Query psy17487
Match_columns 199
No_of_seqs 182 out of 1490
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 23:43:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17487.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17487hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0418|consensus 100.0 1E-55 2.2E-60 341.6 18.8 198 1-199 1-199 (200)
2 KOG0417|consensus 100.0 9.9E-53 2.2E-57 315.8 13.8 147 5-155 2-148 (148)
3 COG5078 Ubiquitin-protein liga 100.0 1.4E-51 3E-56 316.1 16.1 148 3-154 4-152 (153)
4 PTZ00390 ubiquitin-conjugating 100.0 1.8E-48 4E-53 301.4 17.6 148 5-156 3-150 (152)
5 KOG0419|consensus 100.0 2.4E-48 5.3E-53 284.6 13.3 148 1-152 1-148 (152)
6 PLN00172 ubiquitin conjugating 100.0 9.9E-48 2.1E-52 296.0 16.8 145 5-153 2-146 (147)
7 KOG0424|consensus 100.0 8E-44 1.7E-48 264.5 15.3 150 1-154 1-157 (158)
8 KOG0425|consensus 100.0 3.1E-43 6.7E-48 264.9 14.5 146 3-152 4-163 (171)
9 PF00179 UQ_con: Ubiquitin-con 100.0 8E-42 1.7E-46 261.1 14.6 138 8-149 1-140 (140)
10 cd00195 UBCc Ubiquitin-conjuga 100.0 3.9E-41 8.5E-46 257.7 14.9 139 7-149 2-141 (141)
11 KOG0426|consensus 100.0 3.5E-41 7.5E-46 247.1 13.5 148 1-152 1-162 (165)
12 smart00212 UBCc Ubiquitin-conj 100.0 2.4E-40 5.2E-45 254.4 15.4 143 7-153 1-145 (145)
13 KOG0421|consensus 100.0 1.3E-40 2.8E-45 247.3 13.0 144 3-151 28-171 (175)
14 KOG0422|consensus 100.0 1.1E-38 2.3E-43 236.0 13.6 148 5-156 3-151 (153)
15 KOG0416|consensus 100.0 8.7E-38 1.9E-42 238.3 12.5 150 1-157 1-151 (189)
16 KOG0420|consensus 100.0 2.6E-36 5.6E-41 230.7 11.5 149 3-156 27-177 (184)
17 KOG0423|consensus 100.0 1.3E-35 2.8E-40 226.8 8.2 150 4-157 10-159 (223)
18 KOG0427|consensus 100.0 4.8E-30 1E-34 188.1 9.9 116 1-121 12-128 (161)
19 KOG0894|consensus 99.9 1.3E-26 2.7E-31 183.3 13.4 114 2-122 3-120 (244)
20 KOG0429|consensus 99.9 1.1E-23 2.3E-28 167.2 13.3 141 7-151 22-167 (258)
21 KOG0428|consensus 99.8 7.1E-21 1.5E-25 153.4 7.7 109 3-119 10-122 (314)
22 KOG0895|consensus 99.7 3.9E-17 8.4E-22 153.6 9.4 169 7-184 854-1043(1101)
23 KOG0895|consensus 99.6 2.4E-15 5.2E-20 141.7 10.1 113 4-120 282-405 (1101)
24 KOG0896|consensus 99.6 6.8E-15 1.5E-19 108.9 6.1 113 7-119 8-123 (138)
25 KOG0897|consensus 98.8 5E-09 1.1E-13 75.7 5.4 92 56-148 13-109 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.6 1.3E-07 2.7E-12 71.7 7.2 67 52-119 34-106 (133)
27 PF05743 UEV: UEV domain; Int 98.4 1.7E-06 3.6E-11 64.6 7.0 79 35-119 31-117 (121)
28 PF08694 UFC1: Ubiquitin-fold 98.1 3.3E-06 7.1E-11 63.6 3.7 100 5-110 25-135 (161)
29 smart00165 UBA Ubiquitin assoc 98.0 1.3E-05 2.9E-10 46.9 4.5 36 163-198 2-37 (37)
30 cd00194 UBA Ubiquitin Associat 98.0 2E-05 4.3E-10 46.4 4.7 37 163-199 2-38 (38)
31 PF00627 UBA: UBA/TS-N domain; 97.9 2.6E-05 5.6E-10 45.8 4.6 35 163-197 3-37 (37)
32 KOG2391|consensus 97.7 0.00029 6.3E-09 60.4 8.7 81 35-121 51-139 (365)
33 KOG3357|consensus 97.1 0.0012 2.6E-08 49.2 5.6 95 6-110 29-138 (167)
34 TIGR00601 rad23 UV excision re 96.3 0.0052 1.1E-07 54.3 4.6 42 158-199 152-193 (378)
35 PF05773 RWD: RWD domain; Int 96.0 0.018 3.9E-07 41.2 5.2 70 6-79 3-74 (113)
36 PF14462 Prok-E2_E: Prokaryoti 95.9 0.064 1.4E-06 39.9 7.9 89 25-118 12-120 (122)
37 PF14457 Prok-E2_A: Prokaryoti 95.6 0.029 6.3E-07 43.9 5.3 62 57-119 56-126 (162)
38 smart00591 RWD domain in RING 94.8 0.15 3.3E-06 36.0 6.7 26 52-77 39-64 (107)
39 PF14555 UBA_4: UBA-like domai 94.5 0.1 2.2E-06 31.4 4.5 35 164-198 2-37 (43)
40 KOG0011|consensus 93.5 0.11 2.4E-06 44.8 4.3 41 159-199 132-172 (340)
41 PF02845 CUE: CUE domain; Int 92.3 0.4 8.6E-06 28.5 4.5 36 163-198 2-39 (42)
42 TIGR00601 rad23 UV excision re 89.4 1.1 2.4E-05 39.8 6.3 75 125-199 280-374 (378)
43 PF09765 WD-3: WD-repeat regio 89.0 2.2 4.7E-05 36.5 7.6 87 6-119 101-188 (291)
44 PF09288 UBA_3: Fungal ubiquit 88.9 0.58 1.3E-05 29.8 3.1 28 163-190 10-37 (55)
45 KOG0309|consensus 86.5 2.3 5E-05 40.8 6.7 68 6-78 422-491 (1081)
46 smart00546 CUE Domain that may 85.2 2.9 6.3E-05 24.8 4.7 37 163-199 3-41 (43)
47 KOG4018|consensus 83.8 3.8 8.2E-05 33.3 6.0 65 7-76 5-71 (215)
48 KOG0011|consensus 74.4 9.9 0.00021 33.0 6.0 74 126-199 249-335 (340)
49 KOG2561|consensus 70.2 24 0.00052 32.2 7.6 49 149-197 362-410 (568)
50 KOG0944|consensus 66.8 9.7 0.00021 36.2 4.6 57 143-199 601-672 (763)
51 smart00804 TAP_C C-terminal do 62.0 29 0.00063 22.6 5.0 36 160-195 10-46 (63)
52 PF06113 BRE: Brain and reprod 60.9 20 0.00044 31.2 5.2 42 36-83 53-95 (333)
53 KOG0010|consensus 56.9 20 0.00044 32.8 4.8 41 159-199 451-492 (493)
54 KOG2561|consensus 54.5 17 0.00037 33.1 3.8 35 163-197 304-338 (568)
55 PF14460 Prok-E2_D: Prokaryoti 50.8 20 0.00043 28.2 3.3 42 75-120 88-133 (175)
56 PF03943 TAP_C: TAP C-terminal 48.8 23 0.0005 22.0 2.8 32 165-196 3-35 (51)
57 PRK06369 nac nascent polypepti 48.6 42 0.00092 24.7 4.5 32 166-197 80-112 (115)
58 TIGR00264 alpha-NAC-related pr 47.0 46 0.00099 24.6 4.5 32 166-197 82-114 (116)
59 PF03366 YEATS: YEATS family; 42.3 56 0.0012 22.5 4.2 42 37-80 2-43 (84)
60 smart00340 HALZ homeobox assoc 41.9 31 0.00066 20.8 2.3 14 6-19 21-34 (44)
61 PF11626 Rap1_C: TRF2-interact 41.1 51 0.0011 22.7 3.9 32 167-198 2-33 (87)
62 cd07981 TAF12 TATA Binding Pro 39.3 1.1E+02 0.0024 20.1 6.3 47 112-158 6-52 (72)
63 COG0525 ValS Valyl-tRNA synthe 38.5 2.7E+02 0.0059 27.8 9.4 65 82-154 42-122 (877)
64 PF06113 BRE: Brain and reprod 37.6 58 0.0012 28.5 4.4 28 53-81 305-332 (333)
65 TIGR03737 PRTRC_B PRTRC system 37.4 53 0.0011 27.1 4.0 40 77-121 131-174 (228)
66 KOG1071|consensus 37.3 61 0.0013 28.2 4.4 35 163-197 47-82 (340)
67 cd00421 intradiol_dioxygenase 34.5 38 0.00082 25.7 2.5 25 52-76 64-89 (146)
68 PF07223 DUF1421: Protein of u 34.2 40 0.00086 29.8 2.9 21 161-181 320-340 (358)
69 KOG3024|consensus 33.3 2.1E+02 0.0044 24.7 6.9 40 137-176 104-144 (312)
70 PRK14135 recX recombination re 32.7 1.1E+02 0.0024 25.2 5.3 49 140-189 214-262 (263)
71 PRK14136 recX recombination re 29.3 3.4E+02 0.0073 23.6 7.6 50 139-188 255-304 (309)
72 cd03457 intradiol_dioxygenase_ 29.1 51 0.0011 26.3 2.6 25 52-76 85-109 (188)
73 COG4008 Predicted metal-bindin 27.8 2.7E+02 0.0058 21.0 7.9 62 132-197 87-148 (153)
74 KOG0662|consensus 27.2 39 0.00085 27.4 1.6 57 68-124 167-226 (292)
75 KOG3203|consensus 26.3 35 0.00075 26.5 1.1 15 77-93 49-63 (165)
76 KOG0944|consensus 26.3 1.1E+02 0.0023 29.5 4.4 32 163-194 572-604 (763)
77 COG5207 UBP14 Isopeptidase T [ 26.1 1.3E+02 0.0028 28.2 4.8 54 143-196 588-655 (749)
78 PF03847 TFIID_20kDa: Transcri 25.6 1.5E+02 0.0032 19.5 3.9 48 112-159 4-51 (68)
79 cd05777 DNA_polB_delta_exo DED 25.1 2.2E+02 0.0047 23.0 5.7 60 88-151 149-212 (230)
80 KOG4445|consensus 24.7 73 0.0016 27.6 2.8 25 54-78 45-69 (368)
81 PF02954 HTH_8: Bacterial regu 24.4 79 0.0017 18.4 2.2 23 175-197 6-28 (42)
82 PF03474 DMA: DMRTA motif; In 24.2 1.4E+02 0.003 17.6 3.1 25 174-198 15-39 (39)
83 cd03459 3,4-PCD Protocatechuat 23.3 77 0.0017 24.5 2.5 24 53-76 72-100 (158)
84 PF02631 RecX: RecX family; I 23.1 2.1E+02 0.0046 20.4 4.8 27 159-185 92-118 (121)
85 PF04190 DUF410: Protein of un 22.3 4.1E+02 0.0088 22.1 6.9 32 137-169 68-99 (260)
86 PF04695 Pex14_N: Peroxisomal 21.1 3.6E+02 0.0077 20.1 6.1 50 138-190 2-51 (136)
87 KOG2851|consensus 21.0 1.3E+02 0.0028 26.8 3.6 33 84-116 332-369 (412)
88 PF11333 DUF3135: Protein of u 20.5 2.5E+02 0.0054 19.3 4.4 57 128-186 7-70 (83)
89 COG5207 UBP14 Isopeptidase T [ 20.3 1.7E+02 0.0036 27.5 4.3 33 163-195 559-592 (749)
No 1
>KOG0418|consensus
Probab=100.00 E-value=1e-55 Score=341.62 Aligned_cols=198 Identities=59% Similarity=0.981 Sum_probs=191.4
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW 80 (199)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 80 (199)
|++ +.+||++|++++.++.+....||.++..++|+.+..+.|.||++|||+||+|.+.|.+|++|||+||+|+|.|+||
T Consensus 1 m~~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIw 79 (200)
T KOG0418|consen 1 MSN-AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIW 79 (200)
T ss_pred Ccc-HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeee
Confidence 788 8999999999999876666899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCC-CCC
Q psy17487 81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGP-SKN 159 (199)
Q Consensus 81 HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~-~~~ 159 (199)
||||.+.+|.||+|+|++.|++++|++++|.+||++|..|++.+|.+.+.|++|.++++.|.++||.|+..||+++ ..+
T Consensus 80 HPnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~~~~~~ 159 (200)
T KOG0418|consen 80 HPNVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGGRLPDD 159 (200)
T ss_pred cCCCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999995 458
Q ss_pred cchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 160 PDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 160 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
+.+.+++.+|++|||+++.++++|+..+|++.+|.|++|+
T Consensus 160 ~~~~~~v~~l~~mGf~~~~~i~~L~~~~w~~~~a~~~~~s 199 (200)
T KOG0418|consen 160 PWDKKKVDSLIEMGFSELEAILVLSGSDWNLADATEQLLS 199 (200)
T ss_pred chhHHHHHHHHHhcccHHHHHHHhhccccchhhhhHhhcc
Confidence 8899999999999999999999999999999999999975
No 2
>KOG0417|consensus
Probab=100.00 E-value=9.9e-53 Score=315.83 Aligned_cols=147 Identities=48% Similarity=0.882 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCCc
Q psy17487 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNI 84 (199)
Q Consensus 5 a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 84 (199)
+.+||.+|+++|.+. ++.|+.+.+.++|+++|+++|.||.+|||+||+|++.|.||++||++||+|+|.|+||||||
T Consensus 2 a~~RI~kE~~~l~~d---p~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI 78 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRD---PPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNI 78 (148)
T ss_pred cHHHHHHHHHHHhcC---CCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCc
Confidence 467999999999875 56889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q psy17487 85 SSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGG 155 (199)
Q Consensus 85 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~ 155 (199)
+ ..|.||+|+|++.|+|+++|.+||++|++||.+||+++|++.++|.+|+.|+.+|.++||+|+++||++
T Consensus 79 ~-~~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~~ 148 (148)
T KOG0417|consen 79 D-SNGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAMG 148 (148)
T ss_pred C-ccccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 9 699999999999999999999999999999999999999999999999999999999999999999974
No 3
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-51 Score=316.06 Aligned_cols=148 Identities=45% Similarity=0.853 Sum_probs=143.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCcceEEEecCC-CcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccccc
Q psy17487 3 NIAAQRIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWH 81 (199)
Q Consensus 3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~d-n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 81 (199)
+.|.+||++|++.|+++ ++.++++.+.++ |+++|+++|.||++|||+||+|++.|.||++||++||+|+|+|+|||
T Consensus 4 ~~a~~RL~kE~~~l~~~---~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~H 80 (153)
T COG5078 4 PSALKRLLKELKKLQKD---PPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH 80 (153)
T ss_pred hhHHHHHHHHHHHHhcC---CCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcC
Confidence 44899999999999986 578999999988 99999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcC
Q psy17487 82 PNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAG 154 (199)
Q Consensus 82 PnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~ 154 (199)
|||| .+|.||+++|.+.|+|++++++||.+|+++|.+||+++|+|.|||++|++|+++|.++||+|+++|+.
T Consensus 81 PNV~-~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 81 PNVD-PSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CCcC-CCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 9999 69999999999999999999999999999999999999999999999999999999999999999875
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1.8e-48 Score=301.39 Aligned_cols=148 Identities=49% Similarity=0.839 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCCc
Q psy17487 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNI 84 (199)
Q Consensus 5 a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 84 (199)
+++||++|+++|.++ ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus 3 ~~kRl~~E~~~l~~~---~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV 79 (152)
T PTZ00390 3 ISKRIEKETQNLAND---PPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNI 79 (152)
T ss_pred HHHHHHHHHHHHHhC---CCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceE
Confidence 589999999999886 56789999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCC
Q psy17487 85 SSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGP 156 (199)
Q Consensus 85 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~ 156 (199)
+. +|.||+++|.++|+|++|+++||++|+++|.+|++++|+|.+||++|++|++.|.++|++|+++||.+.
T Consensus 80 ~~-~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~~ 150 (152)
T PTZ00390 80 DK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKHN 150 (152)
T ss_pred CC-CCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhccc
Confidence 95 999999999999999999999999999999999999999999999999999999999999999999853
No 5
>KOG0419|consensus
Probab=100.00 E-value=2.4e-48 Score=284.57 Aligned_cols=148 Identities=32% Similarity=0.695 Sum_probs=142.9
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW 80 (199)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 80 (199)
|+.-|.+||.++++.|+++ ++.|++..|.++|+..|.++|+||.+|||+||+|++.|.|+++||.+||.|+|++.+|
T Consensus 1 MstpArrrLmrDfkrlqed---pp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mF 77 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQED---PPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMF 77 (152)
T ss_pred CCchHHHHHHHHHHHhhcC---CCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeecc
Confidence 8888999999999999886 7899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHh
Q psy17487 81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVY 152 (199)
Q Consensus 81 HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~ 152 (199)
|||||. +|.||+|+|...|+|.|++.+||.+||+||.+||+++|+|.+||++|++|+.+|.+++|..+.+.
T Consensus 78 HPNvya-~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqs 148 (152)
T KOG0419|consen 78 HPNVYA-DGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQS 148 (152)
T ss_pred CCCcCC-CCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHh
Confidence 999995 89999999999999999999999999999999999999999999999999999999999877653
No 6
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=9.9e-48 Score=295.98 Aligned_cols=145 Identities=47% Similarity=0.868 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCCc
Q psy17487 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNI 84 (199)
Q Consensus 5 a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 84 (199)
|.+||++|+++|+++ ++.++.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||
T Consensus 2 a~~Rl~kE~~~l~~~---~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv 78 (147)
T PLN00172 2 ATKRIQKEHKDLLKD---PPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNI 78 (147)
T ss_pred hHHHHHHHHHHHHhC---CCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceE
Confidence 479999999999986 56789999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhc
Q psy17487 85 SSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153 (199)
Q Consensus 85 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a 153 (199)
+. +|.||+++|.++|+|++++++||.+|+++|.+|++++|+|.+||++|.+|+++|.++|++|+++||
T Consensus 79 ~~-~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a 146 (147)
T PLN00172 79 NS-NGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYA 146 (147)
T ss_pred CC-CCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 95 999999999999999999999999999999999999999999999999999999999999999987
No 7
>KOG0424|consensus
Probab=100.00 E-value=8e-44 Score=264.46 Aligned_cols=150 Identities=29% Similarity=0.581 Sum_probs=142.8
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCC-----CcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccc
Q psy17487 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDD-----NYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKF 75 (199)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~d-----n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f 75 (199)
||..+..||+.|-+.+.+. .+.|+++.|... |+..|+|.|.|+.+|+|+||.|.+++.||++||.+||+++|
T Consensus 1 ~s~~~~~rl~eErk~wrk~---hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF 77 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKD---HPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKF 77 (158)
T ss_pred CcchHHHHHHHHHHHHhhc---CCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCcccc
Confidence 8889999999999999986 788999988652 89999999999999999999999999999999999999999
Q ss_pred ccccccCCccCCCCeeeccCchh--hhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhc
Q psy17487 76 LTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153 (199)
Q Consensus 76 ~t~i~HPnV~~~~G~icl~~l~~--~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a 153 (199)
.+++||||||+ +|.|||++|.+ +|+|+.||.+||.+||.||.+||+.+|+|.||...|.+|+.+|+++||.++++||
T Consensus 78 ~~pl~HPNVyp-sgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a 156 (158)
T KOG0424|consen 78 KPPLFHPNVYP-SGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYA 156 (158)
T ss_pred CCCCcCCCcCC-CCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhc
Confidence 99999999997 99999999954 4999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q psy17487 154 G 154 (199)
Q Consensus 154 ~ 154 (199)
.
T Consensus 157 ~ 157 (158)
T KOG0424|consen 157 K 157 (158)
T ss_pred c
Confidence 5
No 8
>KOG0425|consensus
Probab=100.00 E-value=3.1e-43 Score=264.86 Aligned_cols=146 Identities=33% Similarity=0.692 Sum_probs=137.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCcceEEEecCC-CcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccccc
Q psy17487 3 NIAAQRIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWH 81 (199)
Q Consensus 3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~d-n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 81 (199)
+++..-|+++|++|++. +..|+.+...++ |+++|.+.|+||++|.|+||.|+..+.||.+||.+||+++|.|+|||
T Consensus 4 ~~a~~ll~~qlk~L~~~---pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwH 80 (171)
T KOG0425|consen 4 SQASLLLLKQLKELQEE---PVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWH 80 (171)
T ss_pred chhHHHHHHHHHHHhcC---CCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcC
Confidence 45678899999999886 678999988877 99999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCeeeccCc-------------hhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHH
Q psy17487 82 PNISSVTGAICLDIL-------------KDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHW 148 (199)
Q Consensus 82 PnV~~~~G~icl~~l-------------~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~ 148 (199)
|||| ++|.+|+++| .+.|+|.+|+++||++|.+||.+||.++|+|.+||+.|++++++|.++++.+
T Consensus 81 PNvy-~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~ 159 (171)
T KOG0425|consen 81 PNVY-EDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRC 159 (171)
T ss_pred CCcC-CCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHH
Confidence 9999 5999999999 1469999999999999999999999999999999999999999999999999
Q ss_pred HHHh
Q psy17487 149 TNVY 152 (199)
Q Consensus 149 ~~~~ 152 (199)
+++.
T Consensus 160 vr~s 163 (171)
T KOG0425|consen 160 VRRS 163 (171)
T ss_pred HHHH
Confidence 9763
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=8e-42 Score=261.12 Aligned_cols=138 Identities=45% Similarity=0.864 Sum_probs=127.2
Q ss_pred HHHHHHHHHHhcCCCCCcceEEEecCC-CcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCCccC
Q psy17487 8 RIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISS 86 (199)
Q Consensus 8 RL~~E~~~l~~~~~~~~~~i~v~~~~d-n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 86 (199)
||++|+++++++ ++.|+.+.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus 1 Rl~~E~~~l~~~---~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~- 76 (140)
T PF00179_consen 1 RLQKELKELQKN---PPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID- 76 (140)
T ss_dssp HHHHHHHHHHHS---HTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB--
T ss_pred CHHHHHHHHhhC---CCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccc-
Confidence 899999999886 678999999887 999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeccCchh-hhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHH
Q psy17487 87 VTGAICLDILKD-QWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWT 149 (199)
Q Consensus 87 ~~G~icl~~l~~-~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~ 149 (199)
.+|.||+++|.. .|+|++++.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|.
T Consensus 77 ~~G~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 77 ENGRICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp TTSBBGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred ccccchhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 699999999964 599999999999999999999999999999999999999999999999984
No 10
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=3.9e-41 Score=257.66 Aligned_cols=139 Identities=54% Similarity=0.975 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCCccC
Q psy17487 7 QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISS 86 (199)
Q Consensus 7 ~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 86 (199)
+||++|+++++++ ++.|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.+++|||||+
T Consensus 2 ~Rl~~E~~~l~~~---~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~- 77 (141)
T cd00195 2 KRLQKELKDLKKD---PPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD- 77 (141)
T ss_pred chHHHHHHHHHhC---CCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC-
Confidence 7999999999886 567999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeccCchhh-hhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHH
Q psy17487 87 VTGAICLDILKDQ-WAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWT 149 (199)
Q Consensus 87 ~~G~icl~~l~~~-W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~ 149 (199)
.+|.||+++|... |+|++++.+||.+|+++|.+|+.++|+|.+||++|++|+++|.++|+.|+
T Consensus 78 ~~G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 78 ENGKICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CCCCCchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 6999999999666 99999999999999999999999999999999999999999999999874
No 11
>KOG0426|consensus
Probab=100.00 E-value=3.5e-41 Score=247.06 Aligned_cols=148 Identities=30% Similarity=0.603 Sum_probs=139.7
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCcceEEEecC-CCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccc
Q psy17487 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELID-DNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKI 79 (199)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~-dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 79 (199)
|+..|+|||.+||++|..+ ++.||...|.+ ||+++|.+.|.||++|+|+||+|..++.||.+||.+||+++|...+
T Consensus 1 m~~~AlkRLm~EykqLt~~---~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~ 77 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLN---PPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEM 77 (165)
T ss_pred CchhHHHHHHHHHHHHccC---CCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeeccc
Confidence 7889999999999999886 78899888765 5999999999999999999999999999999999999999999999
Q ss_pred ccCCccCCCCeeeccCc-------------hhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHH
Q psy17487 80 WHPNISSVTGAICLDIL-------------KDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTAR 146 (199)
Q Consensus 80 ~HPnV~~~~G~icl~~l-------------~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak 146 (199)
|||||+. +|+||+++| .+.|+|.++++.||+++.++|.+||.+++.|.+|+.++++|+++|.+.|+
T Consensus 78 fHPNiy~-dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~ 156 (165)
T KOG0426|consen 78 FHPNIYP-DGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAK 156 (165)
T ss_pred ccCcccC-CCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHH
Confidence 9999995 999999998 15699999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q psy17487 147 HWTNVY 152 (199)
Q Consensus 147 ~~~~~~ 152 (199)
..++|.
T Consensus 157 ~lvrKt 162 (165)
T KOG0426|consen 157 RLVRKT 162 (165)
T ss_pred HHHHHh
Confidence 888764
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=2.4e-40 Score=254.41 Aligned_cols=143 Identities=52% Similarity=0.938 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHhcCCCCCcceEEEecCC-CcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCCcc
Q psy17487 7 QRIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNIS 85 (199)
Q Consensus 7 ~RL~~E~~~l~~~~~~~~~~i~v~~~~d-n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 85 (199)
+||++|++++++. .+.|+.+.+.++ |+++|+++|.||++|||+||.|++.|.||++||++||+|+|.+++|||||+
T Consensus 1 ~Rl~~E~~~~~~~---~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~ 77 (145)
T smart00212 1 KRLLKELKELLKD---PPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVD 77 (145)
T ss_pred ChHHHHHHHHHhC---CCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeEC
Confidence 5999999999886 567898888776 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeccCch-hhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhc
Q psy17487 86 SVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153 (199)
Q Consensus 86 ~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a 153 (199)
. +|.||+++|. ++|+|++++.+||.+|+++|.+|++++|+|.+|+++|++|++.|.++|+.|+++++
T Consensus 78 ~-~G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 78 S-SGEICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred C-CCCEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 5 9999999997 89999999999999999999999999999999999999999999999999999874
No 13
>KOG0421|consensus
Probab=100.00 E-value=1.3e-40 Score=247.27 Aligned_cols=144 Identities=35% Similarity=0.650 Sum_probs=136.9
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccC
Q psy17487 3 NIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHP 82 (199)
Q Consensus 3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 82 (199)
....|||++|+-.|+.. ...||+..|..||++.|.++|.||.+|+|+|-.|++.+.||.+||+.||.|+|+|+.|||
T Consensus 28 ~~V~KRLq~ELm~Lmms---~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HP 104 (175)
T KOG0421|consen 28 HSVTKRLQSELMGLMMS---NTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHP 104 (175)
T ss_pred chHHHHHHHHHHHHHhc---CCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCC
Confidence 34689999999999886 568999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHH
Q psy17487 83 NISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNV 151 (199)
Q Consensus 83 nV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~ 151 (199)
||| ..|.||+|+|++.|+..|+++.||++||+||-+||.++|+|..||+++. |.++|.+.+.+..++
T Consensus 105 NVD-~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~ 171 (175)
T KOG0421|consen 105 NVD-LSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKE 171 (175)
T ss_pred Ccc-ccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhc
Confidence 999 5999999999999999999999999999999999999999999999999 999999999876654
No 14
>KOG0422|consensus
Probab=100.00 E-value=1.1e-38 Score=235.99 Aligned_cols=148 Identities=34% Similarity=0.676 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCCc
Q psy17487 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNI 84 (199)
Q Consensus 5 a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 84 (199)
|.+||++|+.+|+++......+ +...+.|++.|++.|. |.+-||..|.|+++|.||.+|||+||+|.|.|+||||||
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn--~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNV 79 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRN--IEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNV 79 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhh--hhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCC
Confidence 6899999999999864322222 3445679999999998 899999999999999999999999999999999999999
Q ss_pred cCCCCeeeccCc-hhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCC
Q psy17487 85 SSVTGAICLDIL-KDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGP 156 (199)
Q Consensus 85 ~~~~G~icl~~l-~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~ 156 (199)
|. .|.+|+.++ .++|.|+...++||+.+..++.+|+++.|++.|+|..|..|+..|.++|.+|+++|+..+
T Consensus 80 De-~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e~r 151 (153)
T KOG0422|consen 80 DE-KGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSEKR 151 (153)
T ss_pred CC-CCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcCcC
Confidence 95 899999999 899999999999999999999999999999999999999999999999999999998765
No 15
>KOG0416|consensus
Probab=100.00 E-value=8.7e-38 Score=238.28 Aligned_cols=150 Identities=29% Similarity=0.684 Sum_probs=140.7
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW 80 (199)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 80 (199)
|++ ..|||..|...|..+ ++.|...++++.+++|.+.||.+|||+||+++++|.+|++||++.|.|.|+++||
T Consensus 1 ms~-~~rRid~Dv~KL~~s------~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIf 73 (189)
T KOG0416|consen 1 MSS-GKRRIDTDVMKLLMS------DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIF 73 (189)
T ss_pred CCC-cccchhhHHHHHHhc------CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeecc
Confidence 443 579999999999763 6788889999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCCCeeeccCchhhhhhcccHHHHHH-HHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCCC
Q psy17487 81 HPNISSVTGAICLDILKDQWAAAMTLRTVLL-SLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPS 157 (199)
Q Consensus 81 HPnV~~~~G~icl~~l~~~W~p~~~i~~il~-~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~~ 157 (199)
||||+..+|.|||+.+...|+|.+++..|+. .|-.||..||+.+|+|.+||.+|.++++.|.+++|++.++||.+..
T Consensus 74 HPNIDe~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~~~ 151 (189)
T KOG0416|consen 74 HPNIDEASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATPEA 151 (189)
T ss_pred CCCchhccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcChhh
Confidence 9999999999999999999999999999996 5678999999999999999999999999999999999999998864
No 16
>KOG0420|consensus
Probab=100.00 E-value=2.6e-36 Score=230.67 Aligned_cols=149 Identities=34% Similarity=0.638 Sum_probs=132.0
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcc--eeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487 3 NIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYT--ELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW 80 (199)
Q Consensus 3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~--~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 80 (199)
+.|+-||++|..++.. ++.+.+.+....+++. ..+++|. |+.+.|.||.|.|.+.+|+.||+.||+|.|+|+||
T Consensus 27 s~a~lrl~~di~elnL---p~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~ 102 (184)
T KOG0420|consen 27 SAALLRLKKDILELNL---PPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVY 102 (184)
T ss_pred cHHHHHHHhhhhhccC---CCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccc
Confidence 5678899999999854 2445555555444444 5999998 99999999999999999999999999999999999
Q ss_pred cCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCC
Q psy17487 81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGP 156 (199)
Q Consensus 81 HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~ 156 (199)
||||| .+|.|||++|+++|+|+.+|.+|+.+++.||.+|+++||+|.+||..+++|++.|...||.....++.+.
T Consensus 103 HPNId-~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~v~~ 177 (184)
T KOG0420|consen 103 HPNID-LDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGCVGQ 177 (184)
T ss_pred cCCcC-CcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCccCc
Confidence 99999 5999999999999999999999999999999999999999999999999999999999997766655443
No 17
>KOG0423|consensus
Probab=100.00 E-value=1.3e-35 Score=226.85 Aligned_cols=150 Identities=30% Similarity=0.633 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCC
Q psy17487 4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPN 83 (199)
Q Consensus 4 ~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 83 (199)
..++.|.+|++.|... +|.||.|.+.++|+....+.|.||.||||++|.|++.+.+..+||.+||+-.|+|+|||||
T Consensus 10 ~vik~~~kEl~~l~~~---PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPN 86 (223)
T KOG0423|consen 10 NVIKQLAKELKSLDES---PPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPN 86 (223)
T ss_pred HHHHHHHHHHHhcccC---CCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCC
Confidence 3578889999998654 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCCC
Q psy17487 84 ISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPS 157 (199)
Q Consensus 84 V~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~~ 157 (199)
|- .+|.||++.|+.+|+|+.+|.+||..|++||..|+|++.+|.+|.+++.+++++|.++||.++..++++..
T Consensus 87 Va-aNGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p~~ 159 (223)
T KOG0423|consen 87 VA-ANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKPKP 159 (223)
T ss_pred cc-cCceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCCCC
Confidence 98 69999999999999999999999999999999999999999999999999999999999999999998843
No 18
>KOG0427|consensus
Probab=99.96 E-value=4.8e-30 Score=188.14 Aligned_cols=116 Identities=34% Similarity=0.684 Sum_probs=108.5
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccc-
Q psy17487 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKI- 79 (199)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i- 79 (199)
|+..|.+||+||+.+++.+ +|.|+... ..||+.+|.+.+.|.+||.|+|.+|.+++.||+.||++.|.|.|+.++
T Consensus 12 ls~~at~RLqKEl~e~q~~---pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P 87 (161)
T KOG0427|consen 12 LSKIATNRLQKELSEWQNN---PPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAP 87 (161)
T ss_pred HHHHHHHHHHHHHHHHhcC---CCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCC
Confidence 4578999999999999887 78899887 567899999999999999999999999999999999999999999987
Q ss_pred ccCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCC
Q psy17487 80 WHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAE 121 (199)
Q Consensus 80 ~HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~ 121 (199)
.||||+. +|.||+++|.+.|+|++++.+|+++|.++|.+-.
T Consensus 88 ~HPHiYS-NGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~ 128 (161)
T KOG0427|consen 88 LHPHIYS-NGHICLDILYDSWSPAMSVQSVCLSILSMLSSSK 128 (161)
T ss_pred CCCceec-CCeEEEEeecccCCcchhhHHHHHHHHHHHccCc
Confidence 8999995 9999999999999999999999999999999843
No 19
>KOG0894|consensus
Probab=99.94 E-value=1.3e-26 Score=183.32 Aligned_cols=114 Identities=29% Similarity=0.556 Sum_probs=103.1
Q ss_pred chHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccccc
Q psy17487 2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWH 81 (199)
Q Consensus 2 s~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 81 (199)
++.|.|||+|||+.|+++ +.+.|...|..+|+++||.+|.||++|||+||.|+.+|.||++||++||.|+++||
T Consensus 3 ~k~a~kRl~keY~~l~k~---Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTP--- 76 (244)
T KOG0894|consen 3 SKAAVKRLQKEYRALCKD---PVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITP--- 76 (244)
T ss_pred chHHHHHHHHHHHHHHhC---CchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECC---
Confidence 367899999999999997 77889999999999999999999999999999999999999999999999999995
Q ss_pred CCc-cCCCCeeeccCc---hhhhhhcccHHHHHHHHHHHHhcCCC
Q psy17487 82 PNI-SSVTGAICLDIL---KDQWAAAMTLRTVLLSLQALMAAAEP 122 (199)
Q Consensus 82 PnV-~~~~G~icl~~l---~~~W~p~~~i~~il~~i~~ll~~p~~ 122 (199)
|- ...+-++||++. ++.|+|++++.+||.++.++|.+..+
T Consensus 77 -NGRFktntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~p 120 (244)
T KOG0894|consen 77 -NGRFKTNTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSP 120 (244)
T ss_pred -CCceecCceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCC
Confidence 31 123568999887 89999999999999999999998554
No 20
>KOG0429|consensus
Probab=99.91 E-value=1.1e-23 Score=167.24 Aligned_cols=141 Identities=21% Similarity=0.286 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCC--CCCccccccccccCCc
Q psy17487 7 QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPF--NPPKVKFLTKIWHPNI 84 (199)
Q Consensus 7 ~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~--~pP~v~f~t~i~HPnV 84 (199)
.-|..||..+.+. ...||+|.|+-.|-+.|.++|+ ...+.|+||+|+|+|.+|++||. .-|+|.|.+.+|||+|
T Consensus 22 y~llAEf~lV~~e---kL~gIyviPSyan~l~WFGViF-vr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~i 97 (258)
T KOG0429|consen 22 YALLAEFVLVCRE---KLDGIYVIPSYANKLLWFGVIF-VRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLI 97 (258)
T ss_pred HHHHHHHHHHHhc---cCCceEEcccccccceEEEEEE-EecccccCceEEEEEEcCccCCCcCCCCeEEeecccccccc
Confidence 4578888888875 5789999999999999999999 56778999999999999999995 4999999999999999
Q ss_pred cCCCCeeeccCchhhhhh-cccHHHHHHHHHHHHhcCCCCCc--hhHHHHHHHhhCHHHHHHHHHHHHHH
Q psy17487 85 SSVTGAICLDILKDQWAA-AMTLRTVLLSLQALMAAAEPDDP--QDAVVAKQYKENPEMFTLTARHWTNV 151 (199)
Q Consensus 85 ~~~~G~icl~~l~~~W~p-~~~i~~il~~i~~ll~~p~~~~p--~n~eaa~~~~~d~~~f~~~ak~~~~~ 151 (199)
.+.++.+|++.....|.- ..+|.+||..+|.+|.+|+.+.+ .|++|+.+|.+++++|.++|+++++.
T Consensus 98 cp~skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~ 167 (258)
T KOG0429|consen 98 CPKSKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKA 167 (258)
T ss_pred CCCccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999998777997 56899999999999999998765 49999999999999999999999873
No 21
>KOG0428|consensus
Probab=99.83 E-value=7.1e-21 Score=153.42 Aligned_cols=109 Identities=35% Similarity=0.604 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccC
Q psy17487 3 NIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHP 82 (199)
Q Consensus 3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 82 (199)
+.+.|||.+|.++|++ +...+...+-+||+++|+++|.||.+|-|+||+|+.+|.||.+||++||.+-.+|+
T Consensus 10 npaVkRlmkEa~El~~----Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp---- 81 (314)
T KOG0428|consen 10 NPAVKRLMKEAAELKD----PTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP---- 81 (314)
T ss_pred CHHHHHHHHHHHHhcC----chhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC----
Confidence 5689999999999974 56677888999999999999999999999999999999999999999999999884
Q ss_pred Ccc-CCCCeeeccCc---hhhhhhcccHHHHHHHHHHHHhc
Q psy17487 83 NIS-SVTGAICLDIL---KDQWAAAMTLRTVLLSLQALMAA 119 (199)
Q Consensus 83 nV~-~~~G~icl~~l---~~~W~p~~~i~~il~~i~~ll~~ 119 (199)
|-- ..+-+||+++. ++.|.|+|+|+..|..|..+|-+
T Consensus 82 NGRFE~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt 122 (314)
T KOG0428|consen 82 NGRFEVNKKICLSISGYHPETWQPSWSIRTALLALIGFMPT 122 (314)
T ss_pred CCceeeCceEEEEecCCCccccCcchhHHHHHHHHHccccC
Confidence 321 23568999998 79999999999999999998865
No 22
>KOG0895|consensus
Probab=99.70 E-value=3.9e-17 Score=153.63 Aligned_cols=169 Identities=27% Similarity=0.495 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccc--cccCCc
Q psy17487 7 QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTK--IWHPNI 84 (199)
Q Consensus 7 ~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPnV 84 (199)
+..+.|++-|..+ .+.||.|+..++.|....+.|.|+.+|||++|.|.|.|.||.+||..||.|...+. ++.||.
T Consensus 854 ~~~~~~~~~~~~~---~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnl 930 (1101)
T KOG0895|consen 854 KKVQTEWKILPLS---LPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNL 930 (1101)
T ss_pred HHHHHHHHhhhcc---CCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccc
Confidence 4455566666554 67899999999999999999999999999999999999999999999999999865 589999
Q ss_pred cCCCCeeeccCc-------hhhhhhcccHHHHHHHHHHHHhcCCC--CCc---------hhHHHHHHHhhCHHHHHHHHH
Q psy17487 85 SSVTGAICLDIL-------KDQWAAAMTLRTVLLSLQALMAAAEP--DDP---------QDAVVAKQYKENPEMFTLTAR 146 (199)
Q Consensus 85 ~~~~G~icl~~l-------~~~W~p~~~i~~il~~i~~ll~~p~~--~~p---------~n~eaa~~~~~d~~~f~~~ak 146 (199)
| ++|+||+++| .+-|+|+-+|.+||.+||.|+....| +.+ .-.+-.+.| |-..|...++
T Consensus 931 y-~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~py~ne~gy~~~~g~~~g~~~s~~y--~~~~~~~~~~ 1007 (1101)
T KOG0895|consen 931 Y-EDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEPYFNEAGYEKQRGTAEGEKNSRVY--NENAFLLTCK 1007 (1101)
T ss_pred c-cccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcccccccCcccccccccccccccccccc--cchhHHHHHH
Confidence 9 5999999999 35699999999999999999887544 211 111111222 3345677776
Q ss_pred HHHHHhcCCCCCCcchHHHH-HHHHhcCCChHHHHHHHh
Q psy17487 147 HWTNVYAGGPSKNPDFDSKI-QRLTDMGVMSHDARVALS 184 (199)
Q Consensus 147 ~~~~~~a~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~ 184 (199)
.++.+...++.. |++.+ +++--.|.+..+++-|..
T Consensus 1008 ~~~~~~~~p~~~---~~e~i~~Hf~~~~~ei~~~c~a~~ 1043 (1101)
T KOG0895|consen 1008 SMVYQLRKPPKC---FEEVIHKHFYLRGVEIMAACEAWI 1043 (1101)
T ss_pred HHHHHhhCCcHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665555433 44444 455556777777665543
No 23
>KOG0895|consensus
Probab=99.61 E-value=2.4e-15 Score=141.73 Aligned_cols=113 Identities=33% Similarity=0.606 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccc---cc
Q psy17487 4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTK---IW 80 (199)
Q Consensus 4 ~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~---i~ 80 (199)
.-.+|+++|++.+.+. .+.|+.+.+.+..+...++.|.|+.+|||++|+|.|.|.||..||..||.|.+++. .+
T Consensus 282 ~~skrv~ke~~llskd---lpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~ 358 (1101)
T KOG0895|consen 282 NWSKKVAKELKLLSKD---LPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRL 358 (1101)
T ss_pred hhHHHHHHHhhhhccc---CCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceee
Confidence 4579999999999886 67889999999999999999999999999999999999999999999999999977 58
Q ss_pred cCCccCCCCeeeccCc----h---hhhhhc-ccHHHHHHHHHHHHhcC
Q psy17487 81 HPNISSVTGAICLDIL----K---DQWAAA-MTLRTVLLSLQALMAAA 120 (199)
Q Consensus 81 HPnV~~~~G~icl~~l----~---~~W~p~-~~i~~il~~i~~ll~~p 120 (199)
.||.|. +|+||+++| . +.|+|. .+|.++|..||.++...
T Consensus 359 nPNlYn-~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 359 NPNLYN-DGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred cCCccc-CceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 999995 999999999 2 679997 89999999999999876
No 24
>KOG0896|consensus
Probab=99.56 E-value=6.8e-15 Score=108.94 Aligned_cols=113 Identities=31% Similarity=0.423 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhcCCCCCcceEEEecCC-CcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCCcc
Q psy17487 7 QRIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNIS 85 (199)
Q Consensus 7 ~RL~~E~~~l~~~~~~~~~~i~v~~~~d-n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 85 (199)
-||.+|+..-++...+...++.+...+| .+..|.+.|.||+.|+|++.+|.++|...++||..||+|+|.+++--+.|+
T Consensus 8 frlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn 87 (138)
T KOG0896|consen 8 FRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVN 87 (138)
T ss_pred hhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccc
Confidence 4788888777665433333333333333 567999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeccCc--hhhhhhcccHHHHHHHHHHHHhc
Q psy17487 86 SVTGAICLDIL--KDQWAAAMTLRTVLLSLQALMAA 119 (199)
Q Consensus 86 ~~~G~icl~~l--~~~W~p~~~i~~il~~i~~ll~~ 119 (199)
+.+|.|.-..+ ..+|+-.++++.+|..+..+|..
T Consensus 88 ~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~~ 123 (138)
T KOG0896|consen 88 SSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMMS 123 (138)
T ss_pred cCCCccCccccchhhcccccchhhHHHHhhhHHHHH
Confidence 88888766444 58999999999999999977665
No 25
>KOG0897|consensus
Probab=98.85 E-value=5e-09 Score=75.73 Aligned_cols=92 Identities=20% Similarity=0.421 Sum_probs=68.3
Q ss_pred EEEEEEeCCCCCCCCCccccccccccCCccCCCCeeeccCc-hhhhhhcccHHHHHHHHHHHHhcCCC--CCchhHHHHH
Q psy17487 56 FVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDIL-KDQWAAAMTLRTVLLSLQALMAAAEP--DDPQDAVVAK 132 (199)
Q Consensus 56 f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~G~icl~~l-~~~W~p~~~i~~il~~i~~ll~~p~~--~~p~n~eaa~ 132 (199)
.-+.+.|+++||+.||++|...|+..-.....+|.||+.+| +.+|+.+++++.++++|...+..... ..+++.+-.
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk- 91 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK- 91 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-
Confidence 45678899999999999998886654444346899999999 88999999999999999999988543 455544433
Q ss_pred HHh--hCHHHHHHHHHHH
Q psy17487 133 QYK--ENPEMFTLTARHW 148 (199)
Q Consensus 133 ~~~--~d~~~f~~~ak~~ 148 (199)
+|. ..-+.|...++..
T Consensus 92 ~~s~~qa~~sfksLv~~h 109 (122)
T KOG0897|consen 92 LYSHSQAQQSFKSLVQIH 109 (122)
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 443 2334455555543
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.62 E-value=1.3e-07 Score=71.68 Aligned_cols=67 Identities=27% Similarity=0.623 Sum_probs=61.1
Q ss_pred CCcEEEEEEEeCCCCCCCCCcccccccc---ccCCccCCCCeeec---cCchhhhhhcccHHHHHHHHHHHHhc
Q psy17487 52 EGGNFVLEIKVPETYPFNPPKVKFLTKI---WHPNISSVTGAICL---DILKDQWAAAMTLRTVLLSLQALMAA 119 (199)
Q Consensus 52 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~HPnV~~~~G~icl---~~l~~~W~p~~~i~~il~~i~~ll~~ 119 (199)
.|+.+.++|.||++||..||.|....+. +-|||+. +|.+|+ ....+.|.|.-.+..+|..+..+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~-~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVES-DGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcC-CCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999988654 6799996 999999 77789999999999999999999984
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.35 E-value=1.7e-06 Score=64.56 Aligned_cols=79 Identities=27% Similarity=0.494 Sum_probs=54.3
Q ss_pred CcceeeEEEeCCCCCCCCCcEE--EEEEEeCCCCCCCCCcccccccc-----ccCCccCCCCeeeccCchhhhhh-cccH
Q psy17487 35 NYTELKGEIAGPPDTPYEGGNF--VLEIKVPETYPFNPPKVKFLTKI-----WHPNISSVTGAICLDILKDQWAA-AMTL 106 (199)
Q Consensus 35 n~~~w~~~i~Gp~~tpy~gg~f--~~~i~fp~~YP~~pP~v~f~t~i-----~HPnV~~~~G~icl~~l~~~W~p-~~~i 106 (199)
.+....++|. -.|.|..| .+.|.+|.+||..||.|...... -+.+|| .+|+|.+..| ++|++ ..++
T Consensus 31 ~LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd-~~G~v~~pyL-~~W~~~~s~L 104 (121)
T PF05743_consen 31 LLLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVD-SNGRVYLPYL-QNWNPPSSNL 104 (121)
T ss_dssp EEEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB--TTSBB-SHHH-HT--TTTS-H
T ss_pred eEEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeEC-CCCCEeCchh-ccCCCCCCCH
Confidence 4455556554 24777777 57788999999999999775331 244999 4999999888 88998 8899
Q ss_pred HHHHHHHHHHHhc
Q psy17487 107 RTVLLSLQALMAA 119 (199)
Q Consensus 107 ~~il~~i~~ll~~ 119 (199)
.+++..+...|.+
T Consensus 105 ~~lv~~l~~~F~~ 117 (121)
T PF05743_consen 105 VDLVQELQAVFSE 117 (121)
T ss_dssp HHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHhH
Confidence 9999888887765
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.09 E-value=3.3e-06 Score=63.64 Aligned_cols=100 Identities=27% Similarity=0.339 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhc----CCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCc--EEEEEEEeCCCCCCCCCccccccc
Q psy17487 5 AAQRIKREFKEVIKS----EEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGG--NFVLEIKVPETYPFNPPKVKFLTK 78 (199)
Q Consensus 5 a~~RL~~E~~~l~~~----~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg--~f~~~i~fp~~YP~~pP~v~f~t~ 78 (199)
=.+||..||..|.+. .......+.++. +.+=+.|.+..-- .|.-- .|.+++.+|..||..||.+..-.-
T Consensus 25 W~~RLKEEy~aLI~Yv~~nK~~DndWF~les-n~~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeL 99 (161)
T PF08694_consen 25 WVQRLKEEYQALIKYVENNKENDNDWFRLES-NKEGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPEIALPEL 99 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT---EEEEE--TTSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS----B-GGG
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCeEEecc-CCCCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCcceecccc
Confidence 368999999998552 111223444442 2233555444331 11222 455666779999999999986421
Q ss_pred c-ccCCccCCCCeeeccCc-hhhhh---hcccHHHHH
Q psy17487 79 I-WHPNISSVTGAICLDIL-KDQWA---AAMTLRTVL 110 (199)
Q Consensus 79 i-~HPnV~~~~G~icl~~l-~~~W~---p~~~i~~il 110 (199)
- -..-.+ -+|+||++.. ..-|. |.++|.+.|
T Consensus 100 dGKTaKMY-RGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 100 DGKTAKMY-RGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp TTT-SSBC-CCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred CCchhhhh-cCceEeeecccchhhhhcCCchhHHHHH
Confidence 0 011223 3899999988 66786 677887765
No 29
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=98.01 E-value=1.3e-05 Score=46.92 Aligned_cols=36 Identities=36% Similarity=0.496 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487 163 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF 198 (199)
Q Consensus 163 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~ 198 (199)
++++.++.+|||+.+.|+.||..++|+++.|.+.||
T Consensus 2 ~~~v~~L~~mGf~~~~a~~aL~~~~~d~~~A~~~L~ 37 (37)
T smart00165 2 EEKIDQLLEMGFSREEALKALRAANGNVERAAEYLL 37 (37)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHC
Confidence 578999999999999999999999999999999875
No 30
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=97.96 E-value=2e-05 Score=46.41 Aligned_cols=37 Identities=35% Similarity=0.529 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 163 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 163 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
++.++++.+|||+.+.|+.||..++|+++.|.+.|++
T Consensus 2 ~~~v~~L~~mGf~~~~~~~AL~~~~~d~~~A~~~L~~ 38 (38)
T cd00194 2 EEKLEQLLEMGFSREEARKALRATNNNVERAVEWLLE 38 (38)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence 5689999999999999999999999999999999874
No 31
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=97.91 E-value=2.6e-05 Score=45.84 Aligned_cols=35 Identities=37% Similarity=0.542 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhh
Q psy17487 163 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAI 197 (199)
Q Consensus 163 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~ 197 (199)
+..+++|++|||+.+.|+.||..++|+++.|++.|
T Consensus 3 ~~~v~~L~~mGf~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 3 EEKVQQLMEMGFSREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHHHTS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHhC
Confidence 57899999999999999999999999999999875
No 32
>KOG2391|consensus
Probab=97.66 E-value=0.00029 Score=60.38 Aligned_cols=81 Identities=25% Similarity=0.472 Sum_probs=63.3
Q ss_pred CcceeeEEEeCCCCCCCCCcEEE--EEEEeCCCCCCCCCccccccc-----cccCCccCCCCeeeccCchhhhhh-cccH
Q psy17487 35 NYTELKGEIAGPPDTPYEGGNFV--LEIKVPETYPFNPPKVKFLTK-----IWHPNISSVTGAICLDILKDQWAA-AMTL 106 (199)
Q Consensus 35 n~~~w~~~i~Gp~~tpy~gg~f~--~~i~fp~~YP~~pP~v~f~t~-----i~HPnV~~~~G~icl~~l~~~W~p-~~~i 106 (199)
+++...++|. .+|.|..|. +.|.+.+.||..||.+..... --|-|||. +|.|-|..| .+|.+ +.++
T Consensus 51 ~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~-nG~V~LPYL-h~W~~pssdL 124 (365)
T KOG2391|consen 51 LLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDP-NGKVYLPYL-HNWDPPSSDL 124 (365)
T ss_pred chhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCC-CCeEechhh-ccCCCccchH
Confidence 4455555554 568887775 677789999999999876522 13899995 999999999 78985 8899
Q ss_pred HHHHHHHHHHHhcCC
Q psy17487 107 RTVLLSLQALMAAAE 121 (199)
Q Consensus 107 ~~il~~i~~ll~~p~ 121 (199)
..++..+.+.|.++.
T Consensus 125 v~Liq~l~a~f~~~p 139 (365)
T KOG2391|consen 125 VGLIQELIAAFSEDP 139 (365)
T ss_pred HHHHHHHHHHhcCCC
Confidence 999999999988754
No 33
>KOG3357|consensus
Probab=97.14 E-value=0.0012 Score=49.18 Aligned_cols=95 Identities=23% Similarity=0.377 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCc----------EEEEEEEeCCCCCCCCCcccc
Q psy17487 6 AQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGG----------NFVLEIKVPETYPFNPPKVKF 75 (199)
Q Consensus 6 ~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~f 75 (199)
.+||..||+.|... ++...++-..|.-.-..+.||-|-|. .|.+++.+|-.||...|.+..
T Consensus 29 vqrlkeey~sli~y---------vqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeial 99 (167)
T KOG3357|consen 29 VQRLKEEYQSLIAY---------VQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIAL 99 (167)
T ss_pred HHHHHHHHHHHHHH---------HHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccc
Confidence 58999999999652 11122223344433345677777664 455666779999999999875
Q ss_pred cccc-ccCCccCCCCeeeccCc-hhhhh---hcccHHHHH
Q psy17487 76 LTKI-WHPNISSVTGAICLDIL-KDQWA---AAMTLRTVL 110 (199)
Q Consensus 76 ~t~i-~HPnV~~~~G~icl~~l-~~~W~---p~~~i~~il 110 (199)
..-- -.--.+ .+|+||+.-. +.-|. |..+|.+.+
T Consensus 100 peldgktakmy-rggkiclt~hfkplwarn~pkfgiaha~ 138 (167)
T KOG3357|consen 100 PELDGKTAKMY-RGGKICLTDHFKPLWARNVPKFGIAHAM 138 (167)
T ss_pred cccCchhhhhh-cCceEeeccccchhhhhcCcchhHHHHH
Confidence 3100 001122 4899999765 66786 455666553
No 34
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.33 E-value=0.0052 Score=54.31 Aligned_cols=42 Identities=21% Similarity=0.304 Sum_probs=39.8
Q ss_pred CCcchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 158 KNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 158 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
...+++..|+++.+|||+++.|+.||+..-.+-++|+|+|++
T Consensus 152 ~g~~~e~~I~~i~eMGf~R~qV~~ALRAafNNPdRAVEYL~t 193 (378)
T TIGR00601 152 VGSERETTIEEIMEMGYEREEVERALRAAFNNPDRAVEYLLT 193 (378)
T ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 466899999999999999999999999999999999999985
No 35
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.96 E-value=0.018 Score=41.25 Aligned_cols=70 Identities=14% Similarity=0.223 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeC--CCCCCCCCcEEEEEEEeCCCCCCCCCcccccccc
Q psy17487 6 AQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAG--PPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKI 79 (199)
Q Consensus 6 ~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~G--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 79 (199)
..+...|+..|..- .+... ......+...+.+.+.+ ...+.-....+.+.+.||++||..||.|.+.++.
T Consensus 3 ~e~~~~EieaL~sI---y~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 3 EEQQEEEIEALQSI---YPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHH---SSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHH---cCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 35677888888662 22222 12222344456666632 2334444568999999999999999999877653
No 36
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=95.89 E-value=0.064 Score=39.94 Aligned_cols=89 Identities=19% Similarity=0.347 Sum_probs=61.9
Q ss_pred cceEEEecCCCcceeeEEEeC--CCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCCccCC-CCee--eccCc---
Q psy17487 25 CAIKLELIDDNYTELKGEIAG--PPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSV-TGAI--CLDIL--- 96 (199)
Q Consensus 25 ~~i~v~~~~dn~~~w~~~i~G--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~-~G~i--cl~~l--- 96 (199)
.|+.++...+.-..|.+ |.| .+.+.|....-.+-|.+|..||..+|.+.+..|-. ... +|.| |-+..
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L----~~~~G~~iP~~~~~~~~~ 86 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPL----KLADGGPIPNAAEVTQTF 86 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCce----EccCCCcCCchhcchhhc
Confidence 47777777766567765 666 56777999999999999999999999887765432 212 2334 33322
Q ss_pred -----------hhhhhhcc-cHHHHHHHHHHHHh
Q psy17487 97 -----------KDQWAAAM-TLRTVLLSLQALMA 118 (199)
Q Consensus 97 -----------~~~W~p~~-~i~~il~~i~~ll~ 118 (199)
...|.|.. +|.+.|..|...|.
T Consensus 87 ~G~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 87 DGRTWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred CCeeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 24577744 68888888877664
No 37
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.58 E-value=0.029 Score=43.85 Aligned_cols=62 Identities=21% Similarity=0.305 Sum_probs=48.6
Q ss_pred EEEEEeCCCCCCCCCccccccccc---cCCccCCC-----CeeeccCc-hhhhhhcccHHHHHHHHHHHHhc
Q psy17487 57 VLEIKVPETYPFNPPKVKFLTKIW---HPNISSVT-----GAICLDIL-KDQWAAAMTLRTVLLSLQALMAA 119 (199)
Q Consensus 57 ~~~i~fp~~YP~~pP~v~f~t~i~---HPnV~~~~-----G~icl~~l-~~~W~p~~~i~~il~~i~~ll~~ 119 (199)
.+.|.|+.+||..+|.|.+.-+.| +||++. + ..+|+--- -..|.+..++..+|..|..-|..
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~-~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNP-GPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCC-CCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence 366899999999999887765543 588874 4 68999766 56788999998888888777664
No 38
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=94.78 E-value=0.15 Score=36.02 Aligned_cols=26 Identities=31% Similarity=0.662 Sum_probs=22.2
Q ss_pred CCcEEEEEEEeCCCCCCCCCcccccc
Q psy17487 52 EGGNFVLEIKVPETYPFNPPKVKFLT 77 (199)
Q Consensus 52 ~gg~f~~~i~fp~~YP~~pP~v~f~t 77 (199)
....+.+.+.||++||..+|.|.+.+
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~ 64 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLN 64 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEEC
Confidence 34568999999999999999998765
No 39
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=94.55 E-value=0.1 Score=31.41 Aligned_cols=35 Identities=34% Similarity=0.514 Sum_probs=26.3
Q ss_pred HHHHHHHhc-CCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487 164 SKIQRLTDM-GVMSHDARVALSTYNWELERATEAIF 198 (199)
Q Consensus 164 ~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~e~~~ 198 (199)
.+|.++.+. |.+...|+..|...+|+++.|+..-+
T Consensus 2 e~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av~~y~ 37 (43)
T PF14555_consen 2 EKIAQFMSITGADEDVAIQYLEANNWDLEAAVNAYF 37 (43)
T ss_dssp HHHHHHHHHH-SSHHHHHHHHHHTTT-HHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 355555555 88999999999999999999997543
No 40
>KOG0011|consensus
Probab=93.50 E-value=0.11 Score=44.75 Aligned_cols=41 Identities=22% Similarity=0.375 Sum_probs=38.4
Q ss_pred CcchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 159 NPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 159 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
+.+++..|.++.+||++++.++.||+..-|.-++|+|+|++
T Consensus 132 G~~~e~~V~~Im~MGy~re~V~~AlRAafNNPeRAVEYLl~ 172 (340)
T KOG0011|consen 132 GSEYEQTVQQIMEMGYDREEVERALRAAFNNPERAVEYLLN 172 (340)
T ss_pred cchhHHHHHHHHHhCccHHHHHHHHHHhhCChhhhHHHHhc
Confidence 45689999999999999999999999999999999999985
No 41
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=92.32 E-value=0.4 Score=28.55 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=31.1
Q ss_pred HHHHHHHHhc--CCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487 163 DSKIQRLTDM--GVMSHDARVALSTYNWELERATEAIF 198 (199)
Q Consensus 163 ~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~e~~~ 198 (199)
+..++.+.++ +++......+|...+++++.|++.||
T Consensus 2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL 39 (42)
T PF02845_consen 2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALL 39 (42)
T ss_dssp HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4567888888 88999999999999999999999987
No 42
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.38 E-value=1.1 Score=39.75 Aligned_cols=75 Identities=19% Similarity=0.195 Sum_probs=57.9
Q ss_pred chhHHHHHHHhhCHHHHHHHHHHHHHH-------------hc--CC-C---CC-CcchHHHHHHHHhcCCChHHHHHHHh
Q psy17487 125 PQDAVVAKQYKENPEMFTLTARHWTNV-------------YA--GG-P---SK-NPDFDSKIQRLTDMGVMSHDARVALS 184 (199)
Q Consensus 125 p~n~eaa~~~~~d~~~f~~~ak~~~~~-------------~a--~~-~---~~-~~~~~~~~~~~~~~g~~~~~~~~~~~ 184 (199)
-.|++.+++.++|.+.|.++.-+-... .+ +. . +. .++....|++|.+.||+++.|+.|+-
T Consensus 280 ~~nP~l~q~I~~n~e~Fl~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lT~eE~~AIeRL~~LGF~r~~viqaY~ 359 (378)
T TIGR00601 280 QENPQLLQQISQHPEQFLQMLNEPVGELAGESDMEGGVGAIAEAGLPQMNQIQVTPEEKEAIERLCALGFDRGLVIQAYF 359 (378)
T ss_pred hhCHHHHHHHHHCHHHHHHHhcCcccccccccccccccccccccCcccccccccCHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 368899999999999999987654311 00 00 0 11 45678899999999999999999999
Q ss_pred hcCCchHHHHHhhhC
Q psy17487 185 TYNWELERATEAIFT 199 (199)
Q Consensus 185 ~~~~~~~~~~e~~~~ 199 (199)
.|.=+-+-|.-.||.
T Consensus 360 ACdKNEelAAn~Lf~ 374 (378)
T TIGR00601 360 ACDKNEELAANYLLS 374 (378)
T ss_pred hcCCcHHHHHHHHHh
Confidence 999998888887773
No 43
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=89.02 E-value=2.2 Score=36.55 Aligned_cols=87 Identities=22% Similarity=0.451 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCCcc
Q psy17487 6 AQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNIS 85 (199)
Q Consensus 6 ~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 85 (199)
..+|.+|+.++..+ ..+.+. .++++...++.+.. +.....++|.+|.+||..+|.+...-++
T Consensus 101 ys~ll~EIe~IGW~-----kl~~i~-~d~~ls~i~l~~~D------~~R~H~l~l~l~~~yp~~~p~~~~~~P~------ 162 (291)
T PF09765_consen 101 YSNLLKEIEAIGWD-----KLVQIQ-FDDDLSTIKLKIFD------SSRQHYLELKLPSNYPFEPPSCSLDLPI------ 162 (291)
T ss_dssp C-CHHHHHHHHHCG-----CCEEEE-E-CCCSEEEEEEET------TCEEEEEEEETTTTTTTSEEEECS-TTS------
T ss_pred HHHHHHHHHHhccc-----cceEEe-cCCCccEEEEEEEc------CCceEEEEEEECCCCCCCCceeeCCCCc------
Confidence 46788888888653 223322 36688899988872 2357789999999999999975433221
Q ss_pred CCCCeeeccCchhhhhh-cccHHHHHHHHHHHHhc
Q psy17487 86 SVTGAICLDILKDQWAA-AMTLRTVLLSLQALMAA 119 (199)
Q Consensus 86 ~~~G~icl~~l~~~W~p-~~~i~~il~~i~~ll~~ 119 (199)
.+...|.+ ..++.+++...+..+..
T Consensus 163 ---------~~~~~w~~~~ssL~~v~~qF~~~le~ 188 (291)
T PF09765_consen 163 ---------PFSLSWSPSQSSLKDVVQQFQEALES 188 (291)
T ss_dssp ----------HHHHHHCHT-SHHHHHHHHHHHHHH
T ss_pred ---------chhhhhcccccCHHHHHHHHHHHHHH
Confidence 12356888 77898888877777664
No 44
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=88.88 E-value=0.58 Score=29.84 Aligned_cols=28 Identities=11% Similarity=0.190 Sum_probs=21.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHhhcCCch
Q psy17487 163 DSKIQRLTDMGVMSHDARVALSTYNWEL 190 (199)
Q Consensus 163 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 190 (199)
...|+++++|||+.+.++.+|++.|.+-
T Consensus 10 ~~lVd~F~~mGF~~dkVvevlrrlgik~ 37 (55)
T PF09288_consen 10 KDLVDQFENMGFERDKVVEVLRRLGIKS 37 (55)
T ss_dssp HHHHHHHHHHT--HHHHHHHHHHS--SS
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence 4678999999999999999999988743
No 45
>KOG0309|consensus
Probab=86.50 E-value=2.3 Score=40.78 Aligned_cols=68 Identities=22% Similarity=0.304 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEE-EEEEEeCCCCCCC-CCccccccc
Q psy17487 6 AQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNF-VLEIKVPETYPFN-PPKVKFLTK 78 (199)
Q Consensus 6 ~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f-~~~i~fp~~YP~~-pP~v~f~t~ 78 (199)
.+-|..|+..+-. ....+.++-.+-.-..-.+.+.||-... .|-+| ++.|.||.+||.. +|.++|..+
T Consensus 422 pQnLgeE~S~Ig~----k~~nV~fEkidva~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 422 PQNLGEEFSLIGV----KIRNVNFEKIDVADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhhHHhHHhHhhc----cccccceEeeccccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 3557777777754 2345555544433456677777655443 44444 8899999999997 889988743
No 46
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=85.23 E-value=2.9 Score=24.77 Aligned_cols=37 Identities=19% Similarity=0.312 Sum_probs=31.0
Q ss_pred HHHHHHHHhc--CCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 163 DSKIQRLTDM--GVMSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 163 ~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
...+..+.++ .++...++..|...+++++.|++.||.
T Consensus 3 ~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 3 DEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4566777777 788888889999999999999998873
No 47
>KOG4018|consensus
Probab=83.76 E-value=3.8 Score=33.35 Aligned_cols=65 Identities=15% Similarity=0.252 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCC--CCCCcEEEEEEEeCCCCCCCCCccccc
Q psy17487 7 QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDT--PYEGGNFVLEIKVPETYPFNPPKVKFL 76 (199)
Q Consensus 7 ~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~t--py~gg~f~~~i~fp~~YP~~pP~v~f~ 76 (199)
.-...|+..|..- .+..+. .....+...+.+.|.-..+. -|.+ .+.+.+.++++||..+|.+.+.
T Consensus 5 EeQe~E~EaLeSI---Y~de~~-~i~~~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 5 EEQEEELEALESI---YPDEFK-HINSEDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred HHHHHHHHHHHHh---ccchhh-hhhccCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceecc
Confidence 3445666666441 222221 11222333466666632222 1222 7899999999999999999443
No 48
>KOG0011|consensus
Probab=74.37 E-value=9.9 Score=33.02 Aligned_cols=74 Identities=22% Similarity=0.207 Sum_probs=55.2
Q ss_pred hhHHHHHHHhhCHHHHHHHHHHHHHH---------hcCCC---C-CCcchHHHHHHHHhcCCChHHHHHHHhhcCCchHH
Q psy17487 126 QDAVVAKQYKENPEMFTLTARHWTNV---------YAGGP---S-KNPDFDSKIQRLTDMGVMSHDARVALSTYNWELER 192 (199)
Q Consensus 126 ~n~eaa~~~~~d~~~f~~~ak~~~~~---------~a~~~---~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 192 (199)
.|+...+++.++.+.|..+.-+=+.. .+.++ + ..++....|.+|..+||++.-|+.|+-.|.=+=+.
T Consensus 249 ~nP~L~q~Iq~nqe~Fl~mlnep~~~~~~~~~~~~~~~~~~~~I~vtpee~eAIeRL~alGF~ralViqayfACdKNEel 328 (340)
T KOG0011|consen 249 QNPQLLQLIQENQEAFLQLLNEPVEGGDGGGTGAPAAEGPGHQIQVTPEEKEAIERLEALGFPRALVIQAYFACDKNEEL 328 (340)
T ss_pred hCHHHHHHHHHHHHHHHHHhhcccccccccccccccccCCcceEecCHHHHHHHHHHHHhCCcHHHHHHHHHhcCccHHH
Confidence 46667777788888888877643331 00111 1 14567889999999999999999999999999888
Q ss_pred HHHhhhC
Q psy17487 193 ATEAIFT 199 (199)
Q Consensus 193 ~~e~~~~ 199 (199)
|-..||+
T Consensus 329 AAN~Ll~ 335 (340)
T KOG0011|consen 329 AANYLLS 335 (340)
T ss_pred HHHHHHh
Confidence 8888874
No 49
>KOG2561|consensus
Probab=70.19 E-value=24 Score=32.16 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=38.4
Q ss_pred HHHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhh
Q psy17487 149 TNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAI 197 (199)
Q Consensus 149 ~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~ 197 (199)
-++|+..+...---.+.+..|.+||+..+.|..||.+.+-++..+++-|
T Consensus 362 r~k~~n~~~~~wvn~rs~~rL~~mGyer~la~eaL~r~~Ndi~~aldll 410 (568)
T KOG2561|consen 362 RKKYGNTPMKKWVNPRSLERLVSMGYERELAAEALRRNENDIQKALDLL 410 (568)
T ss_pred HHHhcCCCcccccCHHHHHHHHhcchHhHHHHHHHHhccCcHHHHHHhc
Confidence 3466665544333467788999999999999999999999999988654
No 50
>KOG0944|consensus
Probab=66.83 E-value=9.7 Score=36.19 Aligned_cols=57 Identities=25% Similarity=0.334 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCCCCCC---------------cchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 143 LTARHWTNVYAGGPSKN---------------PDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 143 ~~ak~~~~~~a~~~~~~---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
+.|-.|...|...+..+ +--+..+..+.+|||..+.|+.||...+-++++|++=+|+
T Consensus 601 EaA~NWl~~HMdDpd~~~p~vvp~~~~~a~~~~~~e~~v~si~smGf~~~qa~~aL~~~n~nveravDWif~ 672 (763)
T KOG0944|consen 601 EAASNWLMEHMDDPDIDDPFVVPGNSPKADAREVDEESVASIVSMGFSRNQAIKALKATNNNVERAVDWIFS 672 (763)
T ss_pred HHHHHHHHHhccCcccCCceecCCCCCccccCCCChhHheeeeeecCcHHHHHHHHHhcCccHHHHHHHHHh
Confidence 45667888776554221 1235667889999999999999999999999999988763
No 51
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=62.01 E-value=29 Score=22.65 Aligned_cols=36 Identities=25% Similarity=0.541 Sum_probs=28.5
Q ss_pred cchHHHHHHHHhc-CCChHHHHHHHhhcCCchHHHHH
Q psy17487 160 PDFDSKIQRLTDM-GVMSHDARVALSTYNWELERATE 195 (199)
Q Consensus 160 ~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~e 195 (199)
+.-..++..+..+ |....=++..|+..+||.++|+.
T Consensus 10 ~~q~~~v~~~~~~Tgmn~~~s~~cLe~~~Wd~~~Al~ 46 (63)
T smart00804 10 PEQQEMVQAFSAQTGMNAEYSQMCLEDNNWDYERALK 46 (63)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHH
Confidence 3445566666655 88999999999999999999984
No 52
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=60.88 E-value=20 Score=31.23 Aligned_cols=42 Identities=26% Similarity=0.439 Sum_probs=33.7
Q ss_pred cceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccc-ccccCC
Q psy17487 36 YTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLT-KIWHPN 83 (199)
Q Consensus 36 ~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t-~i~HPn 83 (199)
...+.+.| ||.|...+-+|.|...||..||.+.|-. .-|+|-
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd 95 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPD 95 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCC
Confidence 34566556 4999999999999999999999999963 347773
No 53
>KOG0010|consensus
Probab=56.94 E-value=20 Score=32.76 Aligned_cols=41 Identities=22% Similarity=0.483 Sum_probs=35.2
Q ss_pred CcchHHHHHHHHhcCCChHHHH-HHHhhcCCchHHHHHhhhC
Q psy17487 159 NPDFDSKIQRLTDMGVMSHDAR-VALSTYNWELERATEAIFT 199 (199)
Q Consensus 159 ~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~e~~~~ 199 (199)
+..|..-.+.+.+|||...++- .||...+.|+-+|+|.||.
T Consensus 451 e~r~q~QLeQL~~MGF~nre~nlqAL~atgGdi~aAverll~ 492 (493)
T KOG0010|consen 451 EERYQTQLEQLNDMGFLDREANLQALRATGGDINAAVERLLG 492 (493)
T ss_pred hHHHHHHHHHHHhcCCccHHHHHHHHHHhcCcHHHHHHHHhc
Confidence 4467888899999999766655 9999999999999999974
No 54
>KOG2561|consensus
Probab=54.46 E-value=17 Score=33.08 Aligned_cols=35 Identities=34% Similarity=0.499 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhh
Q psy17487 163 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAI 197 (199)
Q Consensus 163 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~ 197 (199)
+....-+++|||....++.||+.+..++++|+-.|
T Consensus 304 d~~lsllv~mGfeesdaRlaLRsc~g~Vd~AvqfI 338 (568)
T KOG2561|consen 304 DETLSLLVGMGFEESDARLALRSCNGDVDSAVQFI 338 (568)
T ss_pred chHHHHHHHcCCCchHHHHHHHhccccHHHHHHHH
Confidence 34466789999999999999999999999998543
No 55
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=50.75 E-value=20 Score=28.17 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=25.0
Q ss_pred ccccccc---CCccCCCCeeeccCchhhhhhcccHHHHHHHHHHH-HhcC
Q psy17487 75 FLTKIWH---PNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL-MAAA 120 (199)
Q Consensus 75 f~t~i~H---PnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~l-l~~p 120 (199)
-.|+.|| +||+ .+|+||+.... .|......-+...... |.++
T Consensus 88 ~~T~Ly~aPf~NV~-~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ 133 (175)
T PF14460_consen 88 PDTPLYHAPFFNVY-SNGSVCWGNNS---LPKISTLASIEAWEDAFFNSP 133 (175)
T ss_pred CCCeeEeCCccccC-CCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCC
Confidence 3466776 6998 49999998741 2334334445555444 4444
No 56
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=48.85 E-value=23 Score=21.97 Aligned_cols=32 Identities=25% Similarity=0.459 Sum_probs=22.5
Q ss_pred HHHHHHhc-CCChHHHHHHHhhcCCchHHHHHh
Q psy17487 165 KIQRLTDM-GVMSHDARVALSTYNWELERATEA 196 (199)
Q Consensus 165 ~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~e~ 196 (199)
.|..+..+ |....=+..-|...+||.+.|...
T Consensus 3 mv~~~s~~Tgmn~~~s~~CL~~n~Wd~~~A~~~ 35 (51)
T PF03943_consen 3 MVQQFSQQTGMNLEWSQKCLEENNWDYERALQN 35 (51)
T ss_dssp HHHHHHHHCSS-CCHHHHHHHHTTT-CCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 34444444 777788888899999999999853
No 57
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=48.57 E-value=42 Score=24.70 Aligned_cols=32 Identities=31% Similarity=0.392 Sum_probs=26.3
Q ss_pred HHHHHhc-CCChHHHHHHHhhcCCchHHHHHhh
Q psy17487 166 IQRLTDM-GVMSHDARVALSTYNWELERATEAI 197 (199)
Q Consensus 166 ~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~e~~ 197 (199)
|+-+.++ |.+...|+.||..++||+-.|.-.|
T Consensus 80 I~lv~~q~gvs~~~A~~AL~~~~gDl~~AI~~L 112 (115)
T PRK06369 80 IELVAEQTGVSEEEARKALEEANGDLAEAILKL 112 (115)
T ss_pred HHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHHH
Confidence 4444444 9999999999999999999988665
No 58
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=46.98 E-value=46 Score=24.56 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=25.5
Q ss_pred HHHHHhc-CCChHHHHHHHhhcCCchHHHHHhh
Q psy17487 166 IQRLTDM-GVMSHDARVALSTYNWELERATEAI 197 (199)
Q Consensus 166 ~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~e~~ 197 (199)
|+-+..+ |.+...|+.||..++||+-.|.-.|
T Consensus 82 I~lV~eq~gvs~e~A~~AL~~~~gDl~~AI~~L 114 (116)
T TIGR00264 82 IELVMKQCNVSKEEARRALEECGGDLAEAIMKL 114 (116)
T ss_pred HHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHh
Confidence 3444444 9999999999999999999887554
No 59
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=42.26 E-value=56 Score=22.48 Aligned_cols=42 Identities=10% Similarity=0.032 Sum_probs=28.4
Q ss_pred ceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487 37 TELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW 80 (199)
Q Consensus 37 ~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 80 (199)
..|.+.+.|+.+.....-+=++...+.++|+. |...+..+-|
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPF 43 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPF 43 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCC
Confidence 57999999988765445566788999999986 6666655533
No 60
>smart00340 HALZ homeobox associated leucin zipper.
Probab=41.93 E-value=31 Score=20.76 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhc
Q psy17487 6 AQRIKREFKEVIKS 19 (199)
Q Consensus 6 ~~RL~~E~~~l~~~ 19 (199)
.+||++|+.+|...
T Consensus 21 NrRL~ke~~eLral 34 (44)
T smart00340 21 NRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHhc
Confidence 58999999999764
No 61
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=41.14 E-value=51 Score=22.65 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=26.3
Q ss_pred HHHHhcCCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487 167 QRLTDMGVMSHDARVALSTYNWELERATEAIF 198 (199)
Q Consensus 167 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~ 198 (199)
++..+.|++...++.||..++.++..|...++
T Consensus 2 ~~~~~~g~~~~~v~~aL~~tSgd~~~a~~~vl 33 (87)
T PF11626_consen 2 KHYEELGYSREFVTHALYATSGDPELARRFVL 33 (87)
T ss_dssp HHHHHHTB-HHHHHHHHHHTTTBHHHHHHHHH
T ss_pred chHHHhCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 45667899999999999999999999887554
No 62
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=39.29 E-value=1.1e+02 Score=20.14 Aligned_cols=47 Identities=19% Similarity=0.140 Sum_probs=37.7
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCC
Q psy17487 112 SLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSK 158 (199)
Q Consensus 112 ~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~~~ 158 (199)
.|+.|+..-++...+.++|...+.+--+.|...+-.-+.++|..+..
T Consensus 6 ~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~ 52 (72)
T cd07981 6 KLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKS 52 (72)
T ss_pred HHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45566666677778999999999999999999998888888776544
No 63
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=38.45 E-value=2.7e+02 Score=27.76 Aligned_cols=65 Identities=26% Similarity=0.426 Sum_probs=41.8
Q ss_pred CCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhc-----CCCCC---chhHHHHHHHh------h--CHHHHHHHH
Q psy17487 82 PNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAA-----AEPDD---PQDAVVAKQYK------E--NPEMFTLTA 145 (199)
Q Consensus 82 PnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~-----p~~~~---p~n~eaa~~~~------~--d~~~f~~~a 145 (199)
||| +|.+.+.- .=.+|+.++|.--+.|--. |-.|+ +.....-+.+. . .|++|.+++
T Consensus 42 PNV---TG~LHmGH-----Al~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~ 113 (877)
T COG0525 42 PNV---TGSLHMGH-----ALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKC 113 (877)
T ss_pred CCC---CCcccchh-----hhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHH
Confidence 787 57777642 2346788888777776544 33343 34444444442 2 589999999
Q ss_pred HHHHHHhcC
Q psy17487 146 RHWTNVYAG 154 (199)
Q Consensus 146 k~~~~~~a~ 154 (199)
.+|..++.+
T Consensus 114 weWk~e~~~ 122 (877)
T COG0525 114 WEWKEESGG 122 (877)
T ss_pred HHHHHHHHH
Confidence 999988743
No 64
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=37.63 E-value=58 Score=28.48 Aligned_cols=28 Identities=21% Similarity=0.635 Sum_probs=23.0
Q ss_pred CcEEEEEEEeCCCCCCCCCcccccccccc
Q psy17487 53 GGNFVLEIKVPETYPFNPPKVKFLTKIWH 81 (199)
Q Consensus 53 gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 81 (199)
+-.|-+.|.+|..||...|.++|++ +||
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS-~yH 332 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS-VYH 332 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe-ecc
Confidence 3457888999999999999999986 344
No 65
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=37.41 E-value=53 Score=27.14 Aligned_cols=40 Identities=18% Similarity=0.304 Sum_probs=26.9
Q ss_pred ccccc---CCccCCCCeeeccCchhhhhh-cccHHHHHHHHHHHHhcCC
Q psy17487 77 TKIWH---PNISSVTGAICLDILKDQWAA-AMTLRTVLLSLQALMAAAE 121 (199)
Q Consensus 77 t~i~H---PnV~~~~G~icl~~l~~~W~p-~~~i~~il~~i~~ll~~p~ 121 (199)
|+.|| +||+ .+|+||+.... .| ..++.+ +......|.+-.
T Consensus 131 T~L~~aPffNV~-~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~S~ 174 (228)
T TIGR03737 131 TKLYQAPLFNVW-SNGEICAGNAR---LPDRPTVAN-ISAWEDAFFSSR 174 (228)
T ss_pred CeeccCCcCccC-CCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhCCc
Confidence 45666 5998 49999997663 45 345666 777777666543
No 66
>KOG1071|consensus
Probab=37.30 E-value=61 Score=28.19 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=29.5
Q ss_pred HHHHHHHHhc-CCChHHHHHHHhhcCCchHHHHHhh
Q psy17487 163 DSKIQRLTDM-GVMSHDARVALSTYNWELERATEAI 197 (199)
Q Consensus 163 ~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~e~~ 197 (199)
.+.+++|.+. |..-..|..||..+|||+..|.|.|
T Consensus 47 ~allk~LR~kTgas~~ncKkALee~~gDl~~A~~~L 82 (340)
T KOG1071|consen 47 KALLKKLREKTGASMVNCKKALEECGGDLVLAEEWL 82 (340)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhCCcHHHHHHHH
Confidence 5566677666 8888999999999999999999765
No 67
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=34.47 E-value=38 Score=25.68 Aligned_cols=25 Identities=28% Similarity=0.665 Sum_probs=22.2
Q ss_pred CCcEEEEEEEeCCCCC-CCCCccccc
Q psy17487 52 EGGNFVLEIKVPETYP-FNPPKVKFL 76 (199)
Q Consensus 52 ~gg~f~~~i~fp~~YP-~~pP~v~f~ 76 (199)
+.|.|.|.-.+|-.|| ..||.|.|.
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 3489999999999999 999999886
No 68
>PF07223 DUF1421: Protein of unknown function (DUF1421); InterPro: IPR010820 This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function.
Probab=34.20 E-value=40 Score=29.80 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=19.0
Q ss_pred chHHHHHHHHhcCCChHHHHH
Q psy17487 161 DFDSKIQRLTDMGVMSHDARV 181 (199)
Q Consensus 161 ~~~~~~~~~~~~g~~~~~~~~ 181 (199)
-++.+|+|++.|||+++-|+.
T Consensus 320 p~ddvidKv~~MGf~rDqV~a 340 (358)
T PF07223_consen 320 PYDDVIDKVASMGFRRDQVRA 340 (358)
T ss_pred cHHHHHHHHHHcCCcHHHHHH
Confidence 489999999999999999983
No 69
>KOG3024|consensus
Probab=33.28 E-value=2.1e+02 Score=24.75 Aligned_cols=40 Identities=15% Similarity=0.373 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCCcchHHHHH-HHHhcCCCh
Q psy17487 137 NPEMFTLTARHWTNVYAGGPSKNPDFDSKIQ-RLTDMGVMS 176 (199)
Q Consensus 137 d~~~f~~~ak~~~~~~a~~~~~~~~~~~~~~-~~~~~g~~~ 176 (199)
++..|.+.+-+|..+++.++.+.|++...+. .|...+...
T Consensus 104 er~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~e~~~~ 144 (312)
T KOG3024|consen 104 ERKTFVRRAIKWSKEFGEGKYGHPELHALLADKLWTEDNVE 144 (312)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcccHH
Confidence 5789999999999999999999998877663 455444333
No 70
>PRK14135 recX recombination regulator RecX; Provisional
Probab=32.66 E-value=1.1e+02 Score=25.21 Aligned_cols=49 Identities=16% Similarity=0.039 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHhhcCCc
Q psy17487 140 MFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWE 189 (199)
Q Consensus 140 ~f~~~ak~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 189 (199)
...+.++.+.++|.... ......+.++-|.+.||+.+.+..+++..+|+
T Consensus 214 ~l~~~~~k~~~k~~~~~-~~k~k~K~~~~L~rrGF~~~~I~~~l~~~~~~ 262 (263)
T PRK14135 214 LLQKELEKAYRKYSKYD-GYELKQKLKQALYRKGFSYDDIDSFLREYGIE 262 (263)
T ss_pred HHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHhccC
Confidence 34445555556665221 12234566678888999999999999999887
No 71
>PRK14136 recX recombination regulator RecX; Provisional
Probab=29.30 E-value=3.4e+02 Score=23.57 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHhhcCC
Q psy17487 139 EMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNW 188 (199)
Q Consensus 139 ~~f~~~ak~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 188 (199)
+.|..-.+.+.++|...+....+..+.++-|...||+.+.+..+|....-
T Consensus 255 DE~E~A~~L~eKK~~~~~~d~kek~K~iRfL~rRGFS~D~I~~vLk~~~d 304 (309)
T PRK14136 255 TEFERAQAVWRKKFGALPQTPAERAKQARFLAARGFSSATIVKLLKVGDD 304 (309)
T ss_pred hHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHHCCCCHHHHHHHHHhchh
Confidence 44554444555666443333334567778899999999999988876543
No 72
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=29.12 E-value=51 Score=26.27 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=22.3
Q ss_pred CCcEEEEEEEeCCCCCCCCCccccc
Q psy17487 52 EGGNFVLEIKVPETYPFNPPKVKFL 76 (199)
Q Consensus 52 ~gg~f~~~i~fp~~YP~~pP~v~f~ 76 (199)
+.|.|.|+=.+|--||..+|-|.|.
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEE
Confidence 3488999999999999999999886
No 73
>COG4008 Predicted metal-binding transcription factor [Transcription]
Probab=27.80 E-value=2.7e+02 Score=20.99 Aligned_cols=62 Identities=19% Similarity=0.251 Sum_probs=43.9
Q ss_pred HHHhhCHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhh
Q psy17487 132 KQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAI 197 (199)
Q Consensus 132 ~~~~~d~~~f~~~ak~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~ 197 (199)
+...-.+++|.+.-++-++..-+... -..+.++-+++.+...+.|+.||...| |+-.|.+-|
T Consensus 87 ~ri~mS~~EYM~lKkqLae~il~~s~---~~~e~v~v~a~a~v~~eeAr~aleeag-Dl~~A~k~l 148 (153)
T COG4008 87 NRINMSPEEYMELKKQLAEYILGHSE---PPVEEVEVLADAFVTPEEAREALEEAG-DLRTAMKIL 148 (153)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhccCC---CcHHHHHHHHHhcCCHHHHHHHHHHcC-CHHHHHHHH
Confidence 33444677888766665554434322 235667888899999999999999999 888887654
No 74
>KOG0662|consensus
Probab=27.18 E-value=39 Score=27.43 Aligned_cols=57 Identities=19% Similarity=0.375 Sum_probs=43.0
Q ss_pred CCCCccccccccccCCccC-CCCeeeccCchhhhh--hcccHHHHHHHHHHHHhcCCCCC
Q psy17487 68 FNPPKVKFLTKIWHPNISS-VTGAICLDILKDQWA--AAMTLRTVLLSLQALMAAAEPDD 124 (199)
Q Consensus 68 ~~pP~v~f~t~i~HPnV~~-~~G~icl~~l~~~W~--p~~~i~~il~~i~~ll~~p~~~~ 124 (199)
+.||.|.|-.+.|...||. .-|.|--.+-..+|. |..++.+-|..|..+|..|+.++
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed~ 226 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEDQ 226 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCcccc
Confidence 4699999999999988883 245444444455664 67788888999999999887654
No 75
>KOG3203|consensus
Probab=26.34 E-value=35 Score=26.48 Aligned_cols=15 Identities=27% Similarity=0.609 Sum_probs=11.6
Q ss_pred cccccCCccCCCCeeec
Q psy17487 77 TKIWHPNISSVTGAICL 93 (199)
Q Consensus 77 t~i~HPnV~~~~G~icl 93 (199)
.|+|||+.| .|.+|+
T Consensus 49 KPiYhP~~D--cGD~VV 63 (165)
T KOG3203|consen 49 KPIYHPSTD--CGDHVV 63 (165)
T ss_pred CCccCCccC--CCCEEE
Confidence 468999998 576665
No 76
>KOG0944|consensus
Probab=26.34 E-value=1.1e+02 Score=29.52 Aligned_cols=32 Identities=34% Similarity=0.322 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHhhc-CCchHHHH
Q psy17487 163 DSKIQRLTDMGVMSHDARVALSTY-NWELERAT 194 (199)
Q Consensus 163 ~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~ 194 (199)
+..+.+|++|||..++|+-|+-.. +-+.|+|.
T Consensus 572 ~s~i~qL~~MGFp~eac~rAly~tgN~~aEaA~ 604 (763)
T KOG0944|consen 572 RSVISQLVEMGFPEEACRRALYYTGNSGAEAAS 604 (763)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhhhcCccHHHHH
Confidence 678899999999999999888777 66666665
No 77
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=26.05 E-value=1.3e+02 Score=28.17 Aligned_cols=54 Identities=24% Similarity=0.203 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCCCCCCc--------------chHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHh
Q psy17487 143 LTARHWTNVYAGGPSKNP--------------DFDSKIQRLTDMGVMSHDARVALSTYNWELERATEA 196 (199)
Q Consensus 143 ~~ak~~~~~~a~~~~~~~--------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~ 196 (199)
+.|-.|.-+|...+..+. --+.+++.+.++|+..+.|+.||-..+-++..+++-
T Consensus 588 EsAMNWLFqHMdDPdlndP~~~~~~vPKkDkeVdE~~~~Slle~Gln~n~~Rkal~~~n~d~~r~V~w 655 (749)
T COG5207 588 ESAMNWLFQHMDDPDLNDPFVPPPNVPKKDKEVDESKARSLLENGLNPNLCRKALMDMNTDSKRRVVW 655 (749)
T ss_pred HHHHHHHHhhccCcccCCCCCCCCCCCcccccccHHHHHHHHHcCCCHHHHHHHHHHccCCchheEEE
Confidence 567788888876653211 136788999999999999999999999998887753
No 78
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=25.63 E-value=1.5e+02 Score=19.52 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=35.5
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCCC
Q psy17487 112 SLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKN 159 (199)
Q Consensus 112 ~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~~~~ 159 (199)
.|+.|+..-+|...+++++..++.+=.+.|...+-..+.+.|..+..+
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~ 51 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSS 51 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 467777777888899999999999999999999998888888777653
No 79
>cd05777 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase. The 3'-5' exonuclease domain of eukaryotic DNA polymerase delta. DNA polymerase delta is a family-B DNA polymerase with a catalytic subunit that contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (alpha and epsilon are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase delta is the enzyme responsible for both elongation and maturation of Okazaki fragments on the lagging strand. It is also implicated in mismatch repair (MMR) and base excision repair (BER). The catalytic subunit displays both polymerase and 3'-5' exonuclease activities. The exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic
Probab=25.14 E-value=2.2e+02 Score=23.03 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=37.8
Q ss_pred CCeeeccCc---hhhhh-hcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHH
Q psy17487 88 TGAICLDIL---KDQWA-AAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNV 151 (199)
Q Consensus 88 ~G~icl~~l---~~~W~-p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~ 151 (199)
.|++++|+. +..++ +++++..|...+. ...-. +.--.++.++|..+++...+.++.+.+.
T Consensus 149 ~GR~~iD~~~~~~~~~kl~sy~L~~Va~~~L---g~~k~-d~~~~~i~~~~~~~~~~~~~l~~Y~~~D 212 (230)
T cd05777 149 EGRIQFDLLQVIQRDYKLRSYSLNSVSAHFL---GEQKE-DVHYSIITDLQNGNPETRRRLAVYCLKD 212 (230)
T ss_pred cCEEeeeHHHHHHHhcCcccCcHHHHHHHHh---CCCCC-CCCHHHHHHHHccCHhHhHHHHHhhHHH
Confidence 699999888 23333 5778887765433 33222 2222567778888888877777766643
No 80
>KOG4445|consensus
Probab=24.73 E-value=73 Score=27.57 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=21.7
Q ss_pred cEEEEEEEeCCCCCCCCCccccccc
Q psy17487 54 GNFVLEIKVPETYPFNPPKVKFLTK 78 (199)
Q Consensus 54 g~f~~~i~fp~~YP~~pP~v~f~t~ 78 (199)
-.+.+.+..++.||...|.|+...|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 3577889999999999999998765
No 81
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=24.38 E-value=79 Score=18.37 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=16.2
Q ss_pred ChHHHHHHHhhcCCchHHHHHhh
Q psy17487 175 MSHDARVALSTYNWELERATEAI 197 (199)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~e~~ 197 (199)
+......||..++|+...|.+.|
T Consensus 6 E~~~i~~aL~~~~gn~~~aA~~L 28 (42)
T PF02954_consen 6 EKQLIRQALERCGGNVSKAARLL 28 (42)
T ss_dssp HHHHHHHHHHHTTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHH
Confidence 34455688999999998887654
No 82
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=24.22 E-value=1.4e+02 Score=17.65 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=19.6
Q ss_pred CChHHHHHHHhhcCCchHHHHHhhh
Q psy17487 174 VMSHDARVALSTYNWELERATEAIF 198 (199)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~e~~~ 198 (199)
...+..-.+|..++.|+-+|.|.++
T Consensus 15 ~kr~~Le~iL~~C~GDvv~AIE~~l 39 (39)
T PF03474_consen 15 QKRSVLELILQRCNGDVVQAIEQFL 39 (39)
T ss_pred CChHHHHHHHHHcCCcHHHHHHHhC
Confidence 3444455889999999999999875
No 83
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=23.32 E-value=77 Score=24.50 Aligned_cols=24 Identities=21% Similarity=0.625 Sum_probs=21.4
Q ss_pred CcEEEEEEEeCCCCC-----CCCCccccc
Q psy17487 53 GGNFVLEIKVPETYP-----FNPPKVKFL 76 (199)
Q Consensus 53 gg~f~~~i~fp~~YP-----~~pP~v~f~ 76 (199)
.|.|.|.-.+|--|| ..||-|.|.
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~ 100 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVS 100 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEE
Confidence 488999999999999 799999886
No 84
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=23.13 E-value=2.1e+02 Score=20.44 Aligned_cols=27 Identities=19% Similarity=0.083 Sum_probs=20.1
Q ss_pred CcchHHHHHHHHhcCCChHHHHHHHhh
Q psy17487 159 NPDFDSKIQRLTDMGVMSHDARVALST 185 (199)
Q Consensus 159 ~~~~~~~~~~~~~~g~~~~~~~~~~~~ 185 (199)
.....+.+..|.+.||+.+.+..+++.
T Consensus 92 ~~~~~K~~~~L~rrGF~~~~i~~vi~~ 118 (121)
T PF02631_consen 92 RKRKQKLIRFLMRRGFSYDVIRRVISE 118 (121)
T ss_dssp HHHHHHHHHHHHHTT--HHHHHHHCHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHhh
Confidence 345577778999999999999988776
No 85
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=22.34 E-value=4.1e+02 Score=22.06 Aligned_cols=32 Identities=13% Similarity=0.317 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHH
Q psy17487 137 NPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRL 169 (199)
Q Consensus 137 d~~~f~~~ak~~~~~~a~~~~~~~~~~~~~~~~ 169 (199)
.+..|.+.|-.|+ +..+.+.++|++...+.+.
T Consensus 68 ~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~ 99 (260)
T PF04190_consen 68 ERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEK 99 (260)
T ss_dssp THHHHHHHHHHHH-HTSS-TT--HHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHH
Confidence 5889999999999 7777788888887776543
No 86
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=21.10 E-value=3.6e+02 Score=20.08 Aligned_cols=50 Identities=18% Similarity=0.155 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHhhcCCch
Q psy17487 138 PEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWEL 190 (199)
Q Consensus 138 ~~~f~~~ak~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 190 (199)
|+.-.+.|+..- ..+.+.+...++++.=|...|+..+++..||...+-..
T Consensus 2 Re~li~~A~~FL---~~p~V~~sp~~~k~~FL~sKGLt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 2 REDLIEQAVKFL---QDPKVRNSPLEKKIAFLESKGLTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHHHHHHH---CTTTCCCS-HHHHHHHHHHCT--HHHHHHHHHHHT--S
T ss_pred HHHHHHHHHHHh---CCcccccCCHHHHHHHHHcCCCCHHHHHHHHHhcCCcc
Confidence 344444444333 23455566788899999999999999998888876554
No 87
>KOG2851|consensus
Probab=20.97 E-value=1.3e+02 Score=26.75 Aligned_cols=33 Identities=27% Similarity=0.524 Sum_probs=25.5
Q ss_pred ccCCCCeeeccCc---hhhhhhcc--cHHHHHHHHHHH
Q psy17487 84 ISSVTGAICLDIL---KDQWAAAM--TLRTVLLSLQAL 116 (199)
Q Consensus 84 V~~~~G~icl~~l---~~~W~p~~--~i~~il~~i~~l 116 (199)
|.|++|.||..+= -+...|.- +|.+++..|.++
T Consensus 332 VHP~Tg~VcVPidv~~~d~Fdp~~vPti~~l~eEl~~~ 369 (412)
T KOG2851|consen 332 VHPKTGRVCVPIDVSKVDEFDPEKVPTISDLLEELESL 369 (412)
T ss_pred ccCCCCceEeecchhhccccCcccCCcHHHHHHHHhhc
Confidence 6678999999876 24566633 899999988887
No 88
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=20.55 E-value=2.5e+02 Score=19.30 Aligned_cols=57 Identities=12% Similarity=0.082 Sum_probs=34.5
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHhcCCCCCCcch-------HHHHHHHHhcCCChHHHHHHHhhc
Q psy17487 128 AVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDF-------DSKIQRLTDMGVMSHDARVALSTY 186 (199)
Q Consensus 128 ~eaa~~~~~d~~~f~~~ak~~~~~~a~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~~~~ 186 (199)
.+...++++|+++|....++..+...... .++. -..|+...+.+.....+.+.++..
T Consensus 7 D~L~~LA~~dPe~fe~lr~~~~ee~I~~a--~~~~q~rL~~lQ~~Id~~~~~~knP~~~~~~l~~~ 70 (83)
T PF11333_consen 7 DELKELAQNDPEAFEQLRQELIEEMIESA--PEEMQPRLRALQFHIDMQRSRCKNPLHRCVLLSRM 70 (83)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 46678899999999998888777543331 1222 233444445555555555555543
No 89
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=20.28 E-value=1.7e+02 Score=27.51 Aligned_cols=33 Identities=36% Similarity=0.396 Sum_probs=25.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHhhcCC-chHHHHH
Q psy17487 163 DSKIQRLTDMGVMSHDARVALSTYNW-ELERATE 195 (199)
Q Consensus 163 ~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~e 195 (199)
...|++|++|||...++.-||...|- |.|-|.-
T Consensus 559 qs~I~qL~~mGfp~~~~~rAL~~tgNqDaEsAMN 592 (749)
T COG5207 559 QSLIRQLVDMGFPEEDAARALGITGNQDAESAMN 592 (749)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhhccCcchHHHHH
Confidence 56789999999999999988876654 4444443
Done!