Query psy17488
Match_columns 1446
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 29240
Date Fri Aug 16 23:47:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17488.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17488hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ltj_A Alpharep-4; protein eng 68.6 1.7 5.8E-05 37.7 1.4 47 216-262 7-54 (201)
2 1te4_A Conserved protein MTH18 61.7 13 0.00045 31.0 5.5 37 226-262 45-82 (131)
3 3ltj_A Alpharep-4; protein eng 55.2 6.4 0.00022 34.1 2.6 32 224-255 139-170 (201)
4 4db6_A Armadillo repeat protei 51.8 9.7 0.00033 32.8 3.2 29 223-251 54-82 (210)
5 4hxt_A De novo protein OR329; 50.2 5.1 0.00017 34.7 1.1 30 222-251 169-198 (252)
6 3b0b_C CENP-X, centromere prot 48.1 14 0.00049 32.4 3.6 28 249-276 28-55 (81)
7 3ltm_A Alpha-REP4; protein eng 47.9 9 0.00031 33.4 2.4 33 225-257 145-177 (211)
8 4db6_A Armadillo repeat protei 46.5 5.1 0.00017 34.5 0.5 34 218-251 7-40 (210)
9 4db8_A Armadillo-repeat protei 45.6 12 0.00042 32.9 2.9 30 222-251 179-208 (252)
10 1te4_A Conserved protein MTH18 42.8 9.6 0.00033 31.9 1.7 35 225-259 75-110 (131)
11 4dra_E Centromere protein X; D 42.5 19 0.00063 32.1 3.5 29 249-277 32-60 (84)
12 3tpo_A Importin subunit alpha- 41.4 10 0.00036 38.6 2.0 39 223-261 162-202 (529)
13 3tpo_A Importin subunit alpha- 40.6 12 0.0004 38.1 2.3 40 223-262 420-467 (529)
14 3ul1_B Importin subunit alpha- 39.4 12 0.0004 38.2 2.0 39 223-261 143-183 (510)
15 4db8_A Armadillo-repeat protei 38.9 34 0.0011 30.1 4.6 30 223-252 54-83 (252)
16 4hxt_A De novo protein OR329; 37.8 12 0.00041 32.3 1.6 29 223-251 86-114 (252)
17 3ltm_A Alpha-REP4; protein eng 37.2 10 0.00036 33.0 1.1 31 223-253 112-142 (211)
18 3v9r_B MHF2, uncharacterized p 33.9 20 0.00069 32.6 2.4 29 249-277 21-49 (88)
19 1taf_B TFIID TBP associated fa 33.9 43 0.0015 28.8 4.3 42 242-283 14-57 (70)
20 2jdq_A Importin alpha-1 subuni 32.1 37 0.0013 32.0 4.0 29 223-251 276-304 (450)
21 1oyz_A Hypothetical protein YI 32.0 23 0.00077 32.2 2.4 30 224-253 129-158 (280)
22 1oyz_A Hypothetical protein YI 30.6 19 0.00066 32.6 1.8 39 224-262 160-201 (280)
23 1xqr_A HSPBP1 protein; armadil 30.6 14 0.00047 36.6 0.8 31 222-252 208-238 (296)
24 2jdq_A Importin alpha-1 subuni 30.3 31 0.0011 32.5 3.2 37 223-259 318-358 (450)
25 2js3_A Uncharacterized protein 28.8 15 0.00051 33.6 0.6 54 64-124 38-94 (96)
26 3f2k_A Histone-lysine N-methyl 28.5 39 0.0013 31.6 3.5 39 235-273 183-221 (226)
27 2f7t_A MOS1 transposase; RNAse 27.8 38 0.0013 31.2 3.2 39 235-273 184-222 (227)
28 4b8j_A Importin subunit alpha- 27.4 33 0.0011 34.0 2.9 38 223-260 160-199 (528)
29 2oxo_A Integrase; DNA-binding 27.2 87 0.003 23.1 4.6 40 233-272 45-84 (103)
30 4b8j_A Importin subunit alpha- 26.1 29 0.001 34.4 2.3 30 223-252 286-315 (528)
31 3dhn_A NAD-dependent epimerase 25.3 12 0.0004 33.0 -0.7 22 229-250 48-78 (227)
32 2lx0_A Membrane fusion protein 24.1 23 0.00077 27.4 0.8 12 90-101 20-31 (32)
33 1xqr_A HSPBP1 protein; armadil 23.7 29 0.001 34.3 1.8 28 223-250 81-109 (296)
34 2kiw_A INT protein; alpha, str 23.4 1.1E+02 0.0037 23.8 4.7 39 234-272 44-82 (111)
35 1jdh_A Beta-catenin; beta-cate 23.1 59 0.002 31.4 3.7 31 222-252 265-295 (529)
36 3hot_A Transposable element ma 21.7 62 0.0021 30.7 3.5 68 206-273 267-340 (345)
37 3ul1_B Importin subunit alpha- 21.2 45 0.0016 33.9 2.6 28 223-250 401-428 (510)
38 2l9b_A MRNA 3'-END-processing 21.1 1.6E+02 0.0055 27.4 5.9 38 239-276 37-75 (109)
39 2es4_D Lipase chaperone; prote 20.8 69 0.0024 33.4 3.9 44 224-270 63-116 (332)
40 1jdh_A Beta-catenin; beta-cate 20.7 35 0.0012 33.0 1.6 39 223-261 460-499 (529)
No 1
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=68.60 E-value=1.7 Score=37.74 Aligned_cols=47 Identities=26% Similarity=0.316 Sum_probs=37.0
Q ss_pred CCCCCccchhhhhhccccccccchhhHHHHHhccCCH-HHHHHHHHHH
Q psy17488 216 SPPPSPTGLYKLLVPLLRCDTTDVRDAVVHALGNINS-EALKDLMEEL 262 (1446)
Q Consensus 216 spppsptglykllvpllrcdttdvrdavvhalgnins-ealkdlmeel 262 (1446)
..++...+.+..||.+|..+..+||.+.+.+||++.. +++..|++-|
T Consensus 7 ~~~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l 54 (201)
T 3ltj_A 7 HHHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKAL 54 (201)
T ss_dssp CCCCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHT
T ss_pred cccccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Confidence 3456667888899999999999999999999999887 5666655544
No 2
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=61.66 E-value=13 Score=31.03 Aligned_cols=37 Identities=24% Similarity=0.373 Sum_probs=28.3
Q ss_pred hhhhccccccccchhhHHHHHhccCCH-HHHHHHHHHH
Q psy17488 226 KLLVPLLRCDTTDVRDAVVHALGNINS-EALKDLMEEL 262 (1446)
Q Consensus 226 kllvpllrcdttdvrdavvhalgnins-ealkdlmeel 262 (1446)
..|+.+|.-+..+||.+++.|||+|.. +++..|+.-|
T Consensus 45 ~~L~~~L~d~~~~vR~~A~~aL~~~~~~~a~~~L~~~L 82 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGNFQDERAVEPLIKLL 82 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGGCSHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 677888887778899999999999965 4555555444
No 3
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=55.23 E-value=6.4 Score=34.06 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=20.3
Q ss_pred hhhhhhccccccccchhhHHHHHhccCCHHHH
Q psy17488 224 LYKLLVPLLRCDTTDVRDAVVHALGNINSEAL 255 (1446)
Q Consensus 224 lykllvpllrcdttdvrdavvhalgninseal 255 (1446)
....|+.+|.-+...||.+++.|||+|.....
T Consensus 139 ~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 170 (201)
T 3ltj_A 139 AVEPLIKALKDEDGWVRQSAADALGEIGGERV 170 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCSHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCchhH
Confidence 34456666655555677777777777765433
No 4
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=51.76 E-value=9.7 Score=32.76 Aligned_cols=29 Identities=31% Similarity=0.421 Sum_probs=26.0
Q ss_pred chhhhhhccccccccchhhHHHHHhccCC
Q psy17488 223 GLYKLLVPLLRCDTTDVRDAVVHALGNIN 251 (1446)
Q Consensus 223 glykllvpllrcdttdvrdavvhalgnin 251 (1446)
|+...||.||..+..+|+.+++.||+||-
T Consensus 54 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 82 (210)
T 4db6_A 54 GALPALVQLLSSPNEQILQEALWALSNIA 82 (210)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 56778999999999999999999999984
No 5
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=50.18 E-value=5.1 Score=34.68 Aligned_cols=30 Identities=33% Similarity=0.492 Sum_probs=26.5
Q ss_pred cchhhhhhccccccccchhhHHHHHhccCC
Q psy17488 222 TGLYKLLVPLLRCDTTDVRDAVVHALGNIN 251 (1446)
Q Consensus 222 tglykllvpllrcdttdvrdavvhalgnin 251 (1446)
.|+...|+.||..+..+|+.+++.+|+||-
T Consensus 169 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 198 (252)
T 4hxt_A 169 AGGVEVLVKLLTSTDSEVQKEAARALANIA 198 (252)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 367788999999888999999999999985
No 6
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=48.10 E-value=14 Score=32.44 Aligned_cols=28 Identities=36% Similarity=0.545 Sum_probs=25.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhhhhHH
Q psy17488 249 NINSEALKDLMEELSVYIREAVDRKTEN 276 (1446)
Q Consensus 249 ninsealkdlmeelsvyireavdrkten 276 (1446)
.|+.+||+-+.+=|-++|+|||-|-.++
T Consensus 28 rI~~dAl~l~aeyl~iFV~EAv~RA~~~ 55 (81)
T 3b0b_C 28 RVNGDALLLMAELLKVFVREAAARAARQ 55 (81)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999998776
No 7
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=47.92 E-value=9 Score=33.38 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=19.5
Q ss_pred hhhhhccccccccchhhHHHHHhccCCHHHHHH
Q psy17488 225 YKLLVPLLRCDTTDVRDAVVHALGNINSEALKD 257 (1446)
Q Consensus 225 ykllvpllrcdttdvrdavvhalgninsealkd 257 (1446)
...|+.+|.-+...||.+++.|||+|....+.+
T Consensus 145 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~ 177 (211)
T 3ltm_A 145 VEPLIKALKDEDGWVRQSAADALGEIGGERVRA 177 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCchhHHH
Confidence 445555665444567777777777776644333
No 8
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=46.49 E-value=5.1 Score=34.54 Aligned_cols=34 Identities=12% Similarity=0.087 Sum_probs=26.0
Q ss_pred CCCccchhhhhhccccccccchhhHHHHHhccCC
Q psy17488 218 PPSPTGLYKLLVPLLRCDTTDVRDAVVHALGNIN 251 (1446)
Q Consensus 218 ppsptglykllvpllrcdttdvrdavvhalgnin 251 (1446)
-..+.+.+.+|+.||..+..+|+.+.+.+|+||-
T Consensus 7 ~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~ 40 (210)
T 4db6_A 7 HHHHGSELPQMVQQLNSPDQQELQSALRKLSQIA 40 (210)
T ss_dssp ------CHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3455678899999999999999999999999884
No 9
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=45.61 E-value=12 Score=32.88 Aligned_cols=30 Identities=30% Similarity=0.413 Sum_probs=26.1
Q ss_pred cchhhhhhccccccccchhhHHHHHhccCC
Q psy17488 222 TGLYKLLVPLLRCDTTDVRDAVVHALGNIN 251 (1446)
Q Consensus 222 tglykllvpllrcdttdvrdavvhalgnin 251 (1446)
.|+...||.||..+..+|+.+++.+|+||-
T Consensus 179 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 179 AGALPALVQLLSSPNEQILQEALWALSNIA 208 (252)
T ss_dssp TTCHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 356778999999998999999999999993
No 10
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=42.80 E-value=9.6 Score=31.86 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=26.2
Q ss_pred hhhhhccccccccchhhHHHHHhccCCHH-HHHHHH
Q psy17488 225 YKLLVPLLRCDTTDVRDAVVHALGNINSE-ALKDLM 259 (1446)
Q Consensus 225 ykllvpllrcdttdvrdavvhalgninse-alkdlm 259 (1446)
...|+.+|.-+...||.+++.|||+|... ++..|+
T Consensus 75 ~~~L~~~L~d~~~~VR~~A~~aL~~~~~~~a~~~L~ 110 (131)
T 1te4_A 75 VEPLIKLLEDDSGFVRSGAARSLEQIGGERVRAAME 110 (131)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHHHCSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 45677777777788999999999999764 444443
No 11
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=42.50 E-value=19 Score=32.13 Aligned_cols=29 Identities=28% Similarity=0.437 Sum_probs=26.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy17488 249 NINSEALKDLMEELSVYIREAVDRKTENM 277 (1446)
Q Consensus 249 ninsealkdlmeelsvyireavdrktenm 277 (1446)
.|+.+||+-+-+-|-++|+|||-|-.++-
T Consensus 32 kIs~dAl~l~aeyl~iFV~EAv~RA~~~a 60 (84)
T 4dra_E 32 KVSGDALQLMVELLKVFVVEAAVRGVRQA 60 (84)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999987753
No 12
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=41.38 E-value=10 Score=38.55 Aligned_cols=39 Identities=31% Similarity=0.522 Sum_probs=31.4
Q ss_pred chhhhhhccccccccchhhHHHHHhccC--CHHHHHHHHHH
Q psy17488 223 GLYKLLVPLLRCDTTDVRDAVVHALGNI--NSEALKDLMEE 261 (1446)
Q Consensus 223 glykllvpllrcdttdvrdavvhalgni--nsealkdlmee 261 (1446)
|.-.+||-||.+...+|+..++.||||| ++..+++++-+
T Consensus 162 Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~ 202 (529)
T 3tpo_A 162 GAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIK 202 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 4556788999999999999999999999 35666666543
No 13
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=40.62 E-value=12 Score=38.14 Aligned_cols=40 Identities=30% Similarity=0.479 Sum_probs=30.3
Q ss_pred chhhhhhccccccccchhhHHHHHhccCC--------HHHHHHHHHHH
Q psy17488 223 GLYKLLVPLLRCDTTDVRDAVVHALGNIN--------SEALKDLMEEL 262 (1446)
Q Consensus 223 glykllvpllrcdttdvrdavvhalgnin--------sealkdlmeel 262 (1446)
|..+.||.||.|..++|..+++.||.||- .+.+..+|+|.
T Consensus 420 g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ 467 (529)
T 3tpo_A 420 GIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEEC 467 (529)
T ss_dssp TCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred cCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHC
Confidence 56778899999999999999999998872 34455555553
No 14
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=39.41 E-value=12 Score=38.24 Aligned_cols=39 Identities=31% Similarity=0.543 Sum_probs=31.5
Q ss_pred chhhhhhccccccccchhhHHHHHhccC--CHHHHHHHHHH
Q psy17488 223 GLYKLLVPLLRCDTTDVRDAVVHALGNI--NSEALKDLMEE 261 (1446)
Q Consensus 223 glykllvpllrcdttdvrdavvhalgni--nsealkdlmee 261 (1446)
|.-..||-||..+..+|+..++.||||| +++.+++++-+
T Consensus 143 GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~ 183 (510)
T 3ul1_B 143 GAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIK 183 (510)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4567889999999999999999999999 35666666543
No 15
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=38.90 E-value=34 Score=30.07 Aligned_cols=30 Identities=33% Similarity=0.431 Sum_probs=26.5
Q ss_pred chhhhhhccccccccchhhHHHHHhccCCH
Q psy17488 223 GLYKLLVPLLRCDTTDVRDAVVHALGNINS 252 (1446)
Q Consensus 223 glykllvpllrcdttdvrdavvhalgnins 252 (1446)
|+...||.||..+..+|+.+++.+|+||-.
T Consensus 54 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 83 (252)
T 4db8_A 54 GALPALVQLLSSPNEQILQEALWALSNIAS 83 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 567889999999889999999999999864
No 16
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=37.77 E-value=12 Score=32.27 Aligned_cols=29 Identities=34% Similarity=0.502 Sum_probs=23.7
Q ss_pred chhhhhhccccccccchhhHHHHHhccCC
Q psy17488 223 GLYKLLVPLLRCDTTDVRDAVVHALGNIN 251 (1446)
Q Consensus 223 glykllvpllrcdttdvrdavvhalgnin 251 (1446)
|....|+.+|..+..+|+.+++.+|+||-
T Consensus 86 ~~i~~l~~ll~~~~~~v~~~a~~~L~~l~ 114 (252)
T 4hxt_A 86 GGVEVLVKLLTSTDSEVQKEAARALANIA 114 (252)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 45667888888888889999999998876
No 17
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=37.24 E-value=10 Score=32.95 Aligned_cols=31 Identities=32% Similarity=0.306 Sum_probs=25.1
Q ss_pred chhhhhhccccccccchhhHHHHHhccCCHH
Q psy17488 223 GLYKLLVPLLRCDTTDVRDAVVHALGNINSE 253 (1446)
Q Consensus 223 glykllvpllrcdttdvrdavvhalgninse 253 (1446)
.....|+.+|.-+..+||.+++.|||+|...
T Consensus 112 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~ 142 (211)
T 3ltm_A 112 RAVEPLIKALKDEDWFVRIAAAFALGEIGDE 142 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH
Confidence 3557788888777788999999999998754
No 18
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=33.89 E-value=20 Score=32.62 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=24.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhhhhHHH
Q psy17488 249 NINSEALKDLMEELSVYIREAVDRKTENM 277 (1446)
Q Consensus 249 ninsealkdlmeelsvyireavdrktenm 277 (1446)
.|+.+|++-+-+=|-|||+|||-|..||-
T Consensus 21 rIt~da~~lv~kY~diFVrEAv~Rs~e~k 49 (88)
T 3v9r_B 21 KIADEVVPMIQKYLDIFIDEAVLRSLQSH 49 (88)
T ss_dssp EECTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37778888888889999999999998874
No 19
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=33.88 E-value=43 Score=28.76 Aligned_cols=42 Identities=21% Similarity=0.514 Sum_probs=35.5
Q ss_pred HHHHHhc--cCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhh
Q psy17488 242 AVVHALG--NINSEALKDLMEELSVYIREAVDRKTENMRRRRRR 283 (1446)
Q Consensus 242 avvhalg--ninsealkdlmeelsvyireavdrktenmrrrrrr 283 (1446)
.|...+| |++.+|.+.|.+.|..+|++.+..-..-|+--.|.
T Consensus 14 ~iaes~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk 57 (70)
T 1taf_B 14 VIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQ 57 (70)
T ss_dssp HHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3455555 79999999999999999999999999999877664
No 20
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=32.10 E-value=37 Score=32.01 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=25.7
Q ss_pred chhhhhhccccccccchhhHHHHHhccCC
Q psy17488 223 GLYKLLVPLLRCDTTDVRDAVVHALGNIN 251 (1446)
Q Consensus 223 glykllvpllrcdttdvrdavvhalgnin 251 (1446)
|+...|+.||..+..+|+.+++.+|+||-
T Consensus 276 ~~l~~L~~ll~~~~~~vr~~a~~~L~~l~ 304 (450)
T 2jdq_A 276 SALQSLLHLLSSPKESIKKEACWTISNIT 304 (450)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 67788899998888899999999999985
No 21
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=32.00 E-value=23 Score=32.16 Aligned_cols=30 Identities=23% Similarity=0.180 Sum_probs=16.3
Q ss_pred hhhhhhccccccccchhhHHHHHhccCCHH
Q psy17488 224 LYKLLVPLLRCDTTDVRDAVVHALGNINSE 253 (1446)
Q Consensus 224 lykllvpllrcdttdvrdavvhalgninse 253 (1446)
+..+|+.+|.-+..+||.+++.|||+|...
T Consensus 129 ~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~ 158 (280)
T 1oyz_A 129 IVEQSQITAFDKSTNVRRATAFAISVINDK 158 (280)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHhcCCH
Confidence 334455555555556777777777776543
No 22
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=30.57 E-value=19 Score=32.60 Aligned_cols=39 Identities=31% Similarity=0.322 Sum_probs=27.2
Q ss_pred hhhhhhccccccccchhhHHHHHhccC---CHHHHHHHHHHH
Q psy17488 224 LYKLLVPLLRCDTTDVRDAVVHALGNI---NSEALKDLMEEL 262 (1446)
Q Consensus 224 lykllvpllrcdttdvrdavvhalgni---nsealkdlmeel 262 (1446)
....|+.+|.-+..+||.+++.|||+| +.+++..|+.-|
T Consensus 160 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l 201 (280)
T 1oyz_A 160 TIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEML 201 (280)
T ss_dssp CHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHh
Confidence 345667777777778999999999988 455555555443
No 23
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=30.55 E-value=14 Score=36.62 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=27.6
Q ss_pred cchhhhhhccccccccchhhHHHHHhccCCH
Q psy17488 222 TGLYKLLVPLLRCDTTDVRDAVVHALGNINS 252 (1446)
Q Consensus 222 tglykllvpllrcdttdvrdavvhalgnins 252 (1446)
.|+.+.||.||.++..+|+..++.||+||-.
T Consensus 208 ~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 208 MGMVQQLVALVRTEHSPFHEHVLGALCSLVT 238 (296)
T ss_dssp TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHcCCChhHHHHHHHHHHHHHh
Confidence 4778899999999999999999999999843
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=30.26 E-value=31 Score=32.50 Aligned_cols=37 Identities=22% Similarity=0.405 Sum_probs=29.2
Q ss_pred chhhhhhccccccccchhhHHHHHhccC----CHHHHHHHH
Q psy17488 223 GLYKLLVPLLRCDTTDVRDAVVHALGNI----NSEALKDLM 259 (1446)
Q Consensus 223 glykllvpllrcdttdvrdavvhalgni----nsealkdlm 259 (1446)
|+...|+.+|..+..+|+.+++.||+|| +.+.++.|+
T Consensus 318 ~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~ 358 (450)
T 2jdq_A 318 NIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLV 358 (450)
T ss_dssp THHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 6677888888888889999999999999 445555444
No 25
>2js3_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural G PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris}
Probab=28.75 E-value=15 Score=33.59 Aligned_cols=54 Identities=33% Similarity=0.542 Sum_probs=41.7
Q ss_pred ccccccccCCCCCceeecCCCCCCCCCchhhHHHhhhcCceee---echhhhhhcchhhhhhcc
Q psy17488 64 KKTGIHEDSNRNGSVLNLSPSCSAPDPWGFCLFQFLQKGRVLT---YCPSAVAQAWPIVYSRLH 124 (1446)
Q Consensus 64 kktgihedsnrngsvlnlspscsapdpwgfclfqflqkgrvlt---ycpsavaqawpivysrlh 124 (1446)
-||.|-.-+.-.|-.-|-..-|.|--|| ||+|.-+. -||-++||-.--.-.+||
T Consensus 38 vktAIe~vseedGGA~NqCklC~ASVpW-------l~tGDeI~H~pDCpV~iaqr~Ls~k~~lh 94 (96)
T 2js3_A 38 LKTAIEIVSEEDGGAHNQCKLCGASVPW-------LQTGDEIKHADDCPVVIAKQILSSRPKLH 94 (96)
T ss_dssp HHTSEEEEECSSSCEEEEETTSSCEEET-------TCCCSSCCCCTTSTHHHHHHHHHCSSCCC
T ss_pred HHHHHHHHHHHhCCccccCcccCccchh-------hhcCcccccCCCchHHHHHHHHhcCCCcC
Confidence 3688888888899999999999999999 78998765 588888885332333444
No 26
>3f2k_A Histone-lysine N-methyltransferase setmar; histone-lysine N-methyltransferase setmar, SET domain and mariner transposase fusion; 1.85A {Homo sapiens} PDB: 3k9k_A 3k9j_A
Probab=28.55 E-value=39 Score=31.60 Aligned_cols=39 Identities=13% Similarity=0.167 Sum_probs=33.8
Q ss_pred cccchhhHHHHHhccCCHHHHHHHHHHHHHHHHHHhhhh
Q psy17488 235 DTTDVRDAVVHALGNINSEALKDLMEELSVYIREAVDRK 273 (1446)
Q Consensus 235 dttdvrdavvhalgninsealkdlmeelsvyireavdrk 273 (1446)
+..++.+||.+++-.|..+.+..+++-|..-+...|+.+
T Consensus 183 ~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~R~~~vi~~~ 221 (226)
T 3f2k_A 183 NQQDAENAFQEFVESQSTDFYATGINQLISRWQKCVDCN 221 (226)
T ss_dssp SHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHhHHhhcCcHHHHHHHHHHHHHHHHHHhcC
Confidence 447889999999999999999999999988888877754
No 27
>2f7t_A MOS1 transposase; RNAse-H like fold, DDD motif, DNA binding protein; 2.25A {Drosophila mauritiana}
Probab=27.81 E-value=38 Score=31.23 Aligned_cols=39 Identities=10% Similarity=0.020 Sum_probs=33.6
Q ss_pred cccchhhHHHHHhccCCHHHHHHHHHHHHHHHHHHhhhh
Q psy17488 235 DTTDVRDAVVHALGNINSEALKDLMEELSVYIREAVDRK 273 (1446)
Q Consensus 235 dttdvrdavvhalgninsealkdlmeelsvyireavdrk 273 (1446)
+..++.+||.+++-.|..+.+..+++.|-.-+.+.|+.+
T Consensus 184 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~r~~~vi~~~ 222 (227)
T 2f7t_A 184 SYESVKKWLDEWFAAKDDEFYWRGIHKLPERWEKCVASD 222 (227)
T ss_dssp SHHHHHHHHHHHHHHSCHHHHHHHHHTHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhC
Confidence 446899999999999999999999999988888777654
No 28
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=27.38 E-value=33 Score=34.01 Aligned_cols=38 Identities=37% Similarity=0.581 Sum_probs=29.4
Q ss_pred chhhhhhccccccccchhhHHHHHhccCCH--HHHHHHHH
Q psy17488 223 GLYKLLVPLLRCDTTDVRDAVVHALGNINS--EALKDLME 260 (1446)
Q Consensus 223 glykllvpllrcdttdvrdavvhalgnins--ealkdlme 260 (1446)
|....||.||..+..+|+.+++.||+||-. ..+++++-
T Consensus 160 g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~ 199 (528)
T 4b8j_A 160 GAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVL 199 (528)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHH
Confidence 566788999999999999999999999942 34444443
No 29
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=27.19 E-value=87 Score=23.09 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=22.3
Q ss_pred cccccchhhHHHHHhccCCHHHHHHHHHHHHHHHHHHhhh
Q psy17488 233 RCDTTDVRDAVVHALGNINSEALKDLMEELSVYIREAVDR 272 (1446)
Q Consensus 233 rcdttdvrdavvhalgninsealkdlmeelsvyireavdr 272 (1446)
..+..||.+.+.+.+.......++.++.-|...+.-||+.
T Consensus 45 ~it~~~i~~~~~~l~~~~~~~t~~~~~~~l~~~~~~a~~~ 84 (103)
T 2oxo_A 45 DITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAE 84 (103)
T ss_dssp GCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 3444555555554433334455666666666666666654
No 30
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=26.13 E-value=29 Score=34.38 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=25.9
Q ss_pred chhhhhhccccccccchhhHHHHHhccCCH
Q psy17488 223 GLYKLLVPLLRCDTTDVRDAVVHALGNINS 252 (1446)
Q Consensus 223 glykllvpllrcdttdvrdavvhalgnins 252 (1446)
|+...||.||..+..+|+.+++.+||||-.
T Consensus 286 g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 315 (528)
T 4b8j_A 286 GVCPRLVELLLHPSPSVLIPALRTVGNIVT 315 (528)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHcCCChhHHHHHHHHHHHHHc
Confidence 567788999988888999999999999853
No 31
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=25.28 E-value=12 Score=33.01 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=14.4
Q ss_pred hccccccccchh---------hHHHHHhccC
Q psy17488 229 VPLLRCDTTDVR---------DAVVHALGNI 250 (1446)
Q Consensus 229 vpllrcdttdvr---------davvhalgni 250 (1446)
|.++.||.+|.. |+|||++|..
T Consensus 48 ~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~ 78 (227)
T 3dhn_A 48 LKVKKADVSSLDEVCEVCKGADAVISAFNPG 78 (227)
T ss_dssp EEEECCCTTCHHHHHHHHTTCSEEEECCCC-
T ss_pred eEEEEecCCCHHHHHHHhcCCCEEEEeCcCC
Confidence 455677776643 6788888765
No 32
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=24.10 E-value=23 Score=27.42 Aligned_cols=12 Identities=58% Similarity=1.220 Sum_probs=10.5
Q ss_pred CchhhHHHhhhc
Q psy17488 90 PWGFCLFQFLQK 101 (1446)
Q Consensus 90 pwgfclfqflqk 101 (1446)
.+||.||.+|||
T Consensus 20 afgfwlfkylqk 31 (32)
T 2lx0_A 20 AFGFWLFKYLQK 31 (32)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc
Confidence 379999999997
No 33
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=23.74 E-value=29 Score=34.25 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=24.5
Q ss_pred chhhhhhc-cccccccchhhHHHHHhccC
Q psy17488 223 GLYKLLVP-LLRCDTTDVRDAVVHALGNI 250 (1446)
Q Consensus 223 glykllvp-llrcdttdvrdavvhalgni 250 (1446)
|....||. ||.....+|+...+.+||||
T Consensus 81 G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~i 109 (296)
T 1xqr_A 81 SGMHLLVGRYLEAGAAGLRWRAAQLIGTC 109 (296)
T ss_dssp THHHHHHHTTTTCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 44567888 99999999999999999998
No 34
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=23.44 E-value=1.1e+02 Score=23.82 Aligned_cols=39 Identities=10% Similarity=0.127 Sum_probs=21.0
Q ss_pred ccccchhhHHHHHhccCCHHHHHHHHHHHHHHHHHHhhh
Q psy17488 234 CDTTDVRDAVVHALGNINSEALKDLMEELSVYIREAVDR 272 (1446)
Q Consensus 234 cdttdvrdavvhalgninsealkdlmeelsvyireavdr 272 (1446)
.+..||.+.+......+....++.++.-|...+.-||+.
T Consensus 44 It~~~i~~~~~~l~~~~s~~t~~~~~~~lr~~~~~A~~~ 82 (111)
T 2kiw_A 44 IKKHDYQRFVDDISAQYSKNYVDSIVASTNMIFKYAYDT 82 (111)
T ss_dssp CCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHHHHh
Confidence 344455554444333445555666666666666666653
No 35
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=23.08 E-value=59 Score=31.44 Aligned_cols=31 Identities=32% Similarity=0.433 Sum_probs=27.5
Q ss_pred cchhhhhhccccccccchhhHHHHHhccCCH
Q psy17488 222 TGLYKLLVPLLRCDTTDVRDAVVHALGNINS 252 (1446)
Q Consensus 222 tglykllvpllrcdttdvrdavvhalgnins 252 (1446)
.++...|+.||.++..+|+.+.+.+|+||-.
T Consensus 265 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~ 295 (529)
T 1jdh_A 265 EGLLGTLVQLLGSDDINVVTCAAGILSNLTC 295 (529)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 4788899999999999999999999999854
No 36
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=21.74 E-value=62 Score=30.71 Aligned_cols=68 Identities=16% Similarity=0.129 Sum_probs=47.9
Q ss_pred CCcCCCCCCCCCCCCccc--hhhhhhcccc----ccccchhhHHHHHhccCCHHHHHHHHHHHHHHHHHHhhhh
Q psy17488 206 GVENKPAPTASPPPSPTG--LYKLLVPLLR----CDTTDVRDAVVHALGNINSEALKDLMEELSVYIREAVDRK 273 (1446)
Q Consensus 206 gvenkpaptaspppsptg--lykllvpllr----cdttdvrdavvhalgninsealkdlmeelsvyireavdrk 273 (1446)
|+.--.-|+-||--.|.- |+..|--.|. -+..++.+||.+++-.|+.+.+..+++-|..-+.+.|+.+
T Consensus 267 ~~~~~~~p~~spdlnpie~~~~~~lk~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~r~~~~i~~~ 340 (345)
T 3hot_A 267 NWEVLPHAAYSPDLAPSDYHLFASMGHALAEQRFDSYESVKKWLDEWFAAKDDEFYWRGIHKLPERWEKCVASD 340 (345)
T ss_dssp TCEECCCCTTCGGGCHHHHTHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcEeccCCCCCCCcccccchhhHHHHHHhccccCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 444455566666555654 5555543332 1446788899999999999999999999988888777654
No 37
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=21.21 E-value=45 Score=33.88 Aligned_cols=28 Identities=29% Similarity=0.530 Sum_probs=24.3
Q ss_pred chhhhhhccccccccchhhHHHHHhccC
Q psy17488 223 GLYKLLVPLLRCDTTDVRDAVVHALGNI 250 (1446)
Q Consensus 223 glykllvpllrcdttdvrdavvhalgni 250 (1446)
|..+.|+.||.|..++|..+++.||.||
T Consensus 401 g~i~~L~~LL~~~d~~i~~~~L~aL~ni 428 (510)
T 3ul1_B 401 GIIEPLMNLLSAKDTKIIQVILDAISNI 428 (510)
T ss_dssp TCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 5667889999998889999999999887
No 38
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=21.10 E-value=1.6e+02 Score=27.43 Aligned_cols=38 Identities=8% Similarity=0.145 Sum_probs=31.5
Q ss_pred hhh-HHHHHhccCCHHHHHHHHHHHHHHHHHHhhhhhHH
Q psy17488 239 VRD-AVVHALGNINSEALKDLMEELSVYIREAVDRKTEN 276 (1446)
Q Consensus 239 vrd-avvhalgninsealkdlmeelsvyireavdrkten 276 (1446)
.-| +|.|+|..|..+.+-+||.++...|..--++.++-
T Consensus 37 ap~~~IS~~Laslpp~Ql~eiL~qmK~~~~~nP~~a~~L 75 (109)
T 2l9b_A 37 TPAMMISSELAKKPKEVQLKFLQKFQEWTRAHPEDAASL 75 (109)
T ss_dssp CHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 457 89999999999999999999998887765554443
No 39
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=20.85 E-value=69 Score=33.38 Aligned_cols=44 Identities=20% Similarity=0.193 Sum_probs=22.7
Q ss_pred hhhhhhccccccc----------cchhhHHHHHhccCCHHHHHHHHHHHHHHHHHHh
Q psy17488 224 LYKLLVPLLRCDT----------TDVRDAVVHALGNINSEALKDLMEELSVYIREAV 270 (1446)
Q Consensus 224 lykllvpllrcdt----------tdvrdavvhalgninsealkdlmeelsvyireav 270 (1446)
|-..-|+.|.+|. -|+-|-++-++|..+.++|.+ .|..||+..+
T Consensus 63 l~gTevd~l~~D~~G~Li~~~~lR~~FDYfLs~~gE~~~~~i~~---~v~~~i~~~l 116 (332)
T 2es4_D 63 LAGSHAPRLPLAAGGRLARTRAVREFFDYCLTAQGELTPAALDA---LVRREIAAQL 116 (332)
T ss_dssp TTTCCCCCCCBCTTSSBCCSTHHHHHHHHHHTTGGGSCHHHHHH---HHHHHHHHHH
T ss_pred ccCCCCCCcccCCCCCccccHHHHHHHHHHHhccCCCCHHHHHH---HHHHHHHHhC
Confidence 3333455566665 344444555666665555443 3445555544
No 40
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=20.67 E-value=35 Score=33.01 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=29.1
Q ss_pred chhhhhhccccccccchhhHHHHHhccCC-HHHHHHHHHH
Q psy17488 223 GLYKLLVPLLRCDTTDVRDAVVHALGNIN-SEALKDLMEE 261 (1446)
Q Consensus 223 glykllvpllrcdttdvrdavvhalgnin-sealkdlmee 261 (1446)
|+...||.||..+..+|+.++.+||+|+. ....+++|.+
T Consensus 460 ~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~ 499 (529)
T 1jdh_A 460 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 499 (529)
T ss_dssp TCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred CCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 45678889999999999999999999864 2344444444
Done!