Query psy17487
Match_columns 199
No_of_seqs 182 out of 1490
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 23:44:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17487.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17487hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k9o_A Ubiquitin-conjugating e 100.0 5.5E-63 1.9E-67 398.1 20.2 199 1-199 2-200 (201)
2 3e46_A Ubiquitin-conjugating e 100.0 2.5E-61 8.5E-66 399.2 21.7 199 1-199 54-252 (253)
3 2pwq_A Ubiquitin conjugating e 100.0 1.2E-58 4E-63 375.6 18.1 194 2-199 21-214 (216)
4 1tte_A Ubiquitin-conjugating e 100.0 3.2E-54 1.1E-58 349.4 16.0 184 4-190 2-197 (215)
5 2bep_A Ubiquitin-conjugating e 100.0 1E-50 3.4E-55 315.6 17.4 155 1-155 5-159 (159)
6 2c2v_B Ubiquitin-conjugating e 100.0 1.1E-50 3.7E-55 313.9 14.5 152 1-156 2-153 (154)
7 4gpr_A Ubiquitin-conjugating e 100.0 6.5E-50 2.2E-54 308.6 18.9 150 2-155 2-151 (151)
8 1ayz_A UBC2, ubiquitin-conjuga 100.0 2E-50 6.9E-55 316.6 15.7 154 1-158 1-154 (169)
9 2aak_A UBC1, ubiquitin conjuga 100.0 1.1E-49 3.8E-54 307.6 17.7 151 1-155 1-151 (152)
10 1zdn_A Ubiquitin-conjugating e 100.0 7.4E-50 2.5E-54 310.4 16.7 149 1-153 10-158 (158)
11 1yh2_A HSPC150 protein similar 100.0 1.9E-49 6.5E-54 311.2 18.8 163 2-169 2-168 (169)
12 2ayv_A Ubiquitin-conjugating e 100.0 5.7E-49 1.9E-53 307.5 18.1 148 2-153 19-166 (166)
13 1z2u_A Ubiquitin-conjugating e 100.0 5.2E-49 1.8E-53 303.2 17.7 149 2-154 2-150 (150)
14 1fxt_A Ubiquitin-conjugating e 100.0 2E-49 6.7E-54 305.3 14.9 147 5-154 2-149 (149)
15 2ucz_A UBC7, ubiquitin conjuga 100.0 5.5E-49 1.9E-53 307.5 17.6 150 1-154 1-164 (165)
16 2c4o_A Ubiquitin-conjugating e 100.0 1.4E-48 4.8E-53 305.0 18.5 148 3-154 18-165 (165)
17 2e2c_A Ubiquitin conjugating e 100.0 6.2E-49 2.1E-53 304.6 16.1 150 1-155 6-155 (156)
18 2r0j_A Ubiquitin carrier prote 100.0 5.1E-49 1.7E-53 303.0 15.5 147 5-155 2-148 (149)
19 3h8k_A Ubiquitin-conjugating e 100.0 2.2E-48 7.6E-53 303.8 18.0 149 2-154 1-163 (164)
20 2gjd_A Ubiquitin-conjugating e 100.0 1.6E-48 5.5E-53 302.6 16.8 150 1-154 1-157 (157)
21 1jat_A Ubiquitin-conjugating e 100.0 4.4E-49 1.5E-53 305.2 12.9 149 4-156 5-153 (155)
22 2f4z_A Tgtwinscan_2721 - E2 do 100.0 2.2E-48 7.4E-53 310.6 17.1 151 4-154 32-192 (193)
23 3rcz_B SUMO-conjugating enzyme 100.0 3.4E-48 1.2E-52 302.3 16.8 149 2-154 8-163 (163)
24 2grr_A Ubiquitin-conjugating e 100.0 4.5E-48 1.5E-52 301.2 16.9 151 1-155 4-161 (161)
25 3bzh_A Ubiquitin-conjugating e 100.0 1.9E-47 6.6E-52 305.4 18.7 148 3-154 47-194 (194)
26 1i7k_A Ubiquitin-conjugating e 100.0 7.1E-48 2.4E-52 304.4 15.5 151 1-156 27-177 (179)
27 1yrv_A Ubiquitin-conjugating l 100.0 2.7E-47 9.1E-52 298.7 15.3 147 1-151 20-168 (169)
28 2y9m_A Ubiquitin-conjugating e 100.0 7.2E-47 2.5E-51 297.3 17.6 154 1-154 3-168 (172)
29 1wzv_A Ubiquitin-conjugating e 100.0 4.1E-47 1.4E-51 294.1 15.2 148 4-156 4-153 (155)
30 2onu_A Ubiquitin-conjugating e 100.0 1.7E-47 5.8E-52 295.3 12.0 147 4-156 2-149 (152)
31 2z5d_A Ubiquitin-conjugating e 100.0 1.2E-46 4.2E-51 297.0 13.4 145 4-155 25-170 (179)
32 3fn1_B NEDD8-conjugating enzym 100.0 4.2E-46 1.4E-50 291.7 16.1 147 3-154 13-167 (167)
33 3rz3_A Ubiquitin-conjugating e 100.0 9.1E-46 3.1E-50 293.6 16.3 148 3-154 6-173 (183)
34 2awf_A Ubiquitin-conjugating e 100.0 6.3E-46 2.2E-50 291.8 12.7 142 3-148 16-172 (172)
35 1yf9_A Ubiquitin carrier prote 100.0 1.3E-45 4.5E-50 289.6 13.8 145 4-155 12-157 (171)
36 1c4z_D UBCH7, ubiquitin conjug 100.0 4.2E-46 1.4E-50 288.2 8.5 147 5-156 3-151 (154)
37 1y8x_A Ubiquitin-conjugating e 100.0 6.4E-45 2.2E-49 283.1 15.2 142 3-151 5-147 (160)
38 4ddg_A Ubiquitin-conjugating e 100.0 2.3E-44 8E-49 316.0 19.1 152 3-158 2-153 (399)
39 2nvu_C NEDD8-conjugating enzym 100.0 1.6E-44 5.6E-49 285.6 14.7 143 2-151 24-167 (180)
40 3o2u_A NEDD8-conjugating enzym 100.0 3.5E-44 1.2E-48 285.9 12.1 142 3-151 28-176 (190)
41 4ds2_A Ubiquitin-conjugating e 100.0 2.6E-43 8.7E-48 275.9 11.6 145 1-146 5-163 (167)
42 3ceg_A Baculoviral IAP repeat- 100.0 1.4E-40 4.6E-45 282.6 16.5 154 1-155 73-244 (323)
43 2fo3_A Ubiquitin-conjugating e 100.0 1.3E-39 4.3E-44 243.6 12.4 118 1-123 4-122 (125)
44 2q0v_A Ubiquitin-conjugating e 100.0 3.4E-40 1.2E-44 255.2 8.4 131 3-137 20-156 (156)
45 2a4d_A Ubiquitin-conjugating e 100.0 2.1E-39 7.3E-44 251.4 12.5 127 3-132 24-157 (160)
46 1jat_B Ubiquitin-conjugating e 100.0 3E-40 1E-44 250.9 5.4 131 1-134 2-138 (138)
47 2h2y_A Ubiquitin-conjugating e 100.0 1.6E-38 5.5E-43 240.8 13.6 115 4-122 20-135 (136)
48 2hlw_A Ubiquitin-conjugating e 100.0 9.9E-39 3.4E-43 250.1 9.5 125 4-131 35-166 (170)
49 2a7l_A Hypothetical ubiquitin- 100.0 4.3E-38 1.5E-42 238.3 10.0 113 1-118 20-136 (136)
50 1zuo_A Hypothetical protein LO 100.0 1.4E-37 4.6E-42 247.0 3.3 142 1-151 24-179 (186)
51 2f4w_A Ubiquitin-conjugating e 100.0 1.1E-35 3.7E-40 236.3 14.3 116 3-124 13-131 (187)
52 2z6o_A UFM1-conjugating enzyme 99.9 1.2E-27 4.1E-32 183.7 4.8 113 6-136 34-161 (172)
53 3r3q_A Suppressor protein STP2 99.8 1.2E-19 4E-24 140.3 8.9 116 7-124 31-161 (162)
54 3kpa_A Probable ubiquitin fold 99.7 1.1E-18 3.9E-23 131.0 5.4 95 6-110 36-145 (168)
55 3obq_A Tumor susceptibility ge 99.5 6.5E-14 2.2E-18 106.3 8.5 80 34-120 51-139 (146)
56 2cwb_A Chimera of immunoglobul 99.2 7.7E-12 2.6E-16 89.9 4.0 80 120-199 21-104 (108)
57 1ify_A HHR23A, UV excision rep 98.5 8.5E-08 2.9E-12 59.3 4.2 42 158-199 4-45 (49)
58 2jy5_A Ubiquilin-1; UBA, alter 98.5 3.2E-07 1.1E-11 57.4 5.7 42 158-199 8-50 (52)
59 1z96_A DNA-damage, UBA-domain 98.4 5.5E-07 1.9E-11 53.0 5.0 39 160-198 2-40 (40)
60 1vg5_A RSGI RUH-014, rhomboid 98.4 6.5E-07 2.2E-11 59.8 5.4 41 159-199 26-66 (73)
61 2knz_A Ubiquilin-4; cytoplasm, 98.3 3.3E-07 1.1E-11 57.5 3.6 41 159-199 8-49 (53)
62 2bwb_A Ubiquitin-like protein 98.3 1.1E-06 3.8E-11 53.5 4.8 40 160-199 5-45 (46)
63 2g3q_A Protein YBL047C; endocy 98.2 1.3E-06 4.6E-11 52.2 4.6 37 163-199 5-41 (43)
64 2dah_A Ubiquilin-3; UBA domain 98.2 1.9E-06 6.5E-11 54.2 4.6 41 159-199 6-47 (54)
65 1vej_A Riken cDNA 4931431F19; 98.1 3.1E-06 1.1E-10 56.6 4.7 41 159-199 26-67 (74)
66 1wr1_B Ubiquitin-like protein 98.1 2.6E-06 8.9E-11 54.4 3.8 41 159-199 14-55 (58)
67 1veg_A NEDD8 ultimate buster-1 98.1 3.3E-06 1.1E-10 57.7 4.1 38 162-199 29-66 (83)
68 1wji_A Tudor domain containing 98.0 4.5E-06 1.5E-10 54.2 4.2 38 162-199 9-46 (63)
69 1wiv_A UBP14, ubiquitin-specif 98.0 6.6E-06 2.3E-10 54.9 4.1 38 162-199 29-66 (73)
70 2dak_A Ubiquitin carboxyl-term 97.9 1.3E-05 4.3E-10 52.0 4.4 39 161-199 8-46 (63)
71 1dv0_A DNA repair protein HHR2 97.9 7.2E-06 2.5E-10 50.1 2.5 40 160-199 2-41 (47)
72 1wj7_A Hypothetical protein (R 97.8 1.7E-05 5.7E-10 56.2 4.6 41 159-199 36-77 (104)
73 2ekk_A UBA domain from E3 ubiq 97.8 3.7E-05 1.3E-09 46.7 5.0 37 162-199 9-45 (47)
74 2cp8_A NEXT to BRCA1 gene 1 pr 97.8 4.8E-05 1.6E-09 47.5 5.4 41 158-198 5-46 (54)
75 2dkl_A Trinucleotide repeat co 97.8 2.9E-05 1E-09 53.3 4.8 37 163-199 22-58 (85)
76 2cpw_A CBL-interacting protein 97.7 4.2E-05 1.4E-09 49.7 4.5 48 147-199 9-57 (64)
77 2dag_A Ubiquitin carboxyl-term 97.6 6.5E-05 2.2E-09 50.2 4.5 38 162-199 9-47 (74)
78 2dai_A Ubadc1, ubiquitin assoc 97.6 7.7E-05 2.6E-09 50.9 4.7 38 162-199 29-66 (83)
79 1whc_A RSGI RUH-027, UBA/UBX 3 97.5 0.0001 3.5E-09 47.8 4.2 36 163-198 10-46 (64)
80 1vek_A UBP14, ubiquitin-specif 97.4 0.00012 4.3E-09 50.0 4.1 38 162-199 29-67 (84)
81 2d9s_A CBL E3 ubiquitin protei 97.4 0.00035 1.2E-08 43.1 5.5 41 158-198 5-45 (53)
82 2dna_A Unnamed protein product 97.4 0.00019 6.4E-09 46.9 4.1 41 159-199 16-57 (67)
83 2crn_A Ubash3A protein; compac 97.4 0.00014 4.7E-09 47.2 3.5 36 163-198 10-46 (64)
84 1wgn_A UBAP1, ubiquitin associ 97.3 0.00018 6E-09 45.9 3.3 41 159-199 16-56 (63)
85 2qsf_X RAD23, UV excision repa 97.1 0.00047 1.6E-08 53.1 4.8 74 126-199 59-167 (171)
86 2lbc_A Ubiquitin carboxyl-term 97.1 0.00048 1.6E-08 50.5 4.5 39 161-199 77-115 (126)
87 1oqy_A HHR23A, UV excision rep 97.1 0.00021 7.3E-09 61.6 2.6 75 125-199 269-362 (368)
88 2ooa_A E3 ubiquitin-protein li 97.0 0.0011 3.9E-08 40.6 4.9 37 162-198 11-47 (52)
89 4ae4_A Ubiquitin-associated pr 96.8 0.0012 4E-08 48.0 4.4 38 162-199 76-113 (118)
90 1oqy_A HHR23A, UV excision rep 96.7 0.0012 4.2E-08 56.8 4.6 42 158-199 164-205 (368)
91 2oo9_A E3 ubiquitin-protein li 96.7 0.004 1.4E-07 37.1 5.1 39 160-198 2-40 (46)
92 2juj_A E3 ubiquitin-protein li 96.3 0.0069 2.4E-07 37.4 4.7 40 159-198 4-43 (56)
93 2ebm_A RWD domain-containing p 95.8 0.03 1E-06 40.5 7.0 67 6-77 12-78 (128)
94 4ae4_A Ubiquitin-associated pr 95.8 0.014 5E-07 42.1 5.1 40 159-198 5-44 (118)
95 3zqs_A E3 ubiquitin-protein li 95.2 0.12 4.2E-06 40.1 9.0 85 7-119 4-88 (186)
96 2day_A Ring finger protein 25; 95.2 0.092 3.1E-06 37.8 7.8 69 7-78 11-83 (128)
97 2cos_A Serine/threonine protei 95.1 0.039 1.3E-06 34.0 4.5 39 160-198 7-46 (54)
98 2yz0_A Serine/threonine-protei 94.4 0.21 7.3E-06 36.3 8.1 68 6-77 12-85 (138)
99 3e21_A HFAF1, FAS-associated f 94.3 0.052 1.8E-06 32.4 3.7 37 161-197 4-42 (45)
100 2ebk_A RWD domain-containing p 92.9 0.24 8.3E-06 35.6 6.1 67 7-77 10-79 (128)
101 2cp9_A EF-TS, EF-TSMT, elongat 91.1 0.32 1.1E-05 31.2 4.2 35 164-198 11-46 (64)
102 2daw_A RWD domain containing p 90.9 0.68 2.3E-05 34.5 6.7 23 55-77 76-98 (154)
103 1v92_A NSFL1 cofactor P47; 3-h 90.9 0.4 1.4E-05 28.0 4.4 36 163-198 6-42 (46)
104 1ukx_A GCN2, GCN2 EIF2alpha ki 89.6 0.17 5.7E-06 36.8 2.3 68 6-77 12-86 (137)
105 2dax_A Protein C21ORF6; RWD do 88.8 0.3 1E-05 36.2 3.2 23 55-77 74-96 (152)
106 2dam_A ETEA protein; KIAA0887, 88.6 0.69 2.3E-05 29.7 4.4 39 160-198 16-56 (67)
107 1wgl_A TOLL-interacting protei 87.9 1.2 4.3E-05 27.8 5.2 38 161-198 8-47 (59)
108 2dhy_A CUE domain-containing p 87.7 1.3 4.5E-05 28.5 5.3 40 159-198 15-56 (67)
109 2l2d_A OTU domain-containing p 87.6 1.1 3.9E-05 28.4 4.8 38 161-198 16-57 (73)
110 2dal_A Protein KIAA0794; FAS a 87.0 1 3.6E-05 28.3 4.5 39 160-198 13-52 (62)
111 2dzl_A Protein FAM100B; UBA-li 82.7 2.4 8.2E-05 27.1 4.8 35 164-198 19-54 (66)
112 4dbg_B Ring finger protein 31; 80.7 9.6 0.00033 28.6 8.0 62 126-197 76-138 (162)
113 1otr_A Protein CUE2; protein-p 79.1 4.4 0.00015 24.3 4.7 37 162-198 4-42 (49)
114 1q02_A Sequestosome 1; helical 70.3 6.5 0.00022 23.8 3.8 41 157-197 5-47 (52)
115 3ihp_A Ubiquitin carboxyl-term 64.7 5.6 0.00019 37.7 4.2 38 162-199 720-757 (854)
116 2ejs_A Autocrine motility fact 63.8 18 0.00062 22.4 5.1 40 158-198 9-50 (58)
117 1p3q_Q VPS9P, vacuolar protein 61.6 6 0.00021 24.2 2.5 39 161-199 11-51 (54)
118 2ekf_A Ancient ubiquitous prot 60.6 27 0.00093 21.8 5.5 41 158-199 9-51 (61)
119 1oai_A Nuclear RNA export fact 59.0 22 0.00075 21.9 4.9 34 162-195 7-41 (59)
120 2jp7_A MRNA export factor MEX6 47.7 31 0.0011 21.1 4.2 33 163-195 7-40 (57)
121 1tr8_A Conserved protein (MTH1 40.6 41 0.0014 23.1 4.4 32 166-197 69-101 (102)
122 3k6g_A Telomeric repeat-bindin 40.3 36 0.0012 23.6 4.0 33 166-198 17-50 (111)
123 4g3o_A E3 ubiquitin-protein li 27.8 1.1E+02 0.0037 18.8 4.4 37 162-199 17-55 (58)
124 3rls_A YAF9, protein AF-9 homo 25.4 1E+02 0.0036 23.3 4.7 45 34-80 30-74 (175)
125 2di0_A Activating signal coint 21.9 1.6E+02 0.0056 18.7 5.5 42 157-198 8-51 (71)
126 3u3c_B Paxillin LD2 peptide; 4 21.8 69 0.0024 15.8 2.1 15 5-19 6-20 (26)
127 3qrl_A Transcription initiatio 21.7 1.3E+02 0.0045 21.8 4.5 44 35-80 31-77 (140)
128 2jrw_A Cyclic extended PEP.1; 21.3 49 0.0017 16.4 1.5 17 67-83 4-20 (26)
No 1
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=5.5e-63 Score=398.11 Aligned_cols=199 Identities=72% Similarity=1.175 Sum_probs=189.7
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW 80 (199)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 80 (199)
||+.|.+||++||++|+++...++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus 2 Ms~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 81 (201)
T 3k9o_A 2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 81 (201)
T ss_dssp --CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred CcHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcc
Confidence 88899999999999998853334679999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCCCc
Q psy17487 81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNP 160 (199)
Q Consensus 81 HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~~~~~ 160 (199)
||||+..+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+++...+
T Consensus 82 HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~~~~~~ 161 (201)
T 3k9o_A 82 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSP 161 (201)
T ss_dssp BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCH
T ss_pred cCCCcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcccccccc
Confidence 99999669999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred chHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 161 DFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 161 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
+++++|++|++|||+++.|+.||+..+||+++|+|+||+
T Consensus 162 ~~eekV~~l~~MGf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 162 EYTKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 999999999999999999999999999999999999985
No 2
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=2.5e-61 Score=399.21 Aligned_cols=199 Identities=72% Similarity=1.167 Sum_probs=191.5
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW 80 (199)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 80 (199)
|++.|.+||++||++|+++...++.|+++.+.++|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|+||
T Consensus 54 Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~ 133 (253)
T 3e46_A 54 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 133 (253)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCc
Confidence 78889999999999998853334689999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCCCc
Q psy17487 81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNP 160 (199)
Q Consensus 81 HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~~~~~ 160 (199)
||||+..+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+++..++
T Consensus 134 HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~~~~~~~ 213 (253)
T 3e46_A 134 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSP 213 (253)
T ss_dssp BTTBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCCSCCCH
T ss_pred cCCccCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhcccccCcc
Confidence 99999669999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 161 DFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 161 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
+++++|++|++|||++++|+.||+..+||+++|+|+||+
T Consensus 214 ~~~~~v~~l~~mgf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 214 EYTKKIENLCAAGFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 999999999999999999999999999999999999984
No 3
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=1.2e-58 Score=375.58 Aligned_cols=194 Identities=47% Similarity=0.845 Sum_probs=146.7
Q ss_pred chHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccccc
Q psy17487 2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWH 81 (199)
Q Consensus 2 s~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 81 (199)
++.+.+||++|+++|+++ ++.|+.+.+.++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus 21 ~s~a~~RL~kEl~~l~~~---~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~H 97 (216)
T 2pwq_A 21 GSKELLRLQKELKDIENE---NVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWH 97 (216)
T ss_dssp SCHHHHHHHHHHHHHHHS---CTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred cCHHHHHHHHHHHHHHhC---CCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcC
Confidence 467899999999999986 56899999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCCCcc
Q psy17487 82 PNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPD 161 (199)
Q Consensus 82 PnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~~~~~~ 161 (199)
|||+..+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||.++... +
T Consensus 98 PNI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~~~~~~-~ 176 (216)
T 2pwq_A 98 PNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATGPKEE-P 176 (216)
T ss_dssp TTBCTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCCC-----
T ss_pred CCCcCCCCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCCCccc-c
Confidence 999966899999999999999999999999999999999999999999999999999999999999999999987654 5
Q ss_pred hHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 162 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 162 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
++.+++++++|||+++.++.||+..+|+.+.|+|+||+
T Consensus 177 ~~~~v~~~~~mgf~~~~~~~al~~~~~~~~~~~~~l~~ 214 (216)
T 2pwq_A 177 REVIIKKITEMGFSEDQAKNALIKANWNETLALNTLLE 214 (216)
T ss_dssp --------------------------------------
T ss_pred hhhHHHHHHHcCCCHHHHHHHHHHcCCchHHHHHHHhc
Confidence 68999999999999999999999999999999999984
No 4
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=3.2e-54 Score=349.36 Aligned_cols=184 Identities=44% Similarity=0.778 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcceEEEecCC-CcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccC
Q psy17487 4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHP 82 (199)
Q Consensus 4 ~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~d-n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 82 (199)
.+.+||++|+++|+++ ++.|+++.+.++ ++++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||
T Consensus 2 ~a~~RL~kEl~~l~~~---~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HP 78 (215)
T 1tte_A 2 SRAKRIMKEIQAVKDD---PAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHP 78 (215)
T ss_dssp TTHHHHHHHHHHHHTT---TCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCS
T ss_pred hHHHHHHHHHHHHHhC---CCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccC
Confidence 3689999999999886 678999999877 566999999999999999999999999999999999999999999999
Q ss_pred CccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCCC--c
Q psy17487 83 NISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKN--P 160 (199)
Q Consensus 83 nV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~~~~--~ 160 (199)
||+..+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|++.|.++||+|+++||..+... +
T Consensus 79 NI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~~~~~~~~~ 158 (215)
T 1tte_A 79 NISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASETSNGQKG 158 (215)
T ss_dssp SSCSSSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSSCCCSCCSSC
T ss_pred cCcCCCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhccCCCccccc
Confidence 99955999999999999999999999999999999999999999999999999999999999999999999886431 1
Q ss_pred ---c------hHHHHHHHHhcCCChHHHHHHHhhcCCch
Q psy17487 161 ---D------FDSKIQRLTDMGVMSHDARVALSTYNWEL 190 (199)
Q Consensus 161 ---~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 190 (199)
+ -+.+|+++++|||+.++|+.||+..|||-
T Consensus 159 ~~~~~~~~g~~~~~v~~~~~mg~~~~~~~~al~~~~~~~ 197 (215)
T 1tte_A 159 NVEESDLYGIDHDLIDEFESQGFEKDKIVEVLRRLGVKS 197 (215)
T ss_dssp CCSCSSCCCCSHHHHHHHHHHTCCHHHHHHHHHHSCCSS
T ss_pred chhhhhhccccHHHHHHHHHcCCCHHHHHHHHHHcCCCc
Confidence 1 26799999999999999999999999986
No 5
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=1e-50 Score=315.62 Aligned_cols=155 Identities=83% Similarity=1.315 Sum_probs=147.1
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW 80 (199)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 80 (199)
|++.+.+||++|+++|+++...++.|+.+.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||
T Consensus 5 Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 84 (159)
T 2bep_A 5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 84 (159)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred chHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCC
Confidence 78889999999999998842224679999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q psy17487 81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGG 155 (199)
Q Consensus 81 HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~ 155 (199)
||||+..+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||.+
T Consensus 85 HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~ 159 (159)
T 2bep_A 85 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 159 (159)
T ss_dssp BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred ccCCCCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhhcC
Confidence 999996689999999999999999999999999999999999999999999999999999999999999999974
No 6
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-50 Score=313.88 Aligned_cols=152 Identities=46% Similarity=0.756 Sum_probs=144.6
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW 80 (199)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 80 (199)
||..+.+||++|+++|+++ ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus 2 ~s~~~~~RL~kEl~~l~~~---~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 78 (154)
T 2c2v_B 2 GSAGLPRRIIKETQRLLAE---PVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIY 78 (154)
T ss_dssp CSCSCCHHHHHHHHHHHHS---CCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCC
T ss_pred ccHHHHHHHHHHHHHHHhC---CCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcc
Confidence 6777899999999999986 6789999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCC
Q psy17487 81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGP 156 (199)
Q Consensus 81 HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~ 156 (199)
||||+ .+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||..+
T Consensus 79 HPnv~-~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a~~~ 153 (154)
T 2c2v_B 79 HPNVD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNN 153 (154)
T ss_dssp CTTBC-TTCBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred cCcCc-cCCeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCCC
Confidence 99999 4899999999999999999999999999999999999999999999999999999999999999999875
No 7
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=6.5e-50 Score=308.58 Aligned_cols=150 Identities=43% Similarity=0.847 Sum_probs=144.7
Q ss_pred chHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccccc
Q psy17487 2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWH 81 (199)
Q Consensus 2 s~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 81 (199)
++.|.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus 2 a~~a~~RL~kEl~~l~~~---~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 78 (151)
T 4gpr_A 2 AAMAMRRIQKELREIQQD---PPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYH 78 (151)
T ss_dssp CHHHHHHHHHHHHHHHHS---CCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred chHHHHHHHHHHHHHHhC---CCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCccc
Confidence 467899999999999986 67899999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q psy17487 82 PNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGG 155 (199)
Q Consensus 82 PnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~ 155 (199)
|||+. +|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||.+
T Consensus 79 Pnv~~-~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~p 151 (151)
T 4gpr_A 79 PNINK-NGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYARP 151 (151)
T ss_dssp TTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCCC
T ss_pred ceECC-CCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 99995 99999999999999999999999999999999999999999999999999999999999999999974
No 8
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=2e-50 Score=316.55 Aligned_cols=154 Identities=31% Similarity=0.608 Sum_probs=147.4
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW 80 (199)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 80 (199)
||+.+.+||++|+++|+++ ++.|+.+.+.++|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|+||
T Consensus 1 Ms~~a~~RL~kEl~~l~~~---~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~ 77 (169)
T 1ayz_A 1 MSTPARRRLMRDFKRMKED---APPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMF 77 (169)
T ss_dssp -CCHHHHHHHHHHHHHHHS---CCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred CChHHHHHHHHHHHHHHhC---CCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCc
Confidence 8888999999999999986 5789999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCC
Q psy17487 81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSK 158 (199)
Q Consensus 81 HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~~~ 158 (199)
||||+. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||.....
T Consensus 78 HPNI~~-~G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a~~~~~ 154 (169)
T 1ayz_A 78 HPNVYA-NGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWEDDMD 154 (169)
T ss_dssp CTTBCT-TSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCCC-CCeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHcCCCcc
Confidence 999995 99999999999999999999999999999999999999999999999999999999999999999987554
No 9
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=1.1e-49 Score=307.62 Aligned_cols=151 Identities=32% Similarity=0.651 Sum_probs=145.5
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW 80 (199)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 80 (199)
||+.+.+||++|+++|+++ ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus 1 Ms~~a~~RL~~E~~~l~~~---~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 77 (152)
T 2aak_A 1 MSTPARKRLMRDFKRLQQD---PPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMF 77 (152)
T ss_dssp CCCHHHHHHHHHHHHHHHS---CCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred CChHHHHHHHHHHHHHHhC---CCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcc
Confidence 8888999999999999986 5679999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q psy17487 81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGG 155 (199)
Q Consensus 81 HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~ 155 (199)
||||+. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||..
T Consensus 78 HPnv~~-~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~ 151 (152)
T 2aak_A 78 HPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTA 151 (152)
T ss_dssp CTTBCT-TSBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC-
T ss_pred cCCCCC-CCEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence 999995 99999999999999999999999999999999999999999999999999999999999999999863
No 10
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=7.4e-50 Score=310.40 Aligned_cols=149 Identities=30% Similarity=0.588 Sum_probs=144.3
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW 80 (199)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 80 (199)
||..+.+||++|+++|+++ ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus 10 ~s~~~~~RL~kEl~~l~~~---~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 86 (158)
T 1zdn_A 10 LPPHIIRLVYKEVTTLTAD---PPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIF 86 (158)
T ss_dssp SCHHHHHHHHHHHHHHHHS---CCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred cCHHHHHHHHHHHHHHHhC---CCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcc
Confidence 6788999999999999986 5789999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhc
Q psy17487 81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153 (199)
Q Consensus 81 HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a 153 (199)
||||+. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||
T Consensus 87 HPnv~~-~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A 158 (158)
T 1zdn_A 87 HPNVGA-NGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG 158 (158)
T ss_dssp CTTBCT-TSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred cCCCCC-CCEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999995 899999999999999999999999999999999999999999999999999999999999999997
No 11
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.9e-49 Score=311.18 Aligned_cols=163 Identities=39% Similarity=0.692 Sum_probs=145.4
Q ss_pred chHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccccc
Q psy17487 2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWH 81 (199)
Q Consensus 2 s~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 81 (199)
|..+.+||++|+++|+++ ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus 2 s~~~~~RL~kEl~~l~~~---~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 78 (169)
T 1yh2_A 2 SMQRASRLKRELHMLATE---PPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYH 78 (169)
T ss_dssp CHHHHHHHHHHHHHHHHS---CCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred chHHHHHHHHHHHHHHhC---CCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCcc
Confidence 457899999999999986 67899999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCeeeccCch----hhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCCC
Q psy17487 82 PNISSVTGAICLDILK----DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPS 157 (199)
Q Consensus 82 PnV~~~~G~icl~~l~----~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~~ 157 (199)
|||+ .+|.||+++|. ++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||....
T Consensus 79 PNv~-~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~~~ 157 (169)
T 1yh2_A 79 PNID-SAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQ 157 (169)
T ss_dssp TTBC-TTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCCC-
T ss_pred ccCC-cCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHccccc
Confidence 9999 59999999997 899999999999999999999999999999999999999999999999999999998754
Q ss_pred CCcchHHHHHHH
Q psy17487 158 KNPDFDSKIQRL 169 (199)
Q Consensus 158 ~~~~~~~~~~~~ 169 (199)
. ..++.+++++
T Consensus 158 ~-~~~~~~~~~~ 168 (169)
T 1yh2_A 158 K-ADEEEMLDNL 168 (169)
T ss_dssp ------------
T ss_pred c-CCHHHHhhcC
Confidence 3 4455555554
No 12
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=5.7e-49 Score=307.50 Aligned_cols=148 Identities=45% Similarity=0.816 Sum_probs=142.6
Q ss_pred chHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccccc
Q psy17487 2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWH 81 (199)
Q Consensus 2 s~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 81 (199)
++.+.+||++|+++|+++ ++.|+.+.+.++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus 19 ~~~~~~RL~kEl~~l~~~---~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H 95 (166)
T 2ayv_A 19 FQGALKRINKELNDLSKD---PPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYH 95 (166)
T ss_dssp CTTHHHHHHHHHHHHHHS---CCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCB
T ss_pred CcHHHHHHHHHHHHHHhC---CCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcC
Confidence 356889999999999986 67899999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhc
Q psy17487 82 PNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153 (199)
Q Consensus 82 PnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a 153 (199)
|||+. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||
T Consensus 96 PNI~~-~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A 166 (166)
T 2ayv_A 96 PNINS-QGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA 166 (166)
T ss_dssp TTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CcCCC-CCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 99994 999999999999999999999999999999999999999999999999999999999999999997
No 13
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=5.2e-49 Score=303.22 Aligned_cols=149 Identities=42% Similarity=0.829 Sum_probs=143.3
Q ss_pred chHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccccc
Q psy17487 2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWH 81 (199)
Q Consensus 2 s~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 81 (199)
|..+.+||++|+++|+++ ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus 2 s~~~~~RL~kEl~~l~~~---~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 78 (150)
T 1z2u_A 2 SHMALKRIQKELQDLGRD---PPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH 78 (150)
T ss_dssp CCHHHHHHHHHHHHHHHS---CCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred chHHHHHHHHHHHHHHhC---CCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCccc
Confidence 456899999999999986 67799999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcC
Q psy17487 82 PNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAG 154 (199)
Q Consensus 82 PnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~ 154 (199)
|||+. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus 79 Pnv~~-~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 150 (150)
T 1z2u_A 79 PNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 150 (150)
T ss_dssp TTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CcCCC-CCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99995 9999999999999999999999999999999999999999999999999999999999999999984
No 14
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=2e-49 Score=305.28 Aligned_cols=147 Identities=53% Similarity=0.964 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCcceEEEecCC-CcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCC
Q psy17487 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPN 83 (199)
Q Consensus 5 a~~RL~~E~~~l~~~~~~~~~~i~v~~~~d-n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 83 (199)
+.+||++|+++|+++ ++.|+.+.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus 2 ~~~RL~~El~~l~~~---~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 78 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDD---PAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPN 78 (149)
T ss_dssp CHHHHHHHHHHHHHC---GGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred hHHHHHHHHHHHHhC---CCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCC
Confidence 579999999999986 568999999887 9999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcC
Q psy17487 84 ISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAG 154 (199)
Q Consensus 84 V~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~ 154 (199)
|+..+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 79 i~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a~ 149 (149)
T 1fxt_A 79 ISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS 149 (149)
T ss_dssp BCSSSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHCC
T ss_pred CcCCCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 99559999999999999999999999999999999999999999999999999999999999999999985
No 15
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=5.5e-49 Score=307.51 Aligned_cols=150 Identities=27% Similarity=0.552 Sum_probs=143.0
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCcceEEEecC-CCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccc
Q psy17487 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELID-DNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKI 79 (199)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~-dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 79 (199)
|++.|.+||++|+++|+++ ++.|+.+.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus 1 M~~~a~~RL~kEl~~l~~~---~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i 77 (165)
T 2ucz_A 1 MSKTAQKRLLKELQQLIKD---SPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSI 77 (165)
T ss_dssp -CHHHHHHHHHHHHHHHHS---CCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred CChHHHHHHHHHHHHHHhC---CCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCC
Confidence 8999999999999999886 67899999876 6999999999999999999999999999999999999999999999
Q ss_pred ccCCccCCCCeeeccCc-------------hhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHH
Q psy17487 80 WHPNISSVTGAICLDIL-------------KDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTAR 146 (199)
Q Consensus 80 ~HPnV~~~~G~icl~~l-------------~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak 146 (199)
|||||+. +|.||+++| .++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||
T Consensus 78 ~HPNv~~-~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~ 156 (165)
T 2ucz_A 78 LHPNIYP-NGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVK 156 (165)
T ss_dssp SCTTBCT-TSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHH
T ss_pred ccCCCCC-CCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHH
Confidence 9999995 999999999 68999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC
Q psy17487 147 HWTNVYAG 154 (199)
Q Consensus 147 ~~~~~~a~ 154 (199)
+|+++++.
T Consensus 157 ~~~~~~~~ 164 (165)
T 2ucz_A 157 LSILKSLG 164 (165)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhh
Confidence 99999864
No 16
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=1.4e-48 Score=305.04 Aligned_cols=148 Identities=42% Similarity=0.822 Sum_probs=143.0
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccC
Q psy17487 3 NIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHP 82 (199)
Q Consensus 3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 82 (199)
+.+.+||++|+++|+++ ++.|+.+.+.++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||
T Consensus 18 ~~~~~RL~kEl~~l~~~---~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HP 94 (165)
T 2c4o_A 18 SMALKRIHKELNDLARD---PPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHP 94 (165)
T ss_dssp HHHHHHHHHHHHHHHSS---CCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBT
T ss_pred cHHHHHHHHHHHHHHhC---CCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCC
Confidence 56899999999999885 678999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcC
Q psy17487 83 NISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAG 154 (199)
Q Consensus 83 nV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~ 154 (199)
||+. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus 95 nV~~-~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a~ 165 (165)
T 2c4o_A 95 NINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 165 (165)
T ss_dssp TBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred cCCC-CCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9995 9999999999999999999999999999999999999999999999999999999999999999984
No 17
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=6.2e-49 Score=304.62 Aligned_cols=150 Identities=32% Similarity=0.597 Sum_probs=143.4
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW 80 (199)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 80 (199)
|++.+.+||++|+++|+++ ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus 6 ~~~~~~~RL~kEl~~l~~~---~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 82 (156)
T 2e2c_A 6 ERHSVSKRLQQELRTLLMS---GDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCW 82 (156)
T ss_dssp SCCCHHHHHHHHHHHHHHH---CCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred cchHHHHHHHHHHHHHHhC---CCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcc
Confidence 4567899999999999986 5679999999899999999999999999999999999999999999999999999999
Q ss_pred cCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q psy17487 81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGG 155 (199)
Q Consensus 81 HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~ 155 (199)
||||+. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++| +|+++|.++||+|+++|+.+
T Consensus 83 HPnv~~-~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~~~ 155 (156)
T 2e2c_A 83 HPNVDQ-SGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQSD 155 (156)
T ss_dssp BTTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHHHC
T ss_pred cCCCcc-CceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhccC
Confidence 999995 99999999999999999999999999999999999999999999999 89999999999999999865
No 18
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=5.1e-49 Score=302.97 Aligned_cols=147 Identities=46% Similarity=0.861 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCCc
Q psy17487 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNI 84 (199)
Q Consensus 5 a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 84 (199)
+.+||++|+++|+++ ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus 2 ~~~RL~kEl~~l~~~---~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 78 (149)
T 2r0j_A 2 IPRRITKETQNLANE---PPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNI 78 (149)
T ss_dssp CCHHHHHHHHHHHHS---CCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred HHHHHHHHHHHHHhC---CCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCC
Confidence 368999999999986 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q psy17487 85 SSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGG 155 (199)
Q Consensus 85 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~ 155 (199)
+. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||.+
T Consensus 79 ~~-~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 148 (149)
T 2r0j_A 79 DK-LGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYANN 148 (149)
T ss_dssp CT-TCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred CC-CCEEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence 95 89999999999999999999999999999999999999999999999999999999999999999975
No 19
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=2.2e-48 Score=303.82 Aligned_cols=149 Identities=28% Similarity=0.559 Sum_probs=142.4
Q ss_pred chHHHHHHHHHHHHHHhcCCCCCcceEEEecCC-CcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487 2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW 80 (199)
Q Consensus 2 s~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~d-n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 80 (199)
|+.|.+||++|+++|+++ ++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus 1 a~~a~~RL~kEl~~l~~~---~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 77 (164)
T 3h8k_A 1 AGTALKRLMAEYKQLTLN---PPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMF 77 (164)
T ss_dssp CCHHHHHHHHHHHHHHHS---CCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCC
T ss_pred CcHHHHHHHHHHHHHHhC---CCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCc
Confidence 457899999999999986 678999998876 9999999999999999999999999999999999999999999999
Q ss_pred cCCccCCCCeeeccCch-------------hhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHH
Q psy17487 81 HPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARH 147 (199)
Q Consensus 81 HPnV~~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~ 147 (199)
||||+ .+|.||+++|. ++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+
T Consensus 78 HPNV~-~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~ 156 (164)
T 3h8k_A 78 HPNIY-PDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 156 (164)
T ss_dssp CTTBC-TTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHH
T ss_pred cCCCC-CCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHH
Confidence 99999 59999999996 78999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC
Q psy17487 148 WTNVYAG 154 (199)
Q Consensus 148 ~~~~~a~ 154 (199)
|++++++
T Consensus 157 ~~~~s~~ 163 (164)
T 3h8k_A 157 IVQKSLG 163 (164)
T ss_dssp HHHHHHT
T ss_pred HHHHhhc
Confidence 9999875
No 20
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=1.6e-48 Score=302.58 Aligned_cols=150 Identities=27% Similarity=0.557 Sum_probs=141.3
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCcceEEEecC-----CCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccc
Q psy17487 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELID-----DNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKF 75 (199)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~-----dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f 75 (199)
||+.+.+||++|+++|+++ ++.|+.+.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|
T Consensus 1 Ms~~a~~RL~kE~~~l~~~---~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f 77 (157)
T 2gjd_A 1 MSSLCLQRLQEERKKWRKD---HPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKF 77 (157)
T ss_dssp --CHHHHHHHHHHHHHHHC---CCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEEC
T ss_pred CChHHHHHHHHHHHHHHhC---CCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeec
Confidence 8888999999999999986 57899998864 389999999999999999999999999999999999999999
Q ss_pred ccccccCCccCCCCeeeccCchh--hhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhc
Q psy17487 76 LTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153 (199)
Q Consensus 76 ~t~i~HPnV~~~~G~icl~~l~~--~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a 153 (199)
.|+||||||+ .+|.||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||
T Consensus 78 ~t~i~HPnv~-~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a 156 (157)
T 2gjd_A 78 PAGFYHPNVY-PSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYS 156 (157)
T ss_dssp CTTCCCTTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTB
T ss_pred cCCCccCCCC-CCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence 9999999999 599999999966 7999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q psy17487 154 G 154 (199)
Q Consensus 154 ~ 154 (199)
.
T Consensus 157 ~ 157 (157)
T 2gjd_A 157 K 157 (157)
T ss_dssp C
T ss_pred C
Confidence 4
No 21
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=4.4e-49 Score=305.18 Aligned_cols=149 Identities=43% Similarity=0.757 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCC
Q psy17487 4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPN 83 (199)
Q Consensus 4 ~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 83 (199)
.+.+||++|+++|+++ ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus 5 ~~~~RL~kE~~~l~~~---~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 81 (155)
T 1jat_A 5 SLPKRIIKETEKLVSD---PVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPN 81 (155)
T ss_dssp SCCHHHHHHHHHHHHS---CCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred HHHHHHHHHHHHHHhC---CCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCC
Confidence 4679999999999986 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCC
Q psy17487 84 ISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGP 156 (199)
Q Consensus 84 V~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~ 156 (199)
|+ .+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||.++
T Consensus 82 v~-~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a~~~ 153 (155)
T 1jat_A 82 ID-RLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKKK 153 (155)
T ss_dssp BC-TTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSEEC
T ss_pred CC-CCCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcccC
Confidence 99 6999999999999999999999999999999999999999999999999999999999999999999764
No 22
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=2.2e-48 Score=310.55 Aligned_cols=151 Identities=48% Similarity=0.884 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHHHhcCCC----------CCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcc
Q psy17487 4 IAAQRIKREFKEVIKSEEV----------AKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKV 73 (199)
Q Consensus 4 ~a~~RL~~E~~~l~~~~~~----------~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v 73 (199)
.+.+||++||++|+++... ...|+.+.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|
T Consensus 32 ~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V 111 (193)
T 2f4z_A 32 REQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKM 111 (193)
T ss_dssp CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEE
T ss_pred HHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeE
Confidence 4789999999999986320 127999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhc
Q psy17487 74 KFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153 (199)
Q Consensus 74 ~f~t~i~HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a 153 (199)
+|.|+||||||+..+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||
T Consensus 112 ~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~t~~ya 191 (193)
T 2f4z_A 112 KFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFA 191 (193)
T ss_dssp EESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred EEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHc
Confidence 99999999999966899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q psy17487 154 G 154 (199)
Q Consensus 154 ~ 154 (199)
+
T Consensus 192 ~ 192 (193)
T 2f4z_A 192 K 192 (193)
T ss_dssp C
T ss_pred c
Confidence 5
No 23
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=3.4e-48 Score=302.27 Aligned_cols=149 Identities=26% Similarity=0.531 Sum_probs=141.2
Q ss_pred chHHHHHHHHHHHHHHhcCCCCCcceEEEecCC-----CcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccc
Q psy17487 2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDD-----NYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFL 76 (199)
Q Consensus 2 s~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~d-----n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~ 76 (199)
|..|.+||++|+++|+++ ++.|+.+.+.++ |+++|+++|.||++|||+||+|++.|.||++||++||+|+|.
T Consensus 8 ~~~~~~RL~kEl~~l~~~---~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~ 84 (163)
T 3rcz_B 8 SSLCKTRLQEERKQWRRD---HPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFT 84 (163)
T ss_dssp -CHHHHHHHHHHHHHHHS---CCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred cHHHHHHHHHHHHHHHhC---CCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEe
Confidence 457899999999999986 678999998766 999999999999999999999999999999999999999999
Q ss_pred cccccCCccCCCCeeeccCchh--hhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcC
Q psy17487 77 TKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAG 154 (199)
Q Consensus 77 t~i~HPnV~~~~G~icl~~l~~--~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~ 154 (199)
|+||||||+ .+|.||+++|.. +|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus 85 t~i~HPnV~-~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~~ya~ 163 (163)
T 3rcz_B 85 PPLFHPNVY-PSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENAP 163 (163)
T ss_dssp SCCCSTTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred CCCccCCCC-CCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhCc
Confidence 999999999 599999999954 59999999999999999999999999999999999999999999999999999984
No 24
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=4.5e-48 Score=301.19 Aligned_cols=151 Identities=30% Similarity=0.525 Sum_probs=142.6
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCcceEEEecC-----CCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccc
Q psy17487 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELID-----DNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKF 75 (199)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~-----dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f 75 (199)
|++.+.+||++|+++|+++ ++.|+.+.+.. +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|
T Consensus 4 M~~~a~~RL~kE~~~l~~~---~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f 80 (161)
T 2grr_A 4 MSGIALSRLAQERKAWRKD---HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKF 80 (161)
T ss_dssp CCHHHHHHHHHHHHHHHHS---CCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEE
T ss_pred ccHHHHHHHHHHHHHHHhC---CCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEE
Confidence 8888999999999999986 56789888763 589999999999999999999999999999999999999999
Q ss_pred ccccccCCccCCCCeeeccCchh--hhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhc
Q psy17487 76 LTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153 (199)
Q Consensus 76 ~t~i~HPnV~~~~G~icl~~l~~--~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a 153 (199)
.|+||||||+ .+|.||+++|.. +|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||
T Consensus 81 ~t~i~HPnv~-~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a 159 (161)
T 2grr_A 81 EPPLFHPNVY-PSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159 (161)
T ss_dssp SSCCCSTTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTC
T ss_pred ecCcccCCCC-CCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHh
Confidence 9999999999 599999999965 8999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q psy17487 154 GG 155 (199)
Q Consensus 154 ~~ 155 (199)
..
T Consensus 160 ~~ 161 (161)
T 2grr_A 160 PS 161 (161)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 25
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=1.9e-47 Score=305.43 Aligned_cols=148 Identities=42% Similarity=0.735 Sum_probs=142.7
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccC
Q psy17487 3 NIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHP 82 (199)
Q Consensus 3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 82 (199)
+.+.+||++||++|+++ ++.|+.+.+.++|+++|+++|.||++|||+||+|+|.|.||++||++||+|+|.|+||||
T Consensus 47 s~a~~RL~kEl~~l~~~---~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HP 123 (194)
T 3bzh_A 47 STSAKRIQKELADITLD---PPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHC 123 (194)
T ss_dssp HHHHHHHHHHHHHHHHS---CCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBT
T ss_pred cHHHHHHHHHHHHHHhC---CCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccc
Confidence 45789999999999985 578999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcC
Q psy17487 83 NISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAG 154 (199)
Q Consensus 83 nV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~ 154 (199)
||+. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus 124 NV~~-~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya~ 194 (194)
T 3bzh_A 124 NINS-QGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 194 (194)
T ss_dssp TBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred eECC-CCceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 9995 9999999999999999999999999999999999999999999999999999999999999999984
No 26
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=7.1e-48 Score=304.38 Aligned_cols=151 Identities=32% Similarity=0.548 Sum_probs=141.7
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW 80 (199)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 80 (199)
|++.+.+||++||++|+++ ++.|+.+.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||
T Consensus 27 ~~~~~~~RL~kEl~~l~~~---~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~ 103 (179)
T 1i7k_A 27 ARGPVGKRLQQELMTLMMS---GDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCY 103 (179)
T ss_dssp ---CHHHHHHHHHHHHHHH---CCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred cChHHHHHHHHHHHHHHhC---CCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCc
Confidence 5677899999999999986 5789999999899999999999999999999999999999999999999999999999
Q ss_pred cCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCC
Q psy17487 81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGP 156 (199)
Q Consensus 81 HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~ 156 (199)
||||+. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++| +|+++|.++|++|+++++.++
T Consensus 104 HPNV~~-~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~~~~ 177 (179)
T 1i7k_A 104 HPNVDT-QGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTSQ 177 (179)
T ss_dssp STTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC--
T ss_pred cCcccc-CCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHhccc
Confidence 999995 99999999999999999999999999999999999999999999999 999999999999999998764
No 27
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.7e-47 Score=298.74 Aligned_cols=147 Identities=26% Similarity=0.489 Sum_probs=139.3
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW 80 (199)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 80 (199)
|++.+.+||++|+++|+++ ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus 20 M~~~a~~RL~kEl~~l~~~---~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~ 96 (169)
T 1yrv_A 20 MHGRAYLLLHRDFCDLKEN---NYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPF 96 (169)
T ss_dssp GGCHHHHHHHHHHHHHHHH---CCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCC
T ss_pred cChHHHHHHHHHHHHHHhC---CCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCc
Confidence 7788999999999999986 5779999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCCCeeeccCch--hhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHH
Q psy17487 81 HPNISSVTGAICLDILK--DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNV 151 (199)
Q Consensus 81 HPnV~~~~G~icl~~l~--~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~ 151 (199)
||||+..+|.||+++|. ++|+|+++|++||.+|++||.+|++++|+|.+||++|++|+++|.++ ++++++
T Consensus 97 HPNI~~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~~ 168 (169)
T 1yrv_A 97 HPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFNR 168 (169)
T ss_dssp CTTBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC-
T ss_pred cCcccCCCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhhC
Confidence 99994469999999997 89999999999999999999999999999999999999999999998 887753
No 28
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=7.2e-47 Score=297.25 Aligned_cols=154 Identities=29% Similarity=0.525 Sum_probs=140.7
Q ss_pred CchHHHHHHHHHHHHHHhcC-CC-----CCc--ceEEEe-cCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCC
Q psy17487 1 MANIAAQRIKREFKEVIKSE-EV-----AKC--AIKLEL-IDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPP 71 (199)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~-~~-----~~~--~i~v~~-~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP 71 (199)
|++.+.+||++|+++|+++. .. +.. ++.+.+ .++|+++|+++|.||++|||+||.|+++|.||++||++||
T Consensus 3 Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP 82 (172)
T 2y9m_A 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPP 82 (172)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred CcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCC
Confidence 88889999999999998832 11 222 466677 6779999999999999999999999999999999999999
Q ss_pred cccccc-ccccCCccCCCCeeeccCch-hhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhh-CHHHHHHHHHHH
Q psy17487 72 KVKFLT-KIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKE-NPEMFTLTARHW 148 (199)
Q Consensus 72 ~v~f~t-~i~HPnV~~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~-d~~~f~~~ak~~ 148 (199)
+|+|.| +||||||+..+|.||+++|. ++|+|+++|.+||.+|++||.+|++++|+|.+||++|++ |+++|.++||+|
T Consensus 83 ~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~~~ 162 (172)
T 2y9m_A 83 KISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYF 162 (172)
T ss_dssp EEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHHHH
T ss_pred EEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999 99999997569999999997 899999999999999999999999999999999999999 999999999999
Q ss_pred HHHhcC
Q psy17487 149 TNVYAG 154 (199)
Q Consensus 149 ~~~~a~ 154 (199)
+++++.
T Consensus 163 ~~~~~~ 168 (172)
T 2y9m_A 163 LAERER 168 (172)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 999864
No 29
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=4.1e-47 Score=294.09 Aligned_cols=148 Identities=30% Similarity=0.545 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcceEE-EecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccC
Q psy17487 4 IAAQRIKREFKEVIKSEEVAKCAIKL-ELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHP 82 (199)
Q Consensus 4 ~a~~RL~~E~~~l~~~~~~~~~~i~v-~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 82 (199)
.+.+||++|+++|+++ ++.|+.+ .+.++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus 4 ~~~~RL~kEl~~l~~~---~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 79 (155)
T 1wzv_A 4 MASMRVVKELEDLQKK---PPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHP 79 (155)
T ss_dssp -CHHHHHHHHHHHHHS---CCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred hHHHHHHHHHHHHHhC---CCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccC
Confidence 4689999999999986 5679998 778889999999999 9999999999999999999999999999999999999
Q ss_pred CccCCCCeeeccCc-hhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCC
Q psy17487 83 NISSVTGAICLDIL-KDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGP 156 (199)
Q Consensus 83 nV~~~~G~icl~~l-~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~ 156 (199)
||+. +|.||+++| .++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||..+
T Consensus 80 nV~~-~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~~ 153 (155)
T 1wzv_A 80 NVDE-NGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVDR 153 (155)
T ss_dssp TBCT-TCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCEEC
T ss_pred cCCC-CCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 9995 999999999 899999999999999999999999999999999999999999999999999999999754
No 30
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=1.7e-47 Score=295.31 Aligned_cols=147 Identities=26% Similarity=0.613 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCC
Q psy17487 4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPN 83 (199)
Q Consensus 4 ~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 83 (199)
.|.+||++|+++|++. |+.+.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||||
T Consensus 2 sa~~Rl~kEl~~l~~~------~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 75 (152)
T 2onu_A 2 TSLTRKQCDFTKLIMA------GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPN 75 (152)
T ss_dssp -CCCHHHHTHHHHHHH------TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred hHHHHHHHHHHhcCcC------CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCc
Confidence 3679999999999773 6778888899999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeeeccCchhhhhhcccHHHHHHH-HHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCC
Q psy17487 84 ISSVTGAICLDILKDQWAAAMTLRTVLLS-LQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGP 156 (199)
Q Consensus 84 V~~~~G~icl~~l~~~W~p~~~i~~il~~-i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~ 156 (199)
|+..+|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|+++||...
T Consensus 76 i~~~~G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a~~~ 149 (152)
T 2onu_A 76 VDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYASKD 149 (152)
T ss_dssp BCTTTCBBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHSCGG
T ss_pred CcCcCCeEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccCc
Confidence 99658999999999999999999999999 68999999999999999999999999999999999999999763
No 31
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-46 Score=297.03 Aligned_cols=145 Identities=30% Similarity=0.667 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCC
Q psy17487 4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPN 83 (199)
Q Consensus 4 ~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 83 (199)
.+.+||++|+++|++ .|+.+.+. +|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||||
T Consensus 25 ~a~~RL~kEl~~l~~------~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPN 97 (179)
T 2z5d_A 25 PGKRRMDTDVIKLIE------SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPN 97 (179)
T ss_dssp HHHHHHHHHHHHHHH------SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTT
T ss_pred HHHHHHHHHHHhcCc------CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCc
Confidence 478999999999975 35677776 57899999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeeeccCchhhhhhcccHHHHHHH-HHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q psy17487 84 ISSVTGAICLDILKDQWAAAMTLRTVLLS-LQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGG 155 (199)
Q Consensus 84 V~~~~G~icl~~l~~~W~p~~~i~~il~~-i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~ 155 (199)
|+..+|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|+++||..
T Consensus 98 V~~~~G~ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~~ 170 (179)
T 2z5d_A 98 IDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATE 170 (179)
T ss_dssp BCTTTCBBCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSSH
T ss_pred CCCCCCeEeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence 99559999999999999999999999999 9999999999999999999999999999999999999999975
No 32
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=4.2e-46 Score=291.73 Aligned_cols=147 Identities=33% Similarity=0.618 Sum_probs=138.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCcceEEEec-CCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccccc
Q psy17487 3 NIAAQRIKREFKEVIKSEEVAKCAIKLELI-DDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWH 81 (199)
Q Consensus 3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~-~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 81 (199)
+.+.+||++|+++|+++ ++.|+++.+. ++|++.|+++| ||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus 13 s~~~~RL~kEl~~l~~~---~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 88 (167)
T 3fn1_B 13 SVRDKLLVKEVAELEAN---LPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWH 88 (167)
T ss_dssp CHHHHHHHHHHHHHGGG---SCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCC
T ss_pred hHHHHHHHHHHHHHHhC---CCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCccc
Confidence 46889999999999886 6779999865 56899999998 8999999999999999999999999999999999999
Q ss_pred CCccCCCCeeeccCchh------hhhhcccHHHHHHHHHHHHhc-CCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcC
Q psy17487 82 PNISSVTGAICLDILKD------QWAAAMTLRTVLLSLQALMAA-AEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAG 154 (199)
Q Consensus 82 PnV~~~~G~icl~~l~~------~W~p~~~i~~il~~i~~ll~~-p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~ 154 (199)
|||+ .+|.||+++|.. +|+|+++|.+||.+|++||.+ ||+++|+|.+||++|++|+++|.++||+|+++||.
T Consensus 89 Pnv~-~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~A~ 167 (167)
T 3fn1_B 89 PNIT-ETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR 167 (167)
T ss_dssp SSBC-TTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCCC-CCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 9999 599999999964 799999999999999999999 69999999999999999999999999999999984
No 33
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=9.1e-46 Score=293.64 Aligned_cols=148 Identities=29% Similarity=0.570 Sum_probs=138.8
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCcceEEE-ecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccccc
Q psy17487 3 NIAAQRIKREFKEVIKSEEVAKCAIKLE-LIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWH 81 (199)
Q Consensus 3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~-~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 81 (199)
+.+.+||++||++|+++ ++.|+++. +.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus 6 ~~a~kRL~kEl~~l~~~---~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 82 (183)
T 3rz3_A 6 PSSQKALLLELKGLQEE---PVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWH 82 (183)
T ss_dssp CHHHHHHHHHHHHHHHS---CCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCC
T ss_pred hHHHHHHHHHHHHHHhC---CCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCcc
Confidence 56899999999999986 57799998 566799999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCeeeccCch-------------hhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhh------CHHHHH
Q psy17487 82 PNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKE------NPEMFT 142 (199)
Q Consensus 82 PnV~~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~------d~~~f~ 142 (199)
|||+. +|.||+++|. ++|+|+++|++||.+|++||.+||+++|+|.+||++|++ |+++|.
T Consensus 83 PnV~~-~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~ 161 (183)
T 3rz3_A 83 PNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYT 161 (183)
T ss_dssp TTBCT-TSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHH
T ss_pred CCCCC-CCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHH
Confidence 99995 9999999995 789999999999999999999999999999999999998 789999
Q ss_pred HHHHHHHHHhcC
Q psy17487 143 LTARHWTNVYAG 154 (199)
Q Consensus 143 ~~ak~~~~~~a~ 154 (199)
++||++++++..
T Consensus 162 ~~v~~~v~~s~~ 173 (183)
T 3rz3_A 162 DIIRKQVLGTKV 173 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988643
No 34
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=6.3e-46 Score=291.82 Aligned_cols=142 Identities=32% Similarity=0.684 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCcceEEEecC-CCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccccc
Q psy17487 3 NIAAQRIKREFKEVIKSEEVAKCAIKLELID-DNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWH 81 (199)
Q Consensus 3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~-dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 81 (199)
+.+.+||++||++|+++ ++.|+.+.+.+ +|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus 16 ~~~~~rL~kEl~~l~~~---~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~H 92 (172)
T 2awf_A 16 PRGSLLLRRQLAELNKN---PVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWH 92 (172)
T ss_dssp CTTHHHHHHHHHHHHHS---CCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCC
T ss_pred HHHHHHHHHHHHHHHhC---CCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCcc
Confidence 56799999999999986 67899999876 699999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCeeeccCch-------------hhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHH-HHHHHHHH
Q psy17487 82 PNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPE-MFTLTARH 147 (199)
Q Consensus 82 PnV~~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~-~f~~~ak~ 147 (199)
|||+. +|.||+++|. ++|+|+++|++||.+|++||.+|++++|+|.+||++|++|++ +|.++||+
T Consensus 93 PNV~~-~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~ 171 (172)
T 2awf_A 93 PNVDK-NGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVAR 171 (172)
T ss_dssp TTBCT-TCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC----------------------------
T ss_pred CCCCC-CCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHHh
Confidence 99995 8999999995 689999999999999999999999999999999999999999 99999997
Q ss_pred H
Q psy17487 148 W 148 (199)
Q Consensus 148 ~ 148 (199)
|
T Consensus 172 ~ 172 (172)
T 2awf_A 172 C 172 (172)
T ss_dssp -
T ss_pred C
Confidence 5
No 35
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-45 Score=289.60 Aligned_cols=145 Identities=26% Similarity=0.551 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCC
Q psy17487 4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPN 83 (199)
Q Consensus 4 ~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 83 (199)
.+.+||++|+++|+++ + .++ +.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||||
T Consensus 12 ~~~~RL~~El~~l~~~---~-~~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPN 84 (171)
T 1yf9_A 12 RSNRRREMDYMRLCNS---T-RKV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPN 84 (171)
T ss_dssp -CCHHHHHHHHHHHSS---S-SCE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTT
T ss_pred cHHHHHHHHHHHHHhC---C-CCC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCccccc
Confidence 4679999999999885 2 343 34789999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeeeccCchhhhhhcccHHHHHHHH-HHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q psy17487 84 ISSVTGAICLDILKDQWAAAMTLRTVLLSL-QALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGG 155 (199)
Q Consensus 84 V~~~~G~icl~~l~~~W~p~~~i~~il~~i-~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~ 155 (199)
|+..+|.||+++|.++|+|+++|.+||.+| ++||.+|++++|+|.+||++|++|+++|.++||+|+++||..
T Consensus 85 i~~~~G~iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a~~ 157 (171)
T 1yf9_A 85 VDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHATP 157 (171)
T ss_dssp BCTTTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCCH
T ss_pred CcccCCeEeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcCh
Confidence 995599999999999999999999999997 799999999999999999999999999999999999999975
No 36
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=4.2e-46 Score=288.16 Aligned_cols=147 Identities=33% Similarity=0.659 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCcceEEEe-cCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCC
Q psy17487 5 AAQRIKREFKEVIKSEEVAKCAIKLEL-IDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPN 83 (199)
Q Consensus 5 a~~RL~~E~~~l~~~~~~~~~~i~v~~-~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 83 (199)
|.+||++|+++|+++ ++.|+.+.+ .++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus 3 a~~RL~kEl~~l~~~---~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 78 (154)
T 1c4z_D 3 ASRRLMKELEEIRKC---GMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPN 78 (154)
T ss_dssp -CTTHHHHHTTCSSS---CCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred HHHHHHHHHHHHHhC---CCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCcccc
Confidence 679999999999875 557887554 5679999999998 99999999999999999999999999999999999999
Q ss_pred ccCCCCeeeccCch-hhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCC
Q psy17487 84 ISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGP 156 (199)
Q Consensus 84 V~~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~ 156 (199)
|+. +|.||+++|. ++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||..+
T Consensus 79 v~~-~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~~ 151 (154)
T 1c4z_D 79 IDE-KGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKR 151 (154)
T ss_dssp BCT-TCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC----
T ss_pred CCC-CCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhcccC
Confidence 995 9999999995 89999999999999999999999999999999999999999999999999999999864
No 37
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=6.4e-45 Score=283.07 Aligned_cols=142 Identities=30% Similarity=0.577 Sum_probs=134.2
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCcceEEE-ecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccccc
Q psy17487 3 NIAAQRIKREFKEVIKSEEVAKCAIKLE-LIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWH 81 (199)
Q Consensus 3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~-~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 81 (199)
+.+.+||++|+++| + ++.|+.+. +.++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus 5 ~~~~~RL~kEl~~l-~----~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 78 (160)
T 1y8x_A 5 SAAQLRIQKDINEL-N----LPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYH 78 (160)
T ss_dssp CHHHHHHHHHHHTC-C----CCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCB
T ss_pred cHHHHHHHHHHHhc-C----CCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCcc
Confidence 45899999999999 2 45789988 6778999999988 9999999999999999999999999999999999999
Q ss_pred CCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHH
Q psy17487 82 PNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNV 151 (199)
Q Consensus 82 PnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~ 151 (199)
|||+. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|++.
T Consensus 79 Pnv~~-~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~ 147 (160)
T 1y8x_A 79 PNIDL-EGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG 147 (160)
T ss_dssp TTBCT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHS
T ss_pred CcCCC-CCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence 99995 8999999999999999999999999999999999999999999999999999999999999864
No 38
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=2.3e-44 Score=315.96 Aligned_cols=152 Identities=41% Similarity=0.788 Sum_probs=146.8
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccC
Q psy17487 3 NIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHP 82 (199)
Q Consensus 3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 82 (199)
+.|.+||++|+++|+++ ++.|+++.|.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||
T Consensus 2 s~a~~RL~kEl~~l~~~---~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 78 (399)
T 4ddg_A 2 AMALKRIHKELNDLARD---PPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHP 78 (399)
T ss_dssp HHHHHHHHHHHHHHHHS---CCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCT
T ss_pred cHHHHHHHHHHHHHHhC---CCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeecccccc
Confidence 57899999999999986 678999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCC
Q psy17487 83 NISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSK 158 (199)
Q Consensus 83 nV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~~~ 158 (199)
||+. +|.||+++|.++|+|+++|.+||.+|++||.+||+++|+|.+||++|++|+++|.++||+|+++||.+...
T Consensus 79 nv~~-~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~~~v~ 153 (399)
T 4ddg_A 79 NINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMGGSA 153 (399)
T ss_dssp TBCT-TCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTSCTTH
T ss_pred ccCC-CCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhccccc
Confidence 9995 99999999999999999999999999999999999999999999999999999999999999999998765
No 39
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.6e-44 Score=285.56 Aligned_cols=143 Identities=29% Similarity=0.554 Sum_probs=135.1
Q ss_pred chHHHHHHHHHHHHHHhcCCCCCcceEEE-ecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487 2 ANIAAQRIKREFKEVIKSEEVAKCAIKLE-LIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW 80 (199)
Q Consensus 2 s~~a~~RL~~E~~~l~~~~~~~~~~i~v~-~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 80 (199)
++.+.+||++|+++| + ++.|+.+. +.++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus 24 ~~~~~~RL~kEl~~l--~---~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~ 97 (180)
T 2nvu_C 24 ASAAQLRIQKDINEL--N---LPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVY 97 (180)
T ss_dssp CCHHHHHHHHHHHTC--C---CCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCC
T ss_pred ccHHHHHHHHHHHhc--C---CCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCc
Confidence 356899999999999 2 45789988 7788999999998 999999999999999999999999999999999999
Q ss_pred cCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHH
Q psy17487 81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNV 151 (199)
Q Consensus 81 HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~ 151 (199)
||||+. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|++.
T Consensus 98 HPNV~~-~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~ 167 (180)
T 2nvu_C 98 HPNIDL-EGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG 167 (180)
T ss_dssp BTTBCT-TSBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHS
T ss_pred cCCCCC-CCcEEcccccccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence 999995 9999999999999999999999999999999999999999999999999999999999999864
No 40
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=3.5e-44 Score=285.89 Aligned_cols=142 Identities=29% Similarity=0.525 Sum_probs=134.2
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCcceEEE----ecCCCcc---eeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccc
Q psy17487 3 NIAAQRIKREFKEVIKSEEVAKCAIKLE----LIDDNYT---ELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKF 75 (199)
Q Consensus 3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~----~~~dn~~---~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f 75 (199)
+.|.+||++||++|+ .+.|+.+. +.++|++ +|+++|. |++|||+||.|++.|.||++||++||+|+|
T Consensus 28 s~a~~RL~kEl~~l~-----~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f 101 (190)
T 3o2u_A 28 SAARIRLKRDLDSLD-----LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVC 101 (190)
T ss_dssp CHHHHHHHHHHHTCC-----CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEE
T ss_pred cHHHHHHHHHHHhcc-----CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEE
Confidence 568999999999996 35688887 7788999 9999997 888999999999999999999999999999
Q ss_pred ccccccCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHHHHHHH
Q psy17487 76 LTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNV 151 (199)
Q Consensus 76 ~t~i~HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~ 151 (199)
.|+||||||+. +|.||+++|.++|+|+++|++||.+|+++|.+||+++|+|.+||++|++|+++|.++||+|++.
T Consensus 102 ~t~i~HPnV~~-~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~~~ 176 (190)
T 3o2u_A 102 LKKIFHPNIDL-KGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSG 176 (190)
T ss_dssp CSCCCCTTBCT-TSBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHHHBT
T ss_pred ecCcccCCCCC-CCeEechhccCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHh
Confidence 99999999995 9999999999999999999999999999999999999999999999999999999999999943
No 41
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=2.6e-43 Score=275.88 Aligned_cols=145 Identities=22% Similarity=0.470 Sum_probs=133.2
Q ss_pred CchHHHHHHHHHHHHHHhcC-------C--CCCcceEEEecCCCcceeeEEEeCCCCCCCC--CcEEEEEEEeCCCCCCC
Q psy17487 1 MANIAAQRIKREFKEVIKSE-------E--VAKCAIKLELIDDNYTELKGEIAGPPDTPYE--GGNFVLEIKVPETYPFN 69 (199)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~-------~--~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~--gg~f~~~i~fp~~YP~~ 69 (199)
||+.+.+||++|+++|+++. . .++.++.+.+.++|+++|+++|.||++|||+ ||.|++.|.||++||++
T Consensus 5 Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~ 84 (167)
T 4ds2_A 5 MKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHE 84 (167)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTS
T ss_pred ccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCC
Confidence 88889999999999999863 0 1257899999999999999999999999999 99999999999999999
Q ss_pred CCccccccccccCCccCCCCeeeccCchhhhhhcccHHHHHH-HHHHHHhc--CCCCCchhHHHHHHHhhCHHHHHHHHH
Q psy17487 70 PPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLL-SLQALMAA--AEPDDPQDAVVAKQYKENPEMFTLTAR 146 (199)
Q Consensus 70 pP~v~f~t~i~HPnV~~~~G~icl~~l~~~W~p~~~i~~il~-~i~~ll~~--p~~~~p~n~eaa~~~~~d~~~f~~~ak 146 (199)
||+|+|.|+||||||+ .+|.||+++|.++|+|+++++++|+ .|++|+.. |++++|+|.+||++|++|+++|.++||
T Consensus 85 pP~v~f~t~i~HPnv~-~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~~vr 163 (167)
T 4ds2_A 85 PPTVRFVTPVYSPLVT-GEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVR 163 (167)
T ss_dssp CCEEEESSCCCCSSCC-TTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHHHHHHT
T ss_pred CCEEEEeCCcccccCC-CCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHHHHHHh
Confidence 9999999999999999 5999999999999999999999765 56677764 899999999999999999999999998
No 42
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=1.4e-40 Score=282.56 Aligned_cols=154 Identities=25% Similarity=0.427 Sum_probs=139.5
Q ss_pred CchHHHHHHHHHHHHHHhcCCCC-CcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccc-
Q psy17487 1 MANIAAQRIKREFKEVIKSEEVA-KCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTK- 78 (199)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~-~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~- 78 (199)
||+.+.+||++|+++|+++.+.. ..++.+.+.++|++.|+++|.||++|||+||+|+|.|.||++||++||+|+|.|+
T Consensus 73 ~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~ 152 (323)
T 3ceg_A 73 NSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTG 152 (323)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCST
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccC
Confidence 56789999999999999863221 1366778888999999999999999999999999999999999999999999998
Q ss_pred ----cccCCccCCCCeeeccCch-------hhhhhcc-cHHHHHHHHHHHHh--cCCCCCchhHHH--HHHHhhCHHHHH
Q psy17487 79 ----IWHPNISSVTGAICLDILK-------DQWAAAM-TLRTVLLSLQALMA--AAEPDDPQDAVV--AKQYKENPEMFT 142 (199)
Q Consensus 79 ----i~HPnV~~~~G~icl~~l~-------~~W~p~~-~i~~il~~i~~ll~--~p~~~~p~n~ea--a~~~~~d~~~f~ 142 (199)
||||||+ .+|.||+++|. ++|+|++ +|.+||.+|++||. +|++++|+|.++ +.+|.+|++.|.
T Consensus 153 g~~~ifHPNV~-~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~Y~ 231 (323)
T 3ceg_A 153 GHSVRFNPNLY-NDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYD 231 (323)
T ss_dssp TTTCCCBTTBC-TTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHHHH
T ss_pred CCcccccCCCC-cCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHHHH
Confidence 9999999 59999999996 7999999 89999999999997 566799999987 678999999999
Q ss_pred HHHHHHHHHhcCC
Q psy17487 143 LTARHWTNVYAGG 155 (199)
Q Consensus 143 ~~ak~~~~~~a~~ 155 (199)
++|+.|+++||..
T Consensus 232 ~~vr~~t~k~A~~ 244 (323)
T 3ceg_A 232 GNIRQATVKWAML 244 (323)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHHhhH
Confidence 9999999999865
No 43
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-39 Score=243.64 Aligned_cols=118 Identities=27% Similarity=0.516 Sum_probs=104.2
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccc-
Q psy17487 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKI- 79 (199)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i- 79 (199)
|+ .|.+||++|+++|+++ ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++
T Consensus 4 m~-~a~~RL~kEl~~l~~~---~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 79 (125)
T 2fo3_A 4 MG-NANYRIQKELHNFLNN---PPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPP 79 (125)
T ss_dssp ------CHHHHHHHHHHHS---CCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCC
T ss_pred ch-HHHHHHHHHHHHHHhC---CCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCC
Confidence 54 4789999999999986 567999999889999999999999999999999999999999999999999999997
Q ss_pred ccCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCCC
Q psy17487 80 WHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD 123 (199)
Q Consensus 80 ~HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~ 123 (199)
|||||+. +|.||+++|.++|+|+++|++||.+|++||.+|+.+
T Consensus 80 ~HPnv~~-~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~~~ 122 (125)
T 2fo3_A 80 KHTHVYS-NGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEK 122 (125)
T ss_dssp CBTTBCT-TSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC-----
T ss_pred CCCcCCC-CCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCcccc
Confidence 9999994 999999999999999999999999999999999864
No 44
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=3.4e-40 Score=255.20 Aligned_cols=131 Identities=27% Similarity=0.411 Sum_probs=117.6
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCcceEEEecC-C--CcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccc
Q psy17487 3 NIAAQRIKREFKEVIKSEEVAKCAIKLELID-D--NYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKI 79 (199)
Q Consensus 3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~-d--n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 79 (199)
..+.+||++|+++|+++. ++.|+.+.+.+ + |++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|
T Consensus 20 ~~~~~RL~kEl~~l~~~~--~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i 97 (156)
T 2q0v_A 20 VPRSFRLLDELERGQKGN--VSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKI 97 (156)
T ss_dssp CCHHHHHHHHHHHHHCC---CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCC
T ss_pred chHHHHHHHHHHHHHhCC--CCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEccc
Confidence 357899999999998752 45788888854 2 699999999999999999999999999999999999999999999
Q ss_pred ccCCccCCCCee---eccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhC
Q psy17487 80 WHPNISSVTGAI---CLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKEN 137 (199)
Q Consensus 80 ~HPnV~~~~G~i---cl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d 137 (199)
|||||+. +|.| |+++|. +|+|+++|++||.+|++||.+|++++|+|.+||.+|++|
T Consensus 98 ~HPNV~~-~G~icisCL~iL~-~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~~n 156 (156)
T 2q0v_A 98 EMSCVDN-CGRVIKNNLHILK-NWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN 156 (156)
T ss_dssp CCTTBCT-TSBBCGGGSHHHH-TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC---
T ss_pred ccCCCcc-CCeEehhhccccc-CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhhhC
Confidence 9999995 8999 888886 599999999999999999999999999999999998765
No 45
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=2.1e-39 Score=251.42 Aligned_cols=127 Identities=28% Similarity=0.418 Sum_probs=115.2
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCcc-eEEEec-CCC--cceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccc
Q psy17487 3 NIAAQRIKREFKEVIKSEEVAKCA-IKLELI-DDN--YTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTK 78 (199)
Q Consensus 3 ~~a~~RL~~E~~~l~~~~~~~~~~-i~v~~~-~dn--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 78 (199)
..+.+||++|+++|+++ ++.| +.+.+. ++| +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 24 ~p~~~RL~kEl~~l~~~---~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~ 100 (160)
T 2a4d_A 24 VPRNFRLLEELEEGQKG---VGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTK 100 (160)
T ss_dssp HHHHHHHHHHHHHHHSC---CTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred chHHHHHHHHHHHHHhC---CCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecC
Confidence 45789999999999885 3455 777764 344 8999999999999999999999999999999999999999999
Q ss_pred cccCCccCCCCeeeccCch--hhhhhcccHHHHHHHHHHHHh-cCCCCCchhHHHHH
Q psy17487 79 IWHPNISSVTGAICLDILK--DQWAAAMTLRTVLLSLQALMA-AAEPDDPQDAVVAK 132 (199)
Q Consensus 79 i~HPnV~~~~G~icl~~l~--~~W~p~~~i~~il~~i~~ll~-~p~~~~p~n~eaa~ 132 (199)
||||||+..+|.||+++|. ++|+|+++|++||.+|++||. .||+++|+|.|||.
T Consensus 101 i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa~ 157 (160)
T 2a4d_A 101 INMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQC 157 (160)
T ss_dssp CCCTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTCB
T ss_pred ceeCCEECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhcc
Confidence 9999999669999999996 899999999999999999996 59999999999873
No 46
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=3e-40 Score=250.95 Aligned_cols=131 Identities=29% Similarity=0.463 Sum_probs=115.3
Q ss_pred Cc-hHHHHHHHHHHHHHHhcCCCCCcceEEEecC-C--CcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccc
Q psy17487 1 MA-NIAAQRIKREFKEVIKSEEVAKCAIKLELID-D--NYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFL 76 (199)
Q Consensus 1 Ms-~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~-d--n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~ 76 (199)
|+ ..+.+||++|+++|+++. ++.|+.+.+.+ + |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.
T Consensus 2 m~~~~~~~RL~kEl~~l~~~~--~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 79 (138)
T 1jat_B 2 MSKVPRNFRLLEELEKGEKGF--GPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFI 79 (138)
T ss_dssp -CCCCHHHHHHHHHHHHHC------CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred cchHHHHHHHHHHHHHHHhcC--CCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEE
Confidence 66 346799999999998752 45788888854 3 599999999999999999999999999999999999999999
Q ss_pred cccccCCccCCCCee--eccCchhhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHH
Q psy17487 77 TKIWHPNISSVTGAI--CLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQY 134 (199)
Q Consensus 77 t~i~HPnV~~~~G~i--cl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~ 134 (199)
|+||||||+..+|.| |+++|. +|+|+++|++||.+|++||.+|++++|+|.+||.+|
T Consensus 80 t~i~HPnv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~y 138 (138)
T 1jat_B 80 SKINLPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 138 (138)
T ss_dssp BCCCCTTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred cccccCCEeCCCCEEeeecccCC-CCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhcC
Confidence 999999999655999 899885 899999999999999999999999999999988654
No 47
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=1.6e-38 Score=240.82 Aligned_cols=115 Identities=26% Similarity=0.517 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccc-ccC
Q psy17487 4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKI-WHP 82 (199)
Q Consensus 4 ~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HP 82 (199)
.+.+||++|+++|+++ ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |||
T Consensus 20 ~~~~RL~kEl~~l~~~---~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HP 96 (136)
T 2h2y_A 20 NANYRIQKELNNFLKN---PPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHT 96 (136)
T ss_dssp SHHHHHHHHHHHHHHS---CCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCT
T ss_pred HHHHHHHHHHHHHHhC---CCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCC
Confidence 5789999999999986 567999999889999999999999999999999999999999999999999999997 999
Q ss_pred CccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHhcCCC
Q psy17487 83 NISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEP 122 (199)
Q Consensus 83 nV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~ 122 (199)
||+. +|.||+++|.++|+|+++|.+||.+|++||.+|+.
T Consensus 97 nv~~-~G~ICl~iL~~~WsP~~ti~~vL~si~sll~~p~~ 135 (136)
T 2h2y_A 97 HVYS-NGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE 135 (136)
T ss_dssp TBCT-TCCBCCGGGTTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred cCCC-CCEEECccccCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence 9995 99999999999999999999999999999999874
No 48
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=9.9e-39 Score=250.13 Aligned_cols=125 Identities=29% Similarity=0.442 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcc-eEEEec-CCC--cceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccccc
Q psy17487 4 IAAQRIKREFKEVIKSEEVAKCA-IKLELI-DDN--YTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKI 79 (199)
Q Consensus 4 ~a~~RL~~E~~~l~~~~~~~~~~-i~v~~~-~dn--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 79 (199)
.+.+||++|+++|+++ ++.| +.+.+. ++| +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus 35 p~~~RL~kEl~~l~~~---~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i 111 (170)
T 2hlw_A 35 PRNFRLLEELEEGQKG---VGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI 111 (170)
T ss_dssp CHHHHHHHHHHHHHHC---CGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCC
T ss_pred HHHHHHHHHHHHHHhC---CCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEeccc
Confidence 4789999999999986 4556 667763 444 99999999999999999999999999999999999999999999
Q ss_pred ccCCccCCCCeeeccCch--hhhhhcccHHHHHHHHHHHHhc-CCCCCchhHHHH
Q psy17487 80 WHPNISSVTGAICLDILK--DQWAAAMTLRTVLLSLQALMAA-AEPDDPQDAVVA 131 (199)
Q Consensus 80 ~HPnV~~~~G~icl~~l~--~~W~p~~~i~~il~~i~~ll~~-p~~~~p~n~eaa 131 (199)
|||||+..+|.||+++|. ++|+|+++|++||.+|++||.+ ||+++|+|.|||
T Consensus 112 ~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 166 (170)
T 2hlw_A 112 NMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 166 (170)
T ss_dssp CCSSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred ccCCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence 999999569999999996 8999999999999999999985 999999999987
No 49
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.3e-38 Score=238.27 Aligned_cols=113 Identities=31% Similarity=0.654 Sum_probs=104.6
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCcceEEE--ecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccc
Q psy17487 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLE--LIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTK 78 (199)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~--~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 78 (199)
|++. .+||++|+++|+++ ++.|+.+. +.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 20 Ms~~-~~RL~kEl~~l~~~---~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~ 95 (136)
T 2a7l_A 20 MASM-QKRLQKELLALQND---PPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGE 95 (136)
T ss_dssp GTTS-CHHHHHHHHHHHHS---CCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESS
T ss_pred ccHH-HHHHHHHHHHHHhC---CCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCC
Confidence 5553 49999999999986 56788865 778899999999999999999999999999999999999999999999
Q ss_pred cc--cCCccCCCCeeeccCchhhhhhcccHHHHHHHHHHHHh
Q psy17487 79 IW--HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMA 118 (199)
Q Consensus 79 i~--HPnV~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~ 118 (199)
+| ||||+. +|.||+++|.++|+|+++|++||.+|++||.
T Consensus 96 i~~~HPNV~~-~G~ICL~iL~~~WsP~~ti~~vL~sI~slL~ 136 (136)
T 2a7l_A 96 NIPVHPHVYS-NGHICLSILTEDWSPALSVQSVCLSIISMLS 136 (136)
T ss_dssp CCCCBTTBCT-TCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred CcCCCccCCC-CCeEEchhcCCCCCCCCcHHHHHHHHHHHhC
Confidence 99 999995 9999999999999999999999999999974
No 50
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=100.00 E-value=1.4e-37 Score=247.00 Aligned_cols=142 Identities=20% Similarity=0.469 Sum_probs=122.2
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCC-CCCCCCC-----------cEEEEEEEeCCCCCC
Q psy17487 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGP-PDTPYEG-----------GNFVLEIKVPETYPF 68 (199)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp-~~tpy~g-----------g~f~~~i~fp~~YP~ 68 (199)
|+..+.+||++||++|+++....+.++.+.+.++|+++|+++|.|| ++|||+| |.|+++|.||++||+
T Consensus 24 ~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~ 103 (186)
T 1zuo_A 24 GSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPF 103 (186)
T ss_dssp CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTS
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCC
Confidence 6788999999999999885210156899999999999999999997 8999998 899999999999999
Q ss_pred CCCccccccccccC-CccCCCCeeeccCch-hhhhhcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhCHHHHHHHHH
Q psy17487 69 NPPKVKFLTKIWHP-NISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTAR 146 (199)
Q Consensus 69 ~pP~v~f~t~i~HP-nV~~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~ak 146 (199)
+||+|+|.|++||| ||+ .+|.||+++|. ++|+|+++|++||.+|++||.+|++.. .|+.++.+|.+.++
T Consensus 104 ~PP~V~f~tpi~hPnnV~-~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a~~--------~~~~~~~~Y~~~~~ 174 (186)
T 1zuo_A 104 DPPFVRVVLPVLSGGYVL-GGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARV--------QFGANKNQYNLARA 174 (186)
T ss_dssp SCCEEEEEESCEESTTBC-GGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEE--------CTTCCTTCCCHHHH
T ss_pred CCCeEEEeCCccCCCccC-CCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCChhH--------hhccCHHHHhHHHH
Confidence 99999999999999 699 59999999995 799999999999999999999987633 24445666766666
Q ss_pred HHHHH
Q psy17487 147 HWTNV 151 (199)
Q Consensus 147 ~~~~~ 151 (199)
..+.+
T Consensus 175 ~~~~~ 179 (186)
T 1zuo_A 175 QQSYN 179 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 51
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-35 Score=236.29 Aligned_cols=116 Identities=29% Similarity=0.543 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccC
Q psy17487 3 NIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHP 82 (199)
Q Consensus 3 ~~a~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 82 (199)
+.+.+||++|+++|+++ ++.|+.+.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+ ||
T Consensus 13 ~~a~~RL~kEl~~l~~~---~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~ 87 (187)
T 2f4w_A 13 TTATQRLKQDYLRIKKD---PVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NG 87 (187)
T ss_dssp -CHHHHHHHHHHHHHHS---CCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CS
T ss_pred cHHHHHHHHHHHHHHhC---CCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cc
Confidence 46889999999999986 56799999999999999999999999999999999999999999999999999999 99
Q ss_pred CccCCCCeeeccCc---hhhhhhcccHHHHHHHHHHHHhcCCCCC
Q psy17487 83 NISSVTGAICLDIL---KDQWAAAMTLRTVLLSLQALMAAAEPDD 124 (199)
Q Consensus 83 nV~~~~G~icl~~l---~~~W~p~~~i~~il~~i~~ll~~p~~~~ 124 (199)
|++. +|.||+++| .++|+|+++|.+||.+|++||.+|+++.
T Consensus 88 ~~~~-~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~ 131 (187)
T 2f4w_A 88 RFKC-NTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTL 131 (187)
T ss_dssp SBCT-TSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCT
T ss_pred eecc-CCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 9995 999999999 6899999999999999999999999864
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.94 E-value=1.2e-27 Score=183.70 Aligned_cols=113 Identities=20% Similarity=0.301 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCc----------EEEEEEEeCCCCCCCCCcccc
Q psy17487 6 AQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGG----------NFVLEIKVPETYPFNPPKVKF 75 (199)
Q Consensus 6 ~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~f 75 (199)
.+||++||+.|.+. +.+..+|+..|.+.+.||.+|+|+|| .|.++|.||++||++||+|+|
T Consensus 34 ~~RL~eE~k~L~k~---------v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F 104 (172)
T 2z6o_A 34 VQRLKEEYQSLIRY---------VENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAV 104 (172)
T ss_dssp HHHHHHHHHHHHHH---------HHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBC
T ss_pred HHHHHHHHHHHHHH---------hccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeee
Confidence 89999999999883 34566799999999999999999999 999999999999999999999
Q ss_pred ccc-cccCCccCCCCeeeccCc-hhhhh---hcccHHHHHHHHHHHHhcCCCCCchhHHHHHHHhh
Q psy17487 76 LTK-IWHPNISSVTGAICLDIL-KDQWA---AAMTLRTVLLSLQALMAAAEPDDPQDAVVAKQYKE 136 (199)
Q Consensus 76 ~t~-i~HPnV~~~~G~icl~~l-~~~W~---p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~ 136 (199)
.+. +|||||+. +|+|||++| ...|+ |+++|.++|.- -...++..|+..+...
T Consensus 105 ~~~~~~hpnmY~-~G~ICLdIL~kp~Ws~~~P~~~IahiL~l--------gl~pwla~eip~lv~~ 161 (172)
T 2z6o_A 105 PELDGKTAKMYR-GGKICLTDHFKPLWARNVPKFGLAHLMAL--------GLGPWLAVEIPDLIQK 161 (172)
T ss_dssp GGGTTTCSSBCT-TSBBCCCTTHHHHHHHHTTSCCHHHHHHH--------THHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCC-CCcEechhhccccccccCCccCHHHHHhh--------ccCchhhhhhHHHHHc
Confidence 998 99999995 999999999 54455 99999999843 2334566666666543
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.80 E-value=1.2e-19 Score=140.30 Aligned_cols=116 Identities=22% Similarity=0.314 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcE---EEEEEEeCCCCCCCCCccccccc-----
Q psy17487 7 QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGN---FVLEIKVPETYPFNPPKVKFLTK----- 78 (199)
Q Consensus 7 ~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~---f~~~i~fp~~YP~~pP~v~f~t~----- 78 (199)
+|..+|..++.+.-........+...+|....+-+.+.|.-.++|+|+. |.+.|.||.+||++||.|.|.++
T Consensus 31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~ 110 (162)
T 3r3q_A 31 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMN 110 (162)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTT
T ss_pred hHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCcccc
Confidence 5677888877664222223344455667666777777777779999998 88999999999999999988651
Q ss_pred -----cc-cCCccCCCCeeeccCchhhhhh-cccHHHHHHHHHHHHhcCCCCC
Q psy17487 79 -----IW-HPNISSVTGAICLDILKDQWAA-AMTLRTVLLSLQALMAAAEPDD 124 (199)
Q Consensus 79 -----i~-HPnV~~~~G~icl~~l~~~W~p-~~~i~~il~~i~~ll~~p~~~~ 124 (199)
|+ ||||| .+|+||+++| .+|+| +.++.++|.+|+++|.+|+++.
T Consensus 111 ~~~~~I~~hpnVD-~~G~I~lpyL-~~W~p~~s~L~~ll~~l~~lf~ep~~d~ 161 (162)
T 3r3q_A 111 TISSSLPIQEYID-SNGWIALPIL-HAWDPAAMNLIMVVQELMSLLHEPPQDQ 161 (162)
T ss_dssp TSCTTSTHHHHBC-TTSBBCCGGG-GSCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred ccccccCCCCCCC-CCCcEeCccc-ccCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 77 99999 4999999999 57999 6899999999999999999875
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.74 E-value=1.1e-18 Score=131.03 Aligned_cols=95 Identities=23% Similarity=0.403 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCc----------EEEEEEEeCCCCCCCCCcccc
Q psy17487 6 AQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGG----------NFVLEIKVPETYPFNPPKVKF 75 (199)
Q Consensus 6 ~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~f 75 (199)
.+||..||..|.+. |....++-..|...+.|+.||+|.|+ .|.+++.||.+||.+||.|+|
T Consensus 36 ~~RlkeEy~alI~y---------v~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~F 106 (168)
T 3kpa_A 36 TARLKEEYASLITY---------VEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIAL 106 (168)
T ss_dssp HHHHHHHHHHHHHH---------HHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBC
T ss_pred HHHHHHHHHHHHHH---------HHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeec
Confidence 68999999999763 22333445689999999999999999 999999999999999999999
Q ss_pred ccc-cccCCccCCCCeeeccCc-hhhhh---hcccHHHHH
Q psy17487 76 LTK-IWHPNISSVTGAICLDIL-KDQWA---AAMTLRTVL 110 (199)
Q Consensus 76 ~t~-i~HPnV~~~~G~icl~~l-~~~W~---p~~~i~~il 110 (199)
.+. .+|||++. +|+|||+++ ..-|+ |.++|.+.|
T Consensus 107 p~ldgkt~kmYr-~GkICLdIhwkPlW~~n~P~fGiahal 145 (168)
T 3kpa_A 107 PELEGKTVKMYR-GGKICMTTHFFPLWARNVPYFGISHVL 145 (168)
T ss_dssp GGGTTTCSSEET-TTEECCCTTHHHHHHHTTTTCCHHHHH
T ss_pred ccccCcCccccC-CCcEEeccccchhhHhcCCchhHHHHH
Confidence 995 89999995 999999998 34443 445677665
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.49 E-value=6.5e-14 Score=106.33 Aligned_cols=80 Identities=24% Similarity=0.532 Sum_probs=71.0
Q ss_pred CCcceeeEEEeCCCCCCCCCcEEE--EEEEeCCCCCCCCCccccccc------cccCCccCCCCeeeccCchhhhhh-cc
Q psy17487 34 DNYTELKGEIAGPPDTPYEGGNFV--LEIKVPETYPFNPPKVKFLTK------IWHPNISSVTGAICLDILKDQWAA-AM 104 (199)
Q Consensus 34 dn~~~w~~~i~Gp~~tpy~gg~f~--~~i~fp~~YP~~pP~v~f~t~------i~HPnV~~~~G~icl~~l~~~W~p-~~ 104 (199)
.++..|.++|. .+|+|+.|. +.|.||.+||++||.| |.++ ..|||||. +|+||++.|. +|++ ..
T Consensus 51 ~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~-~G~i~lpyL~-~W~~~~s 123 (146)
T 3obq_A 51 RELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDA-NGKIYLPYLH-EWKHPQS 123 (146)
T ss_dssp CEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCT-TCBBCCHHHH-TCCTTTC
T ss_pred heEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCC-CCCEeccccc-ccCCCCC
Confidence 48899999997 679999998 5899999999999999 6665 48999995 9999999994 5997 89
Q ss_pred cHHHHHHHHHHHHhcC
Q psy17487 105 TLRTVLLSLQALMAAA 120 (199)
Q Consensus 105 ~i~~il~~i~~ll~~p 120 (199)
++.+++..++++|.+.
T Consensus 124 nL~~ll~~l~~~F~~e 139 (146)
T 3obq_A 124 DLLGLIQVMIVVFGDE 139 (146)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhhC
Confidence 9999999999999874
No 56
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=99.21 E-value=7.7e-12 Score=89.87 Aligned_cols=80 Identities=21% Similarity=0.234 Sum_probs=36.9
Q ss_pred CCCCCchhHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCC---CcchHHHHHHHHhcCC-ChHHHHHHHhhcCCchHHHHH
Q psy17487 120 AEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSK---NPDFDSKIQRLTDMGV-MSHDARVALSTYNWELERATE 195 (199)
Q Consensus 120 p~~~~p~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~~~---~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~e 195 (199)
.....|.+.++|++|.++++.|..+|+.|+.-+|.++.. ...++..+++|.+||| +.+.++.||+..+|+++.|+|
T Consensus 21 ~~~~~PQDA~VA~qy~~~~~~f~~TAr~WT~~~a~~~~~~~~e~~~~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe 100 (108)
T 2cwb_A 21 ETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSQWQPQLQQLRDMGIQDDELSLRALQATGGDIQAALE 100 (108)
T ss_dssp ------------------------------------------CCTTHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred cccCCchhHHHHHHHHhchhccccccccccccCcCCCCCCCcccchHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 445669999999999999999999999999888876544 3568999999999999 557999999999999999999
Q ss_pred hhhC
Q psy17487 196 AIFT 199 (199)
Q Consensus 196 ~~~~ 199 (199)
.||+
T Consensus 101 ~L~~ 104 (108)
T 2cwb_A 101 LIFA 104 (108)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9983
No 57
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.53 E-value=8.5e-08 Score=59.31 Aligned_cols=42 Identities=19% Similarity=0.303 Sum_probs=38.9
Q ss_pred CCcchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 158 KNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 158 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
.+++++..+++|++|||+++.|+.||+.++|+++.|+|.|++
T Consensus 4 ~~~~~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 4 TGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp CSHHHHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred CCccCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 356788999999999999999999999999999999999974
No 58
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=98.47 E-value=3.2e-07 Score=57.38 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=39.0
Q ss_pred CCcchHHHHHHHHhcCC-ChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 158 KNPDFDSKIQRLTDMGV-MSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 158 ~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
.+..++..+++|.+||| +++.++.||+.++|+++.|+|.||+
T Consensus 8 p~~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 8 PEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp TTTTTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 36678999999999999 9999999999999999999999985
No 59
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=98.38 E-value=5.5e-07 Score=52.96 Aligned_cols=39 Identities=33% Similarity=0.469 Sum_probs=36.1
Q ss_pred cchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487 160 PDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF 198 (199)
Q Consensus 160 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~ 198 (199)
++++..|++|++|||+.+.|+.||+.++|+++.|++.|+
T Consensus 2 ~~~~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 2 PGLNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp -CHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 567889999999999999999999999999999999885
No 60
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.35 E-value=6.5e-07 Score=59.81 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=38.8
Q ss_pred CcchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 159 NPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 159 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
.++++..|++|++|||+++.|+.||+.++|+++.|+|.||+
T Consensus 26 ~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 26 VAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp SCCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CcccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 56789999999999999999999999999999999999985
No 61
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=98.35 E-value=3.3e-07 Score=57.53 Aligned_cols=41 Identities=20% Similarity=0.311 Sum_probs=38.0
Q ss_pred CcchHHHHHHHHhcCC-ChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 159 NPDFDSKIQRLTDMGV-MSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 159 ~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
+..++.++++|.+||| +.+.++.||+.++|+++.|+|.||+
T Consensus 8 e~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 8 EVRFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5568899999999999 9999999999999999999999973
No 62
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=98.28 E-value=1.1e-06 Score=53.49 Aligned_cols=40 Identities=18% Similarity=0.333 Sum_probs=36.0
Q ss_pred cchHHHHHHHHhcCC-ChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 160 PDFDSKIQRLTDMGV-MSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 160 ~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
..++..+++|.+||| +..+++.||+..+|+++.|+|.||+
T Consensus 5 ~~~~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 5 ERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 457889999999999 5677899999999999999999985
No 63
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.25 E-value=1.3e-06 Score=52.25 Aligned_cols=37 Identities=32% Similarity=0.591 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 163 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 163 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
+..|++|.+|||+.+.|+.||+.++|+++.|++.||+
T Consensus 5 e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 5 SLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 5789999999999999999999999999999999985
No 64
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.19 E-value=1.9e-06 Score=54.22 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=36.0
Q ss_pred CcchHHHHHHHHhcCCC-hHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 159 NPDFDSKIQRLTDMGVM-SHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 159 ~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
...++..+++|.+|||. ..+++.||...+|+++.|+|.||+
T Consensus 6 ~~~~~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 6 SGHFQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQ 47 (54)
T ss_dssp CCSSHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 45689999999999994 556799999999999999999983
No 65
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.12 E-value=3.1e-06 Score=56.59 Aligned_cols=41 Identities=15% Similarity=0.280 Sum_probs=37.5
Q ss_pred CcchHHHHHHHHhcCC-ChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 159 NPDFDSKIQRLTDMGV-MSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 159 ~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
...++.++++|.+||| ++++++.||...+|+++.|+|.||+
T Consensus 26 e~~ye~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 26 EGRYQQELEELKALGFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp TTTSHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 5568999999999999 6788899999999999999999985
No 66
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.09 E-value=2.6e-06 Score=54.37 Aligned_cols=41 Identities=17% Similarity=0.332 Sum_probs=36.4
Q ss_pred CcchHHHHHHHHhcCC-ChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 159 NPDFDSKIQRLTDMGV-MSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 159 ~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
...++..+++|.+||| +.++++.||+..+|+++.|+|.||+
T Consensus 14 e~~~~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 14 EERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3457889999999999 5778899999999999999999984
No 67
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.07 E-value=3.3e-06 Score=57.66 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=36.0
Q ss_pred hHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 162 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 162 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
.+..|++|++|||+++.|+.||+..+|+++.|+|.||+
T Consensus 29 ~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~s 66 (83)
T 1veg_A 29 SQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAH 66 (83)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 57899999999999999999999999999999999974
No 68
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.04 E-value=4.5e-06 Score=54.17 Aligned_cols=38 Identities=26% Similarity=0.375 Sum_probs=35.5
Q ss_pred hHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 162 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 162 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
-+..|++|++|||+.+.|+.||+.++|+++.|+|.||+
T Consensus 9 ~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~ 46 (63)
T 1wji_A 9 DEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLT 46 (63)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 46789999999999999999999999999999999973
No 69
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=97.97 E-value=6.6e-06 Score=54.95 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=35.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 162 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 162 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
-+.+|++|++|||+++.|+.||+.++|+++.|+|.||+
T Consensus 29 ~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 29 DQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 47789999999999999999999999999999999974
No 70
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.90 E-value=1.3e-05 Score=52.01 Aligned_cols=39 Identities=31% Similarity=0.368 Sum_probs=36.0
Q ss_pred chHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 161 DFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 161 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
..+..+++|++|||+.+.|+.||+.++|++++|+|.||+
T Consensus 8 ~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~ 46 (63)
T 2dak_A 8 PPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFS 46 (63)
T ss_dssp CCHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 357889999999999999999999999999999999873
No 71
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=97.86 E-value=7.2e-06 Score=50.05 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=36.2
Q ss_pred cchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 160 PDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 160 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
++.+..|++|++|||+.+.|+.||..++|+.+.|.+.||+
T Consensus 2 ~~e~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 2 SQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS 41 (47)
T ss_dssp -CCHHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3457789999999999999999999999999999999985
No 72
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.85 E-value=1.7e-05 Score=56.18 Aligned_cols=41 Identities=27% Similarity=0.551 Sum_probs=38.8
Q ss_pred CcchHHHHHHHHhc-CCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 159 NPDFDSKIQRLTDM-GVMSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 159 ~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
+++++..|+.+++| |++.+.|+.||..++||+..|++.||.
T Consensus 36 d~d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lle 77 (104)
T 1wj7_A 36 DADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLE 77 (104)
T ss_dssp CHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred cccHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 57899999999999 999999999999999999999999984
No 73
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.79 E-value=3.7e-05 Score=46.74 Aligned_cols=37 Identities=35% Similarity=0.448 Sum_probs=34.5
Q ss_pred hHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 162 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 162 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
.+..+++|++|||+.+.|+.||+.++ +++.|+|.|++
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 9 NQQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 47889999999999999999999998 99999999984
No 74
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.79 E-value=4.8e-05 Score=47.51 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=37.1
Q ss_pred CCcchHHHHHHHHhcCC-ChHHHHHHHhhcCCchHHHHHhhh
Q psy17487 158 KNPDFDSKIQRLTDMGV-MSHDARVALSTYNWELERATEAIF 198 (199)
Q Consensus 158 ~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~e~~~ 198 (199)
+++.+..++.+|.+||| +...-+.||+..+|++++|+++|+
T Consensus 5 ~ee~~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll 46 (54)
T 2cp8_A 5 SSGQTAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELL 46 (54)
T ss_dssp SCTTHHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 35567889999999999 888888999999999999999997
No 75
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.78 E-value=2.9e-05 Score=53.27 Aligned_cols=37 Identities=35% Similarity=0.478 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 163 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 163 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
+..|++|++|||+++.|+.||+..+|++++|+|.||+
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~ 58 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLE 58 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 7789999999999999999999999999999999984
No 76
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.70 E-value=4.2e-05 Score=49.66 Aligned_cols=48 Identities=19% Similarity=0.176 Sum_probs=39.5
Q ss_pred HHHHHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHhhcCC-chHHHHHhhhC
Q psy17487 147 HWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNW-ELERATEAIFT 199 (199)
Q Consensus 147 ~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~e~~~~ 199 (199)
.|+..|+..+ -+..|++|++|||+.+.|+.||+.++| +++.|+|.||+
T Consensus 9 ~~t~~ya~~~-----~e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 9 NRQQRPGTIK-----HGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp CSCCSSCSSS-----CCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred hhhhcccccC-----CHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 3555555541 245799999999999999999999999 99999999984
No 77
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=6.5e-05 Score=50.18 Aligned_cols=38 Identities=24% Similarity=0.192 Sum_probs=34.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHhhcC-CchHHHHHhhhC
Q psy17487 162 FDSKIQRLTDMGVMSHDARVALSTYN-WELERATEAIFT 199 (199)
Q Consensus 162 ~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~e~~~~ 199 (199)
-+..|++|++|||+++.|+.||+.++ |++++|+|.||+
T Consensus 9 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~ 47 (74)
T 2dag_A 9 DESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMS 47 (74)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 36789999999999999999999999 589999999873
No 78
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=7.7e-05 Score=50.93 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=35.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 162 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 162 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
-+..+++|++|||+.+.|+.||..++|+++.|++.||+
T Consensus 29 ~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~ 66 (83)
T 2dai_A 29 DEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIE 66 (83)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 46789999999999999999999999999999999873
No 79
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.50 E-value=0.0001 Score=47.80 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHhhc-CCchHHHHHhhh
Q psy17487 163 DSKIQRLTDMGVMSHDARVALSTY-NWELERATEAIF 198 (199)
Q Consensus 163 ~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~e~~~ 198 (199)
+..|++|++|||+...|+.||+.+ +|++++|++.||
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl 46 (64)
T 1whc_A 10 LTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLM 46 (64)
T ss_dssp CCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 457899999999999999999999 699999999987
No 80
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=97.44 E-value=0.00012 Score=50.00 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=34.9
Q ss_pred hHHHHHHHHhcCCChHHHHHHHhhcC-CchHHHHHhhhC
Q psy17487 162 FDSKIQRLTDMGVMSHDARVALSTYN-WELERATEAIFT 199 (199)
Q Consensus 162 ~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~e~~~~ 199 (199)
.+..|++|++|||+++.|+.||...+ |+++.|++.||+
T Consensus 29 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~ 67 (84)
T 1vek_A 29 NEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLS 67 (84)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 47889999999999999999999995 999999999873
No 81
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.42 E-value=0.00035 Score=43.12 Aligned_cols=41 Identities=24% Similarity=0.283 Sum_probs=36.0
Q ss_pred CCcchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487 158 KNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF 198 (199)
Q Consensus 158 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~ 198 (199)
..+..+..|.+|+++||+.++|+.||...+++++.|..-|+
T Consensus 5 ~~~~~e~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ 45 (53)
T 2d9s_A 5 SSGQLSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILR 45 (53)
T ss_dssp CCSCSHHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CccchHHHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34556788999999999999999999999999999986654
No 82
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.37 E-value=0.00019 Score=46.88 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=35.0
Q ss_pred CcchHHHHHHHHhcCCCh-HHHHHHHhhcCCchHHHHHhhhC
Q psy17487 159 NPDFDSKIQRLTDMGVMS-HDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 159 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
+..+...+.+|.+|||.. .+++.||...+.++++|+|.||+
T Consensus 16 e~~y~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 16 EVRFSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 335788999999999854 45589999999999999999983
No 83
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.37 E-value=0.00014 Score=47.19 Aligned_cols=36 Identities=28% Similarity=0.237 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHhhcCC-chHHHHHhhh
Q psy17487 163 DSKIQRLTDMGVMSHDARVALSTYNW-ELERATEAIF 198 (199)
Q Consensus 163 ~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~e~~~ 198 (199)
+..+++|++|||+.+.|+.||..+++ ++++|++.||
T Consensus 10 e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~ 46 (64)
T 2crn_A 10 PSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLH 46 (64)
T ss_dssp CSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45789999999999999999999976 9999999987
No 84
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.31 E-value=0.00018 Score=45.86 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=37.3
Q ss_pred CcchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 159 NPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 159 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
.+.....|..+++|||..+.|+.||...+-++|+|++-||+
T Consensus 16 s~se~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFS 56 (63)
T 1wgn_A 16 SPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFA 56 (63)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34567889999999999999999999999999999999984
No 85
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=97.13 E-value=0.00047 Score=53.14 Aligned_cols=74 Identities=19% Similarity=0.229 Sum_probs=57.3
Q ss_pred hhHHHHHHHhhCHHHHHHHHHHHHHH--------h------------cC----------C----C-CCCcchHHHHHHHH
Q psy17487 126 QDAVVAKQYKENPEMFTLTARHWTNV--------Y------------AG----------G----P-SKNPDFDSKIQRLT 170 (199)
Q Consensus 126 ~n~eaa~~~~~d~~~f~~~ak~~~~~--------~------------a~----------~----~-~~~~~~~~~~~~~~ 170 (199)
.|+...++..+|++.|.+..-+-... + .. + . ...++.+..|++|+
T Consensus 59 ~NPqL~qlI~qNqe~Fl~mLnep~~~~~~~m~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~i~~tpee~eaI~rL~ 138 (171)
T 2qsf_X 59 RYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLC 138 (171)
T ss_dssp HCTTHHHHHHHCHHHHHHHHHHCCC-------------------------------------EECCCCCHHHHHHHHHHH
T ss_pred hCHHHHHHHHHCHHHHHHHHhCcccchhhhhcccccccccccccccccccccccccCCCCCCcccCCCCccHHHHHHHHH
Confidence 57788899999999999987531100 0 00 0 0 12466788999999
Q ss_pred hcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 171 DMGVMSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 171 ~~g~~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
++||+++.|+.|+..++|+.+.|.+.||+
T Consensus 139 ~mGF~r~~viqA~~ac~knee~Aan~L~~ 167 (171)
T 2qsf_X 139 ELGFERDLVIQVYFACDKNEEAAANILFS 167 (171)
T ss_dssp TTTCCHHHHHHHHHHTTTCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 99999999999999999999999999984
No 86
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=97.12 E-value=0.00048 Score=50.49 Aligned_cols=39 Identities=33% Similarity=0.377 Sum_probs=36.3
Q ss_pred chHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 161 DFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 161 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
..+..+++|++|||+.+.|+.||..++|+++.|+|.|++
T Consensus 77 ~~e~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~ 115 (126)
T 2lbc_A 77 PPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFS 115 (126)
T ss_dssp CCHHHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 357889999999999999999999999999999999985
No 87
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=97.07 E-value=0.00021 Score=61.60 Aligned_cols=75 Identities=16% Similarity=0.150 Sum_probs=59.6
Q ss_pred chhHHHHHHHhhCHHHHHHHHHHHHHHhc-C-------------CC-----CCCcchHHHHHHHHhcCCChHHHHHHHhh
Q psy17487 125 PQDAVVAKQYKENPEMFTLTARHWTNVYA-G-------------GP-----SKNPDFDSKIQRLTDMGVMSHDARVALST 185 (199)
Q Consensus 125 p~n~eaa~~~~~d~~~f~~~ak~~~~~~a-~-------------~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 185 (199)
-.|++.++++++|.+.|.++..+.+..-. + .. ...++....|.+|++|||+.+.|+.||..
T Consensus 269 ~~nP~l~~~I~~n~~~Fl~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~ee~eaI~rL~~mGF~~~~a~~al~a 348 (368)
T 1oqy_A 269 QENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFA 348 (368)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHSCCCCSCSSCCCSSSSCCCSCCCTTCSSCCCCTTTHHHHHHHHHHTCCSHHHHHHTSS
T ss_pred hhCHHHHHHHHHCHHHHHHHHcCcccccccccccccccccccccCCccccccCCCcCHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35889999999999999999865321100 0 00 11356788999999999999999999999
Q ss_pred cCCchHHHHHhhhC
Q psy17487 186 YNWELERATEAIFT 199 (199)
Q Consensus 186 ~~~~~~~~~e~~~~ 199 (199)
++|+.+.|.+.||+
T Consensus 349 ~~~n~e~A~~~L~~ 362 (368)
T 1oqy_A 349 CEKNENLAANFLLS 362 (368)
T ss_dssp SSSCSSHHHHHHHH
T ss_pred cCCCHHHHHHHHhh
Confidence 99999999999984
No 88
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=97.05 E-value=0.0011 Score=40.64 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=33.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487 162 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF 198 (199)
Q Consensus 162 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~ 198 (199)
.+..|.+|+++||+.++|+.||...+++++.|.--|+
T Consensus 11 ~~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLl 47 (52)
T 2ooa_A 11 VDAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILR 47 (52)
T ss_dssp CHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4589999999999999999999999999999986554
No 89
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=96.83 E-value=0.0012 Score=47.99 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=35.5
Q ss_pred hHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 162 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 162 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
+.+.+..|.+|||+...|+.||..++.+.+.|+|.|++
T Consensus 76 ~~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~ 113 (118)
T 4ae4_A 76 FLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMA 113 (118)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 56789999999999999999999999999999999974
No 90
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=96.74 E-value=0.0012 Score=56.84 Aligned_cols=42 Identities=19% Similarity=0.303 Sum_probs=39.1
Q ss_pred CCcchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 158 KNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 158 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
...+++..|.+|.+|||+++.|+.||+..+|+.++|+|+|++
T Consensus 164 ~g~~~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~ 205 (368)
T 1oqy_A 164 TGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT 205 (368)
T ss_dssp CTTTHHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTT
T ss_pred CCcchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 356789999999999999999999999999999999999985
No 91
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=96.69 E-value=0.004 Score=37.10 Aligned_cols=39 Identities=23% Similarity=0.264 Sum_probs=35.4
Q ss_pred cchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487 160 PDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF 198 (199)
Q Consensus 160 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~ 198 (199)
++.+..+..|++|||+.++++.||....-+++.|..-|+
T Consensus 2 ~~~e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ 40 (46)
T 2oo9_A 2 SQLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILR 40 (46)
T ss_dssp CHHHHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHH
Confidence 457889999999999999999999999999999987664
No 92
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=96.31 E-value=0.0069 Score=37.45 Aligned_cols=40 Identities=25% Similarity=0.325 Sum_probs=35.4
Q ss_pred CcchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487 159 NPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF 198 (199)
Q Consensus 159 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~ 198 (199)
.+..+..|.+|.+|||+.++++.||....-|++.|+--|+
T Consensus 4 ~~p~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLl 43 (56)
T 2juj_A 4 SPQLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILR 43 (56)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred CCCChHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHH
Confidence 3456889999999999999999999999999999986654
No 93
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.79 E-value=0.03 Score=40.45 Aligned_cols=67 Identities=12% Similarity=0.200 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccc
Q psy17487 6 AQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLT 77 (199)
Q Consensus 6 ~~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 77 (199)
..+...|+..|..- .+..+.+ ..+....+.+.|....+..-..-.+.+.|.||++||..||.+.+.+
T Consensus 12 ~e~q~~EleaL~sI---y~d~~~~--~~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 12 GEEQRNELEALESI---YPDSFTV--LSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp HHHHHHHHHHHHHH---CSSSEEE--CCSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred HHHHHHHHHHHHHH---ccCceEE--ccCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 56677899888652 2333333 2223355666665222222233478899999999999999987654
No 94
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=95.77 E-value=0.014 Score=42.13 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=36.5
Q ss_pred CcchHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487 159 NPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF 198 (199)
Q Consensus 159 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~ 198 (199)
.+.-...+..+++|||....|+.||...|.++++|+|.|+
T Consensus 5 ~~~e~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~ 44 (118)
T 4ae4_A 5 SPSERQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLF 44 (118)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 4556788999999999999999999999999999999987
No 95
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=95.25 E-value=0.12 Score=40.13 Aligned_cols=85 Identities=18% Similarity=0.348 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhcCCCCCcceEEEecCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccccCCccC
Q psy17487 7 QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISS 86 (199)
Q Consensus 7 ~RL~~E~~~l~~~~~~~~~~i~v~~~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 86 (199)
.+|.+|+.++-=+ .+.-.++++....+.+... .|....++|.++.+||.+||.+...-|+ |.
T Consensus 4 ~~li~Ei~~iGW~--------~l~~id~~~~~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~--- 65 (186)
T 3zqs_A 4 SSLIEEIGTLGWD--------KLVYADTCFSTIKLKAEDA-----SGREHLITLKLKAKYPAESPDYFVDFPV--PF--- 65 (186)
T ss_dssp CSHHHHHHHHCGG--------GEEEECTTSSEEEEEEECT-----TSCEEEEEEECCTTTTTSCCEEECCCSS--CC---
T ss_pred HHHHHHHHHhCCc--------eeeeecCCccEEEEEEEeC-----CCCeEEEEEEECCCCCCCCCeeEEcCCC--Cc---
Confidence 4678888888221 1223356788999888843 3678999999999999999988766543 11
Q ss_pred CCCeeeccCchhhhhhcccHHHHHHHHHHHHhc
Q psy17487 87 VTGAICLDILKDQWAAAMTLRTVLLSLQALMAA 119 (199)
Q Consensus 87 ~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~ 119 (199)
. -.|+|..++.+++.+.+..+.+
T Consensus 66 -----~-----~~w~~~ssL~~v~~qF~~~Le~ 88 (186)
T 3zqs_A 66 -----C-----ASWTPQSSLISIYSQFLAAIES 88 (186)
T ss_dssp -----C-----CCCCTTCCHHHHHHHHHHHHHH
T ss_pred -----c-----cccCCCccHHHHHHHHHHHHHH
Confidence 0 2588888999998887777664
No 96
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=95.19 E-value=0.092 Score=37.80 Aligned_cols=69 Identities=13% Similarity=0.116 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhcCCCCCcceEEEecC--CCcceeeEEEeCCCCCCC--CCcEEEEEEEeCCCCCCCCCccccccc
Q psy17487 7 QRIKREFKEVIKSEEVAKCAIKLELID--DNYTELKGEIAGPPDTPY--EGGNFVLEIKVPETYPFNPPKVKFLTK 78 (199)
Q Consensus 7 ~RL~~E~~~l~~~~~~~~~~i~v~~~~--dn~~~w~~~i~Gp~~tpy--~gg~f~~~i~fp~~YP~~pP~v~f~t~ 78 (199)
.+...|+..|.-- .+..+.+.... .....+.+.|..+.+..- ..-.+.+.|.||++||..+|.|...+.
T Consensus 11 e~~~~EleaL~SI---Y~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~ 83 (128)
T 2day_A 11 WVLPSEVEVLESI---YLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP 83 (128)
T ss_dssp CHHHHHHHHHHHH---STTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred HHHHHHHHHHHHH---CCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcC
Confidence 3567888888652 33344433221 123445555542222111 124788999999999999999987763
No 97
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.07 E-value=0.039 Score=34.03 Aligned_cols=39 Identities=26% Similarity=0.124 Sum_probs=33.7
Q ss_pred cchHHHHHHHHhcCCChHHHHHHHhhcCC-chHHHHHhhh
Q psy17487 160 PDFDSKIQRLTDMGVMSHDARVALSTYNW-ELERATEAIF 198 (199)
Q Consensus 160 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~e~~~ 198 (199)
+.-.+.++.|++|||+.+.|..||+..|- .+++|+|-|+
T Consensus 7 ~vn~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~ 46 (54)
T 2cos_A 7 GVNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYIS 46 (54)
T ss_dssp SCCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHH
Confidence 44567789999999999999999999987 6899988774
No 98
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=94.39 E-value=0.21 Score=36.35 Aligned_cols=68 Identities=9% Similarity=0.112 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcCCCCCcceEEEecC------CCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccc
Q psy17487 6 AQRIKREFKEVIKSEEVAKCAIKLELID------DNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLT 77 (199)
Q Consensus 6 ~~RL~~E~~~l~~~~~~~~~~i~v~~~~------dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 77 (199)
..+-..|+..|.- ..+..+.+.... +....+.+.|.+..+ .-..-.+.+.|.+|++||..||.|.+.+
T Consensus 12 ~e~q~~EleaL~S---IY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 85 (138)
T 2yz0_A 12 YEIQCNELEAIRS---IYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKN 85 (138)
T ss_dssp HHHHHHHHHHHHT---TSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred HHHHHHHHHHHHH---HChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEec
Confidence 3456677877754 122233221110 124566777763222 1123478899999999999999998765
No 99
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=94.31 E-value=0.052 Score=32.39 Aligned_cols=37 Identities=22% Similarity=0.412 Sum_probs=31.3
Q ss_pred chHHHHHHHHhc-CCCh-HHHHHHHhhcCCchHHHHHhh
Q psy17487 161 DFDSKIQRLTDM-GVMS-HDARVALSTYNWELERATEAI 197 (199)
Q Consensus 161 ~~~~~~~~~~~~-g~~~-~~~~~~~~~~~~~~~~~~e~~ 197 (199)
+-+.++.++++. |.+. ..|+.-|..++||++.|+...
T Consensus 4 d~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f 42 (45)
T 3e21_A 4 DREMILADFQACTGIENIDEAITLLEQNNWDLVAAINGV 42 (45)
T ss_dssp CHHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC
T ss_pred cHHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 346778888888 8886 999999999999999998654
No 100
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.90 E-value=0.24 Score=35.59 Aligned_cols=67 Identities=10% Similarity=0.070 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhcCCCCCc--ceEEEe-cCCCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCcccccc
Q psy17487 7 QRIKREFKEVIKSEEVAKC--AIKLEL-IDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLT 77 (199)
Q Consensus 7 ~RL~~E~~~l~~~~~~~~~--~i~v~~-~~dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 77 (199)
.+...|+..|.-- .+. .+.+.. ...+...+.+.|.. .+..-..-.+.+.|.+|++||..||.+.+.+
T Consensus 10 e~q~~EleaL~SI---y~d~~e~~~~~~~~~~~~~f~i~l~~-~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 79 (128)
T 2ebk_A 10 EPVQEELSVLAAI---FCRPHEWEVLSRSETDGTVFRIHTKA-EGFMDADIPLELVFHLPVNYPSCLPGISINS 79 (128)
T ss_dssp HHHHHHHHHHHHH---HCCTTTCCCSEECSSSCEEEEEEEEC-CTTTTCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred HHHHHHHHHHHHH---cCCCCceEEecCCCCCCCeEEEEecC-CCCCCCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence 3456788777541 111 222211 11224577777763 2211112478999999999999999987653
No 101
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=91.10 E-value=0.32 Score=31.16 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=30.3
Q ss_pred HHHHHHHhc-CCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487 164 SKIQRLTDM-GVMSHDARVALSTYNWELERATEAIF 198 (199)
Q Consensus 164 ~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~e~~~ 198 (199)
..|+.|.++ |..-.+|..||...+||++.|++.|.
T Consensus 11 ~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr 46 (64)
T 2cp9_A 11 ELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLH 46 (64)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 456677666 88999999999999999999999875
No 102
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=90.87 E-value=0.68 Score=34.53 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=20.6
Q ss_pred EEEEEEEeCCCCCCCCCcccccc
Q psy17487 55 NFVLEIKVPETYPFNPPKVKFLT 77 (199)
Q Consensus 55 ~f~~~i~fp~~YP~~pP~v~f~t 77 (199)
.+.++|.+|.+||..+|.|...+
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~ 98 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRS 98 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEEC
T ss_pred eEEEEEEcCCCCCCCCCcEEEEe
Confidence 79999999999999999997654
No 103
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=90.85 E-value=0.4 Score=28.05 Aligned_cols=36 Identities=19% Similarity=0.476 Sum_probs=28.9
Q ss_pred HHHHHHHHhc-CCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487 163 DSKIQRLTDM-GVMSHDARVALSTYNWELERATEAIF 198 (199)
Q Consensus 163 ~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~e~~~ 198 (199)
+..+.++++. |.+...|+.-|...+|+++.|+...+
T Consensus 6 ~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff 42 (46)
T 1v92_A 6 QDALREFVAVTGAEEDRARFFLESAGWDLQIALASFY 42 (46)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3456666665 78899999999999999999996543
No 104
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=89.60 E-value=0.17 Score=36.79 Aligned_cols=68 Identities=19% Similarity=0.186 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhcCCCCCcceEEEecCC-----CcceeeEEEeCCCC-C-CCCCcEEEEEEEeCCCCCCCCCcccccc
Q psy17487 6 AQRIKREFKEVIKSEEVAKCAIKLELIDD-----NYTELKGEIAGPPD-T-PYEGGNFVLEIKVPETYPFNPPKVKFLT 77 (199)
Q Consensus 6 ~~RL~~E~~~l~~~~~~~~~~i~v~~~~d-----n~~~w~~~i~Gp~~-t-py~gg~f~~~i~fp~~YP~~pP~v~f~t 77 (199)
..+...|+..|.-- .+..+.+..... ......+.|. +.+ . .-..-.+.+.|.||++||..||.|.+..
T Consensus 12 ~e~q~~EleaL~SI---Y~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 86 (137)
T 1ukx_A 12 SQRQDHELQALEAI---YGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKN 86 (137)
T ss_dssp HHHHHHHHHHHHHH---TSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEE
T ss_pred HHHHHHHHHHHHHH---CcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEec
Confidence 45667888888652 233333321111 1344555554 221 1 0012468999999999999999998753
No 105
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=88.75 E-value=0.3 Score=36.24 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.4
Q ss_pred EEEEEEEeCCCCCCCCCcccccc
Q psy17487 55 NFVLEIKVPETYPFNPPKVKFLT 77 (199)
Q Consensus 55 ~f~~~i~fp~~YP~~pP~v~f~t 77 (199)
.+.+.|.+|.+||..||.+....
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~ 96 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRS 96 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEEC
T ss_pred eEEEEEECCCCCCCCCCeEEEEc
Confidence 68899999999999999997664
No 106
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.60 E-value=0.69 Score=29.73 Aligned_cols=39 Identities=23% Similarity=0.451 Sum_probs=31.3
Q ss_pred cchHHHHHHHHhc-C-CChHHHHHHHhhcCCchHHHHHhhh
Q psy17487 160 PDFDSKIQRLTDM-G-VMSHDARVALSTYNWELERATEAIF 198 (199)
Q Consensus 160 ~~~~~~~~~~~~~-g-~~~~~~~~~~~~~~~~~~~~~e~~~ 198 (199)
.+-+.++.+++.. | -+...|+..|...+|+++.|+...|
T Consensus 16 ~~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff 56 (67)
T 2dam_A 16 QEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRL 56 (67)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3445677777776 6 6888999999999999999996543
No 107
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=87.89 E-value=1.2 Score=27.79 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=34.3
Q ss_pred chHHHHHHHHhc--CCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487 161 DFDSKIQRLTDM--GVMSHDARVALSTYNWELERATEAIF 198 (199)
Q Consensus 161 ~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~e~~~ 198 (199)
..+..+..|.+| +++...+..+|..+++++++|+..||
T Consensus 8 ~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL 47 (59)
T 1wgl_A 8 CSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLL 47 (59)
T ss_dssp SCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 357888899999 88999999999999999999999987
No 108
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.69 E-value=1.3 Score=28.46 Aligned_cols=40 Identities=8% Similarity=0.199 Sum_probs=36.1
Q ss_pred CcchHHHHHHHHhc--CCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487 159 NPDFDSKIQRLTDM--GVMSHDARVALSTYNWELERATEAIF 198 (199)
Q Consensus 159 ~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~e~~~ 198 (199)
..+++..++.|.+| .++...+..+|..+++++++|++.||
T Consensus 15 ~~~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL 56 (67)
T 2dhy_A 15 RLEFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLL 56 (67)
T ss_dssp CCCSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45689999999999 88888888999999999999999987
No 109
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=87.65 E-value=1.1 Score=28.40 Aligned_cols=38 Identities=29% Similarity=0.398 Sum_probs=32.2
Q ss_pred chHHHHHHHHhc-CCChHHHHHHHhhcCCchHHHH---Hhhh
Q psy17487 161 DFDSKIQRLTDM-GVMSHDARVALSTYNWELERAT---EAIF 198 (199)
Q Consensus 161 ~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~---e~~~ 198 (199)
+++.++.++++. |-+..-++-.|...+||+.+|+ |+|+
T Consensus 16 dmdavls~fvrstgaepgLaRDlleGKnWDl~AAL~D~eqLr 57 (73)
T 2l2d_A 16 DMDAVLSDFVRSTGAEPGLARDLLEGKNWDLTAALSDYEQLR 57 (73)
T ss_dssp CHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcchhHHhhccCCccHhHHhhhHHHHH
Confidence 567788888776 8999999999999999999998 6553
No 110
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.02 E-value=1 Score=28.32 Aligned_cols=39 Identities=23% Similarity=0.300 Sum_probs=31.6
Q ss_pred cchHHHHHHHHhc-CCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487 160 PDFDSKIQRLTDM-GVMSHDARVALSTYNWELERATEAIF 198 (199)
Q Consensus 160 ~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~e~~~ 198 (199)
+..+..|.+++.. |-+...|+..|...+|+++.|+...|
T Consensus 13 ~~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff 52 (62)
T 2dal_A 13 SALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFL 52 (62)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3446677777776 88899999999999999999996543
No 111
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.75 E-value=2.4 Score=27.05 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=28.7
Q ss_pred HHHHHHHhc-CCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487 164 SKIQRLTDM-GVMSHDARVALSTYNWELERATEAIF 198 (199)
Q Consensus 164 ~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~e~~~ 198 (199)
..+.+++.. |-+...|+..|...+|+++.|+...+
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff 54 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFF 54 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 456666666 88999999999999999999996544
No 112
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=80.67 E-value=9.6 Score=28.61 Aligned_cols=62 Identities=13% Similarity=0.132 Sum_probs=42.0
Q ss_pred hhHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHhcCC-ChHHHHHHHhhcCCchHHHHHhh
Q psy17487 126 QDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGV-MSHDARVALSTYNWELERATEAI 197 (199)
Q Consensus 126 ~n~eaa~~~~~d~~~f~~~ak~~~~~~a~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~e~~ 197 (199)
.-.||.+.+....-.-.+-++++.+. -.+|++++.+.|| +.+.+.-||..++.|++.|+-+|
T Consensus 76 s~~EAr~Aw~~~~Gd~~~Av~~ci~~----------R~~K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eL 138 (162)
T 4dbg_B 76 SCQEARRAWLDRHGNLDEAVEECVRT----------RRRKVQELQSLGFGPEEGSLQALFQHGGDVSRALTEL 138 (162)
T ss_dssp CHHHHHHHHHHTTTCHHHHHHHHHHH----------HHHHHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHH
T ss_pred cHHHHHHHHHHccCChHHHHHHHHHH----------HHHHHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHH
Confidence 33666666654333333444444433 4678899999984 56667799999999999998554
No 113
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=79.06 E-value=4.4 Score=24.29 Aligned_cols=37 Identities=24% Similarity=0.336 Sum_probs=32.8
Q ss_pred hHHHHHHHHhc--CCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487 162 FDSKIQRLTDM--GVMSHDARVALSTYNWELERATEAIF 198 (199)
Q Consensus 162 ~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~e~~~ 198 (199)
.+..++.|.+| ..+...++-+|...++++++|+.-||
T Consensus 4 ~e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL 42 (49)
T 1otr_A 4 HESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLL 42 (49)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 46778888898 88999999999999999999998876
No 114
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=70.26 E-value=6.5 Score=23.83 Aligned_cols=41 Identities=20% Similarity=0.383 Sum_probs=33.7
Q ss_pred CCCcchHHHHHHHHhcCCChHHH--HHHHhhcCCchHHHHHhh
Q psy17487 157 SKNPDFDSKIQRLTDMGVMSHDA--RVALSTYNWELERATEAI 197 (199)
Q Consensus 157 ~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~e~~ 197 (199)
..++.....+..+.+|||+.+-. +..|...+.|+.+|++.|
T Consensus 5 ~~D~rl~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~l 47 (52)
T 1q02_A 5 EADPRLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTI 47 (52)
T ss_dssp TSCHHHHHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHH
T ss_pred CcChHHHHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHh
Confidence 34666778888999999998887 478888999999999865
No 115
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=64.73 E-value=5.6 Score=37.66 Aligned_cols=38 Identities=32% Similarity=0.384 Sum_probs=34.6
Q ss_pred hHHHHHHHHhcCCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 162 FDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 162 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
-...+..+.+|||+...++.||...+.++++|++.+|+
T Consensus 720 ~~e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs 757 (854)
T 3ihp_A 720 PEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFS 757 (854)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhc
Confidence 36778999999999999999999999999999998873
No 116
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.75 E-value=18 Score=22.37 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=34.6
Q ss_pred CCcchHHHHHHHHhc--CCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487 158 KNPDFDSKIQRLTDM--GVMSHDARVALSTYNWELERATEAIF 198 (199)
Q Consensus 158 ~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~e~~~ 198 (199)
...+.++.++.+.++ ++.....+-.|...| ++++++|.+|
T Consensus 9 ~~~q~~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienIL 50 (58)
T 2ejs_A 9 SNSQLNAMAHQIQEMFPQVPYHLVLQDLQLTR-SVEITTDNIL 50 (58)
T ss_dssp CCCHHHHHHHHHHHHCCSSCHHHHHHHHHHHC-SHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHH
Confidence 356778888888888 888999999999999 9999999887
No 117
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=61.65 E-value=6 Score=24.22 Aligned_cols=39 Identities=8% Similarity=0.096 Sum_probs=28.1
Q ss_pred chHHHHHHHHhc--CCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 161 DFDSKIQRLTDM--GVMSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 161 ~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
+.+..++.|.+| .++.+-....+...+++.++|+.+||.
T Consensus 11 e~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 11 ERKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 456778888888 888888889999999999999988874
No 118
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.65 E-value=27 Score=21.80 Aligned_cols=41 Identities=10% Similarity=0.112 Sum_probs=35.1
Q ss_pred CCcchHHHHHHHHhc--CCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 158 KNPDFDSKIQRLTDM--GVMSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 158 ~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
...+.++.++.+.++ ++.....+-.|...| .+++++|.+|.
T Consensus 9 ~~~ql~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILe 51 (61)
T 2ekf_A 9 PDVQLATLAQRVKEVLPHVPLGVIQRDLAKTG-CVDLTITNLLE 51 (61)
T ss_dssp CCCCHHHHHHHHHHHCSSSCHHHHHHHHHTSC-CHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHc
Confidence 356788888888888 888888899999998 99999999873
No 119
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=58.99 E-value=22 Score=21.90 Aligned_cols=34 Identities=18% Similarity=0.359 Sum_probs=27.3
Q ss_pred hHHHHHHHHhc-CCChHHHHHHHhhcCCchHHHHH
Q psy17487 162 FDSKIQRLTDM-GVMSHDARVALSTYNWELERATE 195 (199)
Q Consensus 162 ~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~e 195 (199)
-...+..+..+ |....=+...|...+||.+.|+.
T Consensus 7 q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~ 41 (59)
T 1oai_A 7 QQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQ 41 (59)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHH
Confidence 34556666655 88889999999999999999984
No 120
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=47.72 E-value=31 Score=21.13 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=26.2
Q ss_pred HHHHHHHHhc-CCChHHHHHHHhhcCCchHHHHH
Q psy17487 163 DSKIQRLTDM-GVMSHDARVALSTYNWELERATE 195 (199)
Q Consensus 163 ~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~e 195 (199)
...|..+..+ |....=+...|...+||.+.|..
T Consensus 7 ~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~ 40 (57)
T 2jp7_A 7 LELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIK 40 (57)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHH
Confidence 3455555555 88888899999999999999984
No 121
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=40.60 E-value=41 Score=23.13 Aligned_cols=32 Identities=25% Similarity=0.277 Sum_probs=25.6
Q ss_pred HHHHHhc-CCChHHHHHHHhhcCCchHHHHHhh
Q psy17487 166 IQRLTDM-GVMSHDARVALSTYNWELERATEAI 197 (199)
Q Consensus 166 ~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~e~~ 197 (199)
|+-+.++ |.+...|+.||..+++|+=.|.-+|
T Consensus 69 i~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 69 IELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 4433333 9999999999999999999887665
No 122
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=40.34 E-value=36 Score=23.56 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=26.6
Q ss_pred HHHHHh-cCCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487 166 IQRLTD-MGVMSHDARVALSTYNWELERATEAIF 198 (199)
Q Consensus 166 ~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~e~~~ 198 (199)
++++.+ ...+-..|+.||-+.+.++++|+.-|+
T Consensus 17 i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL~ 50 (111)
T 3k6g_A 17 IRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLA 50 (111)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHccccHHHHHHHHh
Confidence 334433 488999999999999999999997775
No 123
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=27.76 E-value=1.1e+02 Score=18.79 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=27.7
Q ss_pred hHHHHHHHHhc--CCChHHHHHHHhhcCCchHHHHHhhhC
Q psy17487 162 FDSKIQRLTDM--GVMSHDARVALSTYNWELERATEAIFT 199 (199)
Q Consensus 162 ~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (199)
.+..++....+ .+...+.+-.|... .++++++|.+|.
T Consensus 17 l~~Mve~V~~mFPqv~~~~I~~DL~rT-gSVe~TienILe 55 (58)
T 4g3o_A 17 LNAMAHQIQEMFPQVPYHLVLQDLQLT-RSVEITTDNILE 55 (58)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHH-CCHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHh-CCHHHHHHHHHc
Confidence 45555555555 77888888888877 799999998873
No 124
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=25.39 E-value=1e+02 Score=23.26 Aligned_cols=45 Identities=16% Similarity=0.119 Sum_probs=32.2
Q ss_pred CCcceeeEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487 34 DNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPFNPPKVKFLTKIW 80 (199)
Q Consensus 34 dn~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 80 (199)
+.-..|.+.+.|+.+.-...-+=++.+.+.++||. |.-.+..+-|
T Consensus 30 ~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~n--p~Rvv~~PPF 74 (175)
T 3rls_A 30 EHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPN--PVRSIEAPPF 74 (175)
T ss_dssp TCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSS--CEEEECSSSE
T ss_pred CCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCC--CcEEEeCCCC
Confidence 46679999999987654444456889999999985 6555555433
No 125
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=21.86 E-value=1.6e+02 Score=18.74 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=32.7
Q ss_pred CCCcchHHHHHHHHhc--CCChHHHHHHHhhcCCchHHHHHhhh
Q psy17487 157 SKNPDFDSKIQRLTDM--GVMSHDARVALSTYNWELERATEAIF 198 (199)
Q Consensus 157 ~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~e~~~ 198 (199)
....+.++.|..+.+. .+..--+...|..++.++|.++..||
T Consensus 8 ~~~~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LL 51 (71)
T 2di0_A 8 MCGVELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNIL 51 (71)
T ss_dssp CSSHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3456677777777776 67777788889999999999988886
No 126
>3u3c_B Paxillin LD2 peptide; 4-helix bundle, focal adhesion, tyrosine kinase, transferase-signaling protein complex; 3.70A {Homo sapiens}
Probab=21.75 E-value=69 Score=15.84 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhc
Q psy17487 5 AAQRIKREFKEVIKS 19 (199)
Q Consensus 5 a~~RL~~E~~~l~~~ 19 (199)
...||.-|+...+.+
T Consensus 6 eldrlllelnavqhn 20 (26)
T 3u3c_B 6 ELDRLLLELNAVQHN 20 (26)
T ss_pred HHHHHHHHHhhhccC
Confidence 357999999999876
No 127
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=21.73 E-value=1.3e+02 Score=21.83 Aligned_cols=44 Identities=7% Similarity=-0.049 Sum_probs=31.7
Q ss_pred Ccceee--EEEeCCCCCCCC-CcEEEEEEEeCCCCCCCCCccccccccc
Q psy17487 35 NYTELK--GEIAGPPDTPYE-GGNFVLEIKVPETYPFNPPKVKFLTKIW 80 (199)
Q Consensus 35 n~~~w~--~~i~Gp~~tpy~-gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 80 (199)
-+..|. +.+.|+.+.... .-+=++...+.++|+. |...+..+-|
T Consensus 31 ~~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~n--p~r~v~~pPF 77 (140)
T 3qrl_A 31 PVRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFAN--PNRTFTDPPF 77 (140)
T ss_dssp CCEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSSS--CEEEECSTTC
T ss_pred cccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCCC--CeEEEcCCCc
Confidence 446998 889998887654 3455788889999884 7666665533
No 128
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=21.30 E-value=49 Score=16.39 Aligned_cols=17 Identities=29% Similarity=0.659 Sum_probs=10.0
Q ss_pred CCCCCccccccccccCC
Q psy17487 67 PFNPPKVKFLTKIWHPN 83 (199)
Q Consensus 67 P~~pP~v~f~t~i~HPn 83 (199)
|..-|.-.|...-|||-
T Consensus 4 pmtlpenyfserpyhpp 20 (26)
T 2jrw_A 4 PMTLPENYFSERPYHPP 20 (26)
T ss_dssp CCCCSSSSCCSSSCCSC
T ss_pred ccccchhhcccCCCCCC
Confidence 44455555666667763
Done!