Similarity=0.790 Sum_probs=87.8
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY 81 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~ 81 (172)
+..+|.| |++||++||+|+|.|+||||||+. +|.|||++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|
T Consensus 54 f~~~i~f-p~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~ 131 (154)
T 2c2v_B 54 FKLELFL-PEEYPMAAPKVRFMTKIYHPNVDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQW 131 (154)
T ss_dssp EEEEEEC-CTTTTSSCCEEEECSCCCCTTBCT-TCBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHH
T ss_pred EEEEEEc-CCCCCCCCCEEEeecCcccCcCcc-CCeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 4578888 999999999999999999999995 89999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHHHHHH
Q psy17486 82 KENPEMFTLTARHWTNVYA 100 (172)
Q Consensus 82 ~~~~~~f~~~ar~~t~~~a 100 (172)
++|+++|.++||+||++||
T Consensus 132 ~~d~~~f~~~ar~~~~~~a 150 (154)
T 2c2v_B 132 KTNEAQAIETARAWTRLYA 150 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHCHHHHHHHHHHHHHHhc
Confidence 9999999666666666665
No 11
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=99.98 E-value=9.8e-33 Score=208.16 Aligned_cols=98 Identities=45% Similarity=0.815 Sum_probs=90.9
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY 81 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~ 81 (172)
+..+|.| |++||++||+|+|.|+||||||+. +|.|||++|.++|+|+++|++||.+|+++|.+|++++|+|.+|+++|
T Consensus 50 f~~~i~f-p~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~ 127 (149)
T 2r0j_A 50 YKLELFL-PEQYPMEPPKVRFLTKIYHPNIDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHF 127 (149)
T ss_dssp EEEEEEC-CTTTTTSCCEEEECSCCCBTTBCT-TCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHH
T ss_pred EEEEEeC-CcccCCCCCeeEeccCCccCCCCC-CCEEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHH
Confidence 4578888 999999999999999999999995 89999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHHHHHHH
Q psy17486 82 KENPEMFTLTARHWTNVYAG 101 (172)
Q Consensus 82 ~~~~~~f~~~ar~~t~~~a~ 101 (172)
++|+++|.++||+||++||.
T Consensus 128 ~~~~~~f~~~~~~~~~~~a~ 147 (149)
T 2r0j_A 128 KQDKNDAEHVARQWNKIYAN 147 (149)
T ss_dssp HHCHHHHHHHHHHHHHHHSC
T ss_pred HHCHHHHHHHHHHHHHHHcc
Confidence 99999997777777766663
No 12
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=99.98 E-value=1.2e-32 Score=215.78 Aligned_cols=99 Identities=52% Similarity=0.822 Sum_probs=92.5
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY 81 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~ 81 (172)
+..+|.| |++||++||+|+|+|+||||||+..+|.|||++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|
T Consensus 94 f~l~i~f-p~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~ 172 (193)
T 2f4z_A 94 FTLDIVI-PPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMM 172 (193)
T ss_dssp EEEEEEC-CTTTTTSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred EEEEEEC-CCcCCCCCCeEEEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 4578888 999999999999999999999996699999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHHHHHHH
Q psy17486 82 KENPEMFTLTARHWTNVYAG 101 (172)
Q Consensus 82 ~~~~~~f~~~ar~~t~~~a~ 101 (172)
++|++.|.++||+||++||+
T Consensus 173 ~~d~~~f~~~ar~~t~~ya~ 192 (193)
T 2f4z_A 173 IENHPLFVQTAKLWTETFAK 192 (193)
T ss_dssp HHCHHHHHHHHHHHHHHHCC
T ss_pred HHCHHHHHHHHHHHHHHHcc
Confidence 99999997777777777763
No 13
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=99.97 E-value=1.7e-32 Score=206.99 Aligned_cols=97 Identities=42% Similarity=0.752 Sum_probs=91.6
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY 81 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~ 81 (172)
+..+|.| |++||++||+|+|.|+||||||+. +|.|||++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|
T Consensus 53 f~~~i~f-p~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~ 130 (150)
T 1z2u_A 53 FFLTIHF-PTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 130 (150)
T ss_dssp EEEEEEC-CTTTTSSCCEEEESSCCCBTTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred EEEEEEC-CCCCCCCCcEEEEecCcccCcCCC-CCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHH
Confidence 4568888 999999999999999999999995 99999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHHHHHH
Q psy17486 82 KENPEMFTLTARHWTNVYA 100 (172)
Q Consensus 82 ~~~~~~f~~~ar~~t~~~a 100 (172)
++|++.|.++||+||++||
T Consensus 131 ~~~~~~f~~~~~~~~~~~a 149 (150)
T 1z2u_A 131 KTDRERYNQLAREWTQKYA 149 (150)
T ss_dssp HHCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999888888877776
No 14
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=99.97 E-value=1.9e-32 Score=210.53 Aligned_cols=97 Identities=38% Similarity=0.670 Sum_probs=88.2
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCC----CCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILK----DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~----~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~a 77 (172)
+..+|.| |++||++||+|+|.|+||||||+ .+|.||||+|. ++|+|+++|.+||.+|+++|.+|++++|+|.+|
T Consensus 53 f~~~i~f-p~~YP~~PP~v~f~t~i~HPNv~-~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~a 130 (169)
T 1yh2_A 53 FKLEVII-PERYPFEPPQIRFLTPIYHPNID-SAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADI 130 (169)
T ss_dssp EEEEEEC-CTTTTSSCCEEEESSCCCBTTBC-TTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHH
T ss_pred EEEEEEe-CCCCCCCCcEEEeecCCccccCC-cCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHH
Confidence 4678888 99999999999999999999999 59999999998 899999999999999999999999999999999
Q ss_pred HHHHhhCHHHHHHHHHHHHHHHH
Q psy17486 78 AKQYKENPEMFTLTARHWTNVYA 100 (172)
Q Consensus 78 a~~~~~~~~~f~~~ar~~t~~~a 100 (172)
+++|++|+++|.++||+||++||
T Consensus 131 a~~~~~~~~~y~~~~r~~~~~~a 153 (169)
T 1yh2_A 131 SSEFKYNKPAFLKNARQWTEKHA 153 (169)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHhhHHHHHHHHHHHHHHHc
Confidence 99999999999555555555544
No 15
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=99.97 E-value=1.2e-32 Score=209.63 Aligned_cols=97 Identities=29% Similarity=0.545 Sum_probs=91.6
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY 81 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~ 81 (172)
+..+|.| |++||++||+|+|.|+||||||+. +|.|||++|.++|+|.++|.+||.+|+++|.+|++++|+|.+|+++|
T Consensus 62 f~~~i~f-p~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~ 139 (158)
T 1zdn_A 62 FRMKLLL-GKDFPASPPKGYFLTKIFHPNVGA-NGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLL 139 (158)
T ss_dssp EEEEEEC-CTTTTTSCCEEEESSCCCCTTBCT-TSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHH
T ss_pred EEEEEEc-CCCCCCCCCEEEeccCcccCCCCC-CCEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 4568888 999999999999999999999995 89999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHHHHHH
Q psy17486 82 KENPEMFTLTARHWTNVYA 100 (172)
Q Consensus 82 ~~~~~~f~~~ar~~t~~~a 100 (172)
++|++.|.++||+||++||
T Consensus 140 ~~d~~~f~~~a~~~t~~~A 158 (158)
T 1zdn_A 140 LENYEEYAARARLLTEIHG 158 (158)
T ss_dssp HHCHHHHHHHHHHHHHHHC
T ss_pred HHCHHHHHHHHHHHHHHhC
Confidence 9999999888888887775
No 16
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=99.97 E-value=2.7e-32 Score=209.03 Aligned_cols=97 Identities=42% Similarity=0.754 Sum_probs=91.5
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY 81 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~ 81 (172)
+..+|.| |++||++||+|+|.|+||||||+. +|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+|+++|
T Consensus 68 f~l~i~f-p~~YP~~PP~v~F~T~i~HPnV~~-~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~ 145 (165)
T 2c4o_A 68 FFLTIHF-PTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 145 (165)
T ss_dssp EEEEEEC-CTTTTSSCCEEEECSCCCBTTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred EEEEEEC-CCcCCCCCCEEEEecCCcCCcCCC-CCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHH
Confidence 4568888 999999999999999999999995 99999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHHHHHH
Q psy17486 82 KENPEMFTLTARHWTNVYA 100 (172)
Q Consensus 82 ~~~~~~f~~~ar~~t~~~a 100 (172)
++|+++|.++||+||++||
T Consensus 146 ~~d~~~y~~~ar~~~~~~a 164 (165)
T 2c4o_A 146 KTDREKYNRIAREWTQKYA 164 (165)
T ss_dssp HHCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999777777777776
No 17
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=99.97 E-value=3.3e-32 Score=205.86 Aligned_cols=98 Identities=27% Similarity=0.598 Sum_probs=92.1
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY 81 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~ 81 (172)
+..+|.| |++||++||+|+|.|+||||||+. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|
T Consensus 53 f~~~i~f-p~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~ 130 (152)
T 2aak_A 53 FKLSLQF-SEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMY 130 (152)
T ss_dssp EEEEEEC-CTTTTTSCCEEEESSCCCCTTBCT-TSBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHH
T ss_pred EEEEEEC-CCCCCCCCCEEEEecCcccCCCCC-CCEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHH
Confidence 4578888 999999999999999999999996 99999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHHHHHHH
Q psy17486 82 KENPEMFTLTARHWTNVYAG 101 (172)
Q Consensus 82 ~~~~~~f~~~ar~~t~~~a~ 101 (172)
++|+++|.++||+||++||.
T Consensus 131 ~~~~~~y~~~~~~~~~~~a~ 150 (152)
T 2aak_A 131 SESKREYNRRVRDVVEQSWT 150 (152)
T ss_dssp HHCHHHHHHHHHHHHHHHCC
T ss_pred HHCHHHHHHHHHHHHHHHcc
Confidence 99999998878777777763
No 18
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=99.97 E-value=1.8e-32 Score=207.93 Aligned_cols=98 Identities=42% Similarity=0.741 Sum_probs=91.0
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY 81 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~ 81 (172)
+..+|.| |++||++||+|+|.|+||||||+ .+|.|||++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|
T Consensus 54 f~~~i~f-p~~YP~~PP~v~f~t~i~HPnv~-~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~ 131 (155)
T 1jat_A 54 FELELYL-PDDYPMEAPKVRFLTKIYHPNID-RLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDW 131 (155)
T ss_dssp EEEEEEC-CTTTTTSCCEEEECSCCCBTTBC-TTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHH
T ss_pred EEEEEEc-CCCCCCCCCcceeecccccCCCC-CCCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 4678888 99999999999999999999999 699999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHHHHHHH
Q psy17486 82 KENPEMFTLTARHWTNVYAG 101 (172)
Q Consensus 82 ~~~~~~f~~~ar~~t~~~a~ 101 (172)
++|++.|.++||+||++||.
T Consensus 132 ~~~~~~f~~~~r~~~~~~a~ 151 (155)
T 1jat_A 132 IKNEQGAKAKAREWTKLYAK 151 (155)
T ss_dssp HHCHHHHHHHHHHHHHHHSE
T ss_pred HHCHHHHHHHHHHHHHHhcc
Confidence 99999997766666666663
No 19
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=99.97 E-value=5.5e-32 Score=205.21 Aligned_cols=98 Identities=28% Similarity=0.513 Sum_probs=91.3
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccC-CCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDIL-KDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQ 80 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l-~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~ 80 (172)
+..+|.| |++||++||+|+|.|+||||||+. +|.||+++| .++|+|+++|.+||.+|+++|.+|++++|+|.+|+++
T Consensus 53 f~~~i~f-p~~YP~~PP~v~f~t~i~HPnV~~-~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~ 130 (155)
T 1wzv_A 53 FNLRISF-PPEYPFKPPMIKFTTKIYHPNVDE-NGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADL 130 (155)
T ss_dssp EEEEEEC-CTTTTSSCCEEEESSCCCBTTBCT-TCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHH
T ss_pred EEEEEEC-CCCCCCCCCcceeeCCCccCcCCC-CCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 4678888 999999999999999999999996 999999999 8999999999999999999999999999999999999
Q ss_pred HhhCHHHHHHHHHHHHHHHHH
Q psy17486 81 YKENPEMFTLTARHWTNVYAG 101 (172)
Q Consensus 81 ~~~~~~~f~~~ar~~t~~~a~ 101 (172)
|++|++.|.++||+||++||.
T Consensus 131 ~~~~~~~y~~~~r~~~~~~a~ 151 (155)
T 1wzv_A 131 LTQNPELFRKNAEEFTLRFGV 151 (155)
T ss_dssp HHHCHHHHHHHHHHHHHHHCE
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 999999997777777777664
No 20
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=99.97 E-value=6.5e-32 Score=205.07 Aligned_cols=97 Identities=33% Similarity=0.581 Sum_probs=92.1
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY 81 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~ 81 (172)
+..+|.| |++||++||+|+|.|+||||||+. +|.|||++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|
T Consensus 58 f~~~i~f-p~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~ 135 (156)
T 2e2c_A 58 YKLTLEF-PSDYPYKPPVVKFTTPCWHPNVDQ-SGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW 135 (156)
T ss_dssp EEEEEEC-CTTTTSSCCEEEESSCCCBTTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT
T ss_pred EEEEEEC-CCCCCCCCCEEEEeCCcccCCCcc-CceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh
Confidence 4568888 999999999999999999999996 99999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHHHHHHH
Q psy17486 82 KENPEMFTLTARHWTNVYAG 101 (172)
Q Consensus 82 ~~~~~~f~~~ar~~t~~~a~ 101 (172)
+|+++|.++||+||++|++
T Consensus 136 -~d~~~y~~~~~~~~~~~~~ 154 (156)
T 2e2c_A 136 -SNQTEYKKVLHEKYKTAQS 154 (156)
T ss_dssp -TCHHHHHHHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHHHHHhcc
Confidence 8999998888888888874
No 21
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=99.97 E-value=8.1e-32 Score=205.98 Aligned_cols=98 Identities=20% Similarity=0.491 Sum_probs=92.4
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCC-------------CCcCCcCCHHHHHHHHHHhhcCCC
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALMAAAE 68 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~-------------~~W~p~~~l~~vL~~i~~ll~~p~ 68 (172)
+..+|.| |++||++||+|+|.|+||||||+. +|.||+++|. ++|+|++||++||.+|+++|.+|+
T Consensus 53 f~~~i~f-p~~YP~~PP~v~f~t~i~HPNV~~-~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn 130 (164)
T 3h8k_A 53 FPAILSF-PLDYPLSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPN 130 (164)
T ss_dssp EEEEEEC-CTTTTSSCCEEEECSCCCCTTBCT-TSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCC
T ss_pred EEEEEEC-CCCCCCCCCEEEEcCCCccCCCCC-CCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCC
Confidence 4578889 999999999999999999999994 9999999996 789999999999999999999999
Q ss_pred CCChHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q psy17486 69 PDDPQDAVVAKQYKENPEMFTLTARHWTNVYAG 101 (172)
Q Consensus 69 ~~~p~n~~aa~~~~~~~~~f~~~ar~~t~~~a~ 101 (172)
+++|+|.+|+++|++|+++|.++||+||+++++
T Consensus 131 ~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~s~~ 163 (164)
T 3h8k_A 131 DESGANVDASKMWRDDREQFYKIAKQIVQKSLG 163 (164)
T ss_dssp CSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHT
T ss_pred CCCccCHHHHHHHHHCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999998888888888763
No 22
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=99.97 E-value=1e-31 Score=206.06 Aligned_cols=97 Identities=33% Similarity=0.570 Sum_probs=91.1
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCC------CcCCcCCHHHHHHHHHHhhcC-CCCCChHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKD------QWAAAMTLRTVLLSLQALMAA-AEPDDPQD 74 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~------~W~p~~~l~~vL~~i~~ll~~-p~~~~p~n 74 (172)
+..+|.| |++||++||+|+|.|+||||||+ .+|.|||++|.. +|+|+++|++||.+|+++|.+ |++++|+|
T Consensus 63 f~~~i~f-p~~YP~~pP~v~f~t~i~HPnv~-~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n 140 (167)
T 3fn1_B 63 FQFETEV-PDAYNMVPPKVKCLTKIWHPNIT-ETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLN 140 (167)
T ss_dssp EEEEEEC-CTTBTTBCCEEEECSCCCCSSBC-TTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSC
T ss_pred EEEEEEC-CCCCCCCCCeeEecCCcccCCCC-CCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchh
Confidence 5678899 99999999999999999999999 599999999975 799999999999999999999 79999999
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHH
Q psy17486 75 AVVAKQYKENPEMFTLTARHWTNVYA 100 (172)
Q Consensus 75 ~~aa~~~~~~~~~f~~~ar~~t~~~a 100 (172)
.+|+++|++|+++|.++||+||++||
T Consensus 141 ~eaa~~~~~~~~~f~~~~r~~~~~~A 166 (167)
T 3fn1_B 141 IEAAEHHLRDKEDFRNKVDDYIKRYA 166 (167)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence 99999999999999888888888876
No 23
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=99.97 E-value=7.9e-32 Score=206.28 Aligned_cols=98 Identities=19% Similarity=0.435 Sum_probs=92.4
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccC-------------CCCcCCcCCHHHHHHHHHHhhcCCC
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLRTVLLSLQALMAAAE 68 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l-------------~~~W~p~~~l~~vL~~i~~ll~~p~ 68 (172)
+..+|.| |++||++||+|+|.|+||||||+. +|.|||++| .++|+|+++|++||.+|+++|.+|+
T Consensus 54 f~~~i~f-p~~YP~~PP~v~f~t~i~HPNv~~-~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn 131 (165)
T 2ucz_A 54 FNAKLEF-PKDYPLSPPKLTFTPSILHPNIYP-NGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPN 131 (165)
T ss_dssp EEEEEEC-CTTTTTSCCEEEESSCCSCTTBCT-TSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCC
T ss_pred EEEEEEC-CccCCCCCCEEEEeCCCccCCCCC-CCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCC
Confidence 4678888 999999999999999999999995 899999999 6889999999999999999999999
Q ss_pred CCChHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q psy17486 69 PDDPQDAVVAKQYKENPEMFTLTARHWTNVYAG 101 (172)
Q Consensus 69 ~~~p~n~~aa~~~~~~~~~f~~~ar~~t~~~a~ 101 (172)
+++|+|.+||++|++|+++|.++||+||++|++
T Consensus 132 ~~~p~n~~aa~~~~~~~~~y~~~v~~~~~~~~~ 164 (165)
T 2ucz_A 132 IESGANIDACILWRDNRPEFERQVKLSILKSLG 164 (165)
T ss_dssp GGGCCCHHHHHHHHTTHHHHHHHHHHHHHHHTT
T ss_pred CCCchhHHHHHHHHHCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998888888888763
No 24
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=99.97 E-value=1.2e-31 Score=210.11 Aligned_cols=97 Identities=41% Similarity=0.671 Sum_probs=91.3
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY 81 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~ 81 (172)
+..+|.| |++||++||+|+|.|+||||||+. +|.|||++|.++|+|.++|.+||.+|+++|.+|++++|+|.+|+.+|
T Consensus 97 f~l~i~f-p~~YP~~PP~V~F~T~i~HPNV~~-~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~ 174 (194)
T 3bzh_A 97 FFLDITF-TPEYPFKPPKVTFRTRIYHCNINS-QGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQY 174 (194)
T ss_dssp EEEEEEC-CTTTTTSCCEEEESSCCCBTTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred EEEEEEC-CCcCCCCCccccccCCCccceECC-CCceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHH
Confidence 5678888 999999999999999999999995 89999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHHHHHH
Q psy17486 82 KENPEMFTLTARHWTNVYA 100 (172)
Q Consensus 82 ~~~~~~f~~~ar~~t~~~a 100 (172)
++|+++|.++||+||++||
T Consensus 175 ~~d~~~f~~~ar~~t~~ya 193 (194)
T 3bzh_A 175 MTNRAEHDRMARQWTKRYA 193 (194)
T ss_dssp HHCHHHHHHHHHHHHHHHC
T ss_pred HHCHHHHHHHHHHHHHHhh
Confidence 9999999777777777775
No 25
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=99.97 E-value=1.5e-31 Score=204.44 Aligned_cols=97 Identities=23% Similarity=0.489 Sum_probs=90.9
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCC--CcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~--~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~ 79 (172)
+..+|.| |++||++||+|+|.|+||||||+ .+|.||+++|.. +|+|+++|++||.+|+++|.+|++++|+|.+|++
T Consensus 64 f~l~i~f-p~~YP~~pP~v~F~t~i~HPnV~-~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~ 141 (163)
T 3rcz_B 64 YKLTMAF-PEEYPTRPPKCRFTPPLFHPNVY-PSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYT 141 (163)
T ss_dssp EEEEEEC-CTTTTTSCCEEEESSCCCSTTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHH
T ss_pred EEEEEEC-CCCCCCCCCEEEEeCCCccCCCC-CCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHH
Confidence 4578888 99999999999999999999999 599999999975 4999999999999999999999999999999999
Q ss_pred HHhhCHHHHHHHHHHHHHHHH
Q psy17486 80 QYKENPEMFTLTARHWTNVYA 100 (172)
Q Consensus 80 ~~~~~~~~f~~~ar~~t~~~a 100 (172)
+|++|+++|.++||+||++||
T Consensus 142 ~~~~d~~~y~~~~r~~~~~ya 162 (163)
T 3rcz_B 142 MFKKDKVEYEKRVRAQARENA 162 (163)
T ss_dssp HHHHCHHHHHHHHHHHHHHTC
T ss_pred HHHHCHHHHHHHHHHHHHHhC
Confidence 999999999888888888876
No 26
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=99.97 E-value=1.2e-31 Score=203.83 Aligned_cols=97 Identities=26% Similarity=0.559 Sum_probs=90.9
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCC--CcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~--~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~ 79 (172)
++.+|.| |++||++||+|+|.|+||||||+ .+|.||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+|++
T Consensus 58 f~~~i~f-p~~YP~~PP~v~f~t~i~HPnv~-~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~ 135 (157)
T 2gjd_A 58 YPITVEY-PNEYPSKPPKVKFPAGFYHPNVY-PSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWR 135 (157)
T ss_dssp EEEEEEC-CTTTTTSCCEEECCTTCCCTTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHH
T ss_pred EEEEEEc-CCCCCCCCCeeeccCCCccCCCC-CCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHH
Confidence 4578888 99999999999999999999999 499999999977 7999999999999999999999999999999999
Q ss_pred HHhhCHHHHHHHHHHHHHHHH
Q psy17486 80 QYKENPEMFTLTARHWTNVYA 100 (172)
Q Consensus 80 ~~~~~~~~f~~~ar~~t~~~a 100 (172)
+|++|+++|.++||+||++||
T Consensus 136 ~~~~~~~~y~~~~~~~~~~~a 156 (157)
T 2gjd_A 136 SFSRNKAEYDKKVLLQAKQYS 156 (157)
T ss_dssp HHHHCHHHHHHHHHHHHHHTB
T ss_pred HHHHCHHHHHHHHHHHHHHhc
Confidence 999999999777777777776
No 27
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=99.97 E-value=5.1e-32 Score=204.92 Aligned_cols=99 Identities=22% Similarity=0.525 Sum_probs=92.3
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHH-HHHhhcCCCCCChHHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLS-LQALMAAAEPDDPQDAVVAKQ 80 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~-i~~ll~~p~~~~p~n~~aa~~ 80 (172)
+..+|.| |++||++||+|+|.|+||||||+..+|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+|+++
T Consensus 48 f~~~i~f-p~~YP~~pP~v~f~t~i~HPni~~~~G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~ 126 (152)
T 2onu_A 48 WKVHVTL-PDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASL 126 (152)
T ss_dssp EEEEEEC-CTTTTTSCCEEEESSCCCCTTBCTTTCBBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHH
T ss_pred EEEEEcC-cccCCCCCCeEEEecCCccCcCcCcCCeEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHH
Confidence 4578888 99999999999999999999999659999999999999999999999999 689999999999999999999
Q ss_pred HhhCHHHHHHHHHHHHHHHHH
Q psy17486 81 YKENPEMFTLTARHWTNVYAG 101 (172)
Q Consensus 81 ~~~~~~~f~~~ar~~t~~~a~ 101 (172)
|++|++.|.++||+||++||.
T Consensus 127 ~~~d~~~y~~~v~~~~~~~a~ 147 (152)
T 2onu_A 127 LMKDKNIYEEKVKEYVKLYAS 147 (152)
T ss_dssp HHHCHHHHHHHHHHHHHHHSC
T ss_pred HHHCHHHHHHHHHHHHHHhcc
Confidence 999999998888888888774
No 28
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=99.97 E-value=8.9e-32 Score=203.88 Aligned_cols=98 Identities=29% Similarity=0.577 Sum_probs=89.2
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCC-CCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQ 80 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~-~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~ 80 (172)
+..+|.| |++||++||+|+|.|+||||||+. +|.|||++|. ++|+|+++|.+||.+|+++|.+|++++|+|.+|+++
T Consensus 51 f~~~i~f-p~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~ 128 (154)
T 1c4z_D 51 FRIEINF-PAEYPFKPPKITFKTKIYHPNIDE-KGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEE 128 (154)
T ss_dssp EEEEEEC-CTTTTTSCCEEEESSCCCCTTBCT-TCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHH
T ss_pred EEEEEEe-CCCCCCCCCEEEEeCCCccccCCC-CCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHH
Confidence 5678899 999999999999999999999995 9999999996 899999999999999999999999999999999999
Q ss_pred HhhCHHHHHHHHHHHHHHHHH
Q psy17486 81 YKENPEMFTLTARHWTNVYAG 101 (172)
Q Consensus 81 ~~~~~~~f~~~ar~~t~~~a~ 101 (172)
|++|++.|.++||+||++||.
T Consensus 129 ~~~~~~~f~~~~~~~~~~~a~ 149 (154)
T 1c4z_D 129 YSKDRKKFCKNAEEFTKKYGE 149 (154)
T ss_dssp HHTCSSTTHHHHHHHHTTC--
T ss_pred HHHhHHHHHHHHHHHHHHhcc
Confidence 999999996666666666664
No 29
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=99.97 E-value=2.6e-31 Score=202.75 Aligned_cols=98 Identities=24% Similarity=0.497 Sum_probs=91.3
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCC--CcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~--~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~ 79 (172)
+..+|.| |++||++||+|+|.|+||||||+ .+|.||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+|+.
T Consensus 61 f~~~i~f-p~~YP~~PP~v~f~t~i~HPnv~-~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~ 138 (161)
T 2grr_A 61 FKLRMLF-KDDYPSSPPKCKFEPPLFHPNVY-PSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYT 138 (161)
T ss_dssp EEEEEEC-CTTTTSSCCEEEESSCCCSTTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHH
T ss_pred EEEEEEc-CcccCCCCCEEEEecCcccCCCC-CCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHH
Confidence 4568888 99999999999999999999999 499999999975 8999999999999999999999999999999999
Q ss_pred HHhhCHHHHHHHHHHHHHHHHH
Q psy17486 80 QYKENPEMFTLTARHWTNVYAG 101 (172)
Q Consensus 80 ~~~~~~~~f~~~ar~~t~~~a~ 101 (172)
+|++|+++|.++||+||++||.
T Consensus 139 ~~~~~~~~y~~~~~~~~~~~a~ 160 (161)
T 2grr_A 139 IYCQNRVEYEKRVRAQAKKFAP 160 (161)
T ss_dssp HHHHCHHHHHHHHHHHHHHTCC
T ss_pred HHHHCHHHHHHHHHHHHHHHhc
Confidence 9999999998888888877764
No 30
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=99.97 E-value=7.6e-32 Score=207.57 Aligned_cols=100 Identities=21% Similarity=0.400 Sum_probs=94.8
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHH-HHhhcCCCCCChHHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSL-QALMAAAEPDDPQDAVVAKQ 80 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i-~~ll~~p~~~~p~n~~aa~~ 80 (172)
+..+|.| |++||++||+|+|.|+||||||+..+|.|||++|.++|+|+++|++||.+| ++||.+|++++|+|.+|+++
T Consensus 57 f~~~i~f-p~~YP~~PP~v~F~t~i~HPNi~~~~G~iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~ 135 (171)
T 1yf9_A 57 WMLHVQL-PSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHL 135 (171)
T ss_dssp EEEEEEC-CTTTTTSCCEEEESSCCCBTTBCTTTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHH
T ss_pred EEEEEEc-CCCCCCCCCeEEeecCcccccCcccCCeEeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHH
Confidence 4578888 999999999999999999999995599999999999999999999999997 79999999999999999999
Q ss_pred HhhCHHHHHHHHHHHHHHHHHH
Q psy17486 81 YKENPEMFTLTARHWTNVYAGV 102 (172)
Q Consensus 81 ~~~~~~~f~~~ar~~t~~~a~~ 102 (172)
|++|++.|.++||+||++||..
T Consensus 136 ~~~d~~~y~~~vr~~~~~~a~~ 157 (171)
T 1yf9_A 136 LHADRVGFDALLREHVSTHATP 157 (171)
T ss_dssp HHHCHHHHHHHHHHHHHHHCCH
T ss_pred HHHCHHHHHHHHHHHHHHHcCh
Confidence 9999999999999999999874
No 31
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=99.97 E-value=6.3e-32 Score=209.29 Aligned_cols=99 Identities=29% Similarity=0.582 Sum_probs=93.8
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHH-HHHhhcCCCCCChHHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLS-LQALMAAAEPDDPQDAVVAKQ 80 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~-i~~ll~~p~~~~p~n~~aa~~ 80 (172)
+..+|.| |++||++||+|+|.|+||||||+..+|.|||++|.++|+|+++|++||.+ |+++|.+|++++|+|.+|+++
T Consensus 70 f~l~i~f-p~~YP~~PP~V~F~t~i~HPNV~~~~G~ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~ 148 (179)
T 2z5d_A 70 WKVRVDL-PDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAM 148 (179)
T ss_dssp EEEEEEC-CTTTTTSCCEEEESSCCCBTTBCTTTCBBCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHH
T ss_pred EEEEeeC-CCCCCCCCceEEEecCCccCcCCCCCCeEeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHH
Confidence 4568888 99999999999999999999999659999999999999999999999999 999999999999999999999
Q ss_pred HhhCHHHHHHHHHHHHHHHHH
Q psy17486 81 YKENPEMFTLTARHWTNVYAG 101 (172)
Q Consensus 81 ~~~~~~~f~~~ar~~t~~~a~ 101 (172)
|++|+++|.++||+||++||.
T Consensus 149 ~~~d~~~y~~~vr~~~~~~a~ 169 (179)
T 2z5d_A 149 YLHRPEEYKQKIKEYIQKYAT 169 (179)
T ss_dssp HHHCHHHHHHHHHHHHHHHSS
T ss_pred HHHCHHHHHHHHHHHHHHHcc
Confidence 999999998888888888886
No 32
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=99.97 E-value=4.6e-31 Score=203.38 Aligned_cols=99 Identities=20% Similarity=0.363 Sum_probs=93.7
Q ss_pred CCcEEEEcCCCCCCCCCeeEEec-ccccccccCCCCceecccCC-CCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLT-KIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t-~i~HPnV~~~~G~icl~~l~-~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~ 79 (172)
+..+|.| |++||++||+|+|.| +||||||+..+|.|||++|. ++|+|+++|.+||.+|+++|.+|++++|+|.+|++
T Consensus 67 f~~~i~f-p~~YP~~PP~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~ 145 (172)
T 2y9m_A 67 FRILIEV-PSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGN 145 (172)
T ss_dssp EEEEEEC-CTTTTTSCCEEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHH
T ss_pred EEEEEEC-CCcCCCCCCEEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHH
Confidence 4678888 999999999999999 99999997569999999998 89999999999999999999999999999999999
Q ss_pred HHhh-CHHHHHHHHHHHHHHHHH
Q psy17486 80 QYKE-NPEMFTLTARHWTNVYAG 101 (172)
Q Consensus 80 ~~~~-~~~~f~~~ar~~t~~~a~ 101 (172)
+|++ |++.|.++||+||++++.
T Consensus 146 ~~~~~d~~~f~~~~~~~~~~~~~ 168 (172)
T 2y9m_A 146 IIRCGDMSAYQGIVKYFLAERER 168 (172)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCHHHHHHHHHHHHHHHHh
Confidence 9999 999999999999998864
No 33
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=99.97 E-value=7.6e-31 Score=203.29 Aligned_cols=97 Identities=33% Similarity=0.570 Sum_probs=91.2
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY 81 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~ 81 (172)
+..+|.| |++||++||+|+|.|+||||||+. +|.|||++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|
T Consensus 79 f~l~i~f-p~~YP~~PP~V~F~T~i~HPNV~~-~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~ 156 (179)
T 1i7k_A 79 YKLSLEF-PSGYPYNAPTVKFLTPCYHPNVDT-QGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW 156 (179)
T ss_dssp EEEEEEC-CTTTTTSCCEEEESSCCCSTTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT
T ss_pred EEEEEEC-CCcCCCCCceEEEecCCccCcccc-CCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh
Confidence 4678888 999999999999999999999996 99999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHHHHHHH
Q psy17486 82 KENPEMFTLTARHWTNVYAG 101 (172)
Q Consensus 82 ~~~~~~f~~~ar~~t~~~a~ 101 (172)
+|+++|.++|++++++++.
T Consensus 157 -~d~~~f~~~v~~~v~~~~~ 175 (179)
T 1i7k_A 157 -KNPTAFKKYLQETYSKQVT 175 (179)
T ss_dssp -TSHHHHHHHHHHHHHTTCC
T ss_pred -hCHHHHHHHHHHHHHHHhc
Confidence 9999998888888877653
No 34
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=99.96 E-value=2.6e-30 Score=197.05 Aligned_cols=95 Identities=25% Similarity=0.504 Sum_probs=89.5
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY 81 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~ 81 (172)
+..+|.| |++||++||+|+|.|+||||||+. +|.|||++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|
T Consensus 53 f~~~i~f-p~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~ 130 (160)
T 1y8x_A 53 FVFSFKV-GQGYPHDPPKVKCETMVYHPNIDL-EGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVL 130 (160)
T ss_dssp EEEEEEC-CTTTTTSCCEEEECSCCCBTTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHH
T ss_pred EEEEEeC-CCcCCCCCCEEEEecCCccCcCCC-CCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHH
Confidence 5678899 999999999999999999999995 89999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHHHH
Q psy17486 82 KENPEMFTLTARHWTNV 98 (172)
Q Consensus 82 ~~~~~~f~~~ar~~t~~ 98 (172)
++|++.|.++||++++.
T Consensus 131 ~~~~~~f~~~v~~~v~~ 147 (160)
T 1y8x_A 131 QNNRRLFEQNVQRSMRG 147 (160)
T ss_dssp HSCHHHHHHHHHHHHHS
T ss_pred HHCHHHHHHHHHHHHhh
Confidence 99999997777777653
No 35
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=99.96 E-value=3.6e-30 Score=201.22 Aligned_cols=94 Identities=29% Similarity=0.572 Sum_probs=88.0
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY 81 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~ 81 (172)
+..+|.| |++||++||+|+|.|+||||||+. +|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|
T Consensus 82 f~~~i~f-p~~YP~~PP~v~f~t~i~HPnV~~-~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~ 159 (190)
T 3o2u_A 82 INFNLDF-NEVYPIEPPKVVCLKKIFHPNIDL-KGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLL 159 (190)
T ss_dssp EEEEEEC-CTTTTTSCCEEEECSCCCCTTBCT-TSBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred EEEEEEC-CCCCCCCCceeEEecCcccCCCCC-CCeEechhccCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHH
Confidence 5678899 999999999999999999999995 99999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHHH
Q psy17486 82 KENPEMFTLTARHWTN 97 (172)
Q Consensus 82 ~~~~~~f~~~ar~~t~ 97 (172)
++|++.|.++||+|++
T Consensus 160 ~~d~~~f~~~ar~~~~ 175 (190)
T 3o2u_A 160 CEGEKEFAEAVRLTMS 175 (190)
T ss_dssp HTCHHHHHHHHHHHHB
T ss_pred HHCHHHHHHHHHHHHH
Confidence 9999999666666654
No 36
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=99.96 E-value=6.9e-30 Score=198.09 Aligned_cols=95 Identities=24% Similarity=0.466 Sum_probs=89.7
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY 81 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~ 81 (172)
+..+|.| |++||++||+|+|.|+||||||+. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+|+.+|
T Consensus 73 f~~~i~f-p~~YP~~PP~v~F~t~i~HPNV~~-~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~ 150 (180)
T 2nvu_C 73 FVFSFKV-GQGYPHDPPKVKCETMVYHPNIDL-EGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVL 150 (180)
T ss_dssp EEEEEEC-CTTTTTSCCEEEECSCCCBTTBCT-TSBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred EEEEEeC-CCcCCCCCCcCceeccCccCCCCC-CCcEEcccccccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHH
Confidence 5678899 999999999999999999999995 89999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHHHH
Q psy17486 82 KENPEMFTLTARHWTNV 98 (172)
Q Consensus 82 ~~~~~~f~~~ar~~t~~ 98 (172)
++|++.|.++||++++.
T Consensus 151 ~~d~~~f~~~v~~~v~~ 167 (180)
T 2nvu_C 151 QNNRRLFEQNVQRSMRG 167 (180)
T ss_dssp HHCHHHHHHHHHHHHHS
T ss_pred HHCHHHHHHHHHHHHhh
Confidence 99999998887777654
No 37
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=99.96 E-value=5.9e-30 Score=198.94 Aligned_cols=100 Identities=27% Similarity=0.498 Sum_probs=93.7
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCC-------------CCcCCcCCHHHHHHHHHHhhcCCC
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALMAAAE 68 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~-------------~~W~p~~~l~~vL~~i~~ll~~p~ 68 (172)
+..+|.| |++||++||+|+|.|+||||||+. +|.||+++|. ++|+|+++|++||++|+++|.+|+
T Consensus 57 f~~~i~f-p~~YP~~PP~v~f~t~i~HPnV~~-~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn 134 (183)
T 3rz3_A 57 FKARLKF-PIDYPYSPPAFRFLTKMWHPNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPN 134 (183)
T ss_dssp EEEEEEC-CTTTTSSCCEEEESSCCCCTTBCT-TSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCC
T ss_pred EEEEEEC-CCCCCCCCCeeEecCCCccCCCCC-CCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCC
Confidence 5678899 999999999999999999999995 9999999996 889999999999999999999999
Q ss_pred CCChHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHH
Q psy17486 69 PDDPQDAVVAKQYKE------NPEMFTLTARHWTNVYAGVV 103 (172)
Q Consensus 69 ~~~p~n~~aa~~~~~------~~~~f~~~ar~~t~~~a~~~ 103 (172)
+++|+|.+|+.+|++ ++++|.++||+++++++...
T Consensus 135 ~~~p~n~~aa~~~~~~~~~~~~~~~y~~~v~~~v~~s~~~~ 175 (183)
T 3rz3_A 135 TFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTKVDA 175 (183)
T ss_dssp CSSCSSHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 78999999999999998644
No 38
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.96 E-value=2.2e-29 Score=216.31 Aligned_cols=99 Identities=40% Similarity=0.677 Sum_probs=95.4
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY 81 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~~~ 81 (172)
+..+|.| |++||++||+|+|.|+||||||+. +|.||+++|+++|+|++||++||.+|+++|.+|++++|+|.+|+++|
T Consensus 52 f~~~i~f-p~~YP~~pP~v~f~t~i~HPnv~~-~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~ 129 (399)
T 4ddg_A 52 FFLTIHF-PTDYPFKPPKVAFTTRIYHPNINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 129 (399)
T ss_dssp EEEEEEC-CSSTTTSCCEEEESSCCCCTTBCT-TCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred EEEEEEC-CcccCCCCcEEEeeccccccccCC-CCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHH
Confidence 4578889 999999999999999999999995 99999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHHHHHHHH
Q psy17486 82 KENPEMFTLTARHWTNVYAGV 102 (172)
Q Consensus 82 ~~~~~~f~~~ar~~t~~~a~~ 102 (172)
++|++.|.++||+||++||..
T Consensus 130 ~~d~~~y~~~~~~~~~~~a~~ 150 (399)
T 4ddg_A 130 KTDREKYNRIAREWTQKYAMG 150 (399)
T ss_dssp HHCHHHHHHHHHHHHHHHTSC
T ss_pred HHCHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999873
No 39
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=99.96 E-value=6.5e-30 Score=196.42 Aligned_cols=94 Identities=27% Similarity=0.522 Sum_probs=87.2
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCC--CCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILK--DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~--~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~ 79 (172)
+..+|.| |++||++||+|+|.|+||||||+..+|.|||++|. ++|+|+++|++||.+|+++|.+|++++|+|.+||+
T Consensus 72 f~l~i~f-p~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~ 150 (169)
T 1yrv_A 72 FQLTIHF-TSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAAR 150 (169)
T ss_dssp EEEEEEC-CTTBTTBCCEEEESSCCCCTTBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHH
T ss_pred EEEEEEC-CccCCCCCCcceecCCCccCcccCCCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHH
Confidence 4578888 99999999999999999999995469999999998 89999999999999999999999999999999999
Q ss_pred HHhhCHHHHHHHHHHHHH
Q psy17486 80 QYKENPEMFTLTARHWTN 97 (172)
Q Consensus 80 ~~~~~~~~f~~~ar~~t~ 97 (172)
+|++|++.|.++ |++++
T Consensus 151 l~~~d~~~y~~~-~~~v~ 167 (169)
T 1yrv_A 151 ILVKDESLYRTI-LRLFN 167 (169)
T ss_dssp HHHSCHHHHHHH-HHHHC
T ss_pred HHHHCHHHHHHH-HHHhh
Confidence 999999999776 66554
No 40
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=99.96 E-value=1.3e-29 Score=195.18 Aligned_cols=92 Identities=27% Similarity=0.634 Sum_probs=60.6
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCC-------------CCcCCcCCHHHHHHHHHHhhcCCC
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALMAAAE 68 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~-------------~~W~p~~~l~~vL~~i~~ll~~p~ 68 (172)
+..+|.| |++||++||+|+|.|+||||||+. +|.||+++|. ++|+|+++|++||.+|+++|.+|+
T Consensus 67 f~~~i~f-p~~YP~~PP~v~F~T~i~HPNV~~-~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn 144 (172)
T 2awf_A 67 FKAHLTF-PKDYPLRPPKMKFITEIWHPNVDK-NGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPN 144 (172)
T ss_dssp EEEEEEC-CTTTTSSCCEEEECSCCCCTTBCT-TCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC-
T ss_pred EEEEEEC-CcccCCCCCcccccCCCccCCCCC-CCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcC
Confidence 4578888 999999999999999999999995 8999999996 689999999999999999999999
Q ss_pred CCChHHHHHHHHHhhCHH-HHHHHHHHH
Q psy17486 69 PDDPQDAVVAKQYKENPE-MFTLTARHW 95 (172)
Q Consensus 69 ~~~p~n~~aa~~~~~~~~-~f~~~ar~~ 95 (172)
+++|+|.+||++|++|++ +|.++||++
T Consensus 145 ~~~p~n~~aa~~~~~d~~~~f~~~vr~~ 172 (172)
T 2awf_A 145 GDSPANVDAAKEWREDRNGEFKRKVARC 172 (172)
T ss_dssp ----------------------------
T ss_pred CCCccCHHHHHHHHHCcHHHHHHHHHhC
Confidence 999999999999999999 997777764
No 41
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=99.93 E-value=5.9e-27 Score=179.55 Aligned_cols=90 Identities=20% Similarity=0.412 Sum_probs=82.3
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHH-HHHHhhcC--CCCCChHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLL-SLQALMAA--AEPDDPQDAVVA 78 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~-~i~~ll~~--p~~~~p~n~~aa 78 (172)
+..+|.| |++||++||+|+|.|+||||||+ .+|.||+++|.++|+|+++++++|+ .|++|+.. |++++|+|.+|+
T Consensus 71 f~~~i~f-p~~YP~~pP~v~f~t~i~HPnv~-~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa 148 (167)
T 4ds2_A 71 YQLSVLF-SDDYPHEPPTVRFVTPVYSPLVT-GEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEAR 148 (167)
T ss_dssp EEEEEEC-CTTTTTSCCEEEESSCCCCSSCC-TTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHH
T ss_pred EEEEEEC-CCCCCCCCCEEEEeCCcccccCC-CCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHH
Confidence 4578889 99999999999999999999999 5999999999999999999999754 67788875 899999999999
Q ss_pred HHHhhCHHHHHHHHH
Q psy17486 79 KQYKENPEMFTLTAR 93 (172)
Q Consensus 79 ~~~~~~~~~f~~~ar 93 (172)
++|++|+++|.++||
T Consensus 149 ~l~~~d~~~f~~~vr 163 (167)
T 4ds2_A 149 HYLEKFPQDFAARVR 163 (167)
T ss_dssp HHHHHCHHHHHHHHT
T ss_pred HHHHHCHHHHHHHHh
Confidence 999999999977776
No 42
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=99.93 E-value=1.2e-26 Score=193.53 Aligned_cols=122 Identities=19% Similarity=0.321 Sum_probs=102.2
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecc-----cccccccCCCCceecccCC-------CCcCCcC-CHHHHHHHHHHhhc--C
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTK-----IWHPNISSVTGAICLDILK-------DQWAAAM-TLRTVLLSLQALMA--A 66 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~-----i~HPnV~~~~G~icl~~l~-------~~W~p~~-~l~~vL~~i~~ll~--~ 66 (172)
+..+|.| |++||++||+|+|.|+ ||||||+ .+|.|||++|. ++|+|++ +|.+||++|++||. +
T Consensus 129 F~l~I~f-P~dYP~~PP~V~F~T~~g~~~ifHPNV~-~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~ 206 (323)
T 3ceg_A 129 FEFDVYF-PQDYPSSPPLVNLETTGGHSVRFNPNLY-NDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAE 206 (323)
T ss_dssp EEEEEEC-CTTTTTSCCEEEECCSTTTTCCCBTTBC-TTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSS
T ss_pred EEEEEeC-CCCCCCCCCeEEEeccCCCcccccCCCC-cCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCC
Confidence 4678888 9999999999999998 9999999 49999999997 6899999 89999999999996 6
Q ss_pred CCCCChHHHHH--HHHHhhCHHHHHHHHHHHHHHHHHH-------------HHHhhhcCchhhHHHHHHHHHHh
Q psy17486 67 AEPDDPQDAVV--AKQYKENPEMFTLTARHWTNVYAGV-------------VAKQYKENPEMFTLTARHWTNVY 125 (172)
Q Consensus 67 p~~~~p~n~~a--a~~~~~~~~~f~~~ar~~t~~~a~~-------------~~~~~~~~~~~~~~~a~~w~~~~ 125 (172)
|++++|++.++ +.+|.+|++.|.++||+||.+||.. +..++.-....+.+..+.|.+..
T Consensus 207 Pn~~dP~~~~a~a~~~~~~d~~~Y~~~vr~~t~k~A~~~~l~~Pp~~f~~~i~~hF~~~~~~i~~~~~~w~~e~ 280 (323)
T 3ceg_A 207 PYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWAMLEQIRNPSPCFKEVIHKHFYLKRVEIMAQCEEWIADI 280 (323)
T ss_dssp GGGGSTTGGGGTTSHHHHHHHHHHHHHHHHHHHHHTTHHHHHSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccCHHHHHhhhhhhhHHHHHHHHHHHHHHHhhHHHHhCCCcccHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 77799999987 5789999999999999999999853 23344433444555566776543
No 43
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=99.90 E-value=2.2e-25 Score=169.13 Aligned_cols=80 Identities=26% Similarity=0.365 Sum_probs=72.9
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCce---ecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAI---CLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVA 78 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~i---cl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa 78 (172)
+..+|.| |++||++||+|+|.|+||||||+. +|.| ||++|. +|+|+++|++||.+|+++|.+|++++|+|.+++
T Consensus 74 f~l~i~f-p~~YP~~PP~v~F~t~i~HPNV~~-~G~icisCL~iL~-~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa 150 (156)
T 2q0v_A 74 YSLTIFC-DDNYPDSPPTVKFDTKIEMSCVDN-CGRVIKNNLHILK-NWNRNYTIETILISLRQEMLSSANKRLPQPNEG 150 (156)
T ss_dssp EEEEEEC-CTTTTTSCCEEEESBCCCCTTBCT-TSBBCGGGSHHHH-TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTT
T ss_pred EEEEEEC-CCcCCCCCCeEEEEcccccCCCcc-CCeEehhhccccc-CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHH
Confidence 4578888 999999999999999999999995 8999 899987 599999999999999999999999999999999
Q ss_pred HHHhhC
Q psy17486 79 KQYKEN 84 (172)
Q Consensus 79 ~~~~~~ 84 (172)
.+|++|
T Consensus 151 ~~y~~n 156 (156)
T 2q0v_A 151 EVYSNN 156 (156)
T ss_dssp CBC---
T ss_pred HHhhhC
Confidence 998765
No 44
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=99.89 E-value=1.8e-24 Score=164.62 Aligned_cols=76 Identities=20% Similarity=0.293 Sum_probs=70.9
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCC--CCcCCcCCHHHHHHHHHHhhc-CCCCCChHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILK--DQWAAAMTLRTVLLSLQALMA-AAEPDDPQDAVVA 78 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~--~~W~p~~~l~~vL~~i~~ll~-~p~~~~p~n~~aa 78 (172)
+..+|.| |++||++||+|+|.|+||||||+..+|.||+++|. ++|+|+++|++||.+|+++|. +|++++|+|.+++
T Consensus 78 f~l~i~f-p~~YP~~PP~v~F~T~i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 156 (160)
T 2a4d_A 78 YSLKIEC-GPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 156 (160)
T ss_dssp EEEEEEC-CTTTTTSCCEEEESBCCCCTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred EEEEEEC-CCcCCCCCcEEEEecCceeCCEECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhc
Confidence 4578888 99999999999999999999998669999999997 899999999999999999995 6999999999886
No 45
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=99.88 E-value=4e-25 Score=164.49 Aligned_cols=78 Identities=22% Similarity=0.393 Sum_probs=71.8
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCce--ecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAI--CLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~i--cl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~ 79 (172)
+..+|.| |++||++||+|+|.|+||||||+..+|.| ||++|. +|+|+++|++||.+|+++|.+|++++|+|.+++.
T Consensus 59 f~~~i~f-p~~YP~~PP~v~f~t~i~HPnv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~ 136 (138)
T 1jat_B 59 YSLSIDC-GPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMATPANKKLRQPKEGE 136 (138)
T ss_dssp EEEEEEC-CTTTTTSCCEEEESBCCCCTTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTC
T ss_pred EEEEEEC-CCCCCCCCCceEEEcccccCCEeCCCCEEeeecccCC-CCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhh
Confidence 4578888 99999999999999999999999756999 999886 8999999999999999999999999999998876
Q ss_pred HH
Q psy17486 80 QY 81 (172)
Q Consensus 80 ~~ 81 (172)
+|
T Consensus 137 ~y 138 (138)
T 1jat_B 137 TF 138 (138)
T ss_dssp BC
T ss_pred cC
Confidence 54
No 46
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=99.88 E-value=4.5e-24 Score=164.00 Aligned_cols=77 Identities=19% Similarity=0.300 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCC--CCcCCcCCHHHHHHHHHHhhc-CCCCCChHHHHH
Q psy17486 1 MVDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILK--DQWAAAMTLRTVLLSLQALMA-AAEPDDPQDAVV 77 (172)
Q Consensus 1 ~~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~--~~W~p~~~l~~vL~~i~~ll~-~p~~~~p~n~~a 77 (172)
+++.+|.| |++||++||+|+|.|+||||||+..+|.||+++|. ++|+|++||++||.+|+++|. +|++++|+|.++
T Consensus 87 ~f~l~i~f-p~~YP~~PP~v~F~T~i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~ea 165 (170)
T 2hlw_A 87 IYSLKIEC-GPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 165 (170)
T ss_dssp CBCEEEEC-CSSCTTSCCEEEECBCCCCSSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSC
T ss_pred EEEEEEEC-CCCCCCCCCeeEEecccccCCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCCCCccc
Confidence 36788999 99999999999999999999998669999999997 899999999999999999997 599999999887
Q ss_pred H
Q psy17486 78 A 78 (172)
Q Consensus 78 a 78 (172)
+
T Consensus 166 a 166 (170)
T 2hlw_A 166 Q 166 (170)
T ss_dssp C
T ss_pred c
Confidence 6
No 47
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=99.87 E-value=8.6e-23 Score=149.50 Aligned_cols=67 Identities=24% Similarity=0.463 Sum_probs=59.1
Q ss_pred CCcEEEEcCCCCCCCCCeeEEeccc-ccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCC
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKI-WHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD 70 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i-~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~ 70 (172)
+..+|.| |++||++||+|+|.|+| |||||+. +|.||+++|.++|+|++||++||.+|+++|.+|+..
T Consensus 55 f~~~i~f-p~~YP~~PP~v~f~t~i~~HPnv~~-~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~~~ 122 (125)
T 2fo3_A 55 YKLKIIF-PDDYPLKPPIVYFLQKPPKHTHVYS-NGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEK 122 (125)
T ss_dssp EEEEEEC-CTTTTTSCCEEEECSSCCCBTTBCT-TSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC-----
T ss_pred EEEEEEc-CCCCCCCCCEEEEeCCCCCCCcCCC-CCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCcccc
Confidence 4578888 99999999999999997 9999995 999999999999999999999999999999999865
No 48
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=99.86 E-value=3.1e-22 Score=148.57 Aligned_cols=66 Identities=24% Similarity=0.483 Sum_probs=62.1
Q ss_pred CCcEEEEcCCCCCCCCCeeEEeccc-ccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCC
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKI-WHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEP 69 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i-~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~ 69 (172)
+..+|.| |++||++||+|+|.|+| |||||+. +|.||+++|.++|+|+++|++||.+|+++|.+|+.
T Consensus 69 f~~~i~f-p~~YP~~PP~v~f~t~i~~HPnv~~-~G~ICl~iL~~~WsP~~ti~~vL~si~sll~~p~~ 135 (136)
T 2h2y_A 69 YKIKIIF-PDNYPLKPPIVYFLQKPPKHTHVYS-NGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE 135 (136)
T ss_dssp EEEEEEC-CTTTTTSCCEEEECSSCCCCTTBCT-TCCBCCGGGTTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred EEEEEEe-CCCCCCCCCEEEEeCCCCCCCcCCC-CCEEECccccCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence 4578888 99999999999999997 9999995 99999999999999999999999999999999874
No 49
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=99.85 E-value=2.2e-22 Score=156.55 Aligned_cols=89 Identities=15% Similarity=0.335 Sum_probs=75.6
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccc-cccCCCCceecccCC-CCcCCcCCHHHHHHHHHHhhcCCCCCChHHHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHP-NISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HP-nV~~~~G~icl~~l~-~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~aa~ 79 (172)
+..+|.| |++||++||+|+|.|++||| ||+ .+|.|||++|. ++|+|+++|++||++|+++|.+|++..
T Consensus 91 f~l~i~f-p~~YP~~PP~V~f~tpi~hPnnV~-~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a~~-------- 160 (186)
T 1zuo_A 91 ILLNFSF-KDNFPFDPPFVRVVLPVLSGGYVL-GGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARV-------- 160 (186)
T ss_dssp EEEEEEC-CTTTTSSCCEEEEEESCEESTTBC-GGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEE--------
T ss_pred EEEEEEC-CCCCCCCCCeEEEeCCccCCCccC-CCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCChhH--------
Confidence 4578888 99999999999999999999 699 49999999996 789999999999999999999986532
Q ss_pred HHhhCHHHHHHHHHHHHHHHH
Q psy17486 80 QYKENPEMFTLTARHWTNVYA 100 (172)
Q Consensus 80 ~~~~~~~~f~~~ar~~t~~~a 100 (172)
.|..++.+|.+++++.+.+.+
T Consensus 161 ~~~~~~~~Y~~~~~~~~~~~~ 181 (186)
T 1zuo_A 161 QFGANKNQYNLARAQQSYNSI 181 (186)
T ss_dssp CTTCCTTCCCHHHHHHHHHHH
T ss_pred hhccCHHHHhHHHHHHHHHHH
Confidence 455567777777777666543
No 50
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=99.84 E-value=2.2e-21 Score=143.96 Aligned_cols=62 Identities=29% Similarity=0.599 Sum_probs=58.5
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccc--cccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhc
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIW--HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMA 65 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~--HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~ 65 (172)
+..+|.| |++||++||+|+|.|+|| ||||+. +|.||+++|.++|+|+++|++||.+|+++|.
T Consensus 73 f~l~i~f-p~~YP~~PP~v~F~T~i~~~HPNV~~-~G~ICL~iL~~~WsP~~ti~~vL~sI~slL~ 136 (136)
T 2a7l_A 73 FQLLFKF-SSRYPFDSPQVMFTGENIPVHPHVYS-NGHICLSILTEDWSPALSVQSVCLSIISMLS 136 (136)
T ss_dssp EEEEEEE-CTTTTTSCCEEEEESSCCCCBTTBCT-TCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred EEEEEEC-CCCCCCCCCEEEEeCCCcCCCccCCC-CCeEEchhcCCCCCCCCcHHHHHHHHHHHhC
Confidence 4578889 999999999999999999 999995 9999999999999999999999999999984
No 51
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=99.78 E-value=2.2e-19 Score=139.70 Aligned_cols=67 Identities=21% Similarity=0.377 Sum_probs=55.6
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccC---CCCcCCcCCHHHHHHHHHHhhcCCCCCCh
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDIL---KDQWAAAMTLRTVLLSLQALMAAAEPDDP 72 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l---~~~W~p~~~l~~vL~~i~~ll~~p~~~~p 72 (172)
++.+|.| |++||++||+|+|.|+ |||+++ +|.|||++| .++|+|+++|.+||.+|+++|.+|+++..
T Consensus 63 f~l~i~f-P~~YP~~PP~v~f~T~--~~~~~~-~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~g 132 (187)
T 2f4w_A 63 YHGKLIF-PREFPFKPPSIYMITP--NGRFKC-NTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLG 132 (187)
T ss_dssp EEEEEEC-CTTTTSSCCEEEECSC--CSSBCT-TSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCTT
T ss_pred EEEEEEc-CCCCCCCCCcccccCC--Cceecc-CCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCCc
Confidence 4678888 9999999999999999 999985 899999999 68999999999999999999999998743
No 52
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.54 E-value=4.1e-15 Score=113.00 Aligned_cols=67 Identities=22% Similarity=0.312 Sum_probs=58.8
Q ss_pred CCcEEEEcCCCCCCCCCeeEEec-------c---cc-cccccCCCCceecccCCCCcCC-cCCHHHHHHHHHHhhcCCCC
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLT-------K---IW-HPNISSVTGAICLDILKDQWAA-AMTLRTVLLSLQALMAAAEP 69 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t-------~---i~-HPnV~~~~G~icl~~l~~~W~p-~~~l~~vL~~i~~ll~~p~~ 69 (172)
|...|.| |.+||++||.|.|.+ + |+ |||||. +|+||+++|. +|+| ..+|.++|.+|+++|.+|++
T Consensus 83 ~pi~Iwl-P~~YP~~PP~v~v~p~t~~m~~~~~~I~~hpnVD~-~G~I~lpyL~-~W~p~~s~L~~ll~~l~~lf~ep~~ 159 (162)
T 3r3q_A 83 IPVIMWV-PSMYPVKPPFISINLENFDMNTISSSLPIQEYIDS-NGWIALPILH-AWDPAAMNLIMVVQELMSLLHEPPQ 159 (162)
T ss_dssp EEEEEEC-CTTTTTSCCEEEECGGGCCTTTSCTTSTHHHHBCT-TSBBCCGGGG-SCCGGGCCHHHHHHHHHHTTSCCCC
T ss_pred ccEEEEe-CcccCCCCCEEEEECCCccccccccccCCCCCCCC-CCcEeCcccc-cCCCCcCcHHHHHHHHHHHhcCCCC
Confidence 3456777 999999999998865 1 88 999995 9999999995 6998 68999999999999999999
Q ss_pred CC
Q psy17486 70 DD 71 (172)
Q Consensus 70 ~~ 71 (172)
+.
T Consensus 160 d~ 161 (162)
T 3r3q_A 160 DQ 161 (162)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 53
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.51 E-value=3e-15 Score=113.37 Aligned_cols=72 Identities=10% Similarity=0.068 Sum_probs=58.6
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecc-cccccccCCCCceecccC-CC---CcCCcCCHHHHHHHHHHhhcCCCCCChHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTK-IWHPNISSVTGAICLDIL-KD---QWAAAMTLRTVLLSLQALMAAAEPDDPQDAV 76 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~-i~HPnV~~~~G~icl~~l-~~---~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~~ 76 (172)
|+.+|.| |++||.+||+|+|.++ ++||||+. +|+||||+| +. .|+|.++|.++|.- ....++..|
T Consensus 85 F~L~~~f-Pe~YP~~PPeV~F~~~~~~hpnmY~-~G~ICLdIL~kp~Ws~~~P~~~IahiL~l--------gl~pwla~e 154 (172)
T 2z6o_A 85 FDIEFDI-PITYPTTAPEIAVPELDGKTAKMYR-GGKICLTDHFKPLWARNVPKFGLAHLMAL--------GLGPWLAVE 154 (172)
T ss_dssp EEEEEEC-CTTTTTSCCCCBCGGGTTTCSSBCT-TSBBCCCTTHHHHHHHHTTSCCHHHHHHH--------THHHHHHHH
T ss_pred EEEEEEC-CCCCCCCCCeeeeCCCCCCCCCCCC-CCcEechhhccccccccCCccCHHHHHhh--------ccCchhhhh
Confidence 5678888 9999999999999998 99999995 999999999 43 45699999999842 334567777
Q ss_pred HHHHHhh
Q psy17486 77 VAKQYKE 83 (172)
Q Consensus 77 aa~~~~~ 83 (172)
+..+..+
T Consensus 155 ip~lv~~ 161 (172)
T 2z6o_A 155 IPDLIQK 161 (172)
T ss_dssp HHHHHHH
T ss_pred hHHHHHc
Confidence 7766543
No 54
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=99.50 E-value=9.8e-15 Score=103.59 Aligned_cols=81 Identities=21% Similarity=0.222 Sum_probs=36.2
Q ss_pred CCCCCChHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhcCchhhHHHHHHHHHHhcCCCCCC---CchHHHHHHH
Q psy17486 66 AAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKN---PDFDSKIQRL 142 (172)
Q Consensus 66 ~p~~~~p~n~~aa~~~~~~~~~f~~~ar~~t~~~a~~~~~~~~~~~~~~~~~a~~w~~~~~~~~~~~---~~~~~kv~~l 142 (172)
-.....|.++++|++|+++++.| ..+|+.||..|++.+... ..++.+++.|
T Consensus 20 ~~~~~~PQDA~VA~qy~~~~~~f--------------------------~~TAr~WT~~~a~~~~~~~~e~~~~~qL~qL 73 (108)
T 2cwb_A 20 GETTTEAVDAATAEKVFKQYAND--------------------------NGVDGEWTYDDATKTFTVTEGSQWQPQLQQL 73 (108)
T ss_dssp ---------------------------------------------------------------------CCTTHHHHHHH
T ss_pred CcccCCchhHHHHHHHHhchhcc--------------------------ccccccccccCcCCCCCCCcccchHHHHHHH
Confidence 34456789999999999999999 778888886666544321 3468999999
Q ss_pred HHcCC-ChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486 143 TDMGV-MSHDARVALSTYNWELERATEAIFT 172 (172)
Q Consensus 143 ~~~gf-~~~~a~~aLs~~~W~~~~a~~~l~~ 172 (172)
++||| +++.++.||+..+||++.|+|+|++
T Consensus 74 ~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 74 RDMGIQDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp HTTTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 99999 6689999999999999999999983
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.08 E-value=6.4e-11 Score=88.42 Aligned_cols=59 Identities=14% Similarity=0.244 Sum_probs=51.3
Q ss_pred cEEEEcCCCCCCCCCeeEEecc------cccccccCCCCceecccCCCCcCC-cCCHHHHHHHHHHhhcC
Q psy17486 4 TTVKFVTKIWHPNISSVKFLTK------IWHPNISSVTGAICLDILKDQWAA-AMTLRTVLLSLQALMAA 66 (172)
Q Consensus 4 ~~i~F~p~~YP~~pP~v~F~t~------i~HPnV~~~~G~icl~~l~~~W~p-~~~l~~vL~~i~~ll~~ 66 (172)
..|-| |.+||++||.| |.++ ..|||||. +|+||++.|.+ |++ ..+|.+++..++++|..
T Consensus 73 i~Iwl-p~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~-~G~i~lpyL~~-W~~~~snL~~ll~~l~~~F~~ 138 (146)
T 3obq_A 73 ICLWL-LDTYPYNPPIC-FVKPTSSMTIKTGKHVDA-NGKIYLPYLHE-WKHPQSDLLGLIQVMIVVFGD 138 (146)
T ss_dssp EEEEC-CTTTTTSCCEE-EECCCTTEEECCBTTBCT-TCBBCCHHHHT-CCTTTCCHHHHHHHHHHHHHH
T ss_pred EEEEe-CccCCCCCCEE-EEeCCCCCEECCCCCCCC-CCCEecccccc-cCCCCCCHHHHHHHHHHHHhh
Confidence 45666 99999999999 7766 58999996 99999999965 987 78999999999998875
No 56
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=98.96 E-value=7.1e-11 Score=87.80 Aligned_cols=51 Identities=10% Similarity=0.156 Sum_probs=42.6
Q ss_pred CCcEEEEcCCCCCCCCCeeEEecc-cccccccCCCCceecccCCCCcCCc-------CCHHHHH
Q psy17486 2 VDTTVKFVTKIWHPNISSVKFLTK-IWHPNISSVTGAICLDILKDQWAAA-------MTLRTVL 57 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~pP~v~F~t~-i~HPnV~~~~G~icl~~l~~~W~p~-------~~l~~vL 57 (172)
|+..|.| |.+||..||+|+|.+. ++|||++ .+|+||||++ |+|. ++|...|
T Consensus 87 FkLefdi-P~tYP~tPPeI~Fp~ldgkt~kmY-r~GkICLdIh---wkPlW~~n~P~fGiahal 145 (168)
T 3kpa_A 87 FEMNFDI-PVTYPQAPPEIALPELEGKTVKMY-RGGKICMTTH---FFPLWARNVPYFGISHVL 145 (168)
T ss_dssp EEEEEEC-CTTTTTSCCCCBCGGGTTTCSSEE-TTTEECCCTT---HHHHHHHTTTTCCHHHHH
T ss_pred EEEEEeC-CccCCCCCCEeecccccCcCcccc-CCCcEEeccc---cchhhHhcCCchhHHHHH
Confidence 4567888 9999999999999995 8999999 5999999997 6664 5566554
No 57
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.89 E-value=1e-09 Score=67.17 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=36.7
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486 134 DFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172 (172)
Q Consensus 134 ~~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~ 172 (172)
..+.+|+.|++|||+++.|+.||+..+||++.|+++|++
T Consensus 7 ~~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 7 EYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 468899999999999999999999999999999999983
No 58
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=98.86 E-value=4.2e-09 Score=61.43 Aligned_cols=39 Identities=33% Similarity=0.469 Sum_probs=36.1
Q ss_pred CchHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486 133 PDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF 171 (172)
Q Consensus 133 ~~~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~ 171 (172)
++.+.+|+.|++|||+++.|+.||...+||++.|++.|+
T Consensus 2 ~~~~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 2 PGLNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp -CHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 456889999999999999999999999999999999986
No 59
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=98.85 E-value=4.9e-09 Score=64.94 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=37.0
Q ss_pred chHHHHHHHHHcCC-ChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486 134 DFDSKIQRLTDMGV-MSHDARVALSTYNWELERATEAIFT 172 (172)
Q Consensus 134 ~~~~kv~~l~~~gf-~~~~a~~aLs~~~W~~~~a~~~l~~ 172 (172)
.+..+|+.|++||| +++.++.||+..+||++.|+++|++
T Consensus 11 ~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 11 RFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp TTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 57899999999999 9999999999999999999999985
No 60
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.82 E-value=4.2e-09 Score=69.65 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=38.4
Q ss_pred CCchHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486 132 NPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172 (172)
Q Consensus 132 ~~~~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~ 172 (172)
.+..+.+|+.|++|||+++.|+.||+..+||++.|+++||+
T Consensus 26 ~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 26 VAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp SCCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CcccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 45679999999999999999999999999999999999984
No 61
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=98.81 E-value=6.2e-09 Score=62.88 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=35.0
Q ss_pred hHHHHHHHHHcCC-ChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486 135 FDSKIQRLTDMGV-MSHDARVALSTYNWELERATEAIFT 172 (172)
Q Consensus 135 ~~~kv~~l~~~gf-~~~~a~~aLs~~~W~~~~a~~~l~~ 172 (172)
++.+|+.|++||| +++.++.||+..+||++.|+++|++
T Consensus 7 ~~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 7 YEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 5789999999999 5777899999999999999999985
No 62
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.80 E-value=5.2e-09 Score=62.19 Aligned_cols=37 Identities=32% Similarity=0.591 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486 136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172 (172)
Q Consensus 136 ~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~ 172 (172)
+.+|+.|++|||+++.|+.||...+||++.|+++|++
T Consensus 5 e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 5 SLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 5789999999999999999999999999999999984
No 63
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.79 E-value=1.6e-09 Score=69.94 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCCCCCCCchHHHHHHHHHcCCChHHHHHHHHhcCC-ChHHHHHHhhC
Q psy17486 117 TARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNW-ELERATEAIFT 172 (172)
Q Consensus 117 ~a~~w~~~~~~~~~~~~~~~~kv~~l~~~gf~~~~a~~aLs~~~W-~~~~a~~~l~~ 172 (172)
..|.||..|+..+. +..|+.|++|||+++.|+.||...+| +++.|++.||+
T Consensus 6 ~~r~~t~~ya~~~~-----e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 6 SGRNRQQRPGTIKH-----GSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp CSCCSCCSSCSSSC-----CCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred ccchhhhcccccCC-----HHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 35789999988742 45799999999999999999999999 99999999984
No 64
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=98.77 E-value=5.2e-09 Score=65.06 Aligned_cols=38 Identities=21% Similarity=0.353 Sum_probs=36.1
Q ss_pred chHHHHHHHHHcCC-ChHHHHHHHHhcCCChHHHHHHhh
Q psy17486 134 DFDSKIQRLTDMGV-MSHDARVALSTYNWELERATEAIF 171 (172)
Q Consensus 134 ~~~~kv~~l~~~gf-~~~~a~~aLs~~~W~~~~a~~~l~ 171 (172)
.++.+|+.|++||| +++.++.||+..+||++.|+++|+
T Consensus 10 ~~~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~ 48 (53)
T 2knz_A 10 RFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLL 48 (53)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 46788999999999 999999999999999999999998
No 65
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.68 E-value=2.1e-08 Score=67.70 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=36.1
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486 135 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172 (172)
Q Consensus 135 ~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~ 172 (172)
.+.+|+.|++|||+++.|+.||+..+||++.|+++||+
T Consensus 29 ~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~s 66 (83)
T 1veg_A 29 SQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAH 66 (83)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 47899999999999999999999999999999999983
No 66
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.67 E-value=1.7e-08 Score=63.81 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=35.0
Q ss_pred hHHHHHHHHHcCC-ChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486 135 FDSKIQRLTDMGV-MSHDARVALSTYNWELERATEAIFT 172 (172)
Q Consensus 135 ~~~kv~~l~~~gf-~~~~a~~aLs~~~W~~~~a~~~l~~ 172 (172)
++.+|+.|++||| +++.++.||+..+||++.|+|+|++
T Consensus 17 ~~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 17 YEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp THHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 5789999999999 6788899999999999999999983
No 67
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.65 E-value=3.3e-08 Score=65.42 Aligned_cols=39 Identities=15% Similarity=0.301 Sum_probs=36.3
Q ss_pred chHHHHHHHHHcCC-ChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486 134 DFDSKIQRLTDMGV-MSHDARVALSTYNWELERATEAIFT 172 (172)
Q Consensus 134 ~~~~kv~~l~~~gf-~~~~a~~aLs~~~W~~~~a~~~l~~ 172 (172)
.++.+|+.|++||| +++.++.||+..+||++.|+|+||+
T Consensus 28 ~ye~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 28 RYQQELEELKALGFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp TSHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 47889999999999 7888899999999999999999984
No 68
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=98.65 E-value=9.2e-09 Score=62.39 Aligned_cols=39 Identities=15% Similarity=0.110 Sum_probs=36.6
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486 134 DFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172 (172)
Q Consensus 134 ~~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~ 172 (172)
+....|++|++|||++..|+.||...+||++.|++.||+
T Consensus 3 ~e~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 3 QEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS 41 (47)
T ss_dssp CCHHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 457889999999999999999999999999999999985
No 69
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.62 E-value=4.7e-08 Score=60.92 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=34.4
Q ss_pred chHHHHHHHHHcCCCh-HHHHHHHHhcCCChHHHHHHhh
Q psy17486 134 DFDSKIQRLTDMGVMS-HDARVALSTYNWELERATEAIF 171 (172)
Q Consensus 134 ~~~~kv~~l~~~gf~~-~~a~~aLs~~~W~~~~a~~~l~ 171 (172)
.++.+++.|++|||.. +.++.||+..+||++.|++.|+
T Consensus 8 ~~~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~ 46 (54)
T 2dah_A 8 HFQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLR 46 (54)
T ss_dssp SSHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4688999999999954 5679999999999999999998
No 70
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.62 E-value=3e-08 Score=63.77 Aligned_cols=36 Identities=25% Similarity=0.414 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486 136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF 171 (172)
Q Consensus 136 ~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~ 171 (172)
+++|+.|++|||+++.|+.||...+||++.|+++|+
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~ 45 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDNGNNLEAALNVLL 45 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 788999999999999999999999999999999998
No 71
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.57 E-value=5.3e-08 Score=64.37 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=35.8
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486 135 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172 (172)
Q Consensus 135 ~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~ 172 (172)
-.++|+.|++|||+++.|+.||+..+|+++.|+++|++
T Consensus 29 ~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 29 DQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 37889999999999999999999999999999999983
No 72
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=1.2e-07 Score=60.90 Aligned_cols=37 Identities=32% Similarity=0.381 Sum_probs=35.5
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486 135 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF 171 (172)
Q Consensus 135 ~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~ 171 (172)
...+|+.|++|||+++.|+.||+..+|+++.|+++|+
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~ 45 (63)
T 2dak_A 9 PEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIF 45 (63)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4789999999999999999999999999999999997
No 73
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.47 E-value=1.4e-07 Score=66.03 Aligned_cols=41 Identities=27% Similarity=0.551 Sum_probs=38.5
Q ss_pred CCchHHHHHHHHHc-CCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486 132 NPDFDSKIQRLTDM-GVMSHDARVALSTYNWELERATEAIFT 172 (172)
Q Consensus 132 ~~~~~~kv~~l~~~-gf~~~~a~~aLs~~~W~~~~a~~~l~~ 172 (172)
+++++.+|+.|++| ||+++.|+.||++++||++.|+++||+
T Consensus 36 d~d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lle 77 (104)
T 1wj7_A 36 DADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLE 77 (104)
T ss_dssp CHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred cccHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 45789999999999 999999999999999999999999984
No 74
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.44 E-value=2.5e-07 Score=62.83 Aligned_cols=37 Identities=35% Similarity=0.478 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486 136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172 (172)
Q Consensus 136 ~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~ 172 (172)
..+|++|++|||+++.|+.||+..+|+++.|+++|++
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~ 58 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLE 58 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 7789999999999999999999999999999999984
No 75
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=2.4e-07 Score=55.92 Aligned_cols=37 Identities=35% Similarity=0.448 Sum_probs=34.7
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486 135 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172 (172)
Q Consensus 135 ~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~ 172 (172)
...+|+.|++|||+++.|+.||+..+ +++.|+++|++
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 9 NQQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 47899999999999999999999997 99999999984
No 76
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.38 E-value=5.7e-07 Score=54.92 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=35.0
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486 135 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF 171 (172)
Q Consensus 135 ~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~ 171 (172)
.+..|.+|++|||++++|+.||...+||++.|+..|+
T Consensus 11 ~~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLl 47 (52)
T 2ooa_A 11 VDAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILR 47 (52)
T ss_dssp CHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4689999999999999999999999999999999886
No 77
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.36 E-value=1.1e-06 Score=53.94 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=35.5
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486 134 DFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF 171 (172)
Q Consensus 134 ~~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~ 171 (172)
..+.+|..|++|||++++|+.||...+||++.|+..|+
T Consensus 8 ~~e~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ 45 (53)
T 2d9s_A 8 QLSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILR 45 (53)
T ss_dssp CSHHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHH
Confidence 35788999999999999999999999999999999886
No 78
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.35 E-value=3e-07 Score=58.10 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=36.5
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486 134 DFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172 (172)
Q Consensus 134 ~~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~ 172 (172)
-+.+.|+.|+.|||.+++|+.||++.+.|+++|++.||+
T Consensus 18 se~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFS 56 (63)
T 1wgn_A 18 SERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 357889999999999999999999999999999999984
No 79
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=8.9e-07 Score=59.83 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=35.2
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486 135 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF 171 (172)
Q Consensus 135 ~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~ 171 (172)
-...|+.|++|||+++.|+.||...+|+++.|+++||
T Consensus 29 ~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~ 65 (83)
T 2dai_A 29 DEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLI 65 (83)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3788999999999999999999999999999999998
No 80
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=1e-06 Score=58.24 Aligned_cols=36 Identities=25% Similarity=0.230 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhcC-CChHHHHHHhh
Q psy17486 136 DSKIQRLTDMGVMSHDARVALSTYN-WELERATEAIF 171 (172)
Q Consensus 136 ~~kv~~l~~~gf~~~~a~~aLs~~~-W~~~~a~~~l~ 171 (172)
...|+.|++|||+++.|+.||...+ |+++.|+++||
T Consensus 10 e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~ 46 (74)
T 2dag_A 10 ESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVM 46 (74)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 7889999999999999999999998 58999999998
No 81
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.22 E-value=1e-06 Score=56.67 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhc-CCChHHHHHHhh
Q psy17486 136 DSKIQRLTDMGVMSHDARVALSTY-NWELERATEAIF 171 (172)
Q Consensus 136 ~~kv~~l~~~gf~~~~a~~aLs~~-~W~~~~a~~~l~ 171 (172)
...|++|++|||++..|+.||... +|+++.|+++||
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl 46 (64)
T 1whc_A 10 LTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLM 46 (64)
T ss_dssp CCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 567999999999999999999999 699999999997
No 82
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.17 E-value=2.7e-06 Score=52.67 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=34.5
Q ss_pred hHHHHHHHHHcCC-ChHHHHHHHHhcCCChHHHHHHhh
Q psy17486 135 FDSKIQRLTDMGV-MSHDARVALSTYNWELERATEAIF 171 (172)
Q Consensus 135 ~~~kv~~l~~~gf-~~~~a~~aLs~~~W~~~~a~~~l~ 171 (172)
+..+++.|.+||| |++.-+.+|+.++|++++|++.|+
T Consensus 9 ~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll 46 (54)
T 2cp8_A 9 TAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELL 46 (54)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5668999999999 888889999999999999999987
No 83
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.16 E-value=2e-06 Score=58.24 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=34.9
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhcC-CChHHHHHHhhC
Q psy17486 135 FDSKIQRLTDMGVMSHDARVALSTYN-WELERATEAIFT 172 (172)
Q Consensus 135 ~~~kv~~l~~~gf~~~~a~~aLs~~~-W~~~~a~~~l~~ 172 (172)
-...|+.|++|||+++.|+.||...+ |+++.|+++||+
T Consensus 29 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~ 67 (84)
T 1vek_A 29 NEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLS 67 (84)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 37899999999999999999999885 999999999983
No 84
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.08 E-value=3.4e-06 Score=54.18 Aligned_cols=36 Identities=28% Similarity=0.237 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhcCC-ChHHHHHHhh
Q psy17486 136 DSKIQRLTDMGVMSHDARVALSTYNW-ELERATEAIF 171 (172)
Q Consensus 136 ~~kv~~l~~~gf~~~~a~~aLs~~~W-~~~~a~~~l~ 171 (172)
...|+.|++|||+++.|+.||...++ +++.|+++||
T Consensus 10 e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~ 46 (64)
T 2crn_A 10 PSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLH 46 (64)
T ss_dssp CSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45789999999999999999999876 9999999997
No 85
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.05 E-value=5.5e-06 Score=50.94 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=35.8
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486 134 DFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF 171 (172)
Q Consensus 134 ~~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~ 171 (172)
..+..|..|++|||+++.|+.||.-.+.|++.|++.|+
T Consensus 6 p~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLl 43 (56)
T 2juj_A 6 QLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILR 43 (56)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHH
Confidence 46889999999999999999999999999999999886
No 86
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.04 E-value=4.8e-06 Score=53.87 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=33.4
Q ss_pred hHHHHHHHHHcCCCh-HHHHHHHHhcCCChHHHHHHhhC
Q psy17486 135 FDSKIQRLTDMGVMS-HDARVALSTYNWELERATEAIFT 172 (172)
Q Consensus 135 ~~~kv~~l~~~gf~~-~~a~~aLs~~~W~~~~a~~~l~~ 172 (172)
+...++.|++|||.. +.++.||...++|+++|+|+|++
T Consensus 19 y~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 19 FSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp THHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 567999999999855 55599999999999999999983
No 87
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=97.99 E-value=1.2e-05 Score=47.71 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=35.6
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486 134 DFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF 171 (172)
Q Consensus 134 ~~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~ 171 (172)
.++..|..|++|||+++.|+.||.-.+.|++.|++.|+
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ 40 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILR 40 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHH
Confidence 36889999999999999999999999999999999886
No 88
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=97.96 E-value=8e-06 Score=59.06 Aligned_cols=38 Identities=34% Similarity=0.393 Sum_probs=35.9
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486 135 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172 (172)
Q Consensus 135 ~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~ 172 (172)
....|+.|++|||+++.|+.||...+|+++.|+++|++
T Consensus 78 ~e~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~ 115 (126)
T 2lbc_A 78 PEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFS 115 (126)
T ss_dssp CHHHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 47889999999999999999999999999999999984
No 89
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=97.82 E-value=1.4e-05 Score=60.71 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=38.2
Q ss_pred CCchHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486 132 NPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172 (172)
Q Consensus 132 ~~~~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~ 172 (172)
.++.+.+|++|++|||+++.|+.||..++||.+.|+++||+
T Consensus 127 tpee~eaI~rL~~mGF~r~~viqA~~ac~knee~Aan~L~~ 167 (171)
T 2qsf_X 127 TPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILFS 167 (171)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHTT
T ss_pred CccHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 35678899999999999999999999999999999999984
No 90
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=97.81 E-value=1.9e-05 Score=56.64 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=35.2
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486 135 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172 (172)
Q Consensus 135 ~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~ 172 (172)
..+.|..|.+|||+++.|+.||..++.|+++|+|.|++
T Consensus 76 ~~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~ 113 (118)
T 4ae4_A 76 FLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMA 113 (118)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35679999999999999999999999999999999984
No 91
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=97.70 E-value=2.4e-05 Score=66.28 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=37.2
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486 134 DFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172 (172)
Q Consensus 134 ~~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~ 172 (172)
..+..|+.|++|||+++.|+.||...+||+++|+|+|++
T Consensus 167 ~~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~ 205 (368)
T 1oqy_A 167 EYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT 205 (368)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTT
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 478999999999999999999999999999999999984
No 92
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=97.66 E-value=2.6e-05 Score=66.06 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=37.7
Q ss_pred CchHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486 133 PDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172 (172)
Q Consensus 133 ~~~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~ 172 (172)
++....|+.|++|||+++.|+.||..++||++.|+++||+
T Consensus 323 ~ee~eaI~rL~~mGF~~~~a~~al~a~~~n~e~A~~~L~~ 362 (368)
T 1oqy_A 323 PQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS 362 (368)
T ss_dssp TTTHHHHHHHHHHTCCSHHHHHHTSSSSSCSSHHHHHHHH
T ss_pred CcCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhh
Confidence 5678999999999999999999999999999999999984
No 93
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=97.15 E-value=0.00039 Score=49.74 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=35.9
Q ss_pred CchHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486 133 PDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF 171 (172)
Q Consensus 133 ~~~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~ 171 (172)
+...+.|+.|++|||++..|..||...+.+++.|+++|+
T Consensus 6 ~~e~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~ 44 (118)
T 4ae4_A 6 PSERQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLF 44 (118)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 346788999999999999999999999999999999997
No 94
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.93 E-value=0.0011 Score=40.63 Aligned_cols=39 Identities=26% Similarity=0.124 Sum_probs=34.3
Q ss_pred CchHHHHHHHHHcCCChHHHHHHHHhcCC-ChHHHHHHhh
Q psy17486 133 PDFDSKIQRLTDMGVMSHDARVALSTYNW-ELERATEAIF 171 (172)
Q Consensus 133 ~~~~~kv~~l~~~gf~~~~a~~aLs~~~W-~~~~a~~~l~ 171 (172)
+...+.++.|++|||+++-|..||+.-+. .++.|+|.|.
T Consensus 7 ~vn~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~ 46 (54)
T 2cos_A 7 GVNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYIS 46 (54)
T ss_dssp SCCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHH
Confidence 34588899999999999999999998887 6999999885
No 95
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=96.91 E-value=0.0077 Score=46.52 Aligned_cols=125 Identities=31% Similarity=0.418 Sum_probs=86.2
Q ss_pred CCcEEEEcCCCCCCCC-C-e--e--EEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHH
Q psy17486 2 VDTTVKFVTKIWHPNI-S-S--V--KFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~p-P-~--v--~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~ 75 (172)
..|+|+|.++.|+.+. + . | ..+..-|.|..+- .+|-.-|.++..-....+|.++..+
T Consensus 70 ~pP~v~f~t~i~HPnv~~~~G~iCl~iL~~~W~p~~~i-----------------~~vL~~i~~ll~~p~p~~p~n~~aa 132 (201)
T 3k9o_A 70 NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTL-----------------RTVLLSLQALLAAAEPDDPQDAVVA 132 (201)
T ss_dssp SCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTCCH-----------------HHHHHHHHHHHHSCCTTSCSCHHHH
T ss_pred CCCccccccCcccCCCcCCCCeeeCcccccCCCCCCCH-----------------HHHHHHHHHHhcCCCCCCcccHHHH
Confidence 4689999999987664 2 1 1 1222446665331 1233345666667788999999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhcCchhhHHHHHHHHHHhcCCCCCCCchHHHHHHHHHcCCChHHHHHH
Q psy17486 76 VVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVA 155 (172)
Q Consensus 76 ~aa~~~~~~~~~f~~~ar~~t~~~a~~~~~~~~~~~~~~~~~a~~w~~~~~~~~~~~~~~~~kv~~l~~~gf~~~~a~~a 155 (172)
+....-++.+..- ||+||++||+..... + .++...+... .+|. +.++.++.|...++|.+.|+..
T Consensus 133 ~~~~~~~~~f~~~---a~~~~~~~a~~~~~~----~-~~eekV~~l~---~MGf----~~~~a~~AL~~~~wd~~~A~e~ 197 (201)
T 3k9o_A 133 NQYKQNPEMFKQT---ARLWAHVYAGAPVSS----P-EYTKKIENLC---AMGF----DRNAVIVALSSKSWDVETATEL 197 (201)
T ss_dssp HHHHHCHHHHHHH---HHHHHHHHHCCCCCC----H-HHHHHHHHHH---TTTC----CHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHCHHHHHHH---HHHHHHHhccccccc----c-hhHHHHHHHH---HcCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 9999888888888 999999999853221 1 1233333333 5555 4688899999999999999988
Q ss_pred HHh
Q psy17486 156 LST 158 (172)
Q Consensus 156 Ls~ 158 (172)
|-.
T Consensus 198 L~~ 200 (201)
T 3k9o_A 198 LLS 200 (201)
T ss_dssp HHH
T ss_pred Hhc
Confidence 754
No 96
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=96.60 E-value=0.022 Score=45.66 Aligned_cols=124 Identities=31% Similarity=0.429 Sum_probs=84.3
Q ss_pred CCcEEEEcCCCCCCCC-C---ee--EEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHH
Q psy17486 2 VDTTVKFVTKIWHPNI-S---SV--KFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~p-P---~v--~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~ 75 (172)
-.|+|+|+++.|+.+. + .| ..+..-|.|..+- .+|-.-|.++..-....+|.++..+
T Consensus 122 ~PP~V~F~T~i~HPNV~~~~G~ICL~iL~~~WsP~~ti-----------------~~vL~sI~~ll~~pnp~~Pln~eaa 184 (253)
T 3e46_A 122 NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTL-----------------RTVLLSLQALLAAAEPDDPQDAVVA 184 (253)
T ss_dssp SCCEEEESSCCCBTTBCTTTCBBCCGGGTTCCCTTCCH-----------------HHHHHHHHHHHHSCCTTSCSCHHHH
T ss_pred CCCeeeecCCCccCCccCCCCeeecccccCCCCCCCCH-----------------HHHHHHHHHHhcCCCCCChhhHHHH
Confidence 4689999999987654 2 11 1123446665331 1233345566667788899999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhcCchhhHHHHHHHHHHhcCCCCCCCchHHHHHHHHHcCCChHHHHHH
Q psy17486 76 VVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVA 155 (172)
Q Consensus 76 ~aa~~~~~~~~~f~~~ar~~t~~~a~~~~~~~~~~~~~~~~~a~~w~~~~~~~~~~~~~~~~kv~~l~~~gf~~~~a~~a 155 (172)
.....-++.+..- ||+||++||+.... .| .++...+... .++. +.++.+..|...|+|.+.|+..
T Consensus 185 ~l~~~d~~~f~~~---ar~~t~~yA~~~~~----~~-~~~~~v~~l~---~mgf----~~~~~~~al~~~nWd~~~A~e~ 249 (253)
T 3e46_A 185 NQYKQNPEMFKQT---ARLWAHVYAGAPVS----SP-EYTKKIENLC---AAGF----DRNAVIVALSSKSWDVETATEL 249 (253)
T ss_dssp HHHHHCHHHHHHH---HHHHHHHHHCCSCC----CH-HHHHHHHHHH---HTTC----CHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHCHHHHHHH---HHHHHHHhcccccC----cc-hHHHHHHHHH---HcCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 9999888888888 99999999985322 11 1233333333 4454 3588899999999999999887
Q ss_pred HH
Q psy17486 156 LS 157 (172)
Q Consensus 156 Ls 157 (172)
|=
T Consensus 250 L~ 251 (253)
T 3e46_A 250 LL 251 (253)
T ss_dssp HH
T ss_pred Hh
Confidence 74
No 97
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=96.47 E-value=0.004 Score=36.93 Aligned_cols=38 Identities=21% Similarity=0.410 Sum_probs=31.9
Q ss_pred chHHHHHHHHHc-CCCh-HHHHHHHHhcCCChHHHHHHhh
Q psy17486 134 DFDSKIQRLTDM-GVMS-HDARVALSTYNWELERATEAIF 171 (172)
Q Consensus 134 ~~~~kv~~l~~~-gf~~-~~a~~aLs~~~W~~~~a~~~l~ 171 (172)
+.+.+|..++++ |.+. ..|+..|..++||++.|+...+
T Consensus 4 d~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~ 43 (45)
T 3e21_A 4 DREMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVI 43 (45)
T ss_dssp CHHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC-
T ss_pred cHHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHc
Confidence 358889999887 7675 9999999999999999987654
No 98
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=96.01 E-value=0.013 Score=34.36 Aligned_cols=36 Identities=19% Similarity=0.476 Sum_probs=30.8
Q ss_pred HHHHHHHHHc-CCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486 136 DSKIQRLTDM-GVMSHDARVALSTYNWELERATEAIF 171 (172)
Q Consensus 136 ~~kv~~l~~~-gf~~~~a~~aLs~~~W~~~~a~~~l~ 171 (172)
+.+|..++.. |-++..|+..|..++|+++.|+...+
T Consensus 6 ~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff 42 (46)
T 1v92_A 6 QDALREFVAVTGAEEDRARFFLESAGWDLQIALASFY 42 (46)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5677888765 77999999999999999999998765
No 99
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.53 E-value=0.026 Score=35.47 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=32.7
Q ss_pred chHHHHHHHHHc-CCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486 134 DFDSKIQRLTDM-GVMSHDARVALSTYNWELERATEAIF 171 (172)
Q Consensus 134 ~~~~kv~~l~~~-gf~~~~a~~aLs~~~W~~~~a~~~l~ 171 (172)
..+++|+.++.. |-++..|+..|..++||++.|+...+
T Consensus 14 ~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff 52 (62)
T 2dal_A 14 ALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFL 52 (62)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 457788888765 88899999999999999999998765
No 100
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=95.27 E-value=0.015 Score=35.27 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=34.5
Q ss_pred CCchHHHHHHHHHcCCChHHH--HHHHHhcCCChHHHHHHh
Q psy17486 132 NPDFDSKIQRLTDMGVMSHDA--RVALSTYNWELERATEAI 170 (172)
Q Consensus 132 ~~~~~~kv~~l~~~gf~~~~a--~~aLs~~~W~~~~a~~~l 170 (172)
++.....+.+|.+|||+.+.. ...|..++.|..+|++.|
T Consensus 7 D~rl~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~l 47 (52)
T 1q02_A 7 DPRLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTI 47 (52)
T ss_dssp CHHHHHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHh
Confidence 455788899999999999887 689999999999999876
No 101
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=95.09 E-value=0.058 Score=33.63 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=34.9
Q ss_pred chHHHHHHHHHc--CCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486 134 DFDSKIQRLTDM--GVMSHDARVALSTYNWELERATEAIF 171 (172)
Q Consensus 134 ~~~~kv~~l~~~--gf~~~~a~~aLs~~~W~~~~a~~~l~ 171 (172)
..+..++.|.+| +++...+..+|.+++++++.|++.|+
T Consensus 8 ~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL 47 (59)
T 1wgl_A 8 CSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLL 47 (59)
T ss_dssp SCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 468899999999 77889999999999999999999997
No 102
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.91 E-value=0.042 Score=35.12 Aligned_cols=38 Identities=24% Similarity=0.464 Sum_probs=32.3
Q ss_pred chHHHHHHHHHc-C-CChHHHHHHHHhcCCChHHHHHHhh
Q psy17486 134 DFDSKIQRLTDM-G-VMSHDARVALSTYNWELERATEAIF 171 (172)
Q Consensus 134 ~~~~kv~~l~~~-g-f~~~~a~~aLs~~~W~~~~a~~~l~ 171 (172)
+.+.+|+.++.. | -++..|+..|..++||++.|+...+
T Consensus 17 ~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff 56 (67)
T 2dam_A 17 EQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRL 56 (67)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 456788888876 5 5889999999999999999998765
No 103
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=94.70 E-value=0.076 Score=31.88 Aligned_cols=38 Identities=26% Similarity=0.368 Sum_probs=34.3
Q ss_pred chHHHHHHHHHc--CCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486 134 DFDSKIQRLTDM--GVMSHDARVALSTYNWELERATEAIF 171 (172)
Q Consensus 134 ~~~~kv~~l~~~--gf~~~~a~~aLs~~~W~~~~a~~~l~ 171 (172)
+.+.+++.|.+| ..+...+..+|+.+++|.+.|++.||
T Consensus 3 ~~e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL 42 (49)
T 1otr_A 3 DHESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLL 42 (49)
T ss_dssp SHHHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 357889999999 77889999999999999999999987
No 104
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=94.62 E-value=0.062 Score=41.98 Aligned_cols=122 Identities=22% Similarity=0.326 Sum_probs=64.2
Q ss_pred CCcEEEEcCCCCCCCC-C-e----eEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHH
Q psy17486 2 VDTTVKFVTKIWHPNI-S-S----VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~p-P-~----v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~ 75 (172)
..|+|+|+++.|+.+. + . +..+..-|.|..+- ..| -.-|.++..-....+|.++..+
T Consensus 65 ~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti--~~V---------------L~sI~sLL~~Pnp~~Pln~eaa 127 (215)
T 1tte_A 65 KPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITL--KSA---------------LISLQALLQSPEPNDPQDAEVA 127 (215)
T ss_dssp CCCEEEETTTCCCSSSCSSSSCCCSSTTTCCSCTTCCH--HHH---------------HHHHHHHHTSCCCSSCSCHHHH
T ss_pred CCCcccccCCCccCcCcCCCCEEECccCCCCCCCcCcH--HHH---------------HHHHHHHHhCCCCCCccCHHHH
Confidence 4689999999998665 2 1 12233446665431 122 2234455555667777787766
Q ss_pred HHHH----HHhhCHHHHHHHHHHHHHHHHHHHHHhhhcC---chhhHHHHHHHHHHhcCCCCCCCchHHHHHHHHHcCCC
Q psy17486 76 VVAK----QYKENPEMFTLTARHWTNVYAGVVAKQYKEN---PEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVM 148 (172)
Q Consensus 76 ~aa~----~~~~~~~~f~~~ar~~t~~~a~~~~~~~~~~---~~~~~~~a~~w~~~~~~~~~~~~~~~~kv~~l~~~gf~ 148 (172)
.... .|.+.-+.+ +++++..-.........+. +-.-.++.+.- .++. +.++.++.|..+|+|
T Consensus 128 ~~~~~d~~~f~~~ar~~---t~~yA~~~~~~~~~~~~~~~~~g~~~~~v~~~~----~mg~----~~~~~~~al~~~~~~ 196 (215)
T 1tte_A 128 QHYLRDRESFNKTAALW---TRLYASETSNGQKGNVEESDLYGIDHDLIDEFE----SQGF----EKDKIVEVLRRLGVK 196 (215)
T ss_dssp HHHHHCHHHHHHHHHHH---HHHSSCCCSCCSSCCCSCSSCCCCSHHHHHHHH----HHTC----CHHHHHHHHHHSCCS
T ss_pred HHHHHCHHHHHHHHHHH---HHHhccCCCcccccchhhhhhccccHHHHHHHH----HcCC----CHHHHHHHHHHcCCC
Confidence 6665 344444444 6666654321000000000 00012222221 3443 368899999999999
Q ss_pred hHH
Q psy17486 149 SHD 151 (172)
Q Consensus 149 ~~~ 151 (172)
+..
T Consensus 197 ~~~ 199 (215)
T 1tte_A 197 SLD 199 (215)
T ss_dssp SCC
T ss_pred ccc
Confidence 865
No 105
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=94.51 E-value=0.025 Score=44.28 Aligned_cols=122 Identities=24% Similarity=0.300 Sum_probs=56.8
Q ss_pred CCcEEEEcCCCCCCCC-C---ee--EEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhcCCCCCChHHH
Q psy17486 2 VDTTVKFVTKIWHPNI-S---SV--KFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75 (172)
Q Consensus 2 ~~~~i~F~p~~YP~~p-P---~v--~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~~p~~~~p~n~ 75 (172)
..|+|+|+++.|+.+. + .| ..+..-|.|..+- ..| -.-|.++..-....+|.++..+
T Consensus 85 ~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti--~~V---------------L~sI~sLL~~Pnp~dPln~eaa 147 (216)
T 2pwq_A 85 NPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTI--RTA---------------LLSIQALLSDPQPDDPQDAEVA 147 (216)
T ss_dssp SCCEEEESSCCCBTTBCTTTCBBCCHHHHHHCCTTCCH--HHH---------------HHHHHHHHHSCCTTSCSCHHHH
T ss_pred CCCcccccCCCcCCCCcCCCCEEEchhhcccCCCCCcH--HHH---------------HHHHHHHHhCCCCCCcccHHHH
Confidence 4689999999987654 2 11 1223447776431 122 2334556566778888999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhcCchhhHHHHHHHHHHhcCCCCCCCchHHHHHHHHHcCCChHHHHHH
Q psy17486 76 VVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVA 155 (172)
Q Consensus 76 ~aa~~~~~~~~~f~~~ar~~t~~~a~~~~~~~~~~~~~~~~~a~~w~~~~~~~~~~~~~~~~kv~~l~~~gf~~~~a~~a 155 (172)
.....-++.+..- ||+||++||...... ..+...+ +-..++. +..+.+..|...|++++.|+..
T Consensus 148 ~~~~~d~~~f~~~---ar~~t~~ya~~~~~~------~~~~~v~---~~~~mgf----~~~~~~~al~~~~~~~~~~~~~ 211 (216)
T 2pwq_A 148 KMYKENHALFVKT---ASVWTKTFATGPKEE------PREVIIK---KITEMGF----SEDQAKNALIKANWNETLALNT 211 (216)
T ss_dssp HHHHHCHHHHHHH---HHHHHHHHSCCC----------------------------------------------------
T ss_pred HHHHHCHHHHHHH---HHHHHHHhcCCCccc------chhhHHH---HHHHcCC----CHHHHHHHHHHcCCchHHHHHH
Confidence 9988888888878 999999999743321 0011111 1123443 3467788999999999998776
Q ss_pred H
Q psy17486 156 L 156 (172)
Q Consensus 156 L 156 (172)
|
T Consensus 212 l 212 (216)
T 2pwq_A 212 L 212 (216)
T ss_dssp -
T ss_pred H
Confidence 5
No 106
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.19 E-value=0.094 Score=33.36 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=30.2
Q ss_pred HHHHHHHHc-CCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486 137 SKIQRLTDM-GVMSHDARVALSTYNWELERATEAIF 171 (172)
Q Consensus 137 ~kv~~l~~~-gf~~~~a~~aLs~~~W~~~~a~~~l~ 171 (172)
.+|..++.. |-++..|...|..++|+++.|+..++
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff 54 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFF 54 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 567788765 77999999999999999999998765
No 107
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.61 E-value=0.2 Score=31.96 Aligned_cols=39 Identities=8% Similarity=0.202 Sum_probs=35.1
Q ss_pred CchHHHHHHHHHc--CCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486 133 PDFDSKIQRLTDM--GVMSHDARVALSTYNWELERATEAIF 171 (172)
Q Consensus 133 ~~~~~kv~~l~~~--gf~~~~a~~aLs~~~W~~~~a~~~l~ 171 (172)
.++.+.++.|.+| .++...+...|.+++++++.|++.||
T Consensus 16 ~~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL 56 (67)
T 2dhy_A 16 LEFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLL 56 (67)
T ss_dssp CCSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3578999999999 66778889999999999999999997
No 108
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=92.27 E-value=0.23 Score=31.43 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=31.1
Q ss_pred HHHHHHHHH-cCCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486 136 DSKIQRLTD-MGVMSHDARVALSTYNWELERATEAIF 171 (172)
Q Consensus 136 ~~kv~~l~~-~gf~~~~a~~aLs~~~W~~~~a~~~l~ 171 (172)
...|..|++ -|.....+..||...+||++.|+++|.
T Consensus 10 ~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr 46 (64)
T 2cp9_A 10 KELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLH 46 (64)
T ss_dssp CHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 466778865 488999999999999999999999984
No 109
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=88.98 E-value=0.31 Score=45.23 Aligned_cols=37 Identities=32% Similarity=0.428 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486 136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172 (172)
Q Consensus 136 ~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~ 172 (172)
.+.+..+.+|||++.+++.||...+.++++|++.|++
T Consensus 721 ~e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs 757 (854)
T 3ihp_A 721 EDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFS 757 (854)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhc
Confidence 6789999999999999999999999999999999874
No 110
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=85.29 E-value=0.91 Score=33.71 Aligned_cols=36 Identities=22% Similarity=0.215 Sum_probs=31.1
Q ss_pred hHHHHHHHHHcC-CChHHHHHHHHhcCCChHHHHHHh
Q psy17486 135 FDSKIQRLTDMG-VMSHDARVALSTYNWELERATEAI 170 (172)
Q Consensus 135 ~~~kv~~l~~~g-f~~~~a~~aLs~~~W~~~~a~~~l 170 (172)
..+|+..|.+.| |++++++.||..++.|++.|+-.|
T Consensus 102 R~~K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eL 138 (162)
T 4dbg_B 102 RRRKVQELQSLGFGPEEGSLQALFQHGGDVSRALTEL 138 (162)
T ss_dssp HHHHHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHH
Confidence 467888899999 566899999999999999998655
No 111
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=85.15 E-value=1.4 Score=30.21 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=29.9
Q ss_pred HHHHHHH-HHcCCChHHHHHHHHhcCCChHHHHHHh
Q psy17486 136 DSKIQRL-TDMGVMSHDARVALSTYNWELERATEAI 170 (172)
Q Consensus 136 ~~kv~~l-~~~gf~~~~a~~aLs~~~W~~~~a~~~l 170 (172)
.+.|+.+ ...|.++..|+.||..+++|+=.|+-.|
T Consensus 66 ~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 66 EDDIELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 5567666 4679999999999999999999998765
No 112
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.83 E-value=0.45 Score=33.38 Aligned_cols=20 Identities=0% Similarity=0.169 Sum_probs=16.4
Q ss_pred cEEEEcCCCCCCCCCeeEEec
Q psy17486 4 TTVKFVTKIWHPNISSVKFLT 24 (172)
Q Consensus 4 ~~i~F~p~~YP~~pP~v~F~t 24 (172)
..|.| |++||..||.+...+
T Consensus 59 L~v~~-p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 59 LKFTY-SEKYPDEAPLYEIFS 78 (128)
T ss_dssp EEEEC-CSSTTTSCCEEEEEE
T ss_pred EEEEe-CCCCCCCCceEEEEc
Confidence 45777 999999999987654
No 113
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=84.65 E-value=0.49 Score=33.17 Aligned_cols=21 Identities=0% Similarity=0.121 Sum_probs=17.4
Q ss_pred cEEEEcCCCCCCCCCeeEEecc
Q psy17486 4 TTVKFVTKIWHPNISSVKFLTK 25 (172)
Q Consensus 4 ~~i~F~p~~YP~~pP~v~F~t~ 25 (172)
..|.| |++||..+|.+...+.
T Consensus 63 L~~~~-p~~YP~~~P~i~~~~~ 83 (128)
T 2day_A 63 LVLQV-PAEYPHEVPQISIRNP 83 (128)
T ss_dssp EEEEE-CSSTTSSCCEEEEEEE
T ss_pred EEEEc-CCCCCCCCCCeEEEcC
Confidence 45777 9999999999987763
No 114
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=84.04 E-value=2.4 Score=26.65 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=29.4
Q ss_pred chHHHHHHHH-HcCCChHHHHHHHHhcCCChHHHH
Q psy17486 134 DFDSKIQRLT-DMGVMSHDARVALSTYNWELERAT 167 (172)
Q Consensus 134 ~~~~kv~~l~-~~gf~~~~a~~aLs~~~W~~~~a~ 167 (172)
+++..+..++ ..|-+...|++-|..++||+.+|+
T Consensus 16 dmdavls~fvrstgaepgLaRDlleGKnWDl~AAL 50 (73)
T 2l2d_A 16 DMDAVLSDFVRSTGAEPGLARDLLEGKNWDLTAAL 50 (73)
T ss_dssp CHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCCcchhHHhhccCCccHhHHh
Confidence 4677777775 558999999999999999999998
No 115
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=83.95 E-value=0.56 Score=33.33 Aligned_cols=20 Identities=10% Similarity=0.235 Sum_probs=16.7
Q ss_pred cEEEEcCCCCCCCCCeeEEec
Q psy17486 4 TTVKFVTKIWHPNISSVKFLT 24 (172)
Q Consensus 4 ~~i~F~p~~YP~~pP~v~F~t 24 (172)
..|.| |++||..||.+.+.+
T Consensus 66 L~~~~-p~~YP~~~P~i~l~~ 85 (138)
T 2yz0_A 66 LHFAM-TPMYPYTAPEIEFKN 85 (138)
T ss_dssp EEEEC-CSSTTSSCCEEEEEC
T ss_pred EEEEC-CCCCCCCCCeEEEec
Confidence 45677 999999999998765
No 116
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=83.68 E-value=0.64 Score=34.17 Aligned_cols=25 Identities=68% Similarity=1.169 Sum_probs=20.2
Q ss_pred HHhhhcCchhhHHHHHHHHHHhcCC
Q psy17486 104 AKQYKENPEMFTLTARHWTNVYAGG 128 (172)
Q Consensus 104 ~~~~~~~~~~~~~~a~~w~~~~~~~ 128 (172)
+..++.++..|.++||+||++||++
T Consensus 135 a~~~~~~~~~f~~~a~~~~~~~a~~ 159 (159)
T 2bep_A 135 ANQYKQNPEMFKQTARLWAHVYAGA 159 (159)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHCHHHHHHHHHHHHHHhhcC
Confidence 4456667778899999999999975
No 117
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=83.49 E-value=2.7 Score=25.86 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=28.9
Q ss_pred hHHHHHHHH-HcCCChHHHHHHHHhcCCChHHHHHHh
Q psy17486 135 FDSKIQRLT-DMGVMSHDARVALSTYNWELERATEAI 170 (172)
Q Consensus 135 ~~~kv~~l~-~~gf~~~~a~~aLs~~~W~~~~a~~~l 170 (172)
-.+.|..+. .-|.+..=+...|...+||.+.|+..+
T Consensus 7 q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F 43 (59)
T 1oai_A 7 QQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAF 43 (59)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 355566664 448899999999999999999999765
No 118
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=82.41 E-value=0.78 Score=33.40 Aligned_cols=24 Identities=42% Similarity=0.674 Sum_probs=20.2
Q ss_pred HHhhhcCchhhHHHHHHHHHHhcC
Q psy17486 104 AKQYKENPEMFTLTARHWTNVYAG 127 (172)
Q Consensus 104 ~~~~~~~~~~~~~~a~~w~~~~~~ 127 (172)
+..+++++..|.++||+||++||+
T Consensus 127 a~~~~~d~~~f~~~ar~~~~~ya~ 150 (151)
T 4gpr_A 127 ANVLRANKKQFEDTAREWTRMYAR 150 (151)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCHHHHHHHHHHHHHHhcC
Confidence 455677788889999999999997
No 119
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=81.35 E-value=2.4 Score=25.94 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=28.5
Q ss_pred hHHHHHHHH-HcCCChHHHHHHHHhcCCChHHHHHHh
Q psy17486 135 FDSKIQRLT-DMGVMSHDARVALSTYNWELERATEAI 170 (172)
Q Consensus 135 ~~~kv~~l~-~~gf~~~~a~~aLs~~~W~~~~a~~~l 170 (172)
-.+.|..+. .-|.+.+=+...|+..+||.+.|+..+
T Consensus 6 q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F 42 (57)
T 2jp7_A 6 QLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGF 42 (57)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 345566664 458899999999999999999998764
No 120
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=80.78 E-value=3.1 Score=30.76 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=20.1
Q ss_pred HhhhcCchhhHHHHHHHHHHhcCCCCCCCchHHHHHH
Q psy17486 105 KQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQR 141 (172)
Q Consensus 105 ~~~~~~~~~~~~~a~~w~~~~~~~~~~~~~~~~kv~~ 141 (172)
..+..++..|.+.||+||++||+.... .+.+.+++.
T Consensus 132 ~~~~~~~~~y~~~~r~~~~~~a~~~~~-~~~~~~~~~ 167 (169)
T 1yh2_A 132 SEFKYNKPAFLKNARQWTEKHARQKQK-ADEEEMLDN 167 (169)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHSCCC------------
T ss_pred HHHHhhHHHHHHHHHHHHHHHcccccc-CCHHHHhhc
Confidence 345556677799999999999997532 234444443
No 121
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=80.60 E-value=1 Score=32.69 Aligned_cols=24 Identities=42% Similarity=0.721 Sum_probs=19.9
Q ss_pred HHhhhcCchhhHHHHHHHHHHhcC
Q psy17486 104 AKQYKENPEMFTLTARHWTNVYAG 127 (172)
Q Consensus 104 ~~~~~~~~~~~~~~a~~w~~~~~~ 127 (172)
+..++.++..|.+.||+||++||+
T Consensus 126 a~~~~~d~~~f~~~a~~~~~~~a~ 149 (149)
T 1fxt_A 126 AQHYLRDRESFNKTAALWTRLYAS 149 (149)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHCC
T ss_pred HHHHHHCHHHHHHHHHHHHHHhcC
Confidence 445667788889999999999985
No 122
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=80.60 E-value=4.8 Score=29.20 Aligned_cols=21 Identities=10% Similarity=-0.089 Sum_probs=17.2
Q ss_pred CcEEEEcCCCCCCCCCeeEEec
Q psy17486 3 DTTVKFVTKIWHPNISSVKFLT 24 (172)
Q Consensus 3 ~~~i~F~p~~YP~~pP~v~F~t 24 (172)
...|.| |.+||..+|.+...+
T Consensus 78 ~L~v~l-P~~YP~~~P~i~l~~ 98 (154)
T 2daw_A 78 DLQVTM-PHSYPYLALQLFGRS 98 (154)
T ss_dssp EEEEEE-CSSTTSSCCEEEEEC
T ss_pred EEEEEc-CCCCCCCCCcEEEEe
Confidence 456778 999999999998665
No 123
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=80.58 E-value=0.78 Score=33.54 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=18.5
Q ss_pred hhhcCchhhHHHHHHHHHHhcCCC
Q psy17486 106 QYKENPEMFTLTARHWTNVYAGGP 129 (172)
Q Consensus 106 ~~~~~~~~~~~~a~~w~~~~~~~~ 129 (172)
.++.++..|.+.||+||++||+++
T Consensus 130 ~~~~d~~~f~~~ar~~~~~~a~~~ 153 (154)
T 2c2v_B 130 QWKTNEAQAIETARAWTRLYAMNN 153 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHCHHHHHHHHHHHHHHhcCCC
Confidence 344455567899999999999874
No 124
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=80.06 E-value=1.3 Score=26.90 Aligned_cols=38 Identities=8% Similarity=0.075 Sum_probs=26.8
Q ss_pred hHHHHHHHHHc--CCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486 135 FDSKIQRLTDM--GVMSHDARVALSTYNWELERATEAIFT 172 (172)
Q Consensus 135 ~~~kv~~l~~~--gf~~~~a~~aLs~~~W~~~~a~~~l~~ 172 (172)
..+.++.|.+| ++|.+-....|..++++.+.|++.||.
T Consensus 12 ~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 12 RKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 35667777777 778888899999999999999998873
No 125
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=79.20 E-value=0.65 Score=32.88 Aligned_cols=20 Identities=10% Similarity=0.185 Sum_probs=16.1
Q ss_pred cEEEEcCCCCCCCCCeeEEec
Q psy17486 4 TTVKFVTKIWHPNISSVKFLT 24 (172)
Q Consensus 4 ~~i~F~p~~YP~~pP~v~F~t 24 (172)
..|.| |++||..||.+.+..
T Consensus 67 L~v~~-p~~YP~~~P~i~l~~ 86 (137)
T 1ukx_A 67 LRVKC-PPTYPDVVPEIDLKN 86 (137)
T ss_dssp EEECC-CTTTTSSCCCCEEEE
T ss_pred EEEEC-CCCCCCCCCcEEEec
Confidence 45667 999999999988753
No 126
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=78.61 E-value=1.2 Score=32.21 Aligned_cols=25 Identities=28% Similarity=0.639 Sum_probs=20.1
Q ss_pred HHhhhcCchhhHHHHHHHHHHhcCC
Q psy17486 104 AKQYKENPEMFTLTARHWTNVYAGG 128 (172)
Q Consensus 104 ~~~~~~~~~~~~~~a~~w~~~~~~~ 128 (172)
+..++.++..|.+.||+|+++||++
T Consensus 124 a~~~~~~~~~f~~~~~~~~~~~a~~ 148 (149)
T 2r0j_A 124 AEHFKQDKNDAEHVARQWNKIYANN 148 (149)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHCHHHHHHHHHHHHHHHccC
Confidence 3455667777899999999999986
No 127
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.41 E-value=0.79 Score=32.13 Aligned_cols=19 Identities=0% Similarity=0.062 Sum_probs=15.2
Q ss_pred cEEEEcCCCCCCCCCeeEEe
Q psy17486 4 TTVKFVTKIWHPNISSVKFL 23 (172)
Q Consensus 4 ~~i~F~p~~YP~~pP~v~F~ 23 (172)
..|.| |++||..||.+...
T Consensus 60 L~~~~-p~~YP~~~P~i~l~ 78 (128)
T 2ebk_A 60 LVFHL-PVNYPSCLPGISIN 78 (128)
T ss_dssp EEEEE-CSSTTSSCCCCCCC
T ss_pred EEEEC-CCCCCCCCCeEEEE
Confidence 45777 99999999988654
No 128
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=77.11 E-value=4.4 Score=28.05 Aligned_cols=83 Identities=14% Similarity=-0.009 Sum_probs=26.9
Q ss_pred CCCCCChHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhcCchhhHHHHHHHHHHhcCCCCCCCchHHHHHHHHHc
Q psy17486 66 AAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDM 145 (172)
Q Consensus 66 ~p~~~~p~n~~aa~~~~~~~~~f~~~ar~~t~~~a~~~~~~~~~~~~~~~~~a~~w~~~~~~~~~~~~~~~~kv~~l~~~ 145 (172)
.-.|.|.+.+..+..-......- ||.||..||+.....+.+.. .-.++.+. -.++.. +.+.-++.|.+.
T Consensus 23 ~~~PQDA~VA~qy~~~~~~f~~T---Ar~WT~~~a~~~~~~~~e~~-~~~qL~qL----~eMGF~---d~~~ni~AL~~t 91 (108)
T 2cwb_A 23 TTEAVDAATAEKVFKQYANDNGV---DGEWTYDDATKTFTVTEGSQ-WQPQLQQL----RDMGIQ---DDELSLRALQAT 91 (108)
T ss_dssp -------------------------------------------CCT-THHHHHHH----HTTTCC---CHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHhchhccccc---cccccccCcCCCCCCCcccc-hHHHHHHH----HHcCCC---CHHHHHHHHHHh
Confidence 34566777777777666666666 89999888865554432211 11223222 245531 346889999999
Q ss_pred CCChHHHHHHHHhc
Q psy17486 146 GVMSHDARVALSTY 159 (172)
Q Consensus 146 gf~~~~a~~aLs~~ 159 (172)
|.|.+.|+..|-..
T Consensus 92 ~Gdve~AVe~L~~~ 105 (108)
T 2cwb_A 92 GGDIQAALELIFAG 105 (108)
T ss_dssp TSCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhc
Confidence 99999999988654
No 129
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=75.59 E-value=1.5 Score=33.34 Aligned_cols=24 Identities=42% Similarity=0.639 Sum_probs=19.7
Q ss_pred HHhhhcCchhhHHHHHHHHHHhcC
Q psy17486 104 AKQYKENPEMFTLTARHWTNVYAG 127 (172)
Q Consensus 104 ~~~~~~~~~~~~~~a~~w~~~~~~ 127 (172)
+..++.++..|.++||+||++||+
T Consensus 169 a~l~~~d~~~f~~~ar~~t~~ya~ 192 (193)
T 2f4z_A 169 AKMMIENHPLFVQTAKLWTETFAK 192 (193)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCHHHHHHHHHHHHHHHcc
Confidence 445666777889999999999996
No 130
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=75.55 E-value=1.2 Score=32.49 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=21.0
Q ss_pred HHhhhcCchhhHHHHHHHHHHhcCCC
Q psy17486 104 AKQYKENPEMFTLTARHWTNVYAGGP 129 (172)
Q Consensus 104 ~~~~~~~~~~~~~~a~~w~~~~~~~~ 129 (172)
+..++.++..|.+.||+|+++||+.+
T Consensus 128 a~~~~~~~~~f~~~~r~~~~~~a~~~ 153 (155)
T 1jat_A 128 AEDWIKNEQGAKAKAREWTKLYAKKK 153 (155)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHSEEC
T ss_pred HHHHHHCHHHHHHHHHHHHHHhcccC
Confidence 44556677788999999999999865
No 131
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=75.26 E-value=1.4 Score=31.86 Aligned_cols=20 Identities=0% Similarity=0.019 Sum_probs=16.5
Q ss_pred cEEEEcCCCCCCCCCeeEEec
Q psy17486 4 TTVKFVTKIWHPNISSVKFLT 24 (172)
Q Consensus 4 ~~i~F~p~~YP~~pP~v~F~t 24 (172)
..|.+ |.+||..||.+....
T Consensus 77 L~v~l-P~~YP~~~P~i~l~~ 96 (152)
T 2dax_A 77 LACIL-PFKYPAVLPEITVRS 96 (152)
T ss_dssp EEEEE-CSSTTSSCCCCEEEC
T ss_pred EEEEC-CCCCCCCCCeEEEEc
Confidence 46777 999999999987665
No 132
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=73.13 E-value=1.9 Score=31.56 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=18.4
Q ss_pred HHhhhcCchhhHHHHHHHHHHhc
Q psy17486 104 AKQYKENPEMFTLTARHWTNVYA 126 (172)
Q Consensus 104 ~~~~~~~~~~~~~~a~~w~~~~~ 126 (172)
+..++.++..|.+.||+||++||
T Consensus 136 a~~~~~d~~~f~~~a~~~t~~~A 158 (158)
T 1zdn_A 136 GRLLLENYEEYAARARLLTEIHG 158 (158)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCHHHHHHHHHHHHHHhC
Confidence 34556677788999999999997
No 133
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=72.18 E-value=1.8 Score=31.51 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=20.3
Q ss_pred HHhhhcCchhhHHHHHHHHHHhcCCC
Q psy17486 104 AKQYKENPEMFTLTARHWTNVYAGGP 129 (172)
Q Consensus 104 ~~~~~~~~~~~~~~a~~w~~~~~~~~ 129 (172)
+..++.++..|.+.||+|+++||+..
T Consensus 128 a~~~~~~~~~y~~~~r~~~~~~a~~~ 153 (155)
T 1wzv_A 128 ADLLTQNPELFRKNAEEFTLRFGVDR 153 (155)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHCEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 34455667778999999999999864
No 134
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=71.61 E-value=1.5 Score=31.86 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=18.7
Q ss_pred HHhhhcCchhhHHHHHHHHHHhcCCC
Q psy17486 104 AKQYKENPEMFTLTARHWTNVYAGGP 129 (172)
Q Consensus 104 ~~~~~~~~~~~~~~a~~w~~~~~~~~ 129 (172)
+..+..++..|.++||+|+++||+..
T Consensus 126 a~~~~~~~~~f~~~~~~~~~~~a~~~ 151 (154)
T 1c4z_D 126 AEEYSKDRKKFCKNAEEFTKKYGEKR 151 (154)
T ss_dssp HHHHHTCSSTTHHHHHHHHTTC----
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcccC
Confidence 44567788889999999999999864
No 135
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=71.49 E-value=2.3 Score=31.36 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=18.3
Q ss_pred HhhhcCchhhHHHHHHHHHHhcC
Q psy17486 105 KQYKENPEMFTLTARHWTNVYAG 127 (172)
Q Consensus 105 ~~~~~~~~~~~~~a~~w~~~~~~ 127 (172)
..++.++..|.+.||+|+++||+
T Consensus 145 ~~~~~~~~~f~~~~r~~~~~~A~ 167 (167)
T 3fn1_B 145 EHHLRDKEDFRNKVDDYIKRYAR 167 (167)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHCHHHHHHHHHHHHHHhcC
Confidence 34456677789999999999985
No 136
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=71.24 E-value=8.5 Score=24.61 Aligned_cols=39 Identities=21% Similarity=0.344 Sum_probs=33.7
Q ss_pred CchHHHHHHHHHc--CCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486 133 PDFDSKIQRLTDM--GVMSHDARVALSTYNWELERATEAIF 171 (172)
Q Consensus 133 ~~~~~kv~~l~~~--gf~~~~a~~aLs~~~W~~~~a~~~l~ 171 (172)
.+++..|..+.++ .+...-+...|..++-|+|.+++.||
T Consensus 11 ~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LL 51 (71)
T 2di0_A 11 VELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNIL 51 (71)
T ss_dssp HHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4578888888887 67778899999999999999999887
No 137
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=70.81 E-value=2.4 Score=30.61 Aligned_cols=23 Identities=39% Similarity=0.689 Sum_probs=18.4
Q ss_pred HhhhcCchhhHHHHHHHHHHhcC
Q psy17486 105 KQYKENPEMFTLTARHWTNVYAG 127 (172)
Q Consensus 105 ~~~~~~~~~~~~~a~~w~~~~~~ 127 (172)
..++.++..|.+.||+|+++||+
T Consensus 128 ~~~~~~~~~f~~~~~~~~~~~a~ 150 (150)
T 1z2u_A 128 RIYKTDRERYNQLAREWTQKYAM 150 (150)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 44556677789999999999985
No 138
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=69.03 E-value=2.6 Score=31.11 Aligned_cols=23 Identities=39% Similarity=0.694 Sum_probs=18.4
Q ss_pred HhhhcCchhhHHHHHHHHHHhcC
Q psy17486 105 KQYKENPEMFTLTARHWTNVYAG 127 (172)
Q Consensus 105 ~~~~~~~~~~~~~a~~w~~~~~~ 127 (172)
..++.++..|.+.||+||++||+
T Consensus 143 ~~~~~d~~~y~~~ar~~~~~~a~ 165 (165)
T 2c4o_A 143 RIYKTDREKYNRIAREWTQKYAM 165 (165)
T ss_dssp HHHHHCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 44556777789999999999985
No 139
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=68.93 E-value=7.2 Score=23.12 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=23.9
Q ss_pred CCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486 146 GVMSHDARVALSTYNWELERATEAIFT 172 (172)
Q Consensus 146 gf~~~~a~~aLs~~~W~~~~a~~~l~~ 172 (172)
|.+++-.+.-|..-+-|+..|++.|||
T Consensus 22 gksR~vIirELqrTnLdVN~AvNNlLs 48 (53)
T 2qho_B 22 GKSRSVIIRELQRTNLDVNLAVNNLLS 48 (53)
T ss_dssp TCCHHHHHHHHHHTTTCHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHhCccHHHHHHHHhc
Confidence 778888899999999999999999886
No 140
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=68.35 E-value=2.8 Score=31.83 Aligned_cols=24 Identities=42% Similarity=0.589 Sum_probs=19.1
Q ss_pred HHhhhcCchhhHHHHHHHHHHhcC
Q psy17486 104 AKQYKENPEMFTLTARHWTNVYAG 127 (172)
Q Consensus 104 ~~~~~~~~~~~~~~a~~w~~~~~~ 127 (172)
+..+..++..|.++||+|+++||+
T Consensus 171 a~l~~~d~~~f~~~ar~~t~~ya~ 194 (194)
T 3bzh_A 171 ATQYMTNRAEHDRMARQWTKRYAT 194 (194)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCHHHHHHHHHHHHHHhhC
Confidence 345566777789999999999985
No 141
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=67.91 E-value=2.8 Score=30.70 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=18.6
Q ss_pred HhhhcCchhhHHHHHHHHHHhcCC
Q psy17486 105 KQYKENPEMFTLTARHWTNVYAGG 128 (172)
Q Consensus 105 ~~~~~~~~~~~~~a~~w~~~~~~~ 128 (172)
..++.++..|.+.||+|+++||+.
T Consensus 138 ~~~~~~~~~y~~~~~~~~~~~a~~ 161 (161)
T 2grr_A 138 TIYCQNRVEYEKRVRAQAKKFAPS 161 (161)
T ss_dssp HHHHHCHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHCHHHHHHHHHHHHHHHhcC
Confidence 445566777899999999999863
No 142
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=67.89 E-value=2.9 Score=30.46 Aligned_cols=23 Identities=9% Similarity=0.202 Sum_probs=18.6
Q ss_pred HhhhcCchhhHHHHHHHHHHhcC
Q psy17486 105 KQYKENPEMFTLTARHWTNVYAG 127 (172)
Q Consensus 105 ~~~~~~~~~~~~~a~~w~~~~~~ 127 (172)
..++.++..|.+.||+|+++||+
T Consensus 135 ~~~~~~~~~y~~~~~~~~~~~a~ 157 (157)
T 2gjd_A 135 RSFSRNKAEYDKKVLLQAKQYSK 157 (157)
T ss_dssp HHHHHCHHHHHHHHHHHHHHTBC
T ss_pred HHHHHCHHHHHHHHHHHHHHhcC
Confidence 44566777789999999999985
No 143
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=66.88 E-value=1.7 Score=32.29 Aligned_cols=29 Identities=7% Similarity=0.092 Sum_probs=21.7
Q ss_pred HHhhhcCchhhHHHHHHHHHHhcCCCCCC
Q psy17486 104 AKQYKENPEMFTLTARHWTNVYAGGPSKN 132 (172)
Q Consensus 104 ~~~~~~~~~~~~~~a~~w~~~~~~~~~~~ 132 (172)
+..++.++..|.+.||+|+++|+.....+
T Consensus 127 a~~~~~d~~~y~~~~r~~~~~~a~~~~~~ 155 (169)
T 1ayz_A 127 ATLFKDHKSQYVKRVKETVEKSWEDDMDD 155 (169)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHCHHHHHHHHHHHHHHHcCCCccC
Confidence 34455667778999999999999876543
No 144
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=65.61 E-value=3.4 Score=30.53 Aligned_cols=23 Identities=39% Similarity=0.705 Sum_probs=18.1
Q ss_pred HHhhhcCchhhHHHHHHHHHHhc
Q psy17486 104 AKQYKENPEMFTLTARHWTNVYA 126 (172)
Q Consensus 104 ~~~~~~~~~~~~~~a~~w~~~~~ 126 (172)
+..++.++..|.+.||+|+++||
T Consensus 144 a~l~~~d~~~f~~~ar~~~~~~A 166 (166)
T 2ayv_A 144 AHLYKSDRMRYDQTAREWSQKYA 166 (166)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCHHHHHHHHHHHHHHhC
Confidence 34556677778999999999997
No 145
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=64.58 E-value=3.6 Score=30.30 Aligned_cols=24 Identities=13% Similarity=0.093 Sum_probs=19.0
Q ss_pred HHhhhcCchhhHHHHHHHHHHhcC
Q psy17486 104 AKQYKENPEMFTLTARHWTNVYAG 127 (172)
Q Consensus 104 ~~~~~~~~~~~~~~a~~w~~~~~~ 127 (172)
+..++.++..|.+.||+|+++||.
T Consensus 140 a~~~~~d~~~y~~~~r~~~~~ya~ 163 (163)
T 3rcz_B 140 YTMFKKDKVEYEKRVRAQARENAP 163 (163)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCHHHHHHHHHHHHHHhCc
Confidence 345566777889999999999973
No 146
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=61.70 E-value=4 Score=29.62 Aligned_cols=25 Identities=8% Similarity=0.325 Sum_probs=20.0
Q ss_pred HhhhcCchhhHHHHHHHHHHhcCCC
Q psy17486 105 KQYKENPEMFTLTARHWTNVYAGGP 129 (172)
Q Consensus 105 ~~~~~~~~~~~~~a~~w~~~~~~~~ 129 (172)
..++.++..|.+.||+|+++||+..
T Consensus 125 ~~~~~d~~~y~~~v~~~~~~~a~~~ 149 (152)
T 2onu_A 125 SLLMKDKNIYEEKVKEYVKLYASKD 149 (152)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHSCGG
T ss_pred HHHHHCHHHHHHHHHHHHHHhccCc
Confidence 3455667778999999999999874
No 147
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=61.34 E-value=4.8 Score=29.05 Aligned_cols=24 Identities=13% Similarity=0.155 Sum_probs=18.5
Q ss_pred HhhhcCchhhHHHHHHHHHHhcCC
Q psy17486 105 KQYKENPEMFTLTARHWTNVYAGG 128 (172)
Q Consensus 105 ~~~~~~~~~~~~~a~~w~~~~~~~ 128 (172)
..++.++..|.+.||+|+++||+.
T Consensus 128 ~~~~~~~~~y~~~~~~~~~~~a~~ 151 (152)
T 2aak_A 128 RMYSESKREYNRRVRDVVEQSWTA 151 (152)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHCHHHHHHHHHHHHHHHccc
Confidence 345566777899999999999875
No 148
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=61.33 E-value=4.7 Score=30.22 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=20.0
Q ss_pred HhhhcCchhhHHHHHHHHHHhcCCC
Q psy17486 105 KQYKENPEMFTLTARHWTNVYAGGP 129 (172)
Q Consensus 105 ~~~~~~~~~~~~~a~~w~~~~~~~~ 129 (172)
..++.++..|.+.||+|+++||+..
T Consensus 147 ~~~~~d~~~y~~~vr~~~~~~a~~~ 171 (179)
T 2z5d_A 147 AMYLHRPEEYKQKIKEYIQKYATEE 171 (179)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHSSHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHcccc
Confidence 4455677778999999999999853
No 149
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=59.08 E-value=16 Score=27.57 Aligned_cols=46 Identities=13% Similarity=0.196 Sum_probs=31.9
Q ss_pred cEEEEcCCCCCCCCCeeEEecccccccccCCCCceecccCCCCcCCcCCHHHHHHHHHHhhc
Q psy17486 4 TTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMA 65 (172)
Q Consensus 4 ~~i~F~p~~YP~~pP~v~F~t~i~HPnV~~~~G~icl~~l~~~W~p~~~l~~vL~~i~~ll~ 65 (172)
.+|++ +.+||.+||.+.-.-++ |. .-.|+|..+|.+++...+..+.
T Consensus 42 l~v~l-~~~yp~~~P~~~~DlP~--~~-------------~~~w~~~ssL~~v~~qF~~~Le 87 (186)
T 3zqs_A 42 ITLKL-KAKYPAESPDYFVDFPV--PF-------------CASWTPQSSLISIYSQFLAAIE 87 (186)
T ss_dssp EEEEC-CTTTTTSCCEEECCCSS--CC-------------CCCCCTTCCHHHHHHHHHHHHH
T ss_pred EEEEE-CCCCCCCCCeeEEcCCC--Cc-------------ccccCCCccHHHHHHHHHHHHH
Confidence 35777 89999999976543322 11 1269999999988887765544
No 150
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=53.42 E-value=7.7 Score=28.71 Aligned_cols=24 Identities=13% Similarity=0.023 Sum_probs=19.1
Q ss_pred HhhhcCchhhHHHHHHHHHHhcCC
Q psy17486 105 KQYKENPEMFTLTARHWTNVYAGG 128 (172)
Q Consensus 105 ~~~~~~~~~~~~~a~~w~~~~~~~ 128 (172)
..++.++..|.+.||+|+++||+.
T Consensus 134 ~~~~~d~~~y~~~vr~~~~~~a~~ 157 (171)
T 1yf9_A 134 HLLHADRVGFDALLREHVSTHATP 157 (171)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHCHHHHHHHHHHHHHHHcCh
Confidence 344556677899999999999985
No 151
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=50.07 E-value=9.7 Score=27.71 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=18.9
Q ss_pred HHhhhcCchhhHHHHHHHHHHhcC
Q psy17486 104 AKQYKENPEMFTLTARHWTNVYAG 127 (172)
Q Consensus 104 ~~~~~~~~~~~~~~a~~w~~~~~~ 127 (172)
+..+++++..|.+.||+|++++++
T Consensus 140 a~~~~~~~~~f~~~~~~~~~~s~~ 163 (164)
T 3h8k_A 140 SKMWRDDREQFYKIAKQIVQKSLG 163 (164)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCHHHHHHHHHHHHHHhhc
Confidence 345667777889999999998875
No 152
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=49.77 E-value=29 Score=23.74 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=27.5
Q ss_pred HHHHHcCCChHHHHHHHHhcCCChHHHHHHhhC
Q psy17486 140 QRLTDMGVMSHDARVALSTYNWELERATEAIFT 172 (172)
Q Consensus 140 ~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~~ 172 (172)
..|.+-..|-..|..||=+.+.++++|..+|++
T Consensus 19 ~lMeef~~DL~sVTqAlLK~SGel~at~~fL~~ 51 (111)
T 3k6g_A 19 QLMEKFNLDLSTVTQAFLKNSGELEATSAFLAS 51 (111)
T ss_dssp HHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHccccHHHHHHHHhC
Confidence 344566778888999999999999999999873
No 153
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=48.15 E-value=11 Score=31.72 Aligned_cols=26 Identities=42% Similarity=0.707 Sum_probs=21.4
Q ss_pred HhhhcCchhhHHHHHHHHHHhcCCCC
Q psy17486 105 KQYKENPEMFTLTARHWTNVYAGGPS 130 (172)
Q Consensus 105 ~~~~~~~~~~~~~a~~w~~~~~~~~~ 130 (172)
..++.++..+.++||+||++||+.+.
T Consensus 127 ~~~~~d~~~y~~~~~~~~~~~a~~~v 152 (399)
T 4ddg_A 127 RIYKTDREKYNRIAREWTQKYAMGGS 152 (399)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHCHHHHHHHHHHHHHHhhcccc
Confidence 45566777889999999999999863
No 154
>2gpi_A Conserved hypothetical protein; transcriptional regulation of the shikimate pathway, structu genomics, joint center for structural genomics; HET: MSE; 1.60A {Shewanella loihica} SCOP: d.354.1.1
Probab=47.51 E-value=9.4 Score=25.53 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=21.4
Q ss_pred ChHHHHHHHHhcCCChHHHHHHhh
Q psy17486 148 MSHDARVALSTYNWELERATEAIF 171 (172)
Q Consensus 148 ~~~~a~~aLs~~~W~~~~a~~~l~ 171 (172)
.++.++.++..+-|++++..|.|+
T Consensus 51 ~~~~~l~~F~~~R~diEe~Ae~lI 74 (91)
T 2gpi_A 51 NSEQALSLFEQFRFDIEEQAEKLI 74 (91)
T ss_dssp SHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcchhHHHHHHHHH
Confidence 667889999999999999999886
No 155
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=46.94 E-value=22 Score=32.89 Aligned_cols=36 Identities=25% Similarity=0.228 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhcCC-ChHHHHHHhh
Q psy17486 136 DSKIQRLTDMGVMSHDARVALSTYNW-ELERATEAIF 171 (172)
Q Consensus 136 ~~kv~~l~~~gf~~~~a~~aLs~~~W-~~~~a~~~l~ 171 (172)
...++.|.+|||++.....||...+. +++.|++.|+
T Consensus 653 ~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~ 689 (854)
T 3ihp_A 653 ESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVM 689 (854)
T ss_dssp CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHh
Confidence 45789999999999999888887755 5888888775
No 156
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=45.40 E-value=25 Score=21.53 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=20.4
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhc
Q psy17486 135 FDSKIQRLTDMGVMSHDARVALSTY 159 (172)
Q Consensus 135 ~~~kv~~l~~~gf~~~~a~~aLs~~ 159 (172)
.++.++.|+.+||.+.+|..+++.-
T Consensus 17 ~~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 17 AEEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4678999999999998887766653
No 157
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=42.65 E-value=13 Score=26.89 Aligned_cols=23 Identities=4% Similarity=0.027 Sum_probs=17.8
Q ss_pred HhhhcCchhhHHHHHHHHHHhcCC
Q psy17486 105 KQYKENPEMFTLTARHWTNVYAGG 128 (172)
Q Consensus 105 ~~~~~~~~~~~~~a~~w~~~~~~~ 128 (172)
..+ .++..|.+.||+|+++|+..
T Consensus 133 ~~~-~d~~~y~~~~~~~~~~~~~~ 155 (156)
T 2e2c_A 133 DMW-SNQTEYKKVLHEKYKTAQSD 155 (156)
T ss_dssp HHT-TCHHHHHHHHHHHHHHHHHC
T ss_pred HHh-cCHHHHHHHHHHHHHHhccC
Confidence 344 46667899999999999864
No 158
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=40.09 E-value=28 Score=28.56 Aligned_cols=28 Identities=14% Similarity=0.059 Sum_probs=13.7
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhcCCC
Q psy17486 135 FDSKIQRLTDMGVMSHDARVALSTYNWE 162 (172)
Q Consensus 135 ~~~kv~~l~~~gf~~~~a~~aLs~~~W~ 162 (172)
...+|.-|..+||+.+.+..+|+.+-+-
T Consensus 78 l~~~i~~L~~LGls~e~V~kiL~k~P~l 105 (335)
T 4fp9_B 78 LLDIISEFILLGLNPEPVCVVLKKSPQL 105 (335)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhChhh
Confidence 3444445555555555555555544433
No 159
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=36.86 E-value=34 Score=27.85 Aligned_cols=37 Identities=16% Similarity=0.379 Sum_probs=31.2
Q ss_pred hHHHHHHHHHc-CCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486 135 FDSKIQRLTDM-GVMSHDARVALSTYNWELERATEAIF 171 (172)
Q Consensus 135 ~~~kv~~l~~~-gf~~~~a~~aLs~~~W~~~~a~~~l~ 171 (172)
-+++...+... |=|+..|--.|.+.+|+++.|++..|
T Consensus 45 ~~~~~~~f~~~~~~~~~~~~~~l~~~~w~~~~~~~~~~ 82 (362)
T 4gew_A 45 DEQKLHEFAIITATDEAFAQSILQDVDWDLKKALDVFY 82 (362)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHTTSSSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCcHHHHHHHHhhcCchHHHHHHHHc
Confidence 36677777655 88889999999999999999998766
No 160
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=36.43 E-value=22 Score=25.81 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=18.4
Q ss_pred HHhhhcCchhhHHHHHHHHHHhcC
Q psy17486 104 AKQYKENPEMFTLTARHWTNVYAG 127 (172)
Q Consensus 104 ~~~~~~~~~~~~~~a~~w~~~~~~ 127 (172)
+..++.++..|.+.||+|+++++.
T Consensus 141 a~~~~~~~~~y~~~v~~~~~~~~~ 164 (165)
T 2ucz_A 141 CILWRDNRPEFERQVKLSILKSLG 164 (165)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCHHHHHHHHHHHHHHHhh
Confidence 345566777889999999988864
No 161
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=33.42 E-value=83 Score=24.68 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=33.0
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486 135 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF 171 (172)
Q Consensus 135 ~~~kv~~l~~~gf~~~~a~~aLs~~~W~~~~a~~~l~ 171 (172)
-...++.+..||++.+.....|+...|+.-.|+=+||
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~ll 325 (328)
T 3fe3_A 289 DQKRIDIMVGMGYSQEEIQESLSKMKYDEITATYLLL 325 (328)
T ss_dssp CHHHHHHHHHTTCCHHHHHHHHHTTCCSHHHHHHHHH
T ss_pred cHHHHHHHHHCCCCHHHHHHHHHcCCCCHHHHHHHHh
Confidence 4667889999999999999999999999999887776
No 162
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.23 E-value=90 Score=18.90 Aligned_cols=39 Identities=21% Similarity=0.283 Sum_probs=33.2
Q ss_pred CCchHHHHHHHHHc--CCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486 132 NPDFDSKIQRLTDM--GVMSHDARVALSTYNWELERATEAIF 171 (172)
Q Consensus 132 ~~~~~~kv~~l~~~--gf~~~~a~~aLs~~~W~~~~a~~~l~ 171 (172)
+......++.+.+| ..+.+..+.-|...+ .++..+|.+|
T Consensus 10 ~~q~~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienIL 50 (58)
T 2ejs_A 10 NSQLNAMAHQIQEMFPQVPYHLVLQDLQLTR-SVEITTDNIL 50 (58)
T ss_dssp CCHHHHHHHHHHHHCCSSCHHHHHHHHHHHC-SHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHH
Confidence 44678888888888 778889999998888 9999999887
No 163
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.51 E-value=1e+02 Score=18.81 Aligned_cols=39 Identities=10% Similarity=0.123 Sum_probs=33.8
Q ss_pred CCchHHHHHHHHHc--CCChHHHHHHHHhcCCChHHHHHHhh
Q psy17486 132 NPDFDSKIQRLTDM--GVMSHDARVALSTYNWELERATEAIF 171 (172)
Q Consensus 132 ~~~~~~kv~~l~~~--gf~~~~a~~aLs~~~W~~~~a~~~l~ 171 (172)
+...+.+++.+.+| ..+.+..+.-|...+ .++..+|.+|
T Consensus 10 ~~ql~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienIL 50 (61)
T 2ekf_A 10 DVQLATLAQRVKEVLPHVPLGVIQRDLAKTG-CVDLTITNLL 50 (61)
T ss_dssp CCCHHHHHHHHHHHCSSSCHHHHHHHHHTSC-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHH
Confidence 45688899999998 778899999998887 9999999987
No 164
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=26.91 E-value=36 Score=24.89 Aligned_cols=24 Identities=0% Similarity=-0.057 Sum_probs=18.5
Q ss_pred HHhhhc-CchhhHHHHHHHHHHhcC
Q psy17486 104 AKQYKE-NPEMFTLTARHWTNVYAG 127 (172)
Q Consensus 104 ~~~~~~-~~~~~~~~a~~w~~~~~~ 127 (172)
+..++. ++..|.+.||+|++++..
T Consensus 144 a~~~~~~d~~~f~~~~~~~~~~~~~ 168 (172)
T 2y9m_A 144 GNIIRCGDMSAYQGIVKYFLAERER 168 (172)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 445566 777889999999988764
No 165
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=26.15 E-value=1.9e+02 Score=21.07 Aligned_cols=15 Identities=53% Similarity=1.229 Sum_probs=10.4
Q ss_pred CcEEEEcCCCCCCCC
Q psy17486 3 DTTVKFVTKIWHPNI 17 (172)
Q Consensus 3 ~~~i~F~p~~YP~~p 17 (172)
.|+|+|+++.|+.+.
T Consensus 71 PP~v~f~t~i~HPnV 85 (183)
T 3rz3_A 71 PPAFRFLTKMWHPNI 85 (183)
T ss_dssp CCEEEESSCCCCTTB
T ss_pred CCeeEecCCCccCCC
Confidence 577888777776553
No 166
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=25.54 E-value=15 Score=28.83 Aligned_cols=35 Identities=20% Similarity=0.411 Sum_probs=0.0
Q ss_pred HHHHHHHH-HcCCChHHHHHHHHhcCCChHHHHHHh
Q psy17486 136 DSKIQRLT-DMGVMSHDARVALSTYNWELERATEAI 170 (172)
Q Consensus 136 ~~kv~~l~-~~gf~~~~a~~aLs~~~W~~~~a~~~l 170 (172)
.++|..+. .-|.+..=+...|+..+||.+.|+..+
T Consensus 199 ~~~v~~~~~~T~mn~~~s~~cL~~~~Wd~~~A~~~F 234 (250)
T 1jkg_B 199 QEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAF 234 (250)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 34555554 337788888999999999999998654
No 167
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=24.05 E-value=58 Score=24.62 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=22.1
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhc
Q psy17486 135 FDSKIQRLTDMGVMSHDARVALSTY 159 (172)
Q Consensus 135 ~~~kv~~l~~~gf~~~~a~~aLs~~ 159 (172)
.++.++.|+.+||.+.+|..|++..
T Consensus 160 ~~ea~~AL~~LGy~~~ea~~av~~~ 184 (203)
T 1cuk_A 160 EQEAVARLVALGYKPQEASRMVSKI 184 (203)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 4678999999999999999888876
No 168
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=23.10 E-value=1.2e+02 Score=17.76 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=16.3
Q ss_pred HHHHHHHHhcCCChHHHHHHh
Q psy17486 150 HDARVALSTYNWELERATEAI 170 (172)
Q Consensus 150 ~~a~~aLs~~~W~~~~a~~~l 170 (172)
.....+|..++|+..+|.+.|
T Consensus 22 ~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 22 IFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHH
Confidence 556788888888888887755
Done!