RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17486
(172 letters)
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch8 [TaxId: 9606]}
Length = 148
Score = 86.8 bits (214), Expect = 7e-23
Identities = 38/93 (40%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 8 FVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 67
+ + V F T+I+H NI+S G ICLDILKD W+ A+T+ VLLS+ +L+
Sbjct: 56 TFSPDYPFKPPKVTFRTRIYHCNINS-QGVICLDILKDNWSPALTISKVLLSICSLLTDC 114
Query: 68 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 100
P DP +A QY N AR WT YA
Sbjct: 115 NPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 147
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa,
E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 154
Score = 84.5 bits (208), Expect = 6e-22
Identities = 72/83 (86%), Positives = 77/83 (92%)
Query: 19 SVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVA 78
V+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAAEPDDPQDAVVA
Sbjct: 72 KVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVA 131
Query: 79 KQYKENPEMFTLTARHWTNVYAG 101
QYK+NPEMF TAR W +VYAG
Sbjct: 132 NQYKQNPEMFKQTARLWAHVYAG 154
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721,
E2 domain {Toxoplasma gondii [TaxId: 5811]}
Length = 161
Score = 83.3 bits (205), Expect = 2e-21
Identities = 50/81 (61%), Positives = 62/81 (76%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
+KF+TKIWHPNISS TGAICLDILK +W+ A+T+RT LLS+QA++A P DPQDA VAK
Sbjct: 80 MKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAK 139
Query: 80 QYKENPEMFTLTARHWTNVYA 100
EN +F TA+ WT +A
Sbjct: 140 MMIENHPLFVQTAKLWTETFA 160
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc13 [TaxId: 9606]}
Length = 149
Score = 81.4 bits (200), Expect = 8e-21
Identities = 46/93 (49%), Positives = 63/93 (67%), Gaps = 1/93 (1%)
Query: 8 FVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 67
F+ + + V+F+TKI+HPN+ G ICLDILKD+W+ A+ +RTVLLS+QAL++A
Sbjct: 56 FLPEEYPMAAPKVRFMTKIYHPNVDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAP 114
Query: 68 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 100
PDDP VA+Q+K N TAR WT +YA
Sbjct: 115 NPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 147
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}
Length = 149
Score = 81.4 bits (200), Expect = 9e-21
Identities = 48/93 (51%), Positives = 65/93 (69%)
Query: 8 FVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 67
V + ++F TK++HPNISSVTGAICLDILK+ W+ +TL++ L+SLQAL+ +
Sbjct: 56 EVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSP 115
Query: 68 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 100
EP+DPQDA VA+ Y + E F TA WT +YA
Sbjct: 116 EPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 148
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC
{Caenorhabditis elegans, E2 2 [TaxId: 6239]}
Length = 147
Score = 81.0 bits (199), Expect = 1e-20
Identities = 39/82 (47%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 19 SVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVA 78
V F T+I+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+ PDDP +A
Sbjct: 66 KVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 124
Query: 79 KQYKENPEMFTLTARHWTNVYA 100
+ YK + E + AR WT YA
Sbjct: 125 RIYKTDRERYNQLAREWTQKYA 146
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Length = 152
Score = 80.6 bits (198), Expect = 2e-20
Identities = 41/82 (50%), Positives = 56/82 (68%), Gaps = 1/82 (1%)
Query: 19 SVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVA 78
V+FLTKI+HPNI G ICLD+LK W+ A+ +RTVLLS+QAL+A+ P+DP VA
Sbjct: 68 KVRFLTKIYHPNIDR-LGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVA 126
Query: 79 KQYKENPEMFTLTARHWTNVYA 100
+ + +N + AR WT +YA
Sbjct: 127 EDWIKNEQGAKAKAREWTKLYA 148
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC
{Human(Homo sapiens), E2 S [TaxId: 9606]}
Length = 151
Score = 71.7 bits (175), Expect = 4e-17
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 8 FVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 67
+ K + + FLTKI+HPN+ + G IC+++LK W A + +R VLL+++ L+
Sbjct: 60 LLGKDFPASPPKGYFLTKIFHPNVGA-NGEICVNVLKRDWTAELGIRHVLLTIKCLLIHP 118
Query: 68 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVY 99
P+ + + EN E + AR T ++
Sbjct: 119 NPESALNEEAGRLLLENYEEYAARARLLTEIH 150
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 L6 [TaxId: 9606]}
Length = 150
Score = 71.7 bits (175), Expect = 4e-17
Identities = 22/93 (23%), Positives = 35/93 (37%)
Query: 8 FVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 67
+ +KF TKI+HPN+ I + W VL +L L+
Sbjct: 54 SFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRP 113
Query: 68 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 100
+P +A +NPE+F A +T +
Sbjct: 114 NIREPLRMDLADLLTQNPELFRKNAEEFTLRFG 146
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode
(Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Length = 161
Score = 71.3 bits (174), Expect = 7e-17
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 14/91 (15%)
Query: 19 SVKFLTKIWHPNISSVTGAICLDILKD-------------QWAAAMTLRTVLLSLQALMA 65
+KF+++IWHPNI G +C+ IL D +W T+ T+LLS+ +++
Sbjct: 66 KMKFISEIWHPNIDK-EGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLT 124
Query: 66 AAEPDDPQDAVVAKQYKENPEMFTLTARHWT 96
+ P + AK +EN F
Sbjct: 125 DPNFESPANVDAAKMQRENYAEFKKKVAQCV 155
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:
4932]}
Length = 153
Score = 70.5 bits (172), Expect = 1e-16
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
VKFL++++HPN+ + G ICLDIL+++W + ++L S+Q+L P P + A
Sbjct: 69 VKFLSEMFHPNVYA-NGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAAT 127
Query: 80 QYKENPEMFTLTARHWTNVYA 100
+K++ + +
Sbjct: 128 LFKDHKSQYVKRVKETVEKSW 148
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Length = 164
Score = 69.5 bits (169), Expect = 5e-16
Identities = 17/102 (16%), Positives = 40/102 (39%), Gaps = 14/102 (13%)
Query: 8 FVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLR 54
K + + + F I HPNI G +C+ IL +++W+ ++
Sbjct: 58 EFPKDYPLSPPKLTFTPSILHPNIYP-NGEVCISILHSPGDDPNMYELAEERWSPVQSVE 116
Query: 55 TVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWT 96
+LLS+ ++++ + + +++N F +
Sbjct: 117 KILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSI 158
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch7 [TaxId: 9606]}
Length = 144
Score = 67.9 bits (165), Expect = 1e-15
Identities = 25/81 (30%), Positives = 39/81 (48%)
Query: 19 SVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVA 78
+ F TKI+HPNI I + W A V+ SL AL+ +P+ P A +A
Sbjct: 64 KITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLA 123
Query: 79 KQYKENPEMFTLTARHWTNVY 99
++Y ++ + F A +T Y
Sbjct: 124 EEYSKDRKKFCKNAEEFTKKY 144
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch10 [TaxId: 9606]}
Length = 146
Score = 67.9 bits (165), Expect = 1e-15
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 8 FVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 67
+ N +VKFLT +HPN+ + G I LDILK++W+A +RT+LLS+Q+L+
Sbjct: 55 EFPSGYPYNAPTVKFLTPCYHPNVDT-QGNISLDILKEKWSALYDVRTILLSIQSLLGEP 113
Query: 68 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 100
D P + A+ +K NP F + +
Sbjct: 114 NIDSPLNTHAAELWK-NPTAFKKYLQETYSKQV 145
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC
{Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:
6239]}
Length = 149
Score = 67.1 bits (163), Expect = 3e-15
Identities = 26/89 (29%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 8 FVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 67
T+ + +VKF++K++HPN+ + G+ICLDIL+++W+ + +L S+Q+L+
Sbjct: 57 EFTEEYPNKPPTVKFISKMFHPNVYA-DGSICLDILQNRWSPTYDVAAILTSIQSLLDEP 115
Query: 68 EPDDPQDAVVAKQYKENPEMFTLTARHWT 96
P+ P +++ A+ Y+EN + +
Sbjct: 116 NPNSPANSLAAQLYQENRREYEKRVQQIV 144
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC
{Leishmania major [TaxId: 5664]}
Length = 158
Score = 67.1 bits (163), Expect = 3e-15
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 3/102 (2%)
Query: 13 WHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRT-VLLSLQALMAAAEPDD 71
+ S+ F +I HPN+ +G++CLD++ W L + L L+ P D
Sbjct: 55 YPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSD 114
Query: 72 PQDAVVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEM 113
P + A + F R + +A ++ E+
Sbjct: 115 PLNVQAAHLLHADRVGFDALLREHVSTHA--TPQKALESIPE 154
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 J2 [TaxId: 9606]}
Length = 157
Score = 65.9 bits (160), Expect = 8e-15
Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 4/104 (3%)
Query: 8 FVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 67
+ + S+ +T ++ D D W A ++ T+L L + M
Sbjct: 55 IFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEK 114
Query: 68 EPDDP---QDAVVAKQYKENPEMFTLTARHWTNVYAGVVAKQYK 108
P +Q F L + + ++ VV ++ K
Sbjct: 115 GPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVV-EEIK 157
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 M [TaxId: 9606]}
Length = 157
Score = 65.5 bits (159), Expect = 1e-14
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 20 VKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 79
VK T ++HPNI + G +CL+IL++ W +T+ +++ LQ L P+DP + A+
Sbjct: 67 VKCETMVYHPNID-LEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAE 125
Query: 80 QYKENPEMFTLTARHWT 96
+ N +F +
Sbjct: 126 VLQNNRRLFEQNVQRSM 142
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 T [TaxId: 9606]}
Length = 154
Score = 63.3 bits (153), Expect = 7e-14
Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 8 FVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKD----QWAAAMTLRTVLLSLQAL 63
+ + + ++FLT I+HPNI S G ICLD+LK W ++ + TVL S+Q L
Sbjct: 56 IIPERYPFEPPQIRFLTPIYHPNIDS-AGRICLDVLKLPPKGAWRPSLNIATVLTSIQLL 114
Query: 64 MAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 100
M+ PDDP A ++ ++K N F AR WT +A
Sbjct: 115 MSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHA 151
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 H [TaxId: 9606]}
Length = 152
Score = 62.4 bits (151), Expect = 2e-13
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 8 FVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLS-LQALMAA 66
+ + S+ F+ KI+HPNI +G +CLD++ W A L + S L L+A
Sbjct: 53 DLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAY 112
Query: 67 AEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 100
P DP + A Y PE + + + YA
Sbjct: 113 PNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYA 146
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 61.6 bits (149), Expect = 2e-13
Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 8 FVTKIWHPNISSVKFLTKIW--HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMA 65
+ + + V F + HP++ S G ICL IL + W+ A+++++V LS+ ++++
Sbjct: 59 KFSSRYPFDSPQVMFTGENIPVHPHVYS-NGHICLSILTEDWSPALSVQSVCLSIISMLS 117
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 U [TaxId: 9606]}
Length = 148
Score = 62.4 bits (151), Expect = 2e-13
Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 1 MVDTTVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILK--DQWAAAMTLRTVLL 58
+ T+ F ++ + VKF+T +HPN+ TG C+D L ++W TL ++LL
Sbjct: 52 VFQLTIHFTSEYNY-APPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILL 110
Query: 59 SLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHW 95
+LQ +++ ++P + A+ ++ ++ R +
Sbjct: 111 ALQVMLSNPVLENPVNLEAARILVKDESLYRTILRLF 147
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 61.9 bits (150), Expect = 2e-13
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 14 HPNIS-SVKFLTKIWHPNISSVTGAI---CLDILKDQWAAAMTLRTVLLSLQALMAAAE- 68
+P V+F+TKI ++S G + + +L +W + +++ VL L+ LM + E
Sbjct: 68 YPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLMMSKEN 126
Query: 69 PDDPQDA 75
PQ
Sbjct: 127 MKLPQPP 133
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc9 [TaxId: 9606]}
Length = 156
Score = 61.3 bits (148), Expect = 4e-13
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 19 SVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALMAAAEPDDPQDAV 76
KF ++HPN+ + L IL++ W A+T++ +LL +Q L+ DP A
Sbjct: 72 KCKFEPPLFHPNVYPSGT-VSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAE 130
Query: 77 VAKQYKENPEMFTLTARHWTNVYA 100
Y +N + R +A
Sbjct: 131 AYTIYCQNRVEYEKRVRAQAKKFA 154
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme,
E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Length = 109
Score = 60.1 bits (145), Expect = 4e-13
Identities = 12/58 (20%), Positives = 26/58 (44%)
Query: 8 FVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMA 65
+ V FL K G ICL +L D + ++++ ++LS+ ++++
Sbjct: 52 IFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLS 109
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam
(Spisula solidissima), E-2C [TaxId: 6584]}
Length = 156
Score = 59.4 bits (143), Expect = 2e-12
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 8 FVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 67
+ VKF T WHPN+ +G ICLDILK+ W A+ +RT+LLSLQ+L+
Sbjct: 63 EFPSDYPYKPPVVKFTTPCWHPNVDQ-SGNICLDILKENWTASYDVRTILLSLQSLLGEP 121
Query: 68 EPDDPQDAVVAKQYKENPE 86
P +A A + E
Sbjct: 122 NNASPLNAQAADMWSNQTE 140
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 57.8 bits (139), Expect = 6e-12
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 14/71 (19%)
Query: 8 FVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLR 54
K + +KF+T+IWHPN+ G +C+ IL +++W T+
Sbjct: 54 TFPKDYPLRPPKMKFITEIWHPNVDK-NGDVCISILHEPGEDKYGYEKPEERWLPIHTVE 112
Query: 55 TVLLSLQALMA 65
T+++S+ +++A
Sbjct: 113 TIMISVISMLA 123
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}
Length = 136
Score = 57.0 bits (137), Expect = 1e-11
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 19 SVKFLTKIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQ 73
V F++KI P ++ TG + D W A T+ T+LL L+ MA +
Sbjct: 73 KVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLR 128
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 152
Score = 56.9 bits (137), Expect = 2e-11
Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 5 TVKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALM 64
+ + + N S I S G I L IL AAM L V+ L +L+
Sbjct: 90 FISINLENFDMNTISSSL---PIQEYIDS-NGWIALPILHCWDPAAMNLIMVVQELMSLL 145
Query: 65 AAAEPDD 71
P D
Sbjct: 146 -HEPPQD 151
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 50.0 bits (119), Expect = 6e-09
Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 11/75 (14%)
Query: 5 TVKFVTKIW----HPNISSVKFLT------KIWHPNISSVTGAICLDILKDQWAAAMTLR 54
T +W +P + F+ ++ + G I L L + L
Sbjct: 65 TYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDA-NGKIYLPYLHEWKHPQSDLL 123
Query: 55 TVLLSLQALMAAAEP 69
++ + + P
Sbjct: 124 GLIQVMIVVFGDEPP 138
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 49.1 bits (116), Expect = 2e-08
Identities = 12/90 (13%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 6 VKFVTKIWHPNISSVKFLTKIWHPNISSVTGAICLDIL-KDQWAAAMTLRTVLLSLQALM 64
F V+ + + GA+C+++L K W++A ++ +V++ + A +
Sbjct: 72 FSFKDNFPFDPPF-VRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATL 130
Query: 65 AAAEPDDPQDAVVAK-QYKENPEMFTLTAR 93
+ A + + + +
Sbjct: 131 VKGKARVQFGANKNQYNLARAQQSYNSIVQ 160
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 41
Score = 43.8 bits (104), Expect = 1e-07
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 133 PDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
++++ + + MG AL RA E + T
Sbjct: 2 SEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT 41
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 63
Score = 38.2 bits (89), Expect = 3e-05
Identities = 7/48 (14%), Positives = 18/48 (37%)
Query: 125 YAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
Y+ +P ++ + +MG A+ +E+ + +F
Sbjct: 9 YSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFA 56
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 73
Score = 35.2 bits (81), Expect = 5e-04
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
S + L G AR AL ++E+AT+ +F
Sbjct: 30 QSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFN 66
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 63
Score = 34.0 bits (78), Expect = 0.001
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 136 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
+ ++ +T+MG +R AL LE A + T
Sbjct: 10 EKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLT 46
>d3e46a1 a.5.2.1 (A:157-198) Ubiquitin-conjugating enzyme E2-25 kDa,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 33.2 bits (75), Expect = 0.001
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 132 NPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF 171
+P++ KI+ L G + VALS+ +W++E ATE +
Sbjct: 3 SPEYTKKIENLCAAGFDRNAVIVALSSKSWDVETATELLL 42
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 73
Score = 33.4 bits (76), Expect = 0.002
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 129 PSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 172
+ + +IQ+L MG VAL+ + +L A E + +
Sbjct: 23 QGRVAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMS 66
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C
{Saccharomyces cerevisiae [TaxId: 4932]}
Length = 43
Score = 30.3 bits (68), Expect = 0.014
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 139 IQRLTDMGVMSHDARVALSTYNWELERAT 167
++ L+ MG +A AL NW+LE AT
Sbjct: 8 VEELSGMGFTEEEAHNALEKCNWDLEAAT 36
>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2
(STS-2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 26.2 bits (58), Expect = 0.49
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 137 SKIQRLTDMGVMSHDARVAL-STYNWELERATEAIFT 172
S ++ L MG H A AL +T E A +
Sbjct: 4 SLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHD 40
>d1efva1 c.26.2.3 (A:20-207) Large, alpha subunit of electron
transfer flavoprotein ETFP, N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 188
Score = 27.0 bits (59), Expect = 0.95
Identities = 13/98 (13%), Positives = 28/98 (28%), Gaps = 6/98 (6%)
Query: 59 SLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGVVAKQYKENPEMFT--- 115
+L + AA +VA + V PE T
Sbjct: 18 TLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLI 77
Query: 116 ---LTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSH 150
++T++ AG + + ++ ++ +S
Sbjct: 78 LATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISD 115
>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 46
Score = 23.1 bits (50), Expect = 6.0
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 136 DSKIQRLTDM-GVMSHDARVALSTYNWELERATEAIF 171
++ + G AR L + W+L+ A + +
Sbjct: 6 QDALREFVAVTGAEEDRARFFLESAGWDLQIALASFY 42
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.129 0.397
Gapped
Lambda K H
0.267 0.0511 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 663,360
Number of extensions: 27948
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 41
Length of query: 172
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 93
Effective length of database: 1,322,926
Effective search space: 123032118
Effective search space used: 123032118
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.5 bits)