RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17487
(199 letters)
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure,
ATP-binding, isopeptide BO ligase, nucleotide-binding,
UBL conjugation pathway; 1.80A {Homo sapiens} PDB:
3k9p_A 1yla_A 2o25_A
Length = 201
Score = 293 bits (752), Expect = e-102
Identities = 144/199 (72%), Positives = 170/199 (85%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
MANIA QRIKREFKEV+KSEE +K IK++L+D+N+TEL+GEIAGPPDTPYEGG + LEI
Sbjct: 2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 61
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
K+PETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAA
Sbjct: 62 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 121
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
EPDDPQDAVVA QYK+NPEMF TAR W +VYAG P +P++ KI+ L MG +
Sbjct: 122 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI 181
Query: 181 VALSTYNWELERATEAIFT 199
VALS+ +W++E ATE + +
Sbjct: 182 VALSSKSWDVETATELLLS 200
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 289 bits (740), Expect = e-100
Identities = 143/199 (71%), Positives = 169/199 (84%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
MANIA QRIKREFKEV+KSEE +K IK++L+D+N+TEL+GEIAGPPDTPYEGG + LEI
Sbjct: 54 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 113
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
K+PETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAA
Sbjct: 114 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 173
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
EPDDPQDAVVA QYK+NPEMF TAR W +VYAG P +P++ KI+ L G +
Sbjct: 174 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAAGFDRNAVI 233
Query: 181 VALSTYNWELERATEAIFT 199
VALS+ +W++E ATE + +
Sbjct: 234 VALSSKSWDVETATELLLS 252
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC,
ligase; 1.90A {Plasmodium yoelii}
Length = 216
Score = 266 bits (681), Expect = 1e-91
Identities = 92/198 (46%), Positives = 125/198 (63%), Gaps = 4/198 (2%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
+ R+++E K++ I + D N+ E G I GP TPYEGG+F L I
Sbjct: 20 QGSKELLRLQKELKDIENENV---QEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAI 76
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
+P YP+NPPK+KF+TKIWHPNISS TGAICLD+LK++W+ A+T+RT LLS+QAL++
Sbjct: 77 TIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDP 136
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
+PDDPQDA VAK YKEN +F TA WT +A GP + P + I+++T+MG A+
Sbjct: 137 QPDDPQDAEVAKMYKENHALFVKTASVWTKTFATGPKEEPR-EVIIKKITEMGFSEDQAK 195
Query: 181 VALSTYNWELERATEAIF 198
AL NW A +
Sbjct: 196 NALIKANWNETLALNTLL 213
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating
enzyme, protein degradatio structural proteomics in
europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB:
2bf8_A
Length = 159
Score = 244 bits (624), Expect = 1e-83
Identities = 128/155 (82%), Positives = 143/155 (92%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
MANIA QRIKREFKEV+KSEE +K IK++L+D+N+TEL+GEIAGPPDTPYEGG + LEI
Sbjct: 5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 64
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
K+PETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAA
Sbjct: 65 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 124
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGG 155
EPDDPQDAVVA QYK+NPEMF TAR W +VYAG
Sbjct: 125 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 159
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent
degradation, ligase; NMR {Saccharomyces cerevisiae}
SCOP: a.5.2.1 d.20.1.1
Length = 215
Score = 233 bits (597), Expect = 5e-79
Identities = 79/204 (38%), Positives = 111/204 (54%), Gaps = 13/204 (6%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
A+RI +E + +K + A ++ + + + LKG GPP TPYEGG FV++I+VP
Sbjct: 3 RAKRIMKEIQA-VKDDPAAHITLEF-VSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPM 60
Query: 65 TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
YPF PPK++F TK++HPNISSVTGAICLDIL++ W+ +TL++ L+SLQAL+ + EP+D
Sbjct: 61 EYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPND 120
Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDF-----------DSKIQRLTDMG 173
PQDA VA+ Y + E F TA WT +YA S I G
Sbjct: 121 PQDAEVAQHYLRDRESFNKTAALWTRLYASETSNGQKGNVEESDLYGIDHDLIDEFESQG 180
Query: 174 VMSHDARVALSTYNWELERATEAI 197
L + +
Sbjct: 181 FEKDKIVEVLRRLGVKSLDPNDNN 204
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721,
structural genomics, structural genomics consortium,
SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Length = 193
Score = 221 bits (564), Expect = 3e-74
Identities = 73/159 (45%), Positives = 101/159 (63%), Gaps = 10/159 (6%)
Query: 5 AAQRIKREFKEVIKSEEVAKCA----------IKLELIDDNYTELKGEIAGPPDTPYEGG 54
R+ +E ++ + + + +++ + +G IAGP TPYEGG
Sbjct: 33 EQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGG 92
Query: 55 NFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQ 114
+F L+I +P YP+NPPK+KF+TKIWHPNISS TGAICLDILK +W+ A+T+RT LLS+Q
Sbjct: 93 HFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQ 152
Query: 115 ALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
A++A P DPQDA VAK EN +F TA+ WT +A
Sbjct: 153 AMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFA 191
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL
structural genomics consortium, SGC, ligase; HET: PG4;
2.38A {Plasmodium falciparum}
Length = 152
Score = 217 bits (556), Expect = 2e-73
Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 4/149 (2%)
Query: 6 AQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPET 65
+ R+ + K LEL + + + GP T YEGG + + + +P+
Sbjct: 1 GTSLTRKQCDFTKLIM---AGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDD 57
Query: 66 YPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVL-LSLQALMAAAEPDD 124
YPF P + F+ K+ HPN+ +G++CLD++ W +L V + L L+ P D
Sbjct: 58 YPFASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSD 117
Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYA 153
P ++ A ++ ++ + + +YA
Sbjct: 118 PLNSDAASLLMKDKNIYEEKVKEYVKLYA 146
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces
cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Length = 149
Score = 214 bits (547), Expect = 3e-72
Identities = 76/149 (51%), Positives = 105/149 (70%), Gaps = 2/149 (1%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
A+RI +E + +K + A ++ + + + LKG GPP TPYEGG FV++I+VP
Sbjct: 2 RAKRIMKEIQA-VKDDPAAHITLEF-VSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPM 59
Query: 65 TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
YPF PPK++F TK++HPNISSVTGAICLDILK+ W+ +TL++ L+SLQAL+ + EP+D
Sbjct: 60 EYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPND 119
Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYA 153
PQDA VA+ Y + E F TA WT +YA
Sbjct: 120 PQDAEVAQHYLRDRESFNKTAALWTRLYA 148
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas
conjugation pathway, structural genomics, structural
genomi consortium; 1.85A {Plasmodium falciparum} PDB:
3e95_A
Length = 149
Score = 214 bits (547), Expect = 4e-72
Identities = 68/149 (45%), Positives = 93/149 (62%), Gaps = 4/149 (2%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
+RI +E + + I + +NY I GP TPYEGG + LE+ +PE
Sbjct: 2 IPRRITKETQNLANEPP---PGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPE 58
Query: 65 TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
YP PPKV+FLTKI+HPNI G ICLDILKD+W+ A+ +RTVLLS+QAL+++ EPDD
Sbjct: 59 QYPMEPPKVRFLTKIYHPNIDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDD 117
Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYA 153
P D+ VA+ +K++ AR W +YA
Sbjct: 118 PLDSKVAEHFKQDKNDAEHVARQWNKIYA 146
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A
2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Length = 155
Score = 212 bits (543), Expect = 2e-71
Identities = 64/154 (41%), Positives = 91/154 (59%), Gaps = 4/154 (2%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
+RI +E ++++ I E DDN + I GP +PYE G F LE+ +P+
Sbjct: 6 LPKRIIKETEKLVSDPV---PGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 62
Query: 65 TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
YP PKV+FLTKI+HPNI G ICLD+LK W+ A+ +RTVLLS+QAL+A+ P+D
Sbjct: 63 DYPMEAPKVRFLTKIYHPNIDR-LGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPND 121
Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSK 158
P VA+ + +N + AR WT +YA +
Sbjct: 122 PLANDVAEDWIKNEQGAKAKAREWTKLYAKKKPE 155
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation
pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Length = 194
Score = 214 bits (546), Expect = 2e-71
Identities = 62/153 (40%), Positives = 83/153 (54%), Gaps = 4/153 (2%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
+ + +A+RI++E ++ DN E + I GPP + YEGG F L+I
Sbjct: 45 LLSTSAKRIQKELADITLDPP---PNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDI 101
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
YPF PPKV F T+I+H NI+S G ICLDILKD W+ A+T+ VLLS+ +L+
Sbjct: 102 TFTPEYPFKPPKVTFRTRIYHCNINS-QGVICLDILKDNWSPALTISKVLLSICSLLTDC 160
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
P DP +A QY N AR WT YA
Sbjct: 161 NPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 193
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway,
structural genomics, protein structure initiative; 1.10A
{Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A
2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B
3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D
4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Length = 150
Score = 212 bits (542), Expect = 2e-71
Identities = 64/152 (42%), Positives = 97/152 (63%), Gaps = 4/152 (2%)
Query: 2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
+++A +RI++E ++ + + A+C+ + D+ + I GPP++PY+GG F L I
Sbjct: 2 SHMALKRIQKELQD-LGRDPPAQCSA--GPVGDDLFHWQATIMGPPESPYQGGVFFLTIH 58
Query: 62 VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAE 121
P YPF PPKV F T+I+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+
Sbjct: 59 FPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPN 117
Query: 122 PDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
PDDP +A+ YK + E + AR WT YA
Sbjct: 118 PDDPLVPEIARIYKTDRERYNQLAREWTQKYA 149
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo
sapiens} SCOP: d.20.1.1
Length = 158
Score = 212 bits (541), Expect = 3e-71
Identities = 49/153 (32%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
+ N+ I+ +KEV IK+ +++ T+L+ I GP TPY GG F +++
Sbjct: 7 VENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKL 66
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
+ + +P +PPK FLTKI+HPN+ + G IC+++LK W A + +R VLL+++ L+
Sbjct: 67 LLGKDFPASPPKGYFLTKIFHPNVGA-NGEICVNVLKRDWTAELGIRHVLLTIKCLLIHP 125
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
P+ + + EN E + AR T ++
Sbjct: 126 NPESALNEEAGRLLLENYEEYAARARLLTEIHG 158
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural
genomics consortium, ubiquit ubiquitin-conjugating
enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP:
d.20.1.1
Length = 166
Score = 212 bits (541), Expect = 4e-71
Identities = 66/153 (43%), Positives = 86/153 (56%), Gaps = 4/153 (2%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
A +RI +E ++ K + D+ + I GP D+PY GG F L I
Sbjct: 18 YFQGALKRINKELNDLSKDPP---TNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNI 74
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
P YPF PPKV F TKI+HPNI+S GAICLDILKDQW+ A+T+ VLLS+ +L+
Sbjct: 75 HFPSDYPFKPPKVNFTTKIYHPNINS-QGAICLDILKDQWSPALTISKVLLSISSLLTDP 133
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
PDDP +A YK + + TAR W+ YA
Sbjct: 134 NPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA 166
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein
complex, E3 ligase, ubiquitiny TPR, heat-shock protein;
2.9A {Homo sapiens} SCOP: d.20.1.1
Length = 154
Score = 211 bits (540), Expect = 5e-71
Identities = 70/152 (46%), Positives = 94/152 (61%), Gaps = 4/152 (2%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
+RI +E + ++ IK E + N IAGP D+P+EGG F LE+ +PE
Sbjct: 6 LPRRIIKETQRLLAEPV---PGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE 62
Query: 65 TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
YP PKV+F+TKI+HPN+ G ICLDILKD+W+ A+ +RTVLLS+QAL++A PDD
Sbjct: 63 EYPMAAPKVRFMTKIYHPNVDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDD 121
Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYAGGP 156
P VA+Q+K N TAR WT +YA
Sbjct: 122 PLANDVAEQWKTNEAQAIETARAWTRLYAMNN 153
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL
conjugation pathway; HET: CME; 1.94A {Homo sapiens}
SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Length = 165
Score = 212 bits (541), Expect = 5e-71
Identities = 64/153 (41%), Positives = 93/153 (60%), Gaps = 4/153 (2%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
++A +RI +E + + + A+C+ + D+ + I GP D+PY+GG F L I
Sbjct: 16 RGSMALKRIHKELND-LARDPPAQCSA--GPVGDDMFHWQATIMGPNDSPYQGGVFFLTI 72
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
P YPF PPKV F T+I+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+
Sbjct: 73 HFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDP 131
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
PDDP +A+ YK + E + AR WT YA
Sbjct: 132 NPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 164
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural
genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo
sapiens} SCOP: d.20.1.1
Length = 169
Score = 210 bits (536), Expect = 3e-70
Identities = 63/164 (38%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
A R+KRE + I D +L+ +I G +TPYE G F LE+ +PE
Sbjct: 5 RASRLKRELHMLATEPP---PGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPE 61
Query: 65 TYPFNPPKVKFLTKIWHPNISSVTGAICLDIL----KDQWAAAMTLRTVLLSLQALMAAA 120
YPF PP+++FLT I+HPNI S G ICLD+L K W ++ + TVL S+Q LM+
Sbjct: 62 RYPFEPPQIRFLTPIYHPNIDS-AGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEP 120
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDS 164
PDDP A ++ ++K N F AR WT +A K + +
Sbjct: 121 NPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKADEEEM 164
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI,
protein structure initiative ubiquitin conjugating
enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Length = 171
Score = 207 bits (528), Expect = 5e-69
Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 5/157 (3%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
+ +R + ++ + + D E E GP TPYE G ++L +++P
Sbjct: 10 NLRSNRRREMDYMRLCN-STRKV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPS 65
Query: 65 TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVL-LSLQALMAAAEPD 123
YPF P + F +I HPN+ +G++CLD++ W L + + L L+ P
Sbjct: 66 DYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPS 125
Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNP 160
DP + A + F R + +A
Sbjct: 126 DPLNVQAAHLLHADRVGFDALLREHVSTHATPQKALE 162
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural
genomics, structural genomics consortium; 2.10A {Homo
sapiens}
Length = 179
Score = 206 bits (526), Expect = 1e-68
Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 8/158 (5%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
+R+ + ++I+S+ I E + GP TPYEGG + + + +P+
Sbjct: 26 GKRRMDTDVIKLIESKHEV-------TILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPD 78
Query: 65 TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLS-LQALMAAAEPD 123
YPF P + F+ KI+HPNI +G +CLD++ W A L + S L L+A P
Sbjct: 79 KYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPI 138
Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPD 161
DP + A Y PE + + + YA +
Sbjct: 139 DPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEEALKEQ 176
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein
complex, ubiquitin conjugating ENZY complex, peroxisomal
protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A
2y9o_A
Length = 172
Score = 199 bits (509), Expect = 3e-66
Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 12/165 (7%)
Query: 1 MANIAAQRIKREFKEVIKSEE--------VAKCAIKLELI-DDNYTELKGEIAGPPDTPY 51
MA+ RI +E+K ++K+ L I + + ++ + I+GP DTPY
Sbjct: 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62
Query: 52 EGGNFVLEIKVPETYPFNPPKVKFL-TKIWHPNISSVTGAICLDILK-DQWAAAMTLRTV 109
E F + I+VP +YP NPPK+ F+ I H N+ S TG ICL+ILK ++W L
Sbjct: 63 ENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHC 122
Query: 110 LLSLQALMAAAEPDDPQDAVVAKQYKEN-PEMFTLTARHWTNVYA 153
+ ++ L+ D P D + + + +++
Sbjct: 123 VHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYFLAERE 167
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2
M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Length = 160
Score = 193 bits (493), Expect = 6e-64
Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 9/163 (5%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
MA+ A RI+++ E+ + C I D+ K I P + Y+ G FV
Sbjct: 3 MASAAQLRIQKDINELNLPKT---CDISFSD-PDDLLNFKLVI-CPDEGFYKSGKFVFSF 57
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
KV + YP +PPKVK T ++HPNI G +CL+IL++ W +T+ +++ LQ L
Sbjct: 58 KVGQGYPHDPPKVKCETMVYHPNIDL-EGNVCLNILREDWKPVLTINSIIYGLQYLFLEP 116
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFD 163
P+DP + A+ + N +F + GG + F+
Sbjct: 117 NPEDPLNKEAAEVLQNNRRLFEQNVQRSM---RGGYIGSTYFE 156
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure,
elongated shape, E3 ubiquitin ligase, E2 ubiquitin
conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1
PDB: 1fbv_C* 3sy2_C 3sqv_C
Length = 154
Score = 189 bits (481), Expect = 3e-62
Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 7/154 (4%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
MA A++R+ +E +E I+ + + + N +G I P + PY+ G F +EI
Sbjct: 1 MA--ASRRLMKELEE-IRKCGMKNFRNIQ-VDEANLLTWQGLI-VPDNPPYDKGAFRIEI 55
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAA 119
P YPF PPK+ F TKI+HPNI G +CL ++ + W A V+ SL AL+
Sbjct: 56 NFPAEYPFKPPKITFKTKIYHPNIDE-KGQVCLPVISAENWKPATKTDQVIQSLIALVND 114
Query: 120 AEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
+P+ P A +A++Y ++ + F A +T Y
Sbjct: 115 PQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYG 148
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1;
inhibition, hydrolase-ligase complex; 3.30A {Homo
sapiens} PDB: 4ddi_A
Length = 399
Score = 197 bits (501), Expect = 4e-62
Identities = 71/199 (35%), Positives = 104/199 (52%), Gaps = 8/199 (4%)
Query: 2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
+A +RI +E + + + A+C+ + D+ + I GP D+PY+GG F L I
Sbjct: 1 GAMALKRIHKELND-LARDPPAQCSA--GPVGDDMFHWQATIMGPNDSPYQGGVFFLTIH 57
Query: 62 VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAE 121
P YPF PPKV F T+I+HPNI+S G+I LDIL+ QW+ A+T+ VLLS+ +L+
Sbjct: 58 FPTDYPFKPPKVAFTTRIYHPNINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPN 116
Query: 122 PDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDF----DSKIQRLTDMGVMSH 177
PDDP +A+ YK + E + AR WT YA G S + +IQ+ +
Sbjct: 117 PDDPLVPEIARIYKTDREKYNRIAREWTQKYAMGGSAYDEAIMAQQDRIQQEIAVQNPLV 176
Query: 178 DARVALSTYNWELERATEA 196
R+ LS E
Sbjct: 177 SERLELSVLYKEYAEDDNI 195
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin
carrier protein, thioester ligase; 2.00A {Spisula
solidissima} SCOP: d.20.1.1
Length = 156
Score = 189 bits (481), Expect = 4e-62
Identities = 48/149 (32%), Positives = 74/149 (49%), Gaps = 5/149 (3%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
++R+++E + ++ S + I DN + + GP DT YE + L ++ P
Sbjct: 10 VSKRLQQELRTLLMSGD---PGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPS 66
Query: 65 TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
YP+ PP VKF T WHPN+ +G ICLDILK+ W A+ +RT+LLSLQ+L+
Sbjct: 67 DYPYKPPVVKFTTPCWHPNVDQ-SGNICLDILKENWTASYDVRTILLSLQSLLGEPNNAS 125
Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYA 153
P +A A + N +
Sbjct: 126 PLNAQAADMWS-NQTEYKKVLHEKYKTAQ 153
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens}
SCOP: d.20.1.1
Length = 179
Score = 189 bits (481), Expect = 1e-61
Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 5/153 (3%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
+R+++E ++ S + I DN + G I G T YE + L +
Sbjct: 27 ARGPVGKRLQQELMTLMMSGD---KGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSL 83
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
+ P YP+N P VKFLT +HPN+ + G I LDILK++W+A +RT+LLS+Q+L+
Sbjct: 84 EFPSGYPYNAPTVKFLTPCYHPNVDT-QGNISLDILKEKWSALYDVRTILLSIQSLLGEP 142
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
D P + A+ +K NP F + +
Sbjct: 143 NIDSPLNTHAAELWK-NPTAFKKYLQETYSKQV 174
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics
consortium, SGC, ubiquitin- conjugating enzyme; 2.18A
{Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 188 bits (480), Expect = 1e-61
Identities = 38/151 (25%), Positives = 75/151 (49%), Gaps = 5/151 (3%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
M A + R+F ++ ++ I + + ++ E + EI G ++ ++G F L I
Sbjct: 20 MHGRAYLLLHRDFCDLKENNY---KGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTI 76
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILK--DQWAAAMTLRTVLLSLQALMA 118
Y + PP VKF+T +HPN+ TG C+D L ++W TL ++LL+LQ +++
Sbjct: 77 HFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLS 136
Query: 119 AAEPDDPQDAVVAKQYKENPEMFTLTARHWT 149
++P + A+ ++ ++ R +
Sbjct: 137 NPVLENPVNLEAARILVKDESLYRTILRLFN 167
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A
{Saccharomyces cerevisiae} PDB: 3tdi_C
Length = 190
Score = 189 bits (481), Expect = 1e-61
Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 7/164 (4%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKL--ELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKV 62
A R+KR+ + + + D + + I P + Y G+ +
Sbjct: 30 ARIRLKRDLDS-LDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDF 88
Query: 63 PETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEP 122
E YP PPKV L KI+HPNI G +CL+IL++ W+ A+ L++++ L L P
Sbjct: 89 NEVYPIEPPKVVCLKKIFHPNIDL-KGNVCLNILREDWSPALDLQSIITGLLFLFLEPNP 147
Query: 123 DDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKI 166
+DP + AK E + F R + + ++ +D+ +
Sbjct: 148 NDPLNKDAAKLLCEGEKEFAEAVRLTMSGGS---IEHVKYDNIV 188
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle,
nucleotide-binding, UBL CON pathway; 2.50A {Homo
sapiens} PDB: 2edi_A
Length = 167
Score = 188 bits (479), Expect = 1e-61
Identities = 50/157 (31%), Positives = 73/157 (46%), Gaps = 11/157 (7%)
Query: 4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
+ + + +E E+ + C K+ D N P + Y+GG F E +VP
Sbjct: 14 VRDKLLVKEVAELEAN---LPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVP 70
Query: 64 ETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQ------WAAAMTLRTVLLSLQALM 117
+ Y PPKVK LTKIWHPNI+ TG ICL +L++ WA TL+ V+ L +L
Sbjct: 71 DAYNMVPPKVKCLTKIWHPNITE-TGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLF 129
Query: 118 AAA-EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
DDP + A+ + + E F + YA
Sbjct: 130 TDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYA 166
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular
complex, ubiquitin, ATP, conformational change,
thioester, switch, adenylation, protein turnover,
ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Length = 180
Score = 187 bits (477), Expect = 3e-61
Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 9/163 (5%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
A+ A RI+++ E+ + C I D+ K I P + Y+ G FV
Sbjct: 23 KASAAQLRIQKDINELNLPKT---CDISFSD-PDDLLNFKLVI-CPDEGFYKSGKFVFSF 77
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
KV + YP +PPKVK T ++HPNI G + L+IL++ W +T+ +++ LQ L
Sbjct: 78 KVGQGYPHDPPKVKCETMVYHPNIDL-EGNVALNILREDWKPVLTINSIIYGLQYLFLEP 136
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFD 163
P+DP + A+ + N +F + GG + F+
Sbjct: 137 NPEDPLNKEAAEVLQNNRRLFEQNVQRSM---RGGYIGSTYFE 176
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens}
SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Length = 155
Score = 182 bits (463), Expect = 2e-59
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 5/153 (3%)
Query: 2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
+++A+ R+ +E ++ ++ + D N + P PY F L I
Sbjct: 2 SHMASMRVVKELED-LQKKPPPYLRNLS-SDDANVLVWHALL-LPDQPPYHLKAFNLRIS 58
Query: 62 VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDIL-KDQWAAAMTLRTVLLSLQALMAAA 120
P YPF PP +KF TKI+HPN+ G ICL I+ + W VL +L L+
Sbjct: 59 FPPEYPFKPPMIKFTTKIYHPNVDE-NGQICLPIISSENWKPCTKTCQVLEALNVLVNRP 117
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
+P +A +NPE+F A +T +
Sbjct: 118 NIREPLRMDLADLLTQNPELFRKNAEEFTLRFG 150
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Length = 138
Score = 180 bits (459), Expect = 5e-59
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 3/137 (2%)
Query: 1 MANIAAQ-RIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVL 58
M+ + R+ E ++ K C+ L DD T+ G I GPP + +E + L
Sbjct: 2 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSL 61
Query: 59 EIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD-QWAAAMTLRTVLLSLQALM 117
I YP +PPKV F++KI P ++ TG + D W A T+ T+LL L+ M
Sbjct: 62 SIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEM 121
Query: 118 AAAEPDDPQDAVVAKQY 134
A + + +
Sbjct: 122 ATPANKKLRQPKEGETF 138
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase;
2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A
2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Length = 152
Score = 180 bits (458), Expect = 1e-58
Identities = 49/149 (32%), Positives = 85/149 (57%), Gaps = 4/149 (2%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
M+ A +R+ R+FK ++ + A + + D+N I GP DTP++GG F L +
Sbjct: 1 MSTPARKRLMRDFKR-LQQDPPAGISGAPQ--DNNIMLWNAVIFGPDDTPWDGGTFKLSL 57
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
+ E YP PP V+F+++++HPNI + G+ICLDIL++QW+ + +L S+Q+L+
Sbjct: 58 QFSEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDP 116
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWT 149
P+ P ++ A+ Y E+ + R
Sbjct: 117 NPNSPANSEAARMYSESKREYNRRVRDVV 145
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 178 bits (453), Expect = 9e-58
Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 7/158 (4%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDD---NYTELKGEIAGPPDTPYEGGNFV 57
M+++ QR++ E K+ + + K D + + + I G T + GG +
Sbjct: 1 MSSLCLQRLQEERKK-WRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYP 59
Query: 58 LEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQA 115
+ ++ P YP PPKVKF +HPN+ +G ICL IL + W A+TL+ ++L +Q
Sbjct: 60 ITVEYPNEYPSKPPKVKFPAGFYHPNVYP-SGTICLSILNEDQDWRPAITLKQIVLGVQD 118
Query: 116 LMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
L+ + P+ P + + N + Y+
Sbjct: 119 LLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYS 156
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation;
2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 169
Score = 178 bits (453), Expect = 1e-57
Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 4/161 (2%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
M+ A +R+ R+FK +K + + DN I GP DTPYE G F L +
Sbjct: 1 MSTPARRRLMRDFKR-MKEDAPPGVSASPL--PDNVMVWNAMIIGPADTPYEDGTFRLLL 57
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
+ E YP PP VKFL++++HPN+ + G ICLDIL+++W + ++L S+Q+L
Sbjct: 58 EFDEEYPNKPPHVKFLSEMFHPNVYA-NGEICLDILQNRWTPTYDVASILTSIQSLFNDP 116
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPD 161
P P + A +K++ + + + D
Sbjct: 117 NPASPANVEAATLFKDHKSQYVKRVKETVEKSWEDDMDDDD 157
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small
ubiquitin like modifer, SMT3, ligase; 1.30A {Homo
sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A
1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A*
1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Length = 161
Score = 170 bits (434), Expect = 7e-55
Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 7/158 (4%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDD---NYTELKGEIAGPPDTPYEGGNFV 57
M+ IA R+ +E K + + D N + I G TP+EGG F
Sbjct: 4 MSGIALSRLAQERKA-WRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 62
Query: 58 LEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQA 115
L + + YP +PPK KF ++HPN+ +G +CL IL++ W A+T++ +LL +Q
Sbjct: 63 LRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQE 121
Query: 116 LMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
L+ P A Y +N + R +A
Sbjct: 122 LLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics,
PSI, protein structure initiative; 2.63A {Trypanosoma
cruzi}
Length = 167
Score = 169 bits (431), Expect = 2e-54
Identities = 33/160 (20%), Positives = 62/160 (38%), Gaps = 15/160 (9%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCA---------IKLELIDDNYTELKGEIAGPPDTPY 51
M NI+ +RI ++ K +++ + A + D ++ P D+ Y
Sbjct: 5 MKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVY 64
Query: 52 --EGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTV 109
G + L + + YP PP V+F+T ++ P ++ G IC ++ D W V
Sbjct: 65 GGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTG-EGGICDRMVNDFWTPDQHASDV 123
Query: 110 L---LSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTAR 146
+ L + DD + ++ P+ F R
Sbjct: 124 IKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVR 163
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing,
nuclear protein, UBL conjugation pathway,ubiquitin,
ligase, structural genomics; 1.69A {Homo sapiens} SCOP:
d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Length = 160
Score = 168 bits (427), Expect = 8e-54
Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 5/139 (3%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLE 59
+ R+ E +E K + LE +D T G I GPP T YE + L+
Sbjct: 22 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLK 81
Query: 60 IKVPETYPFNPPKVKFLTKIWHPNISSVTGAI---CLDILKDQWAAAMTLRTVLLSLQAL 116
I+ YP PP V+F+TKI ++S G + + +L +W + +++ VL L+ L
Sbjct: 82 IECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRL 140
Query: 117 MAAAEPDDPQDAVVAKQYK 135
M + E + Y
Sbjct: 141 MMSKENMKLPQPPEGQCYS 159
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein
interaction, protein ligase complex; HET: DNA; 1.90A
{Schizosaccharomyces pombe}
Length = 163
Score = 168 bits (427), Expect = 9e-54
Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 7/158 (4%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCA---IKLELIDDNYTELKGEIAGPPDTPYEGGNFV 57
+++ R++ E K+ + + K + K I G P T +EGG +
Sbjct: 7 HSSLCKTRLQEERKQ-WRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYK 65
Query: 58 LEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQA 115
L + PE YP PPK +F ++HPN+ +G +CL IL ++ W A+T++ +LL +Q
Sbjct: 66 LTMAFPEEYPTRPPKCRFTPPLFHPNVYP-SGTVCLSILNEEEGWKPAITIKQILLGIQD 124
Query: 116 LMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
L+ P +K++ + R A
Sbjct: 125 LLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENA 162
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating
enzyme variant, UBC13, HUBC13, polyubiquitination,
ligase, signaling protein; NMR {Homo sapiens}
Length = 170
Score = 165 bits (420), Expect = 1e-52
Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 5/139 (3%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLE 59
+ R+ E +E K + LE +D T G I GPP T YE + L+
Sbjct: 32 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLK 91
Query: 60 IKVPETYPFNPPKVKFLTKIWHPNISSVTGAI---CLDILKDQWAAAMTLRTVLLSLQAL 116
I+ YP PP V+F+TKI ++S G + + +L +W + +++ VL L+ L
Sbjct: 92 IECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRL 150
Query: 117 MAAAEPDDPQDAVVAKQYK 135
M + E + Y
Sbjct: 151 MMSKENMKLPQPPEGQCYS 169
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase,
UBL conjugation pathway, endo reticulum, membrane,
metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A
2kly_A
Length = 164
Score = 163 bits (414), Expect = 7e-52
Identities = 40/166 (24%), Positives = 78/166 (46%), Gaps = 16/166 (9%)
Query: 2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
A A +R+ E+K+ + + ++N+ E + I GP DT +E G F +
Sbjct: 1 AGTALKRLMAEYKQ-LTLNPPEGIVAGP-MNEENFFEWEALIMGPEDTCFEFGVFPAILS 58
Query: 62 VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILK-------------DQWAAAMTLRT 108
P YP +PPK++F +++HPNI G +C+ IL ++W+ ++
Sbjct: 59 FPLDYPLSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVEK 117
Query: 109 VLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAG 154
+LLS+ +++A + + +K ++++ E F A+ G
Sbjct: 118 ILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSLG 163
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase,
yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 165
Score = 159 bits (405), Expect = 2e-50
Identities = 37/162 (22%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
M+ A +R+ +E ++ + + + ++N I GPPDTPY G F ++
Sbjct: 1 MSKTAQKRLLKELQQ-LIKDSPPGIVAGPK-SENNIFIWDCLIQGPPDTPYADGVFNAKL 58
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLR 107
+ P+ YP +PPK+ F I HPNI G +C+ IL +++W+ ++
Sbjct: 59 EFPKDYPLSPPKLTFTPSILHPNIYP-NGEVCISILHSPGDDPNMYELAEERWSPVQSVE 117
Query: 108 TVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWT 149
+LLS+ ++++ + + +++N F +
Sbjct: 118 KILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSI 159
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural
genomics consortium, (SGC), ligase; 1.82A {Homo sapiens}
SCOP: d.20.1.1
Length = 136
Score = 158 bits (402), Expect = 2e-50
Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
MA+ +R+++E ++++ + + + ++ T+ ++ G P T YEG F L
Sbjct: 20 MAS-MQKRLQKELLA-LQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLF 77
Query: 61 KVPETYPFNPPKVKFLTK--IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMA 118
K YPF+ P+V F + HP++ S G ICL IL + W+ A+++++V LS+ ++++
Sbjct: 78 KFSSRYPFDSPQVMFTGENIPVHPHVYS-NGHICLSILTEDWSPALSVQSVCLSIISMLS 136
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme
domain, E2 domain, ligase-ligas inhibitor complex; HET:
U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Length = 183
Score = 159 bits (403), Expect = 6e-50
Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 1 MANIAAQ-RIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLE 59
M + ++Q + E K ++ E V + L + + + I GPP+T YEGG F
Sbjct: 3 MGSPSSQKALLLELKG-LQEEPVEGFRVTLV-DEGDLYNWEVAIFGPPNTYYEGGYFKAR 60
Query: 60 IKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDIL-------------KDQWAAAMTL 106
+K P YP++PP +FLTK+WHPNI TG +C+ IL ++W +
Sbjct: 61 LKFPIDYPYSPPAFRFLTKMWHPNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNV 119
Query: 107 RTVLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
RT+LLS+ +L+ P + + Y++ E R +T++
Sbjct: 120 RTILLSVISLLNEPNTFSPANVDASVMYRKWKESKG-KDREYTDIIR 165
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics,
structural genomics consortium, unknown function; 1.86A
{Plasmodium vivax} SCOP: d.20.1.1
Length = 125
Score = 153 bits (390), Expect = 9e-49
Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 6/125 (4%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
M N A RI++E + C L++ +N + G +T Y + L+I
Sbjct: 4 MGN-ANYRIQKELHN-FLNNPPINC--TLDVHPNNIRIWIVKYVGLENTIYANEVYKLKI 59
Query: 61 KVPETYPFNPPKVKFLTK-IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAA 119
P+ YP PP V FL K H ++ S G ICL +L D + ++++ ++LS+ +++++
Sbjct: 60 IFPDDYPLKPPIVYFLQKPPKHTHVYS-NGDICLSLLGDDYNPSLSISGLVLSIISMLSS 118
Query: 120 AEPDD 124
A+
Sbjct: 119 AKEKK 123
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation
pathway, structural genomics, structural genomics
consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB:
1pzv_A
Length = 172
Score = 155 bits (394), Expect = 9e-49
Identities = 44/152 (28%), Positives = 78/152 (51%), Gaps = 16/152 (10%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
+ + ++R+ E + V + L D++ + I GPPDT YEGG F +
Sbjct: 14 LVPRGSLLLRRQLAE-LNKNPVEGFSAGLI-DDNDLYRWEVLIIGPPDTLYEGGVFKAHL 71
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLR 107
P+ YP PPK+KF+T+IWHPN+ G +C+ IL +++W T+
Sbjct: 72 TFPKDYPLRPPKMKFITEIWHPNVDK-NGDVCISILHEPGEDKYGYEKPEERWLPIHTVE 130
Query: 108 TVLLSLQALMAAAEPDDPQDAVVAKQYKENPE 139
T+++S+ +++A D P + AK+++E+
Sbjct: 131 TIMISVISMLADPNGDSPANVDAAKEWREDRN 162
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown
function, structural genomics consortium, SGC; 2.80A
{Plasmodium falciparum 3D7}
Length = 136
Score = 150 bits (380), Expect = 4e-47
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
Query: 3 NIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKV 62
A RI++E C I + N + G +T Y + ++I
Sbjct: 19 GNANYRIQKELNN-FLKNPPINCTIDVH--PSNIRIWIVQYVGLENTIYANEVYKIKIIF 75
Query: 63 PETYPFNPPKVKFLTK-IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAE 121
P+ YP PP V FL K H ++ S G ICL +L D + ++++ ++LS+ +++++A+
Sbjct: 76 PDNYPLKPPIVYFLQKPPKHTHVYS-NGDICLSVLGDDYNPSLSISGLILSIISMLSSAK 134
Query: 122 P 122
Sbjct: 135 E 135
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G
structural genomics consortium, SGC, ligase; 2.40A
{Plasmodium falciparum} PDB: 3e95_C
Length = 156
Score = 150 bits (380), Expect = 9e-47
Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 8/138 (5%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
+ R+ E + K + LE DD + I G P T +E + L I
Sbjct: 22 RSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCD 81
Query: 64 ETYPFNPPKVKFLTKIWHPNISSVTGAIC---LDILKDQWAAAMTLRTVLLSL-QALMAA 119
+ YP +PP VKF TKI + + G + L ILK+ W T+ T+L+SL Q ++++
Sbjct: 82 DNYPDSPPTVKFDTKIEMSCVDN-CGRVIKNNLHILKN-WNRNYTIETILISLRQEMLSS 139
Query: 120 AEPDDPQDAVVAKQYKEN 137
A PQ + Y N
Sbjct: 140 ANKRLPQPN-EGEVYSNN 156
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating
enzyme, structural genomics consortium ,SGC; 1.80A {Homo
sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Length = 186
Score = 148 bits (376), Expect = 8e-46
Identities = 27/159 (16%), Positives = 68/159 (42%), Gaps = 14/159 (8%)
Query: 2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAG-PPDTPYEGG------ 54
+ A+ R+ +E +++ +S+ +ELI+D+ + ++ PD+P
Sbjct: 25 SVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKE 84
Query: 55 -----NFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQ-WAAAMTLRT 108
+L + +PF+PP V+ + + GA+C+++L Q W++A ++ +
Sbjct: 85 KEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIES 144
Query: 109 VLLSLQALMAAAEPDDPQDAVVAK-QYKENPEMFTLTAR 146
V++ + A + + A + + + +
Sbjct: 145 VIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQ 183
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase,
UBL conjugation pathway, structural genomics consortium
(SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 187
Score = 144 bits (364), Expect = 5e-44
Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 6/156 (3%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
A QR+K+++ IK + V E + N E + GP TPYEGG + ++
Sbjct: 11 APTTATQRLKQDYLR-IKKDPVPYICA--EPLPSNILEWHYVVRGPEMTPYEGGYYHGKL 67
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
P +PF PP + +T ++ D D W A ++ T+L L + M
Sbjct: 68 IFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEK 127
Query: 121 EPDDP---QDAVVAKQYKENPEMFTLTARHWTNVYA 153
P +Q F L + + ++
Sbjct: 128 GPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFP 163
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 127 bits (319), Expect = 7e-36
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 19/167 (11%)
Query: 5 AAQRIKREFKEVIKSEEVAKCA-IKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
A+R+ +E + S ++ + + + ++ +K I GP DTPY G F ++ P
Sbjct: 77 RARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFP 136
Query: 64 ETYPFNPPKVKFLTKIWH-----PNISSVTGAICLDILK-------DQW-AAAMTLRTVL 110
+ YP +PP V T H PN+ + G +CL IL ++W + VL
Sbjct: 137 QDYPSSPPLVNLETTGGHSVRFNPNLYN-DGKVCLSILNTWHGRPEEKWNPQTSSFLQVL 195
Query: 111 LSLQALMAAAEP--DDP--QDAVVAKQYKENPEMFTLTARHWTNVYA 153
+S+Q+L+ AEP ++P + + ++ + R T +A
Sbjct: 196 VSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWA 242
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin
binding, protein transport; 1.40A {Homo sapiens} PDB:
3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A
1kpq_A 1m4p_A 1m4q_A 1s1q_A
Length = 146
Score = 46.1 bits (109), Expect = 6e-07
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 9/103 (8%)
Query: 27 IKLELIDDNYTELKGEIAGPPDTPYEGGNFV--LEIKVPETYPFNPPKVK-FLTKIW--- 80
L+ EL + G PY G + + + + +TYP+NPP T
Sbjct: 41 PVLDSYGTGSRELM-NLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIK 99
Query: 81 -HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEP 122
++ + G I L L + L ++ + + P
Sbjct: 100 TGKHVDA-NGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPP 141
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 3e-04
Identities = 34/175 (19%), Positives = 56/175 (32%), Gaps = 54/175 (30%)
Query: 43 IAGPPDTPYEGGNFVLE-IKVPETY-----PFNPPKVK----FLTKI---WH-PNISSVT 88
++GPP + Y G N L K P PF+ K+K FL + +H + +
Sbjct: 379 VSGPPQSLY-GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP-VASPFHSHLLVPAS 436
Query: 89 GAICLDILKD--QWAAAMTLR-TVLLSLQALMAAAEPDDPQDAVVAKQYKEN------PE 139
I D++K+ + A ++ V D D + +
Sbjct: 437 DLINKDLVKNNVSFNAK-DIQIPVY-------------DTFDGSDLRVLSGSISERIVDC 482
Query: 140 MFTLTARHWTNVYAGGPSKNPDFD----SKIQRLTD-----MGVMSHDARVALST 185
+ L W + DF S + LT GV RV ++
Sbjct: 483 IIRLPV-KWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGV-----RVIVAG 531
Score = 35.8 bits (82), Expect = 0.007
Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 12/105 (11%)
Query: 32 IDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPET-YPFNPPKVK-FLTKIWHPNISSVTG 89
I +NY+ + E D + EI T Y F K T+ P ++ +
Sbjct: 1684 IRENYSAMIFE--TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741
Query: 90 AICLDILKDQWAAAMTLRTVL--LSL---QALMAAAEPDDPQDAV 129
A + LK + + SL AL + A+ + V
Sbjct: 1742 AA-FEDLKSK--GLIPADATFAGHSLGEYAALASLADVMSIESLV 1783
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain,
UBA domain, three helix bundle, structural genomics; NMR
{Arabidopsis thaliana} SCOP: a.5.2.1
Length = 73
Score = 35.2 bits (81), Expect = 0.002
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 156 PSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199
+ S + L G AR AL ++E+AT+ +F
Sbjct: 23 HQTSDIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFN 66
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin
specific protease 5, USP 5, UBA domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 33.9 bits (78), Expect = 0.003
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 153 AGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199
S P + + + MG A AL N LERA + IF+
Sbjct: 1 GSSGSSGPP-EDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFS 46
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol
protease, UBL conjugation pathway, metal-binding,
zinc-finger,structural genomics; 2.80A {Homo sapiens}
Length = 854
Score = 35.6 bits (81), Expect = 0.008
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 153 AGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF 198
+ + +P + + + MG A AL N LERA + IF
Sbjct: 711 STSAAADPPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIF 756
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain,
endocytosis/signaling protein complex; NMR
{Saccharomyces cerevisiae} SCOP: a.5.2.1
Length = 43
Score = 31.1 bits (70), Expect = 0.021
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 166 IQRLTDMGVMSHDARVALSTYNWELERAT 194
++ L+ MG +A AL NW+LE AT
Sbjct: 8 VEELSGMGFTEEEAHNALEKCNWDLEAAT 36
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin
associated domain, UBA domain, ubiquitin proteosome
pathway, DNA binding protein; NMR {Homo sapiens} SCOP:
a.5.2.1
Length = 49
Score = 31.3 bits (71), Expect = 0.024
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 160 PDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199
++++ + + MG AL RA E + T
Sbjct: 6 SEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT 45
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural
genomics, riken structural genomics/proteomics
initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Length = 73
Score = 31.4 bits (70), Expect = 0.034
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 163 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199
+ +IQ+L MG VAL+ + +L A E + +
Sbjct: 30 EEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMS 66
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal
sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE;
1.65A {Homo sapiens} PDB: 4ae4_B*
Length = 118
Score = 31.1 bits (70), Expect = 0.097
Identities = 9/50 (18%), Positives = 20/50 (40%)
Query: 150 NVYAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199
++ K +F + + +MG D + L +N + + A E +
Sbjct: 64 EMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMA 113
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor
and arginine permease...; endosomal sorting, ESCRT-I;
1.45A {Saccharomyces cerevisiae} PDB: 3r42_A 1uzx_A*
Length = 162
Score = 31.5 bits (71), Expect = 0.10
Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 17/99 (17%)
Query: 33 DDNYTELKGEIAGPPDTPYEGG---NFVLEIKVPETYPFNPPKVKFLTKIW--------- 80
D +L I G T +G + + + VP YP PP + + +
Sbjct: 57 SDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSL 116
Query: 81 --HPNISSVTGAICLDILKDQWA-AAMTLRTVLLSLQAL 116
I S G I L IL W AAM L V+ L +L
Sbjct: 117 PIQEYIDS-NGWIALPIL-HAWDPAAMNLIMVVQELMSL 153
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 128
Score = 30.7 bits (69), Expect = 0.15
Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 6/92 (6%)
Query: 12 EFKEVIKSEEVAKCAI---KLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYPF 68
++ E ++E A +I ++ +N + E L+ E YP
Sbjct: 10 DYGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPD 69
Query: 69 NPPKVKFLTKIWHPNISSVTGAICLDILKDQW 100
P + ++ N+ + L +L Q
Sbjct: 70 EAPLYEIFSQ---ENLEDNDVSDILKLLALQA 98
>2k4n_A Protein PF0246; beta-sheet, alpha-helix, mobIle loop, structural
genomics, PSI-2, protein structure initiative; NMR
{Pyrococcus furiosus}
Length = 111
Score = 29.7 bits (66), Expect = 0.22
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 9/56 (16%)
Query: 29 LELIDDNYTELKGEIAGPPDTPYEG---------GNFVLEIKVPETYPFNPPKVKF 75
LE I ++Y EL+ EI P+ YE +V+E ++ E ++PP++K+
Sbjct: 10 LEDIGEDYIELENEIHLKPEVFYEVWKYVGEPELKTYVIEDEIVEPGEYDPPEMKY 65
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.29
Identities = 23/169 (13%), Positives = 47/169 (27%), Gaps = 47/169 (27%)
Query: 55 NFVLEIKVPETYPFNPPKVK-----FLTKIWHPNISSVTGAICLDILKDQWAA----AMT 105
N+ ++ L + N CL +L + A A
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN--------CLLVLLNVQNAKAWNAFN 263
Query: 106 L--RTVLLSLQALMAAAEPDDPQDAVVAKQYK-----ENPEMFT------LTARHWTNVY 152
L + +L + + D + A + T L + + +
Sbjct: 264 LSCKILLTTRFKQVT--------DFLSAATTTHISLDHHSMTLTPDEVKSLLLK-YLDC- 313
Query: 153 AGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTY-NWE---LERATEAI 197
P P + +++ R L+T+ NW+ ++ T I
Sbjct: 314 --RPQDLPREVLTTNPRR-LSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Score = 29.8 bits (66), Expect = 0.61
Identities = 32/200 (16%), Positives = 55/200 (27%), Gaps = 82/200 (41%)
Query: 10 KREFKEVIKS------------------EEVAKCAIKLELIDDNYTELKGEIAGPPDTP- 50
K E +I S EE+ + ++ E++ NY L I P
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE-EVLRINYKFLMSPIKTEQRQPS 106
Query: 51 -----YEGGNFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMT 105
Y L +N +++ K
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK--------------------------- 139
Query: 106 LRTVLLSLQ-----AL--MA-------AAEPDDPQDAVVAKQYKENPEM-FTLTARHWTN 150
LR LL L+ + + A + V YK +M F + W N
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALD--------VCLSYKVQCKMDFKI---FWLN 188
Query: 151 VYAGGPSKNPDFDSKI-QRL 169
+ +P+ ++ Q+L
Sbjct: 189 L---KNCNSPETVLEMLQKL 205
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex,
signaling protein; NMR {Saccharomyces cerevisiae} SCOP:
a.5.2.1
Length = 58
Score = 28.2 bits (63), Expect = 0.35
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 153 AGGPSKNPD--FDSKIQRLTDMGVMSHDARV-ALSTYNWELERATEAIF 198
GG +P+ ++ ++++L DMG D V AL ++ A +++
Sbjct: 6 GGGGILDPEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLL 54
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR
{Homo sapiens}
Length = 126
Score = 29.5 bits (65), Expect = 0.38
Identities = 17/84 (20%), Positives = 26/84 (30%)
Query: 116 LMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVM 175
A + A +V+ N + + +T MG
Sbjct: 32 AEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFGASGLDNQPPEEIVAIITSMGFQ 91
Query: 176 SHDARVALSTYNWELERATEAIFT 199
+ A AL N LERA + IF+
Sbjct: 92 RNQAIQALRATNNNLERALDWIFS 115
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation
pathway, ligase, structural genomics, PSI; 2.20A
{Leishmania major}
Length = 168
Score = 27.6 bits (61), Expect = 1.8
Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 22/107 (20%)
Query: 7 QRIKREFKEVIKSEEVAKCA----IKLELIDDNYTELKGEIAGPPD-TPYEGGNFVLEIK 61
R+K E+ +I E K + LE + T G YE F +
Sbjct: 37 ARLKEEYASLITYVEHNKASDSHWFHLE-SNPQGTRWYGTCWTYYKNEKYE---FEMNFD 92
Query: 62 VPETYPFNPPKVKFLTKIWHPNISSVT------GAICLDI-LKDQWA 101
+P TYP PP++ P + T G IC+ WA
Sbjct: 93 IPVTYPQAPPEIAL------PELEGKTVKMYRGGKICMTTHFFPLWA 133
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 83
Score = 26.3 bits (58), Expect = 2.4
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 157 SKNPDFD-SKIQRLTDMGVMSHDARVALSTYNWELERATEAIF 198
++ D + +++LT+MG + A AL + + +A E +
Sbjct: 23 DEDERVDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLI 65
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL
conjugation pathway, ligase; 1.60A {Homo sapiens} PDB:
2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Length = 172
Score = 26.8 bits (59), Expect = 3.9
Identities = 38/152 (25%), Positives = 58/152 (38%), Gaps = 36/152 (23%)
Query: 7 QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGG----------NF 56
QR+K E++ +I+ E K A D+++ L+ G T + G F
Sbjct: 35 QRLKEEYQSLIRYVENNKNA------DNDWFRLESNKEG---TRWFGKCWYIHDLLKYEF 85
Query: 57 VLEIKVPETYPFNPPKVKFLTKIWHPNISSVT------GAICLDI-LKDQWAAAM----T 105
+E +P TYP P++ P + T G ICL K WA +
Sbjct: 86 DIEFDIPITYPTTAPEIAV------PELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGL 139
Query: 106 LRTVLLSLQALMAAAEPDDPQDAVVAKQYKEN 137
+ L L +A PD Q V+ + K N
Sbjct: 140 AHLMALGLGPWLAVEIPDLIQKGVIQHKEKCN 171
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional
regulator, STRU genomics, PSI, protein structure
initiative; 2.15A {Bacillus cereus atcc 14579} SCOP:
a.4.1.9 a.121.1.1
Length = 183
Score = 26.6 bits (59), Expect = 4.6
Identities = 8/57 (14%), Positives = 20/57 (35%), Gaps = 6/57 (10%)
Query: 97 KDQWAAAMTLRTVLLSLQALMAAAEPDDPQDAV--VAKQY----KENPEMFTLTARH 147
+ + + L AAE +A+ + + Y +++P ++ T
Sbjct: 52 LQDVRKNLGIYGIKKLHNRLEEAAEDKRMDEAIHALGEAYVAFVRKHPGLYEATFLR 108
>3lkm_A MHCK-A, myosin heavy chain kinase A; protein kinase-like fold,
ATP-binding, nucleotide- binding,
serine/threonine-protein kinase; HET: AMP; 1.60A
{Dictyostelium discoideum} PDB: 3lla_A* 3lmi_A* 3lmh_A*
3pdt_A*
Length = 307
Score = 27.0 bits (58), Expect = 5.0
Identities = 6/48 (12%), Positives = 11/48 (22%)
Query: 133 QYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQRLTDMGVMSHDAR 180
H+T + D TD + + D +
Sbjct: 194 GAVLTNRSTPQAFSHFTYELSNKQMIVVDIQGVDDLYTDPQIHTPDGK 241
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.393
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,223,935
Number of extensions: 194005
Number of successful extensions: 545
Number of sequences better than 10.0: 1
Number of HSP's gapped: 427
Number of HSP's successfully gapped: 80
Length of query: 199
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 110
Effective length of database: 4,216,824
Effective search space: 463850640
Effective search space used: 463850640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.1 bits)