RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17486
(172 letters)
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure,
ATP-binding, isopeptide BO ligase, nucleotide-binding,
UBL conjugation pathway; 1.80A {Homo sapiens} PDB:
3k9p_A 1yla_A 2o25_A
Length = 201
Score = 181 bits (461), Expect = 7e-59
Identities = 88/153 (57%), Positives = 104/153 (67%), Gaps = 26/153 (16%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDA
Sbjct: 74 VRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA---- 129
Query: 80 QYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKI 139
VVA QYK+NPEMF TAR W +VYAG P +P++ KI
Sbjct: 130 ----------------------VVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKI 167
Query: 140 QRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
+ L MG + VALS+ +W++E ATE + +
Sbjct: 168 ENLCAMGFDRNAVIVALSSKSWDVETATELLLS 200
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 178 bits (454), Expect = 3e-57
Identities = 87/153 (56%), Positives = 103/153 (67%), Gaps = 26/153 (16%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDA
Sbjct: 126 VRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA---- 181
Query: 80 QYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKI 139
VVA QYK+NPEMF TAR W +VYAG P +P++ KI
Sbjct: 182 ----------------------VVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKI 219
Query: 140 QRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
+ L G + VALS+ +W++E ATE + +
Sbjct: 220 ENLCAAGFDRNAVIVALSSKSWDVETATELLLS 252
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC,
ligase; 1.90A {Plasmodium yoelii}
Length = 216
Score = 170 bits (432), Expect = 2e-54
Identities = 63/152 (41%), Positives = 84/152 (55%), Gaps = 27/152 (17%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
+KF+TKIWHPNISS TGAICLD+LK++W+ A+T+RT LLS+QAL++ +PDDPQDA VAK
Sbjct: 89 IKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAK 148
Query: 80 QYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKI 139
YKEN +F TA WT +A K + I
Sbjct: 149 MYKENHALFVKTASVWTKTFA---------------------------TGPKEEPREVII 181
Query: 140 QRLTDMGVMSHDARVALSTYNWELERATEAIF 171
+++T+MG A+ AL NW A +
Sbjct: 182 KKITEMGFSEDQAKNALIKANWNETLALNTLL 213
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent
degradation, ligase; NMR {Saccharomyces cerevisiae}
SCOP: a.5.2.1 d.20.1.1
Length = 215
Score = 158 bits (400), Expect = 2e-49
Identities = 52/151 (34%), Positives = 72/151 (47%), Gaps = 15/151 (9%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
++F TK++HPNISSVTGAICLDIL++ W+ +TL++ L+SLQAL+ + EP+DPQDA VA+
Sbjct: 69 MQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQ 128
Query: 80 QYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKI 139
Y + E F TA WT +YA + K N E I
Sbjct: 129 HYLRDRESFNKTAALWTRLYASETSNGQKGNVEE---------------SDLYGIDHDLI 173
Query: 140 QRLTDMGVMSHDARVALSTYNWELERATEAI 170
G L + +
Sbjct: 174 DEFESQGFEKDKIVEVLRRLGVKSLDPNDNN 204
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating
enzyme, protein degradatio structural proteomics in
europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB:
2bf8_A
Length = 159
Score = 147 bits (372), Expect = 6e-46
Identities = 72/82 (87%), Positives = 77/82 (93%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDAVVA
Sbjct: 77 VRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVAN 136
Query: 80 QYKENPEMFTLTARHWTNVYAG 101
QYK+NPEMF TAR W +VYAG
Sbjct: 137 QYKQNPEMFKQTARLWAHVYAG 158
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721,
structural genomics, structural genomics consortium,
SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Length = 193
Score = 143 bits (362), Expect = 5e-44
Identities = 50/81 (61%), Positives = 62/81 (76%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
+KF+TKIWHPNISS TGAICLDILK +W+ A+T+RT LLS+QA++A P DPQDA VAK
Sbjct: 111 MKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAK 170
Query: 80 QYKENPEMFTLTARHWTNVYA 100
EN +F TA+ WT +A
Sbjct: 171 MMIENHPLFVQTAKLWTETFA 191
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces
cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Length = 149
Score = 140 bits (356), Expect = 1e-43
Identities = 47/81 (58%), Positives = 63/81 (77%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
++F TK++HPNISSVTGAICLDILK+ W+ +TL++ L+SLQAL+ + EP+DPQDA VA+
Sbjct: 68 MQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQ 127
Query: 80 QYKENPEMFTLTARHWTNVYA 100
Y + E F TA WT +YA
Sbjct: 128 HYLRDRESFNKTAALWTRLYA 148
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas
conjugation pathway, structural genomics, structural
genomi consortium; 1.85A {Plasmodium falciparum} PDB:
3e95_A
Length = 149
Score = 138 bits (350), Expect = 8e-43
Identities = 44/81 (54%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V+FLTKI+HPNI G ICLDILKD+W+ A+ +RTVLLS+QAL+++ EPDDP D+ VA+
Sbjct: 67 VRFLTKIYHPNIDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAE 125
Query: 80 QYKENPEMFTLTARHWTNVYA 100
+K++ AR W +YA
Sbjct: 126 HFKQDKNDAEHVARQWNKIYA 146
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL
structural genomics consortium, SGC, ligase; HET: PG4;
2.38A {Plasmodium falciparum}
Length = 152
Score = 137 bits (348), Expect = 2e-42
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 19 SVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVL-LSLQALMAAAEPDDPQDAVV 77
S+ F+ K+ HPN+ +G++CLD++ W +L V + L L+ P DP ++
Sbjct: 64 SIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDA 123
Query: 78 AKQYKENPEMFTLTARHWTNVYA 100
A ++ ++ + + +YA
Sbjct: 124 ASLLMKDKNIYEEKVKEYVKLYA 146
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A
2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Length = 155
Score = 137 bits (346), Expect = 4e-42
Identities = 41/81 (50%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V+FLTKI+HPNI G ICLD+LK W+ A+ +RTVLLS+QAL+A+ P+DP VA+
Sbjct: 71 VRFLTKIYHPNIDR-LGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAE 129
Query: 80 QYKENPEMFTLTARHWTNVYA 100
+ +N + AR WT +YA
Sbjct: 130 DWIKNEQGAKAKAREWTKLYA 150
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein
complex, E3 ligase, ubiquitiny TPR, heat-shock protein;
2.9A {Homo sapiens} SCOP: d.20.1.1
Length = 154
Score = 136 bits (345), Expect = 7e-42
Identities = 45/81 (55%), Positives = 59/81 (72%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V+F+TKI+HPN+ G ICLDILKD+W+ A+ +RTVLLS+QAL++A PDDP VA+
Sbjct: 71 VRFMTKIYHPNVDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAE 129
Query: 80 QYKENPEMFTLTARHWTNVYA 100
Q+K N TAR WT +YA
Sbjct: 130 QWKTNEAQAIETARAWTRLYA 150
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI,
protein structure initiative ubiquitin conjugating
enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Length = 171
Score = 135 bits (343), Expect = 2e-41
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 19 SVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVL-LSLQALMAAAEPDDPQDAVV 77
S+ F +I HPN+ +G++CLD++ W L + + L L+ P DP +
Sbjct: 73 SIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQA 132
Query: 78 AKQYKENPEMFTLTARHWTNVYA 100
A + F R + +A
Sbjct: 133 AHLLHADRVGFDALLREHVSTHA 155
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural
genomics, structural genomics consortium; 2.10A {Homo
sapiens}
Length = 179
Score = 135 bits (342), Expect = 3e-41
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 19 SVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLS-LQALMAAAEPDDPQDAVV 77
S+ F+ KI+HPNI +G +CLD++ W A L + S L L+A P DP +
Sbjct: 86 SIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDA 145
Query: 78 AKQYKENPEMFTLTARHWTNVYA 100
A Y PE + + + YA
Sbjct: 146 AAMYLHRPEEYKQKIKEYIQKYA 168
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo
sapiens} SCOP: d.20.1.1
Length = 158
Score = 134 bits (339), Expect = 5e-41
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
FLTKI+HPN+ + G IC+++LK W A + +R VLL+++ L+ P+ + +
Sbjct: 79 GYFLTKIFHPNVGA-NGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGR 137
Query: 80 QYKENPEMFTLTARHWTNVYA 100
EN E + AR T ++
Sbjct: 138 LLLENYEEYAARARLLTEIHG 158
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural
genomics consortium, ubiquit ubiquitin-conjugating
enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP:
d.20.1.1
Length = 166
Score = 134 bits (340), Expect = 5e-41
Identities = 42/81 (51%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V F TKI+HPNI+S GAICLDILKDQW+ A+T+ VLLS+ +L+ PDDP +A
Sbjct: 87 VNFTTKIYHPNINS-QGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAH 145
Query: 80 QYKENPEMFTLTARHWTNVYA 100
YK + + TAR W+ YA
Sbjct: 146 LYKSDRMRYDQTAREWSQKYA 166
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway,
structural genomics, protein structure initiative; 1.10A
{Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A
2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B
3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D
4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Length = 150
Score = 134 bits (339), Expect = 6e-41
Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V F T+I+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+ PDDP +A+
Sbjct: 70 VAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 128
Query: 80 QYKENPEMFTLTARHWTNVYA 100
YK + E + AR WT YA
Sbjct: 129 IYKTDRERYNQLAREWTQKYA 149
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL
conjugation pathway; HET: CME; 1.94A {Homo sapiens}
SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Length = 165
Score = 133 bits (338), Expect = 1e-40
Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V F T+I+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+ PDDP +A+
Sbjct: 85 VAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 143
Query: 80 QYKENPEMFTLTARHWTNVYA 100
YK + E + AR WT YA
Sbjct: 144 IYKTDREKYNRIAREWTQKYA 164
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation
pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Length = 194
Score = 134 bits (339), Expect = 2e-40
Identities = 38/81 (46%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V F T+I+H NI+S G ICLDILKD W+ A+T+ VLLS+ +L+ P DP +A
Sbjct: 114 VTFRTRIYHCNINS-QGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIAT 172
Query: 80 QYKENPEMFTLTARHWTNVYA 100
QY N AR WT YA
Sbjct: 173 QYMTNRAEHDRMARQWTKRYA 193
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural
genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo
sapiens} SCOP: d.20.1.1
Length = 169
Score = 131 bits (332), Expect = 8e-40
Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Query: 20 VKFLTKIWHPNISSVTGAICLDIL----KDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
++FLT I+HPNI S G ICLD+L K W ++ + TVL S+Q LM+ PDDP A
Sbjct: 70 IRFLTPIYHPNIDS-AGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMA 128
Query: 76 VVAKQYKENPEMFTLTARHWTNVYAG 101
++ ++K N F AR WT +A
Sbjct: 129 DISSEFKYNKPAFLKNARQWTEKHAR 154
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure,
elongated shape, E3 ubiquitin ligase, E2 ubiquitin
conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1
PDB: 1fbv_C* 3sy2_C 3sqv_C
Length = 154
Score = 123 bits (311), Expect = 9e-37
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVA 78
+ F TKI+HPNI G +CL ++ + W A V+ SL AL+ +P+ P A +A
Sbjct: 68 ITFKTKIYHPNIDE-KGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLA 126
Query: 79 KQYKENPEMFTLTARHWTNVYA 100
++Y ++ + F A +T Y
Sbjct: 127 EEYSKDRKKFCKNAEEFTKKYG 148
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A
{Saccharomyces cerevisiae} PDB: 3tdi_C
Length = 190
Score = 124 bits (313), Expect = 1e-36
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V L KI+HPNI G +CL+IL++ W+ A+ L++++ L L P+DP + AK
Sbjct: 99 VVCLKKIFHPNIDL-KGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAK 157
Query: 80 QYKENPEMFTLTARHWTNVYA 100
E + F R + +
Sbjct: 158 LLCEGEKEFAEAVRLTMSGGS 178
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2
M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Length = 160
Score = 123 bits (310), Expect = 1e-36
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
VK T ++HPNI G +CL+IL++ W +T+ +++ LQ L P+DP + A+
Sbjct: 70 VKCETMVYHPNIDL-EGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAE 128
Query: 80 QYKENPEMFTLTARHWTNVYA 100
+ N +F +
Sbjct: 129 VLQNNRRLFEQNVQRSMRGGY 149
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular
complex, ubiquitin, ATP, conformational change,
thioester, switch, adenylation, protein turnover,
ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Length = 180
Score = 120 bits (304), Expect = 2e-35
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
VK T ++HPNI G + L+IL++ W +T+ +++ LQ L P+DP + A+
Sbjct: 90 VKCETMVYHPNIDL-EGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAE 148
Query: 80 QYKENPEMFTLTARHWTNVYA 100
+ N +F +
Sbjct: 149 VLQNNRRLFEQNVQRSMRGGY 169
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens}
SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Length = 155
Score = 120 bits (302), Expect = 2e-35
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 20 VKFLTKIWHPNISSVTGAICLDIL-KDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVA 78
+KF TKI+HPN+ G ICL I+ + W VL +L L+ +P +A
Sbjct: 70 IKFTTKIYHPNVDE-NGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLA 128
Query: 79 KQYKENPEMFTLTARHWTNVYA 100
+NPE+F A +T +
Sbjct: 129 DLLTQNPELFRKNAEEFTLRFG 150
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein
complex, ubiquitin conjugating ENZY complex, peroxisomal
protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A
2y9o_A
Length = 172
Score = 119 bits (300), Expect = 6e-35
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 20 VKFL-TKIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
+ F+ I H N+ S TG ICL+ILK ++W L + ++ L+ D P D +
Sbjct: 84 ISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDI 143
Query: 78 AKQYKEN-PEMFTLTARHWTNVYA 100
+ + +++
Sbjct: 144 GNIIRCGDMSAYQGIVKYFLAERE 167
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin
carrier protein, thioester ligase; 2.00A {Spisula
solidissima} SCOP: d.20.1.1
Length = 156
Score = 117 bits (296), Expect = 2e-34
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
VKF T WHPN+ +G ICLDILK+ W A+ +RT+LLSLQ+L+ P +A A
Sbjct: 75 VKFTTPCWHPNVDQ-SGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAAD 133
Query: 80 QYKENPEMFTLTARHWTNVYA 100
+ N +
Sbjct: 134 MWS-NQTEYKKVLHEKYKTAQ 153
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle,
nucleotide-binding, UBL CON pathway; 2.50A {Homo
sapiens} PDB: 2edi_A
Length = 167
Score = 117 bits (296), Expect = 2e-34
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQ------WAAAMTLRTVLLSLQALMAAA-EPDDP 72
VK LTKIWHPNI+ TG ICL +L++ WA TL+ V+ L +L DDP
Sbjct: 80 VKCLTKIWHPNITE-TGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDP 138
Query: 73 QDAVVAKQYKENPEMFTLTARHWTNVYA 100
+ A+ + + E F + YA
Sbjct: 139 LNIEAAEHHLRDKEDFRNKVDDYIKRYA 166
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens}
SCOP: d.20.1.1
Length = 179
Score = 116 bits (293), Expect = 9e-34
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 19 SVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVA 78
+VKFLT +HPN+ + G I LDILK++W+A +RT+LLS+Q+L+ D P + A
Sbjct: 95 TVKFLTPCYHPNVDT-QGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAA 153
Query: 79 KQYKENPEMFTLTARHWTNVYA 100
+ +K NP F + +
Sbjct: 154 ELWK-NPTAFKKYLQETYSKQV 174
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics
consortium, SGC, ubiquitin- conjugating enzyme; 2.18A
{Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 113 bits (286), Expect = 6e-33
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILK--DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
VKF+T +HPN+ TG C+D L ++W TL ++LL+LQ +++ ++P +
Sbjct: 89 VKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEA 148
Query: 78 AKQYKENPEMFTLTARHWT 96
A+ ++ ++ R +
Sbjct: 149 ARILVKDESLYRTILRLFN 167
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 109 bits (274), Expect = 3e-31
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
VKF +HPN+ +G ICL IL + W A+TL+ ++L +Q L+ + P+ P
Sbjct: 75 VKFPAGFYHPNVYP-SGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPA 133
Query: 78 AKQYKENPEMFTLTARHWTNVYA 100
+ + N + Y+
Sbjct: 134 WRSFSRNKAEYDKKVLLQAKQYS 156
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase;
2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A
2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Length = 152
Score = 108 bits (272), Expect = 7e-31
Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V+F+++++HPNI + G+ICLDIL++QW+ + +L S+Q+L+ P+ P ++ A+
Sbjct: 70 VRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 128
Query: 80 QYKENPEMFTLTARHWT 96
Y E+ + R
Sbjct: 129 MYSESKREYNRRVRDVV 145
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1;
inhibition, hydrolase-ligase complex; 3.30A {Homo
sapiens} PDB: 4ddi_A
Length = 399
Score = 113 bits (284), Expect = 1e-30
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
V F T+I+HPNI+S G+I LDIL+ QW+ A+T+ VLLS+ +L+ PDDP +A+
Sbjct: 69 VAFTTRIYHPNINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR 127
Query: 80 QYKENPEMFTLTARHWTNVY 99
YK + E + AR WT Y
Sbjct: 128 IYKTDREKYNRIAREWTQKY 147
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation;
2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 169
Score = 107 bits (270), Expect = 2e-30
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
VKFL++++HPN+ + G ICLDIL+++W + ++L S+Q+L P P + A
Sbjct: 70 VKFLSEMFHPNVYA-NGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAAT 128
Query: 80 QYKENPEMFTLTARHWTNVYA 100
+K++ + +
Sbjct: 129 LFKDHKSQYVKRVKETVEKSW 149
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics,
PSI, protein structure initiative; 2.63A {Trypanosoma
cruzi}
Length = 167
Score = 104 bits (261), Expect = 4e-29
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVL---LSLQALMAAAEPDDPQDAV 76
V+F+T ++ P ++ G IC ++ D W V+ L + DD +
Sbjct: 88 VRFVTPVYSPLVTG-EGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPE 146
Query: 77 VAKQYKENPEMFTLTAR 93
++ P+ F R
Sbjct: 147 ARHYLEKFPQDFAARVR 163
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small
ubiquitin like modifer, SMT3, ligase; 1.30A {Homo
sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A
1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A*
1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Length = 161
Score = 103 bits (259), Expect = 7e-29
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
KF ++HPN+ +G +CL IL++ W A+T++ +LL +Q L+ P A
Sbjct: 78 CKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEA 136
Query: 78 AKQYKENPEMFTLTARHWTNVYA 100
Y +N + R +A
Sbjct: 137 YTIYCQNRVEYEKRVRAQAKKFA 159
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Length = 138
Score = 101 bits (254), Expect = 2e-28
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 19 SVKFLTKIWHPNISSVTGAICLDILKD-QWAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
V F++KI P ++ TG + D W A T+ T+LL L+ MA +
Sbjct: 75 KVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKE 134
Query: 78 AKQY 81
+ +
Sbjct: 135 GETF 138
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein
interaction, protein ligase complex; HET: DNA; 1.90A
{Schizosaccharomyces pombe}
Length = 163
Score = 101 bits (255), Expect = 3e-28
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQALMAAAEPDDPQDAVV 77
+F ++HPN+ +G +CL IL ++ W A+T++ +LL +Q L+ P
Sbjct: 81 CRFTPPLFHPNVYP-SGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEA 139
Query: 78 AKQYKENPEMFTLTARHWTNVYA 100
+K++ + R A
Sbjct: 140 YTMFKKDKVEYEKRVRAQARENA 162
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme
domain, E2 domain, ligase-ligas inhibitor complex; HET:
U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Length = 183
Score = 101 bits (253), Expect = 1e-27
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 15/108 (13%)
Query: 20 VKFLTKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLRTVLLSLQALMAA 66
+FLTK+WHPNI TG +C+ IL ++W +RT+LLS+ +L+
Sbjct: 74 FRFLTKMWHPNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNE 132
Query: 67 AEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMF 114
P + + Y++ E R +T++ V +
Sbjct: 133 PNTFSPANVDASVMYRKWKESKG-KDREYTDIIRKQVLGTKVDAERDG 179
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase,
UBL conjugation pathway, endo reticulum, membrane,
metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A
2kly_A
Length = 164
Score = 97.4 bits (243), Expect = 2e-26
Identities = 19/96 (19%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALMAA 66
++F +++HPNI G +C+ IL ++W+ ++ +LLS+ +++A
Sbjct: 70 MRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAE 128
Query: 67 AEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGV 102
+ + +K ++++ E F A+ G+
Sbjct: 129 PNDESGANVDASKMWRDDREQFYKIAKQIVQKSLGL 164
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase,
yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 165
Score = 90.5 bits (225), Expect = 8e-24
Identities = 16/90 (17%), Positives = 37/90 (41%), Gaps = 14/90 (15%)
Query: 20 VKFLTKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLRTVLLSLQALMAA 66
+ F I HPNI G +C+ IL +++W+ ++ +LLS+ ++++
Sbjct: 71 LTFTPSILHPNIYP-NGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSE 129
Query: 67 AEPDDPQDAVVAKQYKENPEMFTLTARHWT 96
+ + +++N F +
Sbjct: 130 PNIESGANIDACILWRDNRPEFERQVKLSI 159
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing,
nuclear protein, UBL conjugation pathway,ubiquitin,
ligase, structural genomics; 1.69A {Homo sapiens} SCOP:
d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Length = 160
Score = 89.0 bits (221), Expect = 4e-23
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 19 SVKFLTKIWHPNISSVTGAI---CLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
V+F+TKI ++S G + + +L +W + +++ VL L+ LM + E
Sbjct: 94 FVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLMMSKENMKLPQP 152
Query: 76 VVAKQYK 82
+ Y
Sbjct: 153 PEGQCYS 159
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation
pathway, structural genomics, structural genomics
consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB:
1pzv_A
Length = 172
Score = 88.2 bits (219), Expect = 1e-22
Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 14/80 (17%)
Query: 20 VKFLTKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLRTVLLSLQALMAA 66
+KF+T+IWHPN+ G +C+ IL +++W T+ T+++S+ +++A
Sbjct: 84 MKFITEIWHPNVDK-NGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLAD 142
Query: 67 AEPDDPQDAVVAKQYKENPE 86
D P + AK+++E+
Sbjct: 143 PNGDSPANVDAAKEWREDRN 162
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating
enzyme variant, UBC13, HUBC13, polyubiquitination,
ligase, signaling protein; NMR {Homo sapiens}
Length = 170
Score = 87.1 bits (216), Expect = 2e-22
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 19 SVKFLTKIWHPNISSVTGAI---CLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDA 75
V+F+TKI ++S G + + +L +W + +++ VL L+ LM + E
Sbjct: 104 FVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLMMSKENMKLPQP 162
Query: 76 VVAKQYK 82
+ Y
Sbjct: 163 PEGQCYS 169
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics,
structural genomics consortium, unknown function; 1.86A
{Plasmodium vivax} SCOP: d.20.1.1
Length = 125
Score = 83.0 bits (206), Expect = 2e-21
Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 20 VKFLTK-IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 71
V FL K H ++ S G ICL +L D + ++++ ++LS+ +++++A+
Sbjct: 72 VYFLQKPPKHTHVYS-NGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEKK 123
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown
function, structural genomics consortium, SGC; 2.80A
{Plasmodium falciparum 3D7}
Length = 136
Score = 82.0 bits (203), Expect = 8e-21
Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 20 VKFLTK-IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEP 69
V FL K H ++ S G ICL +L D + ++++ ++LS+ +++++A+
Sbjct: 86 VYFLQKPPKHTHVYS-NGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE 135
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural
genomics consortium, (SGC), ligase; 1.82A {Homo sapiens}
SCOP: d.20.1.1
Length = 136
Score = 81.2 bits (201), Expect = 1e-20
Identities = 16/48 (33%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 20 VKFLTK--IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMA 65
V F + HP++ S G ICL IL + W+ A+++++V LS+ ++++
Sbjct: 90 VMFTGENIPVHPHVYS-NGHICLSILTEDWSPALSVQSVCLSIISMLS 136
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase,
UBL conjugation pathway, structural genomics consortium
(SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 187
Score = 81.4 bits (201), Expect = 5e-20
Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 4/97 (4%)
Query: 19 SVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDP---QDA 75
S+ +T ++ D D W A ++ T+L L + M P
Sbjct: 79 SIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSD 138
Query: 76 VVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPE 112
+Q F L + + ++ VV ++ K+ +
Sbjct: 139 FTKRQLAVQSLAFNLKDKVFCELFPEVV-EEIKQKQK 174
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating
enzyme, structural genomics consortium ,SGC; 1.80A {Homo
sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Length = 186
Score = 80.7 bits (199), Expect = 8e-20
Identities = 11/76 (14%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQ-WAAAMTLRTVLLSLQALMAAAEPDDPQDAVVA 78
V+ + + GA+C+++L Q W++A ++ +V++ + A + + A
Sbjct: 108 VRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKN 167
Query: 79 K-QYKENPEMFTLTAR 93
+ + + +
Sbjct: 168 QYNLARAQQSYNSIVQ 183
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G
structural genomics consortium, SGC, ligase; 2.40A
{Plasmodium falciparum} PDB: 3e95_C
Length = 156
Score = 76.6 bits (189), Expect = 2e-18
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 21/84 (25%)
Query: 5 TVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAIC---LDILKDQWAAAMTLRTVLLSL- 60
TVKF TKI + + G + L ILK+ W T+ T+L+SL
Sbjct: 90 TVKFDTKIEMSCVDN---------------CGRVIKNNLHILKN-WNRNYTIETILISLR 133
Query: 61 QALMAAAEPDDPQDAVVAKQYKEN 84
Q ++++A PQ + Y N
Sbjct: 134 QEMLSSANKRLPQPN-EGEVYSNN 156
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 71.2 bits (174), Expect = 2e-15
Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 24/122 (19%)
Query: 5 TVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILK-------DQW-AAAMTLRTV 56
V T H + ++PN+ + G +CL IL ++W + V
Sbjct: 145 LVNLETTGGH---------SVRFNPNLYN-DGKVCLSILNTWHGRPEEKWNPQTSSFLQV 194
Query: 57 LLSLQALMAAAEP--DDP--QDAVVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPE 112
L+S+Q+L+ AEP ++P + + ++ + R T +A + +Q +
Sbjct: 195 LVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWA--MLEQIRNPSP 252
Query: 113 MF 114
F
Sbjct: 253 CF 254
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin
specific protease 5, USP 5, UBA domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 34.3 bits (79), Expect = 0.002
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 126 AGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
S P + + + MG A AL N LERA + IF+
Sbjct: 1 GSSGSSGPP-EDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFS 46
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain,
UBA domain, three helix bundle, structural genomics; NMR
{Arabidopsis thaliana} SCOP: a.5.2.1
Length = 73
Score = 34.5 bits (79), Expect = 0.002
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 129 PSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
+ S + L G AR AL ++E+AT+ +F
Sbjct: 23 HQTSDIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFN 66
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol
protease, UBL conjugation pathway, metal-binding,
zinc-finger,structural genomics; 2.80A {Homo sapiens}
Length = 854
Score = 36.0 bits (82), Expect = 0.005
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 126 AGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF 171
+ + +P + + + MG A AL N LERA + IF
Sbjct: 711 STSAAADPPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIF 756
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.011
Identities = 16/111 (14%), Positives = 37/111 (33%), Gaps = 27/111 (24%)
Query: 81 YKENP---EMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPS-----KN 132
YK + +++ H+ + Y + NP T ++ GG +N
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLT--------IHFGGEKGKRIREN 1687
Query: 133 ---PDFDSKIQRLTDMGVMSHDARVALSTYNWELER----ATE----AIFT 172
F++ + + + ++Y + E+ AT+ A+
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL 1738
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin
associated domain, UBA domain, ubiquitin proteosome
pathway, DNA binding protein; NMR {Homo sapiens} SCOP:
a.5.2.1
Length = 49
Score = 31.7 bits (72), Expect = 0.014
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 133 PDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
++++ + + MG AL RA E + T
Sbjct: 6 SEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT 45
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain,
endocytosis/signaling protein complex; NMR
{Saccharomyces cerevisiae} SCOP: a.5.2.1
Length = 43
Score = 31.1 bits (70), Expect = 0.016
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 139 IQRLTDMGVMSHDARVALSTYNWELERAT 167
++ L+ MG +A AL NW+LE AT
Sbjct: 8 VEELSGMGFTEEEAHNALEKCNWDLEAAT 36
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural
genomics, riken structural genomics/proteomics
initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Length = 73
Score = 31.7 bits (71), Expect = 0.020
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
+ +IQ+L MG VAL+ + +L A E + +
Sbjct: 30 EEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMS 66
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal
sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE;
1.65A {Homo sapiens} PDB: 4ae4_B*
Length = 118
Score = 31.9 bits (72), Expect = 0.036
Identities = 9/50 (18%), Positives = 20/50 (40%)
Query: 123 NVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
++ K +F + + +MG D + L +N + + A E +
Sbjct: 64 EMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMA 113
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR
{Homo sapiens}
Length = 126
Score = 31.8 bits (71), Expect = 0.041
Identities = 19/82 (23%), Positives = 30/82 (36%)
Query: 91 TARHWTNVYAGVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSH 150
A +W V+ + A +V+ N + + +T MG +
Sbjct: 34 VAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFGASGLDNQPPEEIVAIITSMGFQRN 93
Query: 151 DARVALSTYNWELERATEAIFT 172
A AL N LERA + IF+
Sbjct: 94 QAIQALRATNNNLERALDWIFS 115
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.10
Identities = 27/190 (14%), Positives = 51/190 (26%), Gaps = 61/190 (32%)
Query: 16 NISSVK-----FLTKIWHPNISSVTGAICLDILKDQWAA----AMTL--RTVLLSLQALM 64
I S++ L + N CL +L + A A L + +L + +
Sbjct: 226 RIHSIQAELRRLLKSKPYEN--------CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 65 AAAEPDDPQDAVVAKQYK-----ENPEMFT------LTARHWTNVYAGVVAKQYKE-NPE 112
D + A + T L + + + + ++ NP
Sbjct: 278 T--------DFLSAATTTHISLDHHSMTLTPDEVKSLLLK-YLDCRPQDLPREVLTTNPR 328
Query: 113 MFTLTAR-------HWTNV-YAGGPSKNPDFDSKIQRLT---------DMGVMSHDARV- 154
++ A W N + +S + L + V A +
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 155 --ALSTYNWE 162
LS W
Sbjct: 389 TILLSLI-WF 397
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex,
signaling protein; NMR {Saccharomyces cerevisiae} SCOP:
a.5.2.1
Length = 58
Score = 29.3 bits (66), Expect = 0.12
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 126 AGGPSKNPD--FDSKIQRLTDMGVMSHDARV-ALSTYNWELERATEAIF 171
GG +P+ ++ ++++L DMG D V AL ++ A +++
Sbjct: 6 GGGGILDPEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLL 54
>1sau_A Sulfite reductase, desulfoviridin-type subunit GA; orthogonal
helical bundle, oxidoreductase; 1.12A {Archaeoglobus
fulgidus} PDB: 2a5w_A
Length = 115
Score = 29.4 bits (66), Expect = 0.27
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 79 KQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFTLTARHW 121
K+ + + + F W A +AK + +P+ LT HW
Sbjct: 9 KKLRLDEDGFLQDWEEWDEEVAEALAKDTRFSPQPIELTEEHW 51
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 83
Score = 27.1 bits (60), Expect = 0.97
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 130 SKNPDFD-SKIQRLTDMGVMSHDARVALSTYNWELERATEAIF 171
++ D + +++LT+MG + A AL + + +A E +
Sbjct: 23 DEDERVDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLI 65
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional
regulator, STRU genomics, PSI, protein structure
initiative; 2.15A {Bacillus cereus atcc 14579} SCOP:
a.4.1.9 a.121.1.1
Length = 183
Score = 26.2 bits (58), Expect = 4.6
Identities = 8/57 (14%), Positives = 20/57 (35%), Gaps = 6/57 (10%)
Query: 44 KDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAV--VAKQY----KENPEMFTLTARH 94
+ + + L AAE +A+ + + Y +++P ++ T
Sbjct: 52 LQDVRKNLGIYGIKKLHNRLEEAAEDKRMDEAIHALGEAYVAFVRKHPGLYEATFLR 108
>3lkm_A MHCK-A, myosin heavy chain kinase A; protein kinase-like fold,
ATP-binding, nucleotide- binding,
serine/threonine-protein kinase; HET: AMP; 1.60A
{Dictyostelium discoideum} PDB: 3lla_A* 3lmi_A* 3lmh_A*
3pdt_A*
Length = 307
Score = 26.6 bits (57), Expect = 4.8
Identities = 6/48 (12%), Positives = 11/48 (22%)
Query: 106 QYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 153
H+T + D TD + + D +
Sbjct: 194 GAVLTNRSTPQAFSHFTYELSNKQMIVVDIQGVDDLYTDPQIHTPDGK 241
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.129 0.397
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,748,319
Number of extensions: 157233
Number of successful extensions: 500
Number of sequences better than 10.0: 1
Number of HSP's gapped: 431
Number of HSP's successfully gapped: 71
Length of query: 172
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 85
Effective length of database: 4,272,666
Effective search space: 363176610
Effective search space used: 363176610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.7 bits)