RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17487
(199 letters)
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa,
E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 154
Score = 156 bits (394), Expect = 2e-49
Identities = 128/154 (83%), Positives = 143/154 (92%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
MANIA QRIKREFKEV+KSEE +K IK++L+D+N+TEL+GEIAGPPDTPYEGG + LEI
Sbjct: 1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 60
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
K+PETYPFNPPKV+F+TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQAL+AAA
Sbjct: 61 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 120
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYAG 154
EPDDPQDAVVA QYK+NPEMF TAR W +VYAG
Sbjct: 121 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG 154
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721,
E2 domain {Toxoplasma gondii [TaxId: 5811]}
Length = 161
Score = 136 bits (343), Expect = 8e-42
Identities = 73/147 (49%), Positives = 99/147 (67%)
Query: 7 QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
Q+++R + + +++ + +G IAGP TPYEGG+F L+I +P Y
Sbjct: 14 QQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDY 73
Query: 67 PFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQ 126
P+NPPK+KF+TKIWHPNISS TGAICLDILK +W+ A+T+RT LLS+QA++A P DPQ
Sbjct: 74 PYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQ 133
Query: 127 DAVVAKQYKENPEMFTLTARHWTNVYA 153
DA VAK EN +F TA+ WT +A
Sbjct: 134 DAEVAKMMIENHPLFVQTAKLWTETFA 160
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC
{Caenorhabditis elegans, E2 2 [TaxId: 6239]}
Length = 147
Score = 133 bits (335), Expect = 9e-41
Identities = 62/150 (41%), Positives = 91/150 (60%), Gaps = 4/150 (2%)
Query: 4 IAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
+A +RI++E +++ + + D+ + I GPP++PY+GG F L I P
Sbjct: 1 MALKRIQKELQDLGRDPPAQ---CSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFP 57
Query: 64 ETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD 123
YPF PPKV F T+I+HPNI+S G+ICLDIL+ QW+ A+T+ VLLS+ +L+ PD
Sbjct: 58 TDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPD 116
Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
DP +A+ YK + E + AR WT YA
Sbjct: 117 DPLVPEIARIYKTDRERYNQLAREWTQKYA 146
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch8 [TaxId: 9606]}
Length = 148
Score = 129 bits (324), Expect = 4e-39
Identities = 63/149 (42%), Positives = 81/149 (54%), Gaps = 4/149 (2%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
+A+RI++E E+ DN E + I GPP + YEGG F L+I
Sbjct: 3 SAKRIQKELAEITLDPP---PNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSP 59
Query: 65 TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
YPF PPKV F T+I+H NI+S G ICLDILKD W+ A+T+ VLLS+ +L+ P D
Sbjct: 60 DYPFKPPKVTFRTRIYHCNINS-QGVICLDILKDNWSPALTISKVLLSICSLLTDCNPAD 118
Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYA 153
P +A QY N AR WT YA
Sbjct: 119 PLVGSIATQYMTNRAEHDRMARQWTKRYA 147
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}
Length = 149
Score = 123 bits (310), Expect = 6e-37
Identities = 78/150 (52%), Positives = 103/150 (68%), Gaps = 4/150 (2%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
A+RI +E + V I LE + + + LKG GPP TPYEGG FV++I+VP
Sbjct: 2 RAKRIMKEIQAVKDDPA---AHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVP 58
Query: 64 ETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPD 123
YPF PPK++F TK++HPNISSVTGAICLDILK+ W+ +TL++ L+SLQAL+ + EP+
Sbjct: 59 MEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPN 118
Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
DPQDA VA+ Y + E F TA WT +YA
Sbjct: 119 DPQDAEVAQHYLRDRESFNKTAALWTRLYA 148
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Length = 152
Score = 121 bits (304), Expect = 5e-36
Identities = 64/146 (43%), Positives = 89/146 (60%), Gaps = 4/146 (2%)
Query: 8 RIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYP 67
RI +E ++++ I E DDN + I GP +PYE G F LE+ +P+ YP
Sbjct: 7 RIIKETEKLVSDP---VPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYP 63
Query: 68 FNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQD 127
PKV+FLTKI+HPNI G ICLD+LK W+ A+ +RTVLLS+QAL+A+ P+DP
Sbjct: 64 MEAPKVRFLTKIYHPNIDR-LGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLA 122
Query: 128 AVVAKQYKENPEMFTLTARHWTNVYA 153
VA+ + +N + AR WT +YA
Sbjct: 123 NDVAEDWIKNEQGAKAKAREWTKLYA 148
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc13 [TaxId: 9606]}
Length = 149
Score = 119 bits (300), Expect = 2e-35
Identities = 70/146 (47%), Positives = 93/146 (63%), Gaps = 4/146 (2%)
Query: 8 RIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYP 67
RI +E + ++ IK E + N IAGP D+P+EGG F LE+ +PE YP
Sbjct: 6 RIIKETQRLLAEP---VPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYP 62
Query: 68 FNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDPQD 127
PKV+F+TKI+HPN+ G ICLDILKD+W+ A+ +RTVLLS+QAL++A PDDP
Sbjct: 63 MAAPKVRFMTKIYHPNVDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLA 121
Query: 128 AVVAKQYKENPEMFTLTARHWTNVYA 153
VA+Q+K N TAR WT +YA
Sbjct: 122 NDVAEQWKTNEAQAIETARAWTRLYA 147
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:
4932]}
Length = 153
Score = 119 bits (298), Expect = 5e-35
Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 4/149 (2%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
A +R+ R+FK + + + + DN I GP DTPYE G F L ++ E
Sbjct: 4 ARRRLMRDFKRMKEDAP---PGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDE 60
Query: 65 TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
YP PP VKFL++++HPN+ + G ICLDIL+++W + ++L S+Q+L P
Sbjct: 61 EYPNKPPHVKFLSEMFHPNVYA-NGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPAS 119
Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYA 153
P + A +K++ + +
Sbjct: 120 PANVEAATLFKDHKSQYVKRVKETVEKSW 148
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 115 bits (289), Expect = 3e-34
Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
MA+ +R+++E ++++ + + + ++ T+ ++ G P T YEG F L
Sbjct: 1 MAS-MQKRLQKELLA-LQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLF 58
Query: 61 KVPETYPFNPPKVKFLTKIW--HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMA 118
K YPF+ P+V F + HP++ S G ICL IL + W+ A+++++V LS+ ++++
Sbjct: 59 KFSSRYPFDSPQVMFTGENIPVHPHVYS-NGHICLSILTEDWSPALSVQSVCLSIISMLS 117
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode
(Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Length = 161
Score = 116 bits (291), Expect = 6e-34
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 18/159 (11%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVP 63
++ +K++ ++ + L+DD + + + + GPPDT YEGG F + P
Sbjct: 1 SSLLLKKQLADMRRVPV---DGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFP 57
Query: 64 ETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD-------------QWAAAMTLRTVL 110
YP PPK+KF+++IWHPNI G +C+ IL D +W T+ T+L
Sbjct: 58 RDYPQKPPKMKFISEIWHPNIDK-EGNVCISILHDPGDDKWGYERPEERWLPVHTVETIL 116
Query: 111 LSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWT 149
LS+ +++ + P + AK +EN F
Sbjct: 117 LSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCV 155
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 H [TaxId: 9606]}
Length = 152
Score = 115 bits (290), Expect = 8e-34
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
+R+ + ++I+S+ I E + GP TPYEGG + + + +P+
Sbjct: 4 GKRRMDTDVVKLIESKHEV-------TILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPD 56
Query: 65 TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLS-LQALMAAAEPD 123
YPF P + F+ KI+HPNI +G +CLD++ W A L + S L L+A P
Sbjct: 57 KYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPI 116
Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
DP + A Y PE + + + YA
Sbjct: 117 DPLNGDAAAMYLHRPEEYKQKIKEYIQKYA 146
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 115 bits (288), Expect = 1e-33
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
Query: 8 RIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
R+ E +E K + LE +D T G I GPP T YE + L+I+ Y
Sbjct: 9 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 68
Query: 67 PFNPPKVKFLTKIWHPNISSVTGAI---CLDILKDQWAAAMTLRTVLLSLQALMAAAE-P 122
P PP V+F+TKI ++S G + + +L +W + +++ VL L+ LM + E
Sbjct: 69 PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLMMSKENM 127
Query: 123 DDPQDA 128
PQ
Sbjct: 128 KLPQPP 133
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 U [TaxId: 9606]}
Length = 148
Score = 114 bits (287), Expect = 2e-33
Identities = 38/150 (25%), Positives = 75/150 (50%), Gaps = 5/150 (3%)
Query: 1 MANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEI 60
M A + R+F ++ ++ I + + ++ E + EI G ++ ++G F L I
Sbjct: 1 MHGRAYLLLHRDFCDLKENNY---KGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTI 57
Query: 61 KVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILK--DQWAAAMTLRTVLLSLQALMA 118
Y + PP VKF+T +HPN+ TG C+D L ++W TL ++LL+LQ +++
Sbjct: 58 HFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLS 117
Query: 119 AAEPDDPQDAVVAKQYKENPEMFTLTARHW 148
++P + A+ ++ ++ R +
Sbjct: 118 NPVLENPVNLEAARILVKDESLYRTILRLF 147
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 M [TaxId: 9606]}
Length = 157
Score = 115 bits (288), Expect = 2e-33
Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 9/166 (5%)
Query: 2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
A+ A RI+++ E+ + C I D+ K I P + Y+ G FV K
Sbjct: 1 ASAAQLRIQKDINELNLPKT---CDISFSD-PDDLLNFKLVI-CPDEGFYKSGKFVFSFK 55
Query: 62 VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAE 121
V + YP +PPKVK T ++HPNI + G +CL+IL++ W +T+ +++ LQ L
Sbjct: 56 VGQGYPHDPPKVKCETMVYHPNID-LEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPN 114
Query: 122 PDDPQDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQ 167
P+DP + A+ + N +F + GG + F+ ++
Sbjct: 115 PEDPLNKEAAEVLQNNRRLFEQNVQRSMR---GGYIGSTYFERCLK 157
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC
{Human(Homo sapiens), E2 S [TaxId: 9606]}
Length = 151
Score = 113 bits (283), Expect = 7e-33
Identities = 49/150 (32%), Positives = 83/150 (55%), Gaps = 1/150 (0%)
Query: 3 NIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKV 62
N+ I+ +KEV IK+ +++ T+L+ I GP TPY GG F +++ +
Sbjct: 2 NLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLL 61
Query: 63 PETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEP 122
+ +P +PPK FLTKI+HPN+ + G IC+++LK W A + +R VLL+++ L+ P
Sbjct: 62 GKDFPASPPKGYFLTKIFHPNVGA-NGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNP 120
Query: 123 DDPQDAVVAKQYKENPEMFTLTARHWTNVY 152
+ + + EN E + AR T ++
Sbjct: 121 ESALNEEAGRLLLENYEEYAARARLLTEIH 150
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 L6 [TaxId: 9606]}
Length = 150
Score = 112 bits (280), Expect = 2e-32
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 3/149 (2%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
A+ R+ +E +++ K ++ DD + + P PY F L I P
Sbjct: 1 ASMRVVKELEDLQKKPP---PYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPP 57
Query: 65 TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
YPF PP +KF TKI+HPN+ I + W VL +L L+ +
Sbjct: 58 EYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIRE 117
Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYA 153
P +A +NPE+F A +T +
Sbjct: 118 PLRMDLADLLTQNPELFRKNAEEFTLRFG 146
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc9 [TaxId: 9606]}
Length = 156
Score = 112 bits (280), Expect = 2e-32
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 5/154 (3%)
Query: 4 IAAQRIKREFKEVIKSEEVAKCAIKLELID--DNYTELKGEIAGPPDTPYEGGNFVLEIK 61
IA R+ +E K K A+ + D N + I G TP+EGG F L +
Sbjct: 2 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 61
Query: 62 VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALMAA 119
+ YP +PPK KF ++HPN+ + L IL++ W A+T++ +LL +Q L+
Sbjct: 62 FKDDYPSSPPKCKFEPPLFHPNVYPSGT-VSLSILEEDKDWRPAITIKQILLGIQELLNE 120
Query: 120 AEPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
DP A Y +N + R +A
Sbjct: 121 PNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 154
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC
{Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:
6239]}
Length = 149
Score = 111 bits (278), Expect = 4e-32
Identities = 45/145 (31%), Positives = 83/145 (57%), Gaps = 4/145 (2%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
+ +R+ R+FK++ + + +DN + I GP +TP+E G F L ++ E
Sbjct: 4 SRRRLMRDFKKLQEDP---PAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTE 60
Query: 65 TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
YP PP VKF++K++HPN+ + G+ICLDIL+++W+ + +L S+Q+L+ P+
Sbjct: 61 EYPNKPPTVKFISKMFHPNVYA-DGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNS 119
Query: 125 PQDAVVAKQYKENPEMFTLTARHWT 149
P +++ A+ Y+EN + +
Sbjct: 120 PANSLAAQLYQENRREYEKRVQQIV 144
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC
{Leishmania major [TaxId: 5664]}
Length = 158
Score = 110 bits (277), Expect = 7e-32
Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 8/150 (5%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
+ +R + ++ + S D E E GP TPYE G ++L +++P
Sbjct: 1 SNRRREMDYMRLCNSTRKVY-------PSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPS 53
Query: 65 TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRT-VLLSLQALMAAAEPD 123
YPF P + F +I HPN+ +G++CLD++ W L + L L+ P
Sbjct: 54 DYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPS 113
Query: 124 DPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
DP + A + F R + +A
Sbjct: 114 DPLNVQAAHLLHADRVGFDALLREHVSTHA 143
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch10 [TaxId: 9606]}
Length = 146
Score = 109 bits (273), Expect = 2e-31
Identities = 49/149 (32%), Positives = 77/149 (51%), Gaps = 5/149 (3%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
+R+++E ++ S + I DN + G I G T YE + L ++ P
Sbjct: 2 VGKRLQQELMTLMMSGD---KGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPS 58
Query: 65 TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
YP+N P VKFLT +HPN+ + G I LDILK++W+A +RT+LLS+Q+L+ D
Sbjct: 59 GYPYNAPTVKFLTPCYHPNVDT-QGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDS 117
Query: 125 PQDAVVAKQYKENPEMFTLTARHWTNVYA 153
P + A+ +K NP F + +
Sbjct: 118 PLNTHAAELWK-NPTAFKKYLQETYSKQV 145
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch7 [TaxId: 9606]}
Length = 144
Score = 109 bits (272), Expect = 3e-31
Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 3/147 (2%)
Query: 6 AQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPET 65
++R+ +E +E+ K I+++ + N +G I P + PY+ G F +EI P
Sbjct: 1 SRRLMKELEEIRKCGMKNFRNIQVD--EANLLTWQGLI-VPDNPPYDKGAFRIEINFPAE 57
Query: 66 YPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDDP 125
YPF PPK+ F TKI+HPNI I + W A V+ SL AL+ +P+ P
Sbjct: 58 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 117
Query: 126 QDAVVAKQYKENPEMFTLTARHWTNVY 152
A +A++Y ++ + F A +T Y
Sbjct: 118 LRADLAEEYSKDRKKFCKNAEEFTKKY 144
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme,
E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Length = 109
Score = 107 bits (267), Expect = 5e-31
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Query: 8 RIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPETYP 67
RI++E + + L++ +N + G +T Y + L+I P+ YP
Sbjct: 2 RIQKELHNFLNNPP---INCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYP 58
Query: 68 FNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMA 118
PP V FL K G ICL +L D + ++++ ++LS+ ++++
Sbjct: 59 LKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLS 109
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Length = 164
Score = 108 bits (270), Expect = 9e-31
Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 16/161 (9%)
Query: 2 ANIAAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIK 61
+ A +R+ +E +++IK A ++N I GPPDTPY G F +++
Sbjct: 1 SKTAQKRLLKELQQLIKDSPPGIVAGPKS--ENNIFIWDCLIQGPPDTPYADGVFNAKLE 58
Query: 62 VPETYPFNPPKVKFLTKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLRT 108
P+ YP +PPK+ F I HPNI G +C+ IL +++W+ ++
Sbjct: 59 FPKDYPLSPPKLTFTPSILHPNIYP-NGEVCISILHSPGDDPNMYELAEERWSPVQSVEK 117
Query: 109 VLLSLQALMAAAEPDDPQDAVVAKQYKENPEMFTLTARHWT 149
+LLS+ ++++ + + +++N F +
Sbjct: 118 ILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSI 158
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 T [TaxId: 9606]}
Length = 154
Score = 107 bits (268), Expect = 1e-30
Identities = 62/153 (40%), Positives = 85/153 (55%), Gaps = 8/153 (5%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
A R+KRE + I D +L+ +I G +TPYE G F LE+ +PE
Sbjct: 3 RASRLKRELHMLATEPP---PGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPE 59
Query: 65 TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKD----QWAAAMTLRTVLLSLQALMAAA 120
YPF PP+++FLT I+HPNI S G ICLD+LK W ++ + TVL S+Q LM+
Sbjct: 60 RYPFEPPQIRFLTPIYHPNIDS-AGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEP 118
Query: 121 EPDDPQDAVVAKQYKENPEMFTLTARHWTNVYA 153
PDDP A ++ ++K N F AR WT +A
Sbjct: 119 NPDDPLMADISSEFKYNKPAFLKNARQWTEKHA 151
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 106 bits (265), Expect = 2e-30
Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 18/125 (14%)
Query: 8 RIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
++R+ E+ K+ LIDD + + I GPPDT YEGG F + P+ Y
Sbjct: 3 LLRRQLAELNKNPV---EGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDY 59
Query: 67 PFNPPKVKFLTKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLRTVLLSL 113
P PPK+KF+T+IWHPN+ G +C+ IL +++W T+ T+++S+
Sbjct: 60 PLRPPKMKFITEIWHPNVDK-NGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISV 118
Query: 114 QALMA 118
+++A
Sbjct: 119 ISMLA 123
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 J2 [TaxId: 9606]}
Length = 157
Score = 106 bits (266), Expect = 3e-30
Identities = 37/166 (22%), Positives = 64/166 (38%), Gaps = 13/166 (7%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
A QR+K+++ + K I E + N E + GP TPYEGG + ++ P
Sbjct: 2 ATQRLKQDYLRIKKDPV---PYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPR 58
Query: 65 TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
+PF PP + +T ++ D D W A ++ T+L L + M P
Sbjct: 59 EFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTL 118
Query: 125 P---QDAVVAKQYKENPEMFTLTARHWTNVYAGGPSKNPDFDSKIQ 167
+Q F L + + ++ P+ +I+
Sbjct: 119 GSIETSDFTKRQLAVQSLAFNLKDKVFCELF-------PEVVEEIK 157
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}
Length = 136
Score = 103 bits (259), Expect = 2e-29
Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 8 RIKREFKEVIKSEEVAKCAIKLELIDD-NYTELKGEIAGPPDTPYEGGNFVLEIKVPETY 66
R+ E ++ K C+ L DD T+ G I GPP + +E + L I Y
Sbjct: 8 RLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNY 67
Query: 67 PFNPPKVKFLTKIWHPNISSVTGAICLDILK-DQWAAAMTLRTVLLSLQALMAAAEPDDP 125
P +PPKV F++KI P ++ TG + D W A T+ T+LL L+ MA
Sbjct: 68 PDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKL 127
Query: 126 Q 126
+
Sbjct: 128 R 128
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 102 bits (256), Expect = 6e-29
Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 8/122 (6%)
Query: 8 RIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVL--EIKVPET 65
RE VI + K + + +D + + G PY G + + + + +T
Sbjct: 18 LTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDT 77
Query: 66 YPFNPPKVKFLTK-----IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAA 120
YP+NPP ++ + G I L L + L ++ + +
Sbjct: 78 YPYNPPICFVKPTSSMTIKTGKHVDA-NGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDE 136
Query: 121 EP 122
P
Sbjct: 137 PP 138
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam
(Spisula solidissima), E-2C [TaxId: 6584]}
Length = 156
Score = 101 bits (253), Expect = 2e-28
Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 4/135 (2%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGGNFVLEIKVPE 64
++R+++E + ++ S + I DN + + GP DT YE + L ++ P
Sbjct: 10 VSKRLQQELRTLLMSGD---PGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPS 66
Query: 65 TYPFNPPKVKFLTKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALMAAAEPDD 124
YP+ PP VKF T WHPN+ +G ICLDILK+ W A+ +RT+LLSLQ+L+
Sbjct: 67 DYPYKPPVVKFTTPCWHPNVDQ-SGNICLDILKENWTASYDVRTILLSLQSLLGEPNNAS 125
Query: 125 PQDAVVAKQYKENPE 139
P +A A + E
Sbjct: 126 PLNAQAADMWSNQTE 140
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 100 bits (249), Expect = 1e-27
Identities = 27/156 (17%), Positives = 67/156 (42%), Gaps = 14/156 (8%)
Query: 5 AAQRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAG-PPDTPYEGG--------- 54
A+ R+ +E +++ +S+ +ELI+D+ + ++ PD+P
Sbjct: 5 ASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEG 64
Query: 55 --NFVLEIKVPETYPFNPPKVKFLTKIWHPNISSVTGAICLDIL-KDQWAAAMTLRTVLL 111
+L + +PF+PP V+ + + GA+C+++L K W++A ++ +V++
Sbjct: 65 IEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIM 124
Query: 112 SLQALMAAAEPDDPQDAVVAK-QYKENPEMFTLTAR 146
+ A + + A + + + +
Sbjct: 125 QINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQ 160
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 152
Score = 90.4 bits (224), Expect = 7e-24
Identities = 28/131 (21%), Positives = 45/131 (34%), Gaps = 16/131 (12%)
Query: 8 RIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGG---NFVLEIKVPE 64
+ ++ + + ++ D +L I G T +G + + + VP
Sbjct: 23 TTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPS 82
Query: 65 TYPFNPPKVKFLTK-----------IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSL 113
YP PP + + I S G I L IL AAM L V+ L
Sbjct: 83 MYPVKPPFISINLENFDMNTISSSLPIQEYIDS-NGWIALPILHCWDPAAMNLIMVVQEL 141
Query: 114 QALMAAAEPDD 124
+L+ P D
Sbjct: 142 MSLL-HEPPQD 151
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 41
Score = 43.4 bits (103), Expect = 2e-07
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 160 PDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199
++++ + + MG AL RA E + T
Sbjct: 2 SEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT 41
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 63
Score = 37.8 bits (88), Expect = 4e-05
Identities = 7/48 (14%), Positives = 18/48 (37%)
Query: 152 YAGGPSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199
Y+ +P ++ + +MG A+ +E+ + +F
Sbjct: 9 YSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFA 56
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 73
Score = 34.8 bits (80), Expect = 6e-04
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 163 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199
S + L G AR AL ++E+AT+ +F
Sbjct: 30 QSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFN 66
>d3e46a1 a.5.2.1 (A:157-198) Ubiquitin-conjugating enzyme E2-25 kDa,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 33.6 bits (76), Expect = 0.001
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 159 NPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIF 198
+P++ KI+ L G + VALS+ +W++E ATE +
Sbjct: 3 SPEYTKKIENLCAAGFDRNAVIVALSSKSWDVETATELLL 42
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 63
Score = 33.2 bits (76), Expect = 0.002
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 163 DSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199
+ ++ +T+MG +R AL LE A + T
Sbjct: 10 EKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLT 46
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 73
Score = 33.0 bits (75), Expect = 0.004
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 156 PSKNPDFDSKIQRLTDMGVMSHDARVALSTYNWELERATEAIFT 199
+ + +IQ+L MG VAL+ + +L A E + +
Sbjct: 23 QGRVAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMS 66
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C
{Saccharomyces cerevisiae [TaxId: 4932]}
Length = 43
Score = 29.9 bits (67), Expect = 0.020
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 166 IQRLTDMGVMSHDARVALSTYNWELERAT 194
++ L+ MG +A AL NW+LE AT
Sbjct: 8 VEELSGMGFTEEEAHNALEKCNWDLEAAT 36
>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2
(STS-2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 26.2 bits (58), Expect = 0.59
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 164 SKIQRLTDMGVMSHDARVAL-STYNWELERATEAIFT 199
S ++ L MG H A AL +T E A +
Sbjct: 4 SLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHD 40
>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 27.4 bits (61), Expect = 0.75
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 32/112 (28%)
Query: 7 QRIKREFKEVIKSEEVAKCAIKLELIDDNYTELKGEIAGPPDTPYEGG----------NF 56
QR+K E++ +I+ E K A D+++ L+ G T + G F
Sbjct: 28 QRLKEEYQSLIRYVENNKNA------DNDWFRLESNKEG---TRWFGKCWYIHDLLKYEF 78
Query: 57 VLEIKVPETYPFNPPKVKFLTKIWHPNISSVT------GAICLDI-LKDQWA 101
+E +P TYP P++ P + T G ICL K WA
Sbjct: 79 DIEFDIPITYPTTAPEIAV------PELDGKTAKMYRGGKICLTDHFKPLWA 124
>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 46
Score = 23.1 bits (50), Expect = 7.2
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 163 DSKIQRLTDM-GVMSHDARVALSTYNWELERATEAIF 198
++ + G AR L + W+L+ A + +
Sbjct: 6 QDALREFVAVTGAEEDRARFFLESAGWDLQIALASFY 42
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.393
Gapped
Lambda K H
0.267 0.0511 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 774,426
Number of extensions: 35426
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 42
Length of query: 199
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 118
Effective length of database: 1,295,466
Effective search space: 152864988
Effective search space used: 152864988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.5 bits)