BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17487
(199 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 288 bits (736), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 144/199 (72%), Positives = 170/199 (85%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
MANIA QRIKREFKEV+KSEE +K IK++L+D+N+TEL+GEIAGPPDTPYEGG + LEI
Sbjct: 18 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 77
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
K+PETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAA
Sbjct: 78 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 137
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
EPDDPQDAVVA QYK+NPEMF TAR W +VYAG P +P++ KI+ L MG +
Sbjct: 138 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI 197
Query: 181 VALSTYNWELERATEAIFT 199
VALS+ +W++E ATE + +
Sbjct: 198 VALSSKSWDVETATELLLS 216
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 287 bits (734), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 144/199 (72%), Positives = 170/199 (85%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
MANIA QRIKREFKEV+KSEE +K IK++L+D+N+TEL+GEIAGPPDTPYEGG + LEI
Sbjct: 3 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 62
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
K+PETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAA
Sbjct: 63 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 122
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
EPDDPQDAVVA QYK+NPEMF TAR W +VYAG P +P++ KI+ L MG +
Sbjct: 123 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI 182
Query: 181 VALSTYNWELERATEAIFT 199
VALS+ +W++E ATE + +
Sbjct: 183 VALSSKSWDVETATELLLS 201
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 286 bits (733), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 144/199 (72%), Positives = 170/199 (85%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
MANIA QRIKREFKEV+KSEE +K IK++L+D+N+TEL+GEIAGPPDTPYEGG + LEI
Sbjct: 2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 61
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
K+PETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAA
Sbjct: 62 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 121
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
EPDDPQDAVVA QYK+NPEMF TAR W +VYAG P +P++ KI+ L MG +
Sbjct: 122 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI 181
Query: 181 VALSTYNWELERATEAIFT 199
VALS+ +W++E ATE + +
Sbjct: 182 VALSSKSWDVETATELLLS 200
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 285 bits (728), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 143/199 (71%), Positives = 169/199 (84%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
MANIA QRIKREFKEV+KSEE +K IK++L+D+N+TEL+GEIAGPPDTPYEGG + LEI
Sbjct: 54 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 113
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
K+PETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAA
Sbjct: 114 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 173
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
EPDDPQDAVVA QYK+NPEMF TAR W +VYAG P +P++ KI+ L G +
Sbjct: 174 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAAGFDRNAVI 233
Query: 181 VALSTYNWELERATEAIFT 199
VALS+ +W++E ATE + +
Sbjct: 234 VALSSKSWDVETATELLLS 252
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 255 bits (651), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 128/155 (82%), Positives = 143/155 (92%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
MANIA QRIKREFKEV+KSEE +K IK++L+D+N+TEL+GEIAGPPDTPYEGG + LEI
Sbjct: 5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 64
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
K+PETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAA
Sbjct: 65 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 124
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGG 155
EPDDPQDAVVA QYK+NPEMF TAR W +VYAG
Sbjct: 125 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 159
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 191 bits (485), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/181 (51%), Positives = 127/181 (70%), Gaps = 4/181 (2%)
Query: 8 RIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYP 67
R+++E K+ I++E V + I + D N+ E G I GP TPYEGG+F L I +P YP
Sbjct: 27 RLQKELKD-IENENVQE--IDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYP 83
Query: 68 FNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQD 127
+NPPK+KF+TKIWHPNISS TGAICLD+LK++W+ A+T+RT LLS+QAL++ +PDDPQD
Sbjct: 84 YNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQD 143
Query: 128 AVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYN 187
A VAK YKEN +F TA WT +A GP + P + I+++T+MG A+ AL N
Sbjct: 144 AEVAKMYKENHALFVKTASVWTKTFATGPKEEPR-EVIIKKITEMGFSEDQAKNALIKAN 202
Query: 188 W 188
W
Sbjct: 203 W 203
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 162 bits (410), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 120/193 (62%), Gaps = 4/193 (2%)
Query: 6 AQRIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
+ R KR KE+ ++ I LE + + + LKG GPP TPYEGG FV++I+VP
Sbjct: 1 SSRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPM 60
Query: 65 TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
YPF PPK++F TK++HPNISSVTGAICLDIL++ W+ +TL++ L+SLQAL+ + EP+D
Sbjct: 61 EYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPND 120
Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALS 184
PQDA VA+ Y + E F TA WT +YA S + + +D+ + HD
Sbjct: 121 PQDAEVAQHYLRDRESFNKTAALWTRLYASETSNGQKGNVE---ESDLYGIDHDLIDEFE 177
Query: 185 TYNWELERATEAI 197
+ +E ++ E +
Sbjct: 178 SQGFEKDKIVEVL 190
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 162 bits (409), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/148 (52%), Positives = 103/148 (69%), Gaps = 1/148 (0%)
Query: 8 RIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
R KR KE+ ++ I LE + + + LKG GPP TPYEGG FV++I+VP Y
Sbjct: 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 61
Query: 67 PFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQ 126
PF PPK++F TK++HPNISSVTGAICLDILK+ W+ +TL++ L+SLQAL+ + EP+DPQ
Sbjct: 62 PFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQ 121
Query: 127 DAVVAKQYKENPEMFTLTARHWTNVYAG 154
DA VA+ Y + E F TA WT +YA
Sbjct: 122 DAEVAQHYLRDRESFNKTAALWTRLYAS 149
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 73/147 (49%), Positives = 99/147 (67%)
Query: 7 QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
Q+++R + + +++ + +G IAGP TPYEGG+F L+I +P Y
Sbjct: 45 QQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDY 104
Query: 67 PFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQ 126
P+NPPK+KF+TKIWHPNISS TGAICLDILK +W+ A+T+RT LLS+QA++A P DPQ
Sbjct: 105 PYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQ 164
Query: 127 DAVVAKQYKENPEMFTLTARHWTNVYA 153
DA VAK EN +F TA+ WT +A
Sbjct: 165 DAEVAKMMIENHPLFVQTAKLWTETFA 191
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 95/149 (63%), Gaps = 4/149 (2%)
Query: 7 QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
+RI +E + + A+ + +NY I GP TPYEGG + LE+ +PE Y
Sbjct: 4 RRITKETQNLANEPPPGIMAVP---VPENYRHFNILINGPDGTPYEGGTYKLELFLPEQY 60
Query: 67 PFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQ 126
P PPKV+FLTKI+HPNI + G ICLDILKD+W+ A+ +RTVLLS+QAL+++ EPDDP
Sbjct: 61 PMEPPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPL 119
Query: 127 DAVVAKQYKENPEMFTLTARHWTNVYAGG 155
D+ VA+ +K++ AR W +YA
Sbjct: 120 DSKVAEHFKQDKNDAEHVARQWNKIYANN 148
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 95/149 (63%), Gaps = 4/149 (2%)
Query: 7 QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
+RI +E + + A+ + +NY I GP TPYEGG + LE+ +PE Y
Sbjct: 4 RRITKETQNLANEPPPGIMAVP---VPENYRHFNILINGPDGTPYEGGTYKLELFLPEQY 60
Query: 67 PFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQ 126
P PPKV+FLTKI+HPNI + G ICLDILKD+W+ A+ +RTVLLS+QAL+++ EPDDP
Sbjct: 61 PMEPPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPL 119
Query: 127 DAVVAKQYKENPEMFTLTARHWTNVYAGG 155
D+ VA+ +K++ AR W +YA
Sbjct: 120 DSKVAEHFKQDKNDAEHVARQWNKIYANN 148
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/147 (48%), Positives = 98/147 (66%), Gaps = 4/147 (2%)
Query: 7 QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
+RI +E + ++ +E V IK E + N IAGP D+P+EGG F LE+ +PE Y
Sbjct: 8 RRIIKETQRLL-AEPVP--GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 64
Query: 67 PFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQ 126
P PKV+F+TKI+HPN+ + G ICLDILKD+W+ A+ +RTVLLS+QAL++A PDDP
Sbjct: 65 PMAAPKVRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 123
Query: 127 DAVVAKQYKENPEMFTLTARHWTNVYA 153
VA+Q+K N TAR WT +YA
Sbjct: 124 ANDVAEQWKTNEAQAIETARAWTRLYA 150
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 72/147 (48%), Positives = 98/147 (66%), Gaps = 4/147 (2%)
Query: 7 QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
+RI +E + ++ +E V IK E + N IAGP D+P+EGG F LE+ +PE Y
Sbjct: 9 RRIIKETQRLL-AEPVP--GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 65
Query: 67 PFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQ 126
P PKV+F+TKI+HPN+ + G ICLDILKD+W+ A+ +RTVLLS+QAL++A PDDP
Sbjct: 66 PMAAPKVRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 124
Query: 127 DAVVAKQYKENPEMFTLTARHWTNVYA 153
VA+Q+K N TAR WT +YA
Sbjct: 125 ANDVAEQWKTNEAQAIETARAWTRLYA 151
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 134 bits (336), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 72/147 (48%), Positives = 98/147 (66%), Gaps = 4/147 (2%)
Query: 7 QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
+RI +E + ++ +E V IK E + N IAGP D+P+EGG F LE+ +PE Y
Sbjct: 11 RRIIKETQRLL-AEPVP--GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 67
Query: 67 PFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQ 126
P PKV+F+TKI+HPN+ + G ICLDILKD+W+ A+ +RTVLLS+QAL++A PDDP
Sbjct: 68 PMAAPKVRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 126
Query: 127 DAVVAKQYKENPEMFTLTARHWTNVYA 153
VA+Q+K N TAR WT +YA
Sbjct: 127 ANDVAEQWKTNEAQAIETARAWTRLYA 153
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 134 bits (336), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 72/147 (48%), Positives = 98/147 (66%), Gaps = 4/147 (2%)
Query: 7 QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
+RI +E + ++ +E V IK E + N IAGP D+P+EGG F LE+ +PE Y
Sbjct: 6 RRIIKETQRLL-AEPVP--GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 62
Query: 67 PFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQ 126
P PKV+F+TKI+HPN+ + G ICLDILKD+W+ A+ +RTVLLS+QAL++A PDDP
Sbjct: 63 PMAAPKVRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121
Query: 127 DAVVAKQYKENPEMFTLTARHWTNVYA 153
VA+Q+K N TAR WT +YA
Sbjct: 122 ANDVAEQWKTNEAQAIETARAWTRLYA 148
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 134 bits (336), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 72/147 (48%), Positives = 98/147 (66%), Gaps = 4/147 (2%)
Query: 7 QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
+RI +E + ++ +E V IK E + N IAGP D+P+EGG F LE+ +PE Y
Sbjct: 4 RRIIKETQRLL-AEPVP--GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 60
Query: 67 PFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQ 126
P PKV+F+TKI+HPN+ + G ICLDILKD+W+ A+ +RTVLLS+QAL++A PDDP
Sbjct: 61 PMAAPKVRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 119
Query: 127 DAVVAKQYKENPEMFTLTARHWTNVYA 153
VA+Q+K N TAR WT +YA
Sbjct: 120 ANDVAEQWKTNEAQAIETARAWTRLYA 146
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 133 bits (335), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 92/152 (60%), Gaps = 4/152 (2%)
Query: 2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
A +A +RI++E +E+ ++ C + D+ I GP D+PY+GG F L++
Sbjct: 2 AAMAMRRIQKELREI---QQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVH 58
Query: 62 VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAE 121
P YPF P+V F+TK++HPNI+ G ICLDILKDQW+ A+TL VLLS+ +L+
Sbjct: 59 FPVDYPFKAPRVTFMTKVYHPNINK-NGVICLDILKDQWSPALTLSRVLLSISSLLTDPN 117
Query: 122 PDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
P DP D VA + N + F TAR WT +YA
Sbjct: 118 PSDPLDPEVANVLRANKKQFEDTAREWTRMYA 149
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 96/153 (62%), Gaps = 4/153 (2%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
M ++A +RI++E ++ ++ + A+C+ + D+ + I GP D+PY+GG F L I
Sbjct: 3 MGSMALKRIQKELQD-LQRDPPAQCSAGP--VGDDLFHWQATIMGPSDSPYQGGVFFLTI 59
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
P YPF PPKV F TKI+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+
Sbjct: 60 HFPTDYPFKPPKVAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDP 118
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
PDDP +A YK + E + AR WT YA
Sbjct: 119 NPDDPLVPDIAHIYKSDKEKYNRLAREWTQKYA 151
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 90/150 (60%), Gaps = 4/150 (2%)
Query: 4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
+A +RI RE ++ K + A + D+ + I GP D+PY GG F L I P
Sbjct: 1 MALKRINRELADLGKDPPSSSSAGP---VGDDLFHWQATIMGPADSPYAGGVFFLSIHFP 57
Query: 64 ETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD 123
YPF PPKV F T+I+HPNI+S G+ICLDIL+DQW+ A+T+ VLLS+ +L+ PD
Sbjct: 58 TDYPFKPPKVNFTTRIYHPNINS-NGSICLDILRDQWSPALTISKVLLSISSLLTDPNPD 116
Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
DP +A YK + + L+AR WT YA
Sbjct: 117 DPLVPEIAHVYKTDRSRYELSAREWTRKYA 146
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 130 bits (328), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 98/152 (64%), Gaps = 4/152 (2%)
Query: 2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
+++A +RI++E +++ + + A+C+ + D+ + I GPP++PY+GG F L I
Sbjct: 2 SHMALKRIQKELQDLGR-DPPAQCSAGP--VGDDLFHWQATIMGPPESPYQGGVFFLTIH 58
Query: 62 VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAE 121
P YPF PPKV F T+I+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+
Sbjct: 59 FPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPN 117
Query: 122 PDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
PDDP +A+ YK + E + AR WT YA
Sbjct: 118 PDDPLVPEIARIYKTDRERYNQLAREWTQKYA 149
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 130 bits (327), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 95/153 (62%), Gaps = 4/153 (2%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
M ++A +RI +E ++ + + A+C+ + D+ + I GP D+PY+GG F L I
Sbjct: 3 MGSMALKRIHKELNDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTI 59
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
P YPF PPKV F T+I+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+
Sbjct: 60 HFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDP 118
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
PDDP +A+ YK + E + AR WT YA
Sbjct: 119 NPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 151
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 89/149 (59%), Gaps = 4/149 (2%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
A +RI +E ++ K + C+ + D+ + I GP D+PY GG F L I P
Sbjct: 22 ALKRINKELNDLSK-DPPTNCSAGP--VGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPS 78
Query: 65 TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
YPF PPKV F TKI+HPNI+S GAICLDILKDQW+ A+T+ VLLS+ +L+ PDD
Sbjct: 79 DYPFKPPKVNFTTKIYHPNINS-QGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDD 137
Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYA 153
P +A YK + + TAR W+ YA
Sbjct: 138 PLVPEIAHLYKSDRMRYDQTAREWSQKYA 166
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 94/153 (61%), Gaps = 4/153 (2%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
M +A +RI++E + ++ + A C+ + D+ + I GPPD+ Y+GG F L +
Sbjct: 4 MLEMALKRIQKELSD-LQRDPPAHCSAGP--VGDDLFHWQATIMGPPDSAYQGGVFFLTV 60
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
P YPF PPK+ F TKI+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+
Sbjct: 61 HFPTDYPFKPPKIAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDP 119
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
PDDP +A+ YK + E + AR WT YA
Sbjct: 120 NPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYA 152
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 95/153 (62%), Gaps = 4/153 (2%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
M ++A +RI +E ++ + + A+C+ + D+ + I GP D+PY+GG F L I
Sbjct: 8 MNSMALKRIHKELNDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTI 64
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
P YPF PPKV F T+I+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+
Sbjct: 65 HFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDP 123
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
PDDP +A+ Y+ + E + AR WT YA
Sbjct: 124 NPDDPLVPEIARIYQTDREKYNRIAREWTQKYA 156
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 94/152 (61%), Gaps = 4/152 (2%)
Query: 2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
++A +RI +E ++ + + A+C+ + D+ + I GP D+PY+GG F L I
Sbjct: 17 GSMALKRIHKELNDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTIH 73
Query: 62 VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAE 121
P YPF PPKV F T+I+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+
Sbjct: 74 FPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPN 132
Query: 122 PDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
PDDP +A+ YK + E + AR WT YA
Sbjct: 133 PDDPLVPEIARIYKTDREKYNRIAREWTQKYA 164
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 94/152 (61%), Gaps = 4/152 (2%)
Query: 2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
++A +RI++E + ++ + A C+ + D+ + I GPPD+ Y+GG F L +
Sbjct: 17 GSMALKRIQKELSD-LQRDPPAHCSAGP--VGDDLFHWQATIMGPPDSAYQGGVFFLTVH 73
Query: 62 VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAE 121
P YPF PPK+ F TKI+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+
Sbjct: 74 FPTDYPFKPPKIAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDPN 132
Query: 122 PDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
PDDP +A+ YK + E + AR WT YA
Sbjct: 133 PDDPLVPDIAQIYKSDKEKYNRHAREWTQKYA 164
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 94/152 (61%), Gaps = 4/152 (2%)
Query: 2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
++A +RI +E ++ + + A+C+ + D+ + I GP D+PY+GG F L I
Sbjct: 1 GSMALKRIHKELNDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTIH 57
Query: 62 VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAE 121
P YPF PPKV F T+I+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+
Sbjct: 58 FPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPN 116
Query: 122 PDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
PDDP +A+ YK + E + AR WT YA
Sbjct: 117 PDDPLVPEIARIYKTDREKYNRIAREWTQKYA 148
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 95/153 (62%), Gaps = 4/153 (2%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
M ++A +RI +E ++ + + A+C+ + D+ + I GP D+PY+GG F L I
Sbjct: 8 MNSMALKRINKELSDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTI 64
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
P YPF PPKV F T+I+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+
Sbjct: 65 HFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDP 123
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
PDDP +A+ YK + + + +R WT YA
Sbjct: 124 NPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 156
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 93/150 (62%), Gaps = 4/150 (2%)
Query: 4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
+A +RI +E ++ + + A+C+ + D+ + I GP D+PY+GG F L I P
Sbjct: 1 MALKRIHKELNDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 57
Query: 64 ETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD 123
YPF PPKV F T+I+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+ PD
Sbjct: 58 TDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPD 116
Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
DP +A+ YK + E + AR WT YA
Sbjct: 117 DPLVPEIARIYKTDREKYNRIAREWTQKYA 146
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 127 bits (319), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 93/150 (62%), Gaps = 4/150 (2%)
Query: 4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
+A +RI++E + ++ + A C+ + D+ + I GPPD+ Y+GG F L + P
Sbjct: 3 MALKRIQKELSD-LQRDPPAHCSAGP--VGDDLFHWQATIMGPPDSAYQGGVFFLTVHFP 59
Query: 64 ETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD 123
YPF PPK+ F TKI+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+ PD
Sbjct: 60 TDYPFKPPKIAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPD 118
Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
DP +A+ YK + E + AR WT YA
Sbjct: 119 DPLVPDIAQIYKSDKEKYNRHAREWTQKYA 148
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 127 bits (319), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 93/150 (62%), Gaps = 4/150 (2%)
Query: 4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
+A +RI +E ++ + + A+C+ + D+ + I GP D+PY+GG F L I P
Sbjct: 3 MALKRIHKELNDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 59
Query: 64 ETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD 123
YPF PPKV F T+I+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+ PD
Sbjct: 60 TDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPD 118
Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
DP +A+ YK + E + AR WT YA
Sbjct: 119 DPLVPEIARIYKTDREKYNRIAREWTQKYA 148
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 127 bits (319), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 88/149 (59%), Gaps = 4/149 (2%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
+++RI +E ++ E + + D+ + I GP D+PY GG F L I P
Sbjct: 3 SSKRIAKELSDL---ERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPT 59
Query: 65 TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
YPF PPK+ F TKI+HPNI++ G ICLDILKDQW+ A+TL VLLS+ +L+ A PDD
Sbjct: 60 DYPFKPPKISFTTKIYHPNINA-NGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDD 118
Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYA 153
P +A YK + + TAR WT YA
Sbjct: 119 PLVPEIAHIYKTDRPKYEATAREWTKKYA 147
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 127 bits (319), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 92/150 (61%), Gaps = 4/150 (2%)
Query: 4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
+A +RI +E ++ + + A+C+ + D+ + I GP D+PY+GG F L I P
Sbjct: 3 MALKRIHKELNDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 59
Query: 64 ETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD 123
YPF PPKV F T+I+HPNI+S G+ICLDIL+ QW A+T+ VLLS+ +L+ PD
Sbjct: 60 TDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWGPALTISKVLLSICSLLCDPNPD 118
Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
DP +A+ YK + E + AR WT YA
Sbjct: 119 DPLVPEIARIYKTDREKYNRIAREWTQKYA 148
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 94/154 (61%), Gaps = 4/154 (2%)
Query: 4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
+A +RI +E ++ + + A+C+ + D+ + I GP D+PY+GG F L I P
Sbjct: 3 MALKRIHKELNDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 59
Query: 64 ETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD 123
YPF PPKV F T+I+HPNI+S G+I LDIL+ QW+ A+T+ VLLS+ +L+ PD
Sbjct: 60 TDYPFKPPKVAFTTRIYHPNINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPD 118
Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPS 157
DP +A+ YK + E + AR WT YA G S
Sbjct: 119 DPLVPEIARIYKTDREKYNRIAREWTQKYAMGGS 152
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 125 bits (314), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 93/150 (62%), Gaps = 4/150 (2%)
Query: 4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
+A +RI +E ++ + + A+C+ + D+ + I GP D+PY+GG F L I P
Sbjct: 9 MALKRINKELSDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 65
Query: 64 ETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD 123
YPF PPKV F T+I+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+ PD
Sbjct: 66 TDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPD 124
Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
DP +A+ YK + + + +R WT YA
Sbjct: 125 DPLVPEIARIYKTDRDKYNRISREWTQKYA 154
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 92/150 (61%), Gaps = 4/150 (2%)
Query: 4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
+A +RI +E ++ + + A+C+ + D+ + I GP D+PY+GG F L I P
Sbjct: 3 MALKRIHKELNDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 59
Query: 64 ETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD 123
YPF PPKV F T+I+HPNI+S G+ICLD L+ QW+ A+T+ VLLS+ +L+ PD
Sbjct: 60 TDYPFKPPKVAFTTRIYHPNINS-NGSICLDALRSQWSPALTISKVLLSICSLLCDPNPD 118
Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
DP +A+ YK + E + AR WT YA
Sbjct: 119 DPLVPEIARIYKTDREKYNRIAREWTQKYA 148
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 92/150 (61%), Gaps = 4/150 (2%)
Query: 4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
+A +RI +E ++ + + A+C+ + D+ + GP D+PY+GG F L I P
Sbjct: 3 MALKRIHKELNDLAR-DPPAQCSAGP--VGDDMFHWQATAMGPNDSPYQGGVFFLTIHFP 59
Query: 64 ETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD 123
YPF PPKV F T+I+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+ PD
Sbjct: 60 TDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPD 118
Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
DP +A+ YK + E + AR WT YA
Sbjct: 119 DPLVPEIARIYKTDREKYNRIAREWTQKYA 148
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 92/149 (61%), Gaps = 4/149 (2%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
A +RI +E ++ + + A+C+ + D+ + I GP D+PY+GG F L I P
Sbjct: 4 ALKRINKELSDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 60
Query: 65 TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
YPF PPKV F T+I+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+ PDD
Sbjct: 61 DYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 119
Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYA 153
P +A+ YK + + + +R WT YA
Sbjct: 120 PLVPEIARIYKTDRDKYNRISREWTQKYA 148
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 92/149 (61%), Gaps = 4/149 (2%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
A +RI +E ++ + + A+C+ + D+ + I GP D+PY+GG F L I P
Sbjct: 1 ALKRINKELSDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 57
Query: 65 TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
YPF PPKV F T+I+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+ PDD
Sbjct: 58 DYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 116
Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYA 153
P +A+ YK + + + +R WT YA
Sbjct: 117 PLVPEIARIYKTDRDKYNRISREWTQKYA 145
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 93/152 (61%), Gaps = 4/152 (2%)
Query: 2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
++A +RI +E ++ + + A+C+ + D+ + I GP D+PY+GG F L I
Sbjct: 2 GSMALKRIHKELNDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTIH 58
Query: 62 VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAE 121
P YPF PPKV F T+I+HPNI+S G+I LDIL+ QW+ A+T+ VLLS+ +L+
Sbjct: 59 FPTDYPFKPPKVAFTTRIYHPNINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPN 117
Query: 122 PDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
PDDP +A+ YK + E + AR WT YA
Sbjct: 118 PDDPLVPEIARIYKTDREKYNRIAREWTQKYA 149
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 124 bits (310), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 93/152 (61%), Gaps = 4/152 (2%)
Query: 2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
++A +RI +E ++ + + A+C+ + D+ + I GP D+PY+GG F L I
Sbjct: 17 GSMALKRIHKELNDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTIH 73
Query: 62 VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAE 121
P YPF PPKV F T+I+HPNI+S G+I LDIL+ QW+ A+T+ VLLS+ +L+
Sbjct: 74 FPTDYPFKPPKVAFTTRIYHPNINS-NGSIXLDILRSQWSPALTISKVLLSICSLLCDPN 132
Query: 122 PDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
PDDP +A+ YK + E + AR WT YA
Sbjct: 133 PDDPLVPEIARIYKTDREKYNRIAREWTQKYA 164
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 123 bits (309), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 93/152 (61%), Gaps = 4/152 (2%)
Query: 2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
++A +RI++E + ++ + A C + + D+ + I GPPD+ Y+GG F L +
Sbjct: 5 GSMALKRIQKELSD-LQRDPPAHC--RAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVH 61
Query: 62 VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAE 121
P YPF PPK+ F TKI+HPNI+S G+I LDIL+ QW+ A+T+ VLLS+ +L+
Sbjct: 62 FPTDYPFKPPKIAFTTKIYHPNINS-NGSIKLDILRSQWSPALTVSKVLLSICSLLCDPN 120
Query: 122 PDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
PDDP +A+ YK + E + AR WT YA
Sbjct: 121 PDDPLVPDIAQIYKSDKEKYNRHAREWTQKYA 152
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 89/149 (59%), Gaps = 1/149 (0%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
AA KR KE K I E DDN + I GP +PYE G F LE+ +P+
Sbjct: 3 AASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 62
Query: 65 TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
YP PKV+FLTKI+HPNI + G ICLD+LK W+ A+ +RTVLLS+QAL+A+ P+D
Sbjct: 63 DYPMEAPKVRFLTKIYHPNIDRL-GRICLDVLKTNWSPALQIRTVLLSIQALLASPNPND 121
Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYA 153
P VA+ + +N + AR WT +YA
Sbjct: 122 PLANDVAEDWIKNEQGAKAKAREWTKLYA 150
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 91/149 (61%), Gaps = 4/149 (2%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
A++RI +E ++ + + A+C+ + D+ + I GP D+PY+GG F L I P
Sbjct: 1 ASKRIHKELNDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 57
Query: 65 TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
YPF PPKV F T+I+HPNI+S G+I LDIL+ QW+ A+ + VLLS+ +L+ PDD
Sbjct: 58 DYPFKPPKVAFTTRIYHPNINS-NGSISLDILRSQWSPALKISKVLLSICSLLCDPNPDD 116
Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYA 153
P +A+ YK + E + AR WT YA
Sbjct: 117 PLVPEIARIYKTDREKYNRIAREWTQKYA 145
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 92/150 (61%), Gaps = 4/150 (2%)
Query: 4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
+A +RI +E ++ + + A+C+ + D+ + I GP D+PY+GG F L I P
Sbjct: 1 MALKRINKELSDLAR-DPPAQCSAGP--VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 57
Query: 64 ETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD 123
YPF PPKV F T+I+HPNI+S G+I LDIL+ QW+ A+T+ VLLS+ +L+ PD
Sbjct: 58 TDYPFKPPKVAFTTRIYHPNINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPD 116
Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
DP +A+ YK + + + +R WT YA
Sbjct: 117 DPLVPEIARIYKTDRDKYNRISREWTQKYA 146
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 87/144 (60%), Gaps = 1/144 (0%)
Query: 10 KREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFN 69
KR KE K I E DDN + I GP +PYE G F LE+ +P+ YP
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 70 PPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAV 129
PKV+FLTKI+HPNI + G ICLD+LK W+ A+ +RTVLLS+QAL+A+ P+DP
Sbjct: 66 APKVRFLTKIYHPNIDRL-GRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLAND 124
Query: 130 VAKQYKENPEMFTLTARHWTNVYA 153
VA+ + +N + AR WT +YA
Sbjct: 125 VAEDWIKNEQGAKAKAREWTKLYA 148
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 91/150 (60%), Gaps = 4/150 (2%)
Query: 4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
+A +RI +E ++ + + A+C + + D+ + I GP D+PY+GG F L I P
Sbjct: 1 MALKRIHKELNDLAR-DPPAQC--RAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 57
Query: 64 ETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD 123
YPF PPKV F T+I+HP I+S G+I LDIL+ QW+ A+T+ VLLS+ +L+ PD
Sbjct: 58 TDYPFKPPKVAFTTRIYHPAINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPD 116
Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
DP +A+ YK + E + AR WT YA
Sbjct: 117 DPLVPEIARIYKTDREKYNRIAREWTQKYA 146
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
Query: 2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
+ +A+RI++E E I + C+ + DN E + I GPP + YEGG F L+I
Sbjct: 1 GSTSAKRIQKELAE-ITLDPPPNCSAGPK--GDNIYEWRSTILGPPGSVYEGGVFFLDIT 57
Query: 62 VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAE 121
YPF PPKV F T+I+H NI+S G ICLDILKD W+ A+T+ VLLS+ +L+
Sbjct: 58 FSPDYPFKPPKVTFRTRIYHCNINS-QGVICLDILKDNWSPALTISKVLLSICSLLTDCN 116
Query: 122 PDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
P DP +A QY N AR WT YA
Sbjct: 117 PADPLVGSIATQYMTNRAEHDRMARQWTKRYA 148
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 86/144 (59%), Gaps = 1/144 (0%)
Query: 10 KREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFN 69
KR KE K I E DDN + I GP +PYE G F LE+ +P+ YP
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 70 PPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAV 129
PKV+FLTKI+HPNI + G I LD+LK W+ A+ +RTVLLS+QAL+A+ P+DP
Sbjct: 66 APKVRFLTKIYHPNIDRL-GRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLAND 124
Query: 130 VAKQYKENPEMFTLTARHWTNVYA 153
VA+ + +N + AR WT +YA
Sbjct: 125 VAEDWIKNEQGAKAKAREWTKLYA 148
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 116 bits (291), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 87/153 (56%), Gaps = 4/153 (2%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
+ + +A+RI++E + I + C+ + DN E + I GPP + YEGG F L+I
Sbjct: 45 LLSTSAKRIQKELAD-ITLDPPPNCSAGPK--GDNIYEWRSTILGPPGSVYEGGVFFLDI 101
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
YPF PPKV F T+I+H NI+S G ICLDILKD W+ A+T+ VLLS+ +L+
Sbjct: 102 TFTPEYPFKPPKVTFRTRIYHCNINS-QGVICLDILKDNWSPALTISKVLLSICSLLTDC 160
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
P DP +A QY N AR WT YA
Sbjct: 161 NPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 193
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 85/144 (59%), Gaps = 1/144 (0%)
Query: 10 KREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFN 69
KR KE K I E DDN + I GP +PYE G F LE+ +P+ YP
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 70 PPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAV 129
PKV+FLTKI+HP I + G I LD+LK W+ A+ +RTVLLS+QAL+A+ P+DP
Sbjct: 66 APKVRFLTKIYHPAIDRL-GRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLAND 124
Query: 130 VAKQYKENPEMFTLTARHWTNVYA 153
VA+ + +N + AR WT +YA
Sbjct: 125 VAEDWIKNEQGAKAKAREWTKLYA 148
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 113 bits (283), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 77/124 (62%), Gaps = 5/124 (4%)
Query: 34 DNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICL 93
D +L+ +I G +TPYE G F LE+ +PE YPF PP+++FLT I+HPNI S G ICL
Sbjct: 31 DQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSA-GRICL 89
Query: 94 DIL----KDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWT 149
D+L K W ++ + TVL S+Q LM+ PDDP A ++ ++K N F AR WT
Sbjct: 90 DVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWT 149
Query: 150 NVYA 153
+A
Sbjct: 150 EKHA 153
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 99.8 bits (247), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 83/146 (56%), Gaps = 4/146 (2%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
M+ A +R+ R+FK + ++ I D+N I GP DTP++GG F L +
Sbjct: 1 MSTPARKRLMRDFKRL---QQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSL 57
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
+ E YP PP V+F+++++HPNI + G+ICLDIL++QW+ + +L S+Q+L+
Sbjct: 58 QFSEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDP 116
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTAR 146
P+ P ++ A+ Y E+ + R
Sbjct: 117 NPNSPANSEAARMYSESKREYNRRVR 142
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 81/137 (59%), Gaps = 4/137 (2%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
M+ A +R+ R+FK + + V E +N + I GP TP+E G F L I
Sbjct: 1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSE---NNIMQWNAVIFGPEGTPFEDGTFKLVI 57
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
+ E YP PP V+FL+K++HPN+ + G+ICLDIL+++W+ + ++L S+Q+L+
Sbjct: 58 EFSEEYPNKPPTVRFLSKMFHPNVYA-DGSICLDILQNRWSPTYDVSSILTSIQSLLDEP 116
Query: 121 EPDDPQDAVVAKQYKEN 137
P+ P ++ A+ Y+EN
Sbjct: 117 NPNSPANSQAAQLYQEN 133
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 82/137 (59%), Gaps = 4/137 (2%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
M + +R+ R+FK K +E + +DN + I GP +TP+E G F L +
Sbjct: 4 MTTPSRRRLMRDFK---KLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSL 60
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
+ E YP PP VKF++K++HPN+ + G+ICLDIL+++W+ + +L S+Q+L+
Sbjct: 61 EFTEEYPNKPPTVKFISKMFHPNVYA-DGSICLDILQNRWSPTYDVAAILTSIQSLLDEP 119
Query: 121 EPDDPQDAVVAKQYKEN 137
P+ P +++ A+ Y+EN
Sbjct: 120 NPNSPANSLAAQLYQEN 136
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 82/137 (59%), Gaps = 4/137 (2%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
M + +R+ R+FK K +E + +DN + I GP +TP+E G F L +
Sbjct: 1 MTTPSRRRLMRDFK---KLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSL 57
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
+ E YP PP VKF++K++HPN+ + G+ICLDIL+++W+ + +L S+Q+L+
Sbjct: 58 EFTEEYPNKPPTVKFISKMFHPNVYA-DGSICLDILQNRWSPTYDVAAILTSIQSLLDEP 116
Query: 121 EPDDPQDAVVAKQYKEN 137
P+ P +++ A+ Y+EN
Sbjct: 117 NPNSPANSLAAQLYQEN 133
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 77/137 (56%), Gaps = 4/137 (2%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
M+ A +R+ R+FK + +E A + + DN I GP DTPYE G F L +
Sbjct: 1 MSTPARRRLMRDFKRM---KEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLL 57
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
+ E YP PP VKFL++++HPN+ + G ICLDIL+++W + ++L S+Q+L
Sbjct: 58 EFDEEYPNKPPHVKFLSEMFHPNVYA-NGEICLDILQNRWTPTYDVASILTSIQSLFNDP 116
Query: 121 EPDDPQDAVVAKQYKEN 137
P P + A +K++
Sbjct: 117 NPASPANVEAATLFKDH 133
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 73/134 (54%), Gaps = 4/134 (2%)
Query: 6 AQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPET 65
++R+++E + ++ S + A DN + + GP DT YE + L ++ P
Sbjct: 11 SKRLQQELRTLLMSGDPGITAFP---DGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSD 67
Query: 66 YPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDP 125
YP+ PP VKF T WHPN+ +G ICLDILK+ W A+ +RT+LLSLQ+L+ P
Sbjct: 68 YPYKPPVVKFTTPCWHPNVDQ-SGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASP 126
Query: 126 QDAVVAKQYKENPE 139
+A A + E
Sbjct: 127 LNAQAADMWSNQTE 140
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 83/151 (54%), Gaps = 1/151 (0%)
Query: 3 NIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKV 62
N+ I+ +KEV IK+ +++ T+L+ I GP TPY GG F +++ +
Sbjct: 9 NLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLL 68
Query: 63 PETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEP 122
+ +P +PPK FLTKI+HPN+ + G IC+++LK W A + +R VLL+++ L+ P
Sbjct: 69 GKDFPASPPKGYFLTKIFHPNVGA-NGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNP 127
Query: 123 DDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
+ + + EN E + AR T ++
Sbjct: 128 ESALNEEAGRLLLENYEEYAARARLLTEIHG 158
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 45 GPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAM 104
GP TPYEGG + + + +P+ YPF P + F+ KI+HPNI +G +CLD++ W A
Sbjct: 59 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALY 118
Query: 105 TLRTVLLS-LQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
L + S L L+A P DP + A Y PE + + + YA
Sbjct: 119 DLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYA 168
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 83/154 (53%), Gaps = 13/154 (8%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIK----LELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
A++R+ +E EE+ KC +K +++ + N +G I P + PY+ G F +EI
Sbjct: 5 ASRRLMKEL------EEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEI 57
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAA 119
P YPF PPK+ F TKI+HPNI G +CL ++ + W A V+ SL AL+
Sbjct: 58 NFPAEYPFKPPKITFKTKIYHPNIDE-KGQVCLPVISAENWKPATKTDQVIQSLIALVND 116
Query: 120 AEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
+P+ P A +A++Y ++ + F A +T Y
Sbjct: 117 PQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYG 150
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 83/154 (53%), Gaps = 13/154 (8%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIK----LELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
A++R+ +E EE+ KC +K +++ + N +G I P + PY+ G F +EI
Sbjct: 3 ASRRLMKEL------EEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEI 55
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAA 119
P YPF PPK+ F TKI+HPNI G +CL ++ + W A V+ SL AL+
Sbjct: 56 NFPAEYPFKPPKITFKTKIYHPNIDE-KGQVCLPVISAENWKPATKTDQVIQSLIALVND 114
Query: 120 AEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
+P+ P A +A++Y ++ + F A +T Y
Sbjct: 115 PQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYG 148
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 75/136 (55%), Gaps = 5/136 (3%)
Query: 6 AQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPET 65
+R+++E ++ S + A DN + G I G T YE + L ++ P
Sbjct: 32 GKRLQQELMTLMMSGDKGISAFPE---SDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSG 88
Query: 66 YPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDP 125
YP+N P VKFLT +HPN+ + G I LDILK++W+A +RT+LLS+Q+L+ D P
Sbjct: 89 YPYNAPTVKFLTPCYHPNVDT-QGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSP 147
Query: 126 QDAVVAKQYKENPEMF 141
+ A+ +K NP F
Sbjct: 148 LNTHAAELWK-NPTAF 162
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 69/121 (57%), Gaps = 15/121 (12%)
Query: 31 LIDDN-YTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTG 89
LIDDN + I GPPDT YEGG F + P+ YP PPK+KF+T+IWHPN+ G
Sbjct: 41 LIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDK-NG 99
Query: 90 AICLDIL-------------KDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKE 136
+C+ IL +++W T+ T+++S+ +++A D P + AK+++E
Sbjct: 100 DVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWRE 159
Query: 137 N 137
+
Sbjct: 160 D 160
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 75/158 (47%), Gaps = 9/158 (5%)
Query: 8 RIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYP 67
R K KEV + E C K+ D N P + Y+GG F E +VP+ Y
Sbjct: 15 RDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYN 74
Query: 68 FNPPKVKFLTKIWHPNISSVTGAICLDILKDQ------WAAAMTLRTVLLSLQALMA-AA 120
PPKVK LTKIWHPNI+ TG ICL +L++ WA TL+ V+ L +L
Sbjct: 75 MVPPKVKCLTKIWHPNITE-TGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLL 133
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA-GGPS 157
DDP + A+ + + E F + YA GPS
Sbjct: 134 NFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYARSGPS 171
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 72/153 (47%), Gaps = 8/153 (5%)
Query: 8 RIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYP 67
R K KEV + E C K+ D N P + Y+GG F E +VP+ Y
Sbjct: 15 RDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYN 74
Query: 68 FNPPKVKFLTKIWHPNISSVTGAICLDILKDQ------WAAAMTLRTVLLSLQALMA-AA 120
PPKVK LTKIWHPNI+ TG ICL +L++ WA TL+ V+ L +L
Sbjct: 75 MVPPKVKCLTKIWHPNITE-TGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLL 133
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
DDP + A+ + + E F + YA
Sbjct: 134 NFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYA 166
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 15/121 (12%)
Query: 31 LIDDN-YTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTG 89
L+DDN + + + GPPDT YEGG F + P YP PPK+KF+++IWHPNI G
Sbjct: 27 LVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDK-EG 85
Query: 90 AICLDILKD-------------QWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKE 136
+C+ IL D +W T+ T+LLS+ +++ + P + AK +E
Sbjct: 86 NVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRE 145
Query: 137 N 137
N
Sbjct: 146 N 146
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 43 IAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAA 102
+ P + Y+ G FV KV + YP +PPKVK T ++HPNI + G +CL+IL++ W
Sbjct: 40 VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNI-DLEGNVCLNILREDWKP 98
Query: 103 AMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMF 141
+T+ +++ LQ L P+DP + A+ + N +F
Sbjct: 99 VLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLF 137
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 76/143 (53%), Gaps = 11/143 (7%)
Query: 1 MANIAAQRIKREFKEVIKS----EEVAK----CAIKLELIDD-NYTELKGEIAGPPDTPY 51
MA+ RI +E+K ++K+ + +A L ID+ + ++ + I+GP DTPY
Sbjct: 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62
Query: 52 EGGNFVLEIKVPETYPFNPPKVKFL-TKIWHPNISSVTGAICLDILK-DQWAAAMTLRTV 109
E F + I+VP +YP NPPK+ F+ I H N+ S TG ICL+ILK ++W L
Sbjct: 63 ENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILKPEEWTPVWDLLHC 122
Query: 110 LLSLQALMAAAEPDDPQDAVVAK 132
+ ++ L+ D P D +
Sbjct: 123 VHAVWRLLREPVSDSPLDVDIGN 145
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 63/111 (56%), Gaps = 17/111 (15%)
Query: 43 IAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDIL------ 96
I GPP+T YEGG F +K P YP++PP +FLTK+WHPNI TG +C+ IL
Sbjct: 44 IFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYE-TGDVCISILHPPVDD 102
Query: 97 -------KDQWAAAMTLRTVLLSLQALMAAAEPDDPQD---AVVAKQYKEN 137
++W +RT+LLS+ +L+ P + +V+ +++KE+
Sbjct: 103 PQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKES 153
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 63/111 (56%), Gaps = 17/111 (15%)
Query: 43 IAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDIL------ 96
I GPP+T YEGG F +K P YP++PP +FLTK+WHPNI TG +C+ IL
Sbjct: 41 IFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYE-TGDVCISILHPPVDD 99
Query: 97 -------KDQWAAAMTLRTVLLSLQALMAAAEPDDPQD---AVVAKQYKEN 137
++W +RT+LLS+ +L+ P + +V+ +++KE+
Sbjct: 100 PQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKES 150
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 76/143 (53%), Gaps = 11/143 (7%)
Query: 1 MANIAAQRIKREFKEVIKS----EEVAK----CAIKLELIDD-NYTELKGEIAGPPDTPY 51
MA+ RI +E+K ++K+ + +A L ID+ + ++ + I+GP DTPY
Sbjct: 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62
Query: 52 EGGNFVLEIKVPETYPFNPPKVKFL-TKIWHPNISSVTGAICLDILK-DQWAAAMTLRTV 109
E F + I+VP +YP NPPK+ F+ I H N+ S TG ICL+ILK ++W L
Sbjct: 63 ENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHC 122
Query: 110 LLSLQALMAAAEPDDPQDAVVAK 132
+ ++ L+ D P D +
Sbjct: 123 VHAVWRLLREPVCDSPLDVDIGN 145
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 11/142 (7%)
Query: 1 MANIAAQRIKREFKEVIKS----EEVAK----CAIKLELIDD-NYTELKGEIAGPPDTPY 51
MA+ RI +E+K ++K+ + +A L ID+ + ++ + I+GP DTPY
Sbjct: 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62
Query: 52 EGGNFVLEIKVPETYPFNPPKVKFL-TKIWHPNISSVTGAICLDILK-DQWAAAMTLRTV 109
E F + I+VP +YP NPPK+ F+ I H N+ S TG ICL+ILK ++W L
Sbjct: 63 ENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHC 122
Query: 110 LLSLQALMAAAEPDDPQDAVVA 131
+ ++ L+ D P D +
Sbjct: 123 VHAVWRLLREPVCDSPLDVDIG 144
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 34 DNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICL 93
D E E GP TPYE G ++L +++P YPF P + F +I HPN+ +G++CL
Sbjct: 35 DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCL 94
Query: 94 DILKDQWAAAMTLRTVL-LSLQALMAAAEPDDPQDAVVAK 132
D++ W L + + L L+ P DP + A
Sbjct: 95 DVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAH 134
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Query: 29 LELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVT 88
LEL + + + GP T YEGG + + + +P+ YPF P + F+ K+ HPN+ +
Sbjct: 21 LELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEAS 80
Query: 89 GAICLDILKDQWAAAMTLRTVL-LSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARH 147
G++CLD++ W +L V + L L+ P DP ++ A ++ ++ +
Sbjct: 81 GSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKE 140
Query: 148 WTNVYA 153
+ +YA
Sbjct: 141 YVKLYA 146
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 43 IAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAA 102
+ P + Y+ G FV KV + YP +PPKVK T ++HPNI + G + L+IL++ W
Sbjct: 60 VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNI-DLEGNVALNILREDWKP 118
Query: 103 AMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMF 141
+T+ +++ LQ L P+DP + A+ + N +F
Sbjct: 119 VLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLF 157
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 71/141 (50%), Gaps = 5/141 (3%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIA--GPPDTPYEGGNFVL 58
M+ IA R+ +E K K A+ + D + E A G TP+EGG F L
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 59 EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQAL 116
+ + YP +PPK KF ++HPN++ +G +CL IL++ W A+T++ +LL +Q L
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPLFHPNVAP-SGTVCLSILEEDKDWRPAITIKQILLGIQEL 122
Query: 117 MAAAEPDDPQDAVVAKQYKEN 137
+ DP A Y +N
Sbjct: 123 LNEPNIQDPAQAEAYTIYCQN 143
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIA--GPPDTPYEGGNFVL 58
M+ IA R+ +E K K A+ + D + E A G TP+EGG F L
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 59 EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQAL 116
+ + YP +PPK KF ++HPN+ +G +CL IL++ W A+T++ +LL +Q L
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQEL 122
Query: 117 MAAAEPDDPQDAVVAKQYKEN 137
+ DP A Y +N
Sbjct: 123 LNEPNIQDPAQAEAYTIYCQN 143
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIA--GPPDTPYEGGNFVL 58
M+ IA R+ +E K K A+ + D + E A G TP+EGG F L
Sbjct: 3 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 62
Query: 59 EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQAL 116
+ + YP +PPK KF ++HPN+ +G +CL IL++ W A+T++ +LL +Q L
Sbjct: 63 RMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQEL 121
Query: 117 MAAAEPDDPQDAVVAKQYKEN 137
+ DP A Y +N
Sbjct: 122 LNEPNIQDPAQAEAYTIYCQN 142
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIA--GPPDTPYEGGNFVL 58
M+ IA R+ +E K K A+ + D + E A G TP+EGG F L
Sbjct: 3 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 62
Query: 59 EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQAL 116
+ + YP +PPK KF ++HPN+ +G +CL IL++ W A+T++ +LL +Q L
Sbjct: 63 RMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQEL 121
Query: 117 MAAAEPDDPQDAVVAKQYKEN 137
+ DP A Y +N
Sbjct: 122 LNEPNIQDPAQAEAYTIYCQN 142
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIA--GPPDTPYEGGNFVL 58
M+ IA R+ +E K K A+ + D + E A G TP+EGG F L
Sbjct: 2 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 61
Query: 59 EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQAL 116
+ + YP +PPK KF ++HPN+ +G +CL IL++ W A+T++ +LL +Q L
Sbjct: 62 RMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQEL 120
Query: 117 MAAAEPDDPQDAVVAKQYKEN 137
+ DP A Y +N
Sbjct: 121 LNEPNIQDPAQAEAYTIYCQN 141
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIA--GPPDTPYEGGNFVL 58
M+ IA R+ +E K K A+ + D + E A G TP+EGG F L
Sbjct: 6 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 65
Query: 59 EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQAL 116
+ + YP +PPK KF ++HPN+ +G +CL IL++ W A+T++ +LL +Q L
Sbjct: 66 RMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQEL 124
Query: 117 MAAAEPDDPQDAVVAKQYKEN 137
+ DP A Y +N
Sbjct: 125 LNEPNIQDPAQAEAYTIYCQN 145
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIA--GPPDTPYEGGNFVL 58
M+ IA R+ +E K K A+ + D + E A G TP+EGG F L
Sbjct: 1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60
Query: 59 EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQAL 116
+ + YP +PPK KF ++HPN+ +G +CL IL++ W A+T++ +LL +Q L
Sbjct: 61 RMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQEL 119
Query: 117 MAAAEPDDPQDAVVAKQYKEN 137
+ DP A Y +N
Sbjct: 120 LNEPNIQDPAQAEAYTIYCQN 140
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 5/141 (3%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGE--IAGPPDTPYEGGNFVL 58
M+++ QR++ E K+ K A ++ D + K E I G T + GG + +
Sbjct: 1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPI 60
Query: 59 EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDIL-KDQ-WAAAMTLRTVLLSLQAL 116
++ P YP PPKVKF +HPN+ +G ICL IL +DQ W A+TL+ ++L +Q L
Sbjct: 61 TVEYPNEYPSKPPKVKFPAGFYHPNVYP-SGTICLSILNEDQDWRPAITLKQIVLGVQDL 119
Query: 117 MAAAEPDDPQDAVVAKQYKEN 137
+ + P+ P + + N
Sbjct: 120 LDSPNPNSPAQEPAWRSFSRN 140
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 5/141 (3%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGE--IAGPPDTPYEGGNFVL 58
M+++ QR++ E K+ K A ++ D + K E I G T + GG + +
Sbjct: 3 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPI 62
Query: 59 EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDIL-KDQ-WAAAMTLRTVLLSLQAL 116
++ P YP PPKVKF +HPN+ +G ICL IL +DQ W A+TL+ ++L +Q L
Sbjct: 63 TVEYPNEYPSKPPKVKFPAGFYHPNVYP-SGTICLSILNEDQDWRPAITLKQIVLGVQDL 121
Query: 117 MAAAEPDDPQDAVVAKQYKEN 137
+ + P+ P + + N
Sbjct: 122 LDSPNPNSPAQEPAWRSFSRN 142
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIA--GPPDTPYEGGNFVL 58
M+ IA R+ +E K K A+ + D + E A G TP+EGG F L
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 59 EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQAL 116
+ + YP +PPK KF ++HPN+ +G +CL IL++ W A+T++ +LL +Q L
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQEL 122
Query: 117 MAAAEPDDPQDAVVAKQYKEN 137
+ P A Y +N
Sbjct: 123 LNEPNIQSPAQAEAYTIYCQN 143
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIA--GPPDTPYEGGNFVL 58
M+ IA R+ +E K K A+ + D + E A G TP+EGG F L
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 59 EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQAL 116
+ + YP +PPK KF ++HP + +G +CL IL++ W A+T++ +LL +Q L
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPLFHPQVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQEL 122
Query: 117 MAAAEPDDPQDAVVAKQYKEN 137
+ DP A Y +N
Sbjct: 123 LNEPNIQDPAQAEAYTIYCQN 143
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 84/162 (51%), Gaps = 20/162 (12%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
MA A +R+ E+K++ + A + ++N+ E + I GP DT +E G F +
Sbjct: 6 MAGTALKRLMAEYKQLTLNPPEGIVAGPMN--EENFFEWEALIMGPEDTCFEFGVFPAIL 63
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILK-------------DQWAAAMTLR 107
P YP +PPK++F +++HPNI G +C+ IL ++W+ ++
Sbjct: 64 SFPLDYPLSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVE 122
Query: 108 TVLLSLQALMAAAEPDDPQDAVV--AKQYKENPEMFTLTARH 147
+LLS+ +++ AEP+D A V +K ++++ E F A+
Sbjct: 123 KILLSVVSML--AEPNDESGANVDASKMWRDDREQFYKIAKQ 162
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 84/162 (51%), Gaps = 20/162 (12%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
MA A +R+ E+K++ + A + ++N+ E + I GP DT +E G F +
Sbjct: 3 MAGTALKRLMAEYKQLTLNPPEGIVAGPMN--EENFFEWEALIMGPEDTCFEFGVFPAIL 60
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILK-------------DQWAAAMTLR 107
P YP +PPK++F +++HPNI G +C+ IL ++W+ ++
Sbjct: 61 SFPLDYPLSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVE 119
Query: 108 TVLLSLQALMAAAEPDDPQDAVV--AKQYKENPEMFTLTARH 147
+LLS+ +++ AEP+D A V +K ++++ E F A+
Sbjct: 120 KILLSVVSML--AEPNDESGANVDASKMWRDDREQFYKIAKQ 159
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 84/162 (51%), Gaps = 20/162 (12%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
MA A +R+ E+K++ + A + ++N+ E + I GP DT +E G F +
Sbjct: 4 MAGTALKRLMAEYKQLTLNPPEGIVAGPMN--EENFFEWEALIMGPEDTCFEFGVFPAIL 61
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILK-------------DQWAAAMTLR 107
P YP +PPK++F +++HPNI G +C+ IL ++W+ ++
Sbjct: 62 SFPLDYPLSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVE 120
Query: 108 TVLLSLQALMAAAEPDDPQDAVV--AKQYKENPEMFTLTARH 147
+LLS+ +++ AEP+D A V +K ++++ E F A+
Sbjct: 121 KILLSVVSML--AEPNDESGANVDASKMWRDDREQFYKIAKQ 160
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIA--GPPDTPYEGGNFVL 58
M+ IA R+ +E K K A+ + D + E A G TP+EGG F L
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 59 EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQAL 116
+ + YP +PPK KF ++HPN+ +G +CL IL++ W A+T++ +LL +Q L
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQEL 122
Query: 117 MAAAEPDDPQDAVVAKQYKEN 137
+ P A Y +N
Sbjct: 123 LNEPNIQAPAQAEAYTIYCQN 143
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 8/92 (8%)
Query: 43 IAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQ--W 100
I G P T +EGG + L + PE YP PPK +F ++HPN+ +G +CL IL ++ W
Sbjct: 51 IPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYP-SGTVCLSILNEEEGW 109
Query: 101 AAAMTLRTVLLSLQALMAAAEPDDPQDAVVAK 132
A+T++ +LL +Q L+ DDP A A+
Sbjct: 110 KPAITIKQILLGIQDLL-----DDPNIASPAQ 136
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGE--IAGPPDTPYEGGNFVL 58
M+ IA R+ +E K K A+ + D + E I G TP+EGG F L
Sbjct: 1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60
Query: 59 EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQAL 116
+ + YP +PPK KF ++HPN+ +G + L IL++ W A+T++ +LL +Q L
Sbjct: 61 RMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVXLSILEEDKDWRPAITIKQILLGIQEL 119
Query: 117 MAAAEPDDPQDAVVAKQYKEN 137
+ DP A Y +N
Sbjct: 120 LNEPNIQDPAQAEAYTIYXQN 140
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 43 IAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAA 102
I P + Y G+ + E YP PPKV L KI+HPNI + G +CL+IL++ W+
Sbjct: 69 IVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNID-LKGNVCLNILREDWSP 127
Query: 103 AMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTAR 146
A+ L++++ L L P+DP + AK E + F R
Sbjct: 128 ALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVR 171
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIA--GPPDTPYEGGNFVL 58
M+ IA R+ +E K K A+ + D + E A G TP+EGG F L
Sbjct: 1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60
Query: 59 EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQAL 116
+ + YP +PPK KF ++HPN+ +G + L IL++ W A+T++ +LL +Q L
Sbjct: 61 RMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVSLSILEEDKDWRPAITIKQILLGIQEL 119
Query: 117 MAAAEPDDPQDAVVAKQYKEN 137
+ DP A Y +N
Sbjct: 120 LNEPNIQDPAQAEAYTIYCQN 140
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 20/161 (12%)
Query: 2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
A A +R+ E+K++ + A + ++N+ E + I GP DT +E G F +
Sbjct: 1 AGTALKRLMAEYKQLTLNPPEGIVAGPMN--EENFFEWEALIMGPEDTCFEFGVFPAILS 58
Query: 62 VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILK-------------DQWAAAMTLRT 108
P YP +PPK++F +++HPNI G +C+ IL ++W+ ++
Sbjct: 59 FPLDYPLSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVEK 117
Query: 109 VLLSLQALMAAAEPDDPQDAVV--AKQYKENPEMFTLTARH 147
+LLS+ +++ AEP+D A V +K ++++ E F A+
Sbjct: 118 ILLSVVSML--AEPNDESGANVDASKMWRDDREQFYKIAKQ 156
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 16/131 (12%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
M+ A +R+ +E +++IK A ++N I GPPDTPY G F ++
Sbjct: 1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKS--ENNIFIWDCLIQGPPDTPYADGVFNAKL 58
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLR 107
+ P+ YP +PPK+ F I HPNI G +C+ IL +++W+ ++
Sbjct: 59 EFPKDYPLSPPKLTFTPSILHPNIYP-NGEVCISILHSPGDDPNMYELAEERWSPVQSVE 117
Query: 108 TVLLSLQALMA 118
+LLS+ ++++
Sbjct: 118 KILLSVMSMLS 128
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 46 PPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDIL-KDQWAAAM 104
P PY F L I P YPF PP +KF TKI+HPN+ G ICL I+ + W
Sbjct: 43 PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE-NGQICLPIISSENWKPCT 101
Query: 105 TLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWT 149
VL +L L+ +P +A +NPE+F A +T
Sbjct: 102 KTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFT 146
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 46 PPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDIL-KDQWAAAM 104
P PY F L I P YPF PP +KF TKI+HPN+ G ICL I+ + W
Sbjct: 40 PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE-NGQICLPIISSENWKPCT 98
Query: 105 TLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWT 149
VL +L L+ +P +A +NPE+F A +T
Sbjct: 99 KTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFT 143
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 32 IDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAI 91
+ ++ E + EI G ++ ++G F L I Y + PP VKF+T +HPN+ TG
Sbjct: 48 VSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQP 107
Query: 92 CLDILKD--QWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTAR 146
C+D L + +W TL ++LL+LQ +++ ++P + A+ ++ ++ R
Sbjct: 108 CIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILR 164
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 8 RIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
R+ E ++ K C+ L DD T+ G I GPP + +E + L I Y
Sbjct: 10 RLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNY 69
Query: 67 PFNPPKVKFLTKIWHPNISSVTGAICLDI--LKDQWAAAMTLRTVLLSLQALMAA 119
P +PPKV F++KI P ++ TG + D L+D W A T+ T+LL L+ MA
Sbjct: 70 PDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRD-WKRAYTMETLLLDLRKEMAT 123
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 8 RIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
R+ E ++ K C+ L DD T+ G I GPP + +E + L I Y
Sbjct: 9 RLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNY 68
Query: 67 PFNPPKVKFLTKIWHPNISSVTGAICLDI--LKDQWAAAMTLRTVLLSLQALMAA 119
P +PPKV F++KI P ++ TG + D L+D W A T+ T+LL L+ MA
Sbjct: 69 PDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRD-WKRAYTMETLLLDLRKEMAT 122
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 32 IDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW--HPNISSVTG 89
+ ++ T+ ++ G P T YEG F L K YPF+ P+V F + HP++ S G
Sbjct: 49 VQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYS-NG 107
Query: 90 AICLDILKDQWAAAMTLRTVLLSLQALMA 118
ICL IL + W+ A+++++V LS+ ++++
Sbjct: 108 HICLSILTEDWSPALSVQSVCLSIISMLS 136
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 14/93 (15%)
Query: 43 IAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWH-----PNISSVTGAICLDIL- 96
I GP DTPY G F ++ P+ YP +PP V T H PN+ + G +CL IL
Sbjct: 116 ITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYN-DGKVCLSILN 174
Query: 97 ------KDQW-AAAMTLRTVLLSLQALMAAAEP 122
+++W + VL+S+Q+L+ AEP
Sbjct: 175 TWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEP 207
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
A QR+K+++ + K CA E + N E + GP TPYEGG + ++ P
Sbjct: 15 ATQRLKQDYLRIKKDPVPYICA---EPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPR 71
Query: 65 TYPFNPPKVKFLTKIWHPNIS-SVTGAICL---DILKDQWAAAMTLRTVLLSLQALMAAA 120
+PF PP + +T PN +CL D D W A ++ T+L L + M
Sbjct: 72 EFPFKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEK 127
Query: 121 EP 122
P
Sbjct: 128 GP 129
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 11/131 (8%)
Query: 1 MANIAAQRIKREFKEVIKSEE----VAKCAIKLELIDD---NYTELKGEIAGPPDTPYEG 53
MA ++ R F+ + + EE V + L DD T G I GPP T YE
Sbjct: 1 MAVSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYEN 60
Query: 54 GNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAI---CLDILKDQWAAAMTLRTVL 110
+ L+++ YP PP V+F+TKI I++ +G + + +L +W + +++ VL
Sbjct: 61 RIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVL 119
Query: 111 LSLQALMAAAE 121
L+ LM + E
Sbjct: 120 QELRRLMMSKE 130
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 11/131 (8%)
Query: 1 MANIAAQRIKREFKEVIKSEE----VAKCAIKLELIDD---NYTELKGEIAGPPDTPYEG 53
MA ++ R F+ + + EE V + L DD T G I GPP T YE
Sbjct: 6 MAVSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYEN 65
Query: 54 GNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAI---CLDILKDQWAAAMTLRTVL 110
+ L+++ YP PP V+F+TKI I++ +G + + +L +W + +++ VL
Sbjct: 66 RIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVL 124
Query: 111 LSLQALMAAAE 121
L+ LM + E
Sbjct: 125 QELRRLMMSKE 135
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 11/124 (8%)
Query: 8 RIKREFKEVIKSEE----VAKCAIKLELIDD---NYTELKGEIAGPPDTPYEGGNFVLEI 60
++ R F+ + + EE V + L DD T G I GPP T YE + L++
Sbjct: 2 KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKV 61
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAI---CLDILKDQWAAAMTLRTVLLSLQALM 117
+ YP PP V+F+TKI I++ +G + + +L +W + +++ VL L+ LM
Sbjct: 62 ECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLM 120
Query: 118 AAAE 121
+ E
Sbjct: 121 MSKE 124
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 11/124 (8%)
Query: 8 RIKREFKEVIKSEE----VAKCAIKLELIDD---NYTELKGEIAGPPDTPYEGGNFVLEI 60
++ R F+ + + EE V + L DD T G I GPP T YE + L++
Sbjct: 3 KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKV 62
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAI---CLDILKDQWAAAMTLRTVLLSLQALM 117
+ YP PP V+F+TKI I++ +G + + +L +W + +++ VL L+ LM
Sbjct: 63 ECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLM 121
Query: 118 AAAE 121
+ E
Sbjct: 122 MSKE 125
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 11/124 (8%)
Query: 8 RIKREFKEVIKSEE----VAKCAIKLELIDD---NYTELKGEIAGPPDTPYEGGNFVLEI 60
++ R F+ + + EE V + L DD T G I GPP T YE + L+I
Sbjct: 23 KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKI 82
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAI---CLDILKDQWAAAMTLRTVLLSLQALM 117
+ YP PP V+F+TKI ++S G + + +L +W + +++ VL L+ LM
Sbjct: 83 ECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLM 141
Query: 118 AAAE 121
+ E
Sbjct: 142 MSKE 145
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 11/124 (8%)
Query: 8 RIKREFKEVIKSEE----VAKCAIKLELIDD---NYTELKGEIAGPPDTPYEGGNFVLEI 60
++ R F+ + + EE V + L DD T G I GPP T YE + L+I
Sbjct: 5 KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMILGPPRTIYENRIYSLKI 64
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAI---CLDILKDQWAAAMTLRTVLLSLQALM 117
+ YP PP V+F+TKI ++S G + + +L +W + +++ VL L+ LM
Sbjct: 65 ECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLM 123
Query: 118 AAAE 121
+ E
Sbjct: 124 MSKE 127
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 11/124 (8%)
Query: 8 RIKREFKEVIKSEE----VAKCAIKLELIDD---NYTELKGEIAGPPDTPYEGGNFVLEI 60
++ R F+ + + EE V + L DD T G I GPP T YE + L+I
Sbjct: 33 KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKI 92
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAI---CLDILKDQWAAAMTLRTVLLSLQALM 117
+ YP PP V+F+TKI ++S G + + +L +W + +++ VL L+ LM
Sbjct: 93 ECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLM 151
Query: 118 AAAE 121
+ E
Sbjct: 152 MSKE 155
>pdb|1ZUO|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
pdb|1ZUO|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
Length = 186
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 65/130 (50%), Gaps = 13/130 (10%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAG-PPDTPY----------EG 53
A+ R+ +E +++ +S+ +ELI+D+ + ++ PD+P EG
Sbjct: 28 ASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEG 87
Query: 54 GNFVL-EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQ-WAAAMTLRTVLL 111
++L + +PF+PP V+ + + GA+C+++L Q W++A ++ +V++
Sbjct: 88 IEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIM 147
Query: 112 SLQALMAAAE 121
+ A + +
Sbjct: 148 QINATLVKGK 157
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 5/118 (4%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
A RI++E +K+ + C I + N + G +T Y + ++I P+
Sbjct: 21 ANYRIQKELNNFLKNPPI-NCTIDVH--PSNIRIWIVQYVGLENTIYANEVYKIKIIFPD 77
Query: 65 TYPFNPPKVKFLTK-IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAE 121
YP PP V FL K H ++ S G ICL +L D + ++++ ++LS+ +++++A+
Sbjct: 78 NYPLKPPIVYFLQKPPKHTHVYS-NGDICLSVLGDDYNPSLSISGLILSIISMLSSAK 134
>pdb|2QGX|A Chain A, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|B Chain B, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|C Chain C, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|D Chain D, Ubiquitin-Conjugating Enzyme E2q
Length = 169
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 71/153 (46%), Gaps = 21/153 (13%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAG-PPDTPY----------EG 53
A R+ +E +++ +S+ +EL++D+ + ++ D+ EG
Sbjct: 7 ATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQILKEKEG 66
Query: 54 GNFVL-EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQ-WAAAMTLRTVLL 111
+F+L + +PF+PP V+ ++ + GAIC+++L Q W++A ++ +V++
Sbjct: 67 ADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESVIM 126
Query: 112 SLQALMAAAEPDDPQDAVVAKQYKENPEMFTLT 144
+ A + + Q+ N ++LT
Sbjct: 127 QISATLVKGKA--------RVQFGANKSQYSLT 151
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
M N A RI++E + + + C L++ +N + G +T Y + L+I
Sbjct: 4 MGN-ANYRIQKELHNFLNNPPI-NCT--LDVHPNNIRIWIVKYVGLENTIYANEVYKLKI 59
Query: 61 KVPETYPFNPPKVKFLTK-IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAA 119
P+ YP PP V FL K H ++ S G ICL +L D + ++++ ++LS+ +++++
Sbjct: 60 IFPDDYPLKPPIVYFLQKPPKHTHVYS-NGDICLSLLGDDYNPSLSISGLVLSIISMLSS 118
Query: 120 AE 121
A+
Sbjct: 119 AK 120
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 8 RIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
R+ E + K + LE DD + I G P T +E + L I + Y
Sbjct: 25 RLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNY 84
Query: 67 PFNPPKVKFLTKIWHPNISSVTGAI--CLDILKDQWAAAMTLRTVLLSL-QALMAAAEPD 123
P +PP VKF TKI + + I L ILK+ W T+ T+L+SL Q ++++A
Sbjct: 85 PDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKN-WNRNYTIETILISLRQEMLSSANKR 143
Query: 124 DPQ 126
PQ
Sbjct: 144 LPQ 146
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 43 IAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAI--CLDILKDQW 100
I G P T +E + L I + YP +PP VKF TKI + + I L ILK+ W
Sbjct: 65 IFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKN-W 123
Query: 101 AAAMTLRTVLLSL-QALMAAAEPDDPQ 126
T+ T+L+SL Q ++++A PQ
Sbjct: 124 NRNYTIETILISLRQEMLSSANKRLPQ 150
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 14/114 (12%)
Query: 42 EIAGPPDTPYEG-GN-FVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQ 99
++ P D+ Y G GN + L + + YP PP V+F+T ++ P ++ G IC ++ D
Sbjct: 55 KVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTG-EGGICDRMVNDF 113
Query: 100 WA----AAMTLRTVLLSLQALMAAAEPDD--PQDAVVAKQYKEN-PEMFTLTAR 146
W A+ ++ VL + + + DD P+ A+ Y E P+ F R
Sbjct: 114 WTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPE----ARHYLEKFPQDFAARVR 163
>pdb|2Z6O|A Chain A, Crystal Structure Of The Ufc1, Ufm1 Conjugating Enzyme 1
Length = 172
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 60/155 (38%), Gaps = 36/155 (23%)
Query: 4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGG--------- 54
+ QR+K E++ +I+ E K A D+++ L+ G T + G
Sbjct: 32 LWVQRLKEEYQSLIRYVENNKNA------DNDWFRLESNKEG---TRWFGKCWYIHDLLK 82
Query: 55 -NFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVT------GAICL-DILKDQWAAAM-- 104
F +E +P TYP P++ P + T G ICL D K WA +
Sbjct: 83 YEFDIEFDIPITYPTTAPEIAV------PELDGKTAKMYRGGKICLTDHFKPLWARNVPK 136
Query: 105 --TLRTVLLSLQALMAAAEPDDPQDAVVAKQYKEN 137
+ L L +A PD Q V+ + K N
Sbjct: 137 FGLAHLMALGLGPWLAVEIPDLIQKGVIQHKEKCN 171
>pdb|2K07|A Chain A, Solution Nmr Structure Of Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
Length = 175
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 60/155 (38%), Gaps = 36/155 (23%)
Query: 4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGG--------- 54
+ QR+K E++ +I+ E K A D+++ L+ G T + G
Sbjct: 27 LWVQRLKEEYQSLIRYVENNKNA------DNDWFRLESNKEG---TRWFGKCWYIHDLLK 77
Query: 55 -NFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVT------GAICL-DILKDQWAAAM-- 104
F +E +P TYP P++ P + T G ICL D K WA +
Sbjct: 78 YEFDIEFDIPITYPTTAPEIAV------PELDGKTAKMYRGGKICLTDHFKPLWARNVPK 131
Query: 105 --TLRTVLLSLQALMAAAEPDDPQDAVVAKQYKEN 137
+ L L +A PD Q V+ + K N
Sbjct: 132 FGLAHLMALGLGPWLAVEIPDLIQKGVIQHKEKCN 166
>pdb|2G3Q|A Chain A, Solution Structure Of Ede1 Uba-Ubiquitin Complex
Length = 43
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 166 IQRLTDMGVMSHDARVALSTYNWELERAT 194
++ L+ MG +A AL NW+LE AT
Sbjct: 8 VEELSGMGFTEEEAHNALEKCNWDLEAAT 36
>pdb|2ATQ|B Chain B, Rb69 Single-Stranded Dna Binding Protein-Dna Polymerase
Fusion
Length = 234
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 41 GEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNI 84
GE P+EG NFVL++K + N + KFL + PNI
Sbjct: 139 GETPVDVTCPWEGANFVLKVKQVSGFS-NYDESKFLNQSAIPNI 181
>pdb|2A1K|A Chain A, Rb69 Single-Stranded Dna Binding Protein Core Domain
pdb|2A1K|B Chain B, Rb69 Single-Stranded Dna Binding Protein Core Domain
Length = 233
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 41 GEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNI 84
GE P+EG NFVL++K + N + KFL + PNI
Sbjct: 138 GETPVDVTCPWEGANFVLKVKQVSGFS-NYDESKFLNQSAIPNI 180
>pdb|1GPC|A Chain A, Core Gp32, Dna-Binding Protein
Length = 218
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 41 GEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNI 84
GE P+EG NFVL++K + N + KFL + PNI
Sbjct: 137 GETPVDVTCPWEGANFVLKVKQVSGFS-NYDESKFLNQSAIPNI 179
>pdb|3EVX|A Chain A, Crystal Structure Of The Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
pdb|3EVX|B Chain B, Crystal Structure Of The Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
pdb|3EVX|C Chain C, Crystal Structure Of The Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
pdb|3EVX|D Chain D, Crystal Structure Of The Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
Length = 175
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 59/155 (38%), Gaps = 36/155 (23%)
Query: 4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGG--------- 54
+ QR+K E++ +I+ E K A D+++ L+ G T + G
Sbjct: 27 LWVQRLKEEYQSLIRYVENNKNA------DNDWFRLESNKEG---TRWFGKCWYIHDLLK 77
Query: 55 -NFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVT------GAICL-DILKDQWAAAM-- 104
F +E +P TYP P++ P + T G ICL D K WA +
Sbjct: 78 YEFDIEFDIPITYPTTAPEIAV------PELDGKTAKXYRGGKICLTDHFKPLWARNVPK 131
Query: 105 --TLRTVLLSLQALMAAAEPDDPQDAVVAKQYKEN 137
L L +A PD Q V+ + K N
Sbjct: 132 FGLAHLXALGLGPWLAVEIPDLIQKGVIQHKEKCN 166
>pdb|2Z6P|A Chain A, Crystal Structure Of The Ufc1, Ufm1 Conjugating Enzyme 1
Length = 172
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 59/155 (38%), Gaps = 36/155 (23%)
Query: 4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGG--------- 54
+ QR+K E++ +I+ E K A D+++ L+ G T + G
Sbjct: 32 LWVQRLKEEYQSLIRYVENNKNA------DNDWFRLESNKEG---TRWFGKCWYIHDLLK 82
Query: 55 -NFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVT------GAICL-DILKDQWAAAM-- 104
F +E +P TYP P++ P + T G ICL D K WA +
Sbjct: 83 YEFDIEFDIPITYPTTAPEIAV------PELDGKTAKXYRGGKICLTDHFKPLWARNVPK 136
Query: 105 --TLRTVLLSLQALMAAAEPDDPQDAVVAKQYKEN 137
L L +A PD Q V+ + K N
Sbjct: 137 FGLAHLXALGLGPWLAVEIPDLIQKGVIQHKEKCN 171
>pdb|1IWM|A Chain A, Crystal Structure Of The Outer Membrane Lipoprotein
Receptor, Lolb
pdb|1IWM|B Chain B, Crystal Structure Of The Outer Membrane Lipoprotein
Receptor, Lolb
pdb|1IWN|A Chain A, Crystal Structure Of The Outer Membrane Lipoprotein
Receptor Lolb Complexed With Pegmme2000
Length = 186
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 27/91 (29%)
Query: 105 TLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDS 164
+LR +L L P D D + QY+ + ++ ++W VY G +D+
Sbjct: 113 SLRQWILGL--------PGDATDYKLDDQYRLSEITYSQNGKNWKVVYGG-------YDT 157
Query: 165 KIQ-------RLTDMGVMSHDARVALSTYNW 188
K Q LTD G R+ L NW
Sbjct: 158 KTQPAMPANMELTDGG-----QRIKLKMDNW 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,216,442
Number of Sequences: 62578
Number of extensions: 257280
Number of successful extensions: 895
Number of sequences better than 100.0: 134
Number of HSP's better than 100.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 689
Number of HSP's gapped (non-prelim): 135
length of query: 199
length of database: 14,973,337
effective HSP length: 94
effective length of query: 105
effective length of database: 9,091,005
effective search space: 954555525
effective search space used: 954555525
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)