RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17488
(1446 letters)
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo
sapiens} SCOP: a.118.1.24
Length = 457
Score = 40.2 bits (93), Expect = 0.004
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 226 KLLVPLLRCDTTDVRDAVVHALGNI--NSEALKDLMEELSVYIREAVD--RKTENMRRRR 281
LV LLR +V+ A AL N+ S K + IREAV R+T N ++
Sbjct: 47 CKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNG-IREAVSLLRRTGNAEIQK 105
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 39.2 bits (92), Expect = 0.006
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 226 KLLVPLLRCDTTDVRDAVVHALGNI--NSEALKDLMEE 261
LV LL + + AL NI K ++E
Sbjct: 183 PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE 220
Score = 38.8 bits (91), Expect = 0.009
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 16/60 (26%)
Query: 227 LLVPLLRCDTTDVRDAVVHALGNI---NSE------------ALKDLMEELSVYIRE-AV 270
LV LL + + AL NI +E AL L+ + I + A+
Sbjct: 58 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 117
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 38.4 bits (90), Expect = 0.008
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 223 GLYKLLVPLLRCDTTDVRDAVVHALGNI--NSEALKDLMEE 261
G LV LL + + AL NI K ++E
Sbjct: 138 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE 178
Score = 37.2 bits (87), Expect = 0.021
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 2/34 (5%)
Query: 228 LVPLLRCDTTDVRDAVVHALGNI--NSEALKDLM 259
LV LL + + AL NI +
Sbjct: 59 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 36.5 bits (85), Expect = 0.016
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 228 LVPLLRCDTTDVRDAVVHALGNINSE----ALKDLMEELSVYIREAV 270
L+ LL D+ VR +L I E A++ L E + + R+
Sbjct: 78 LIKLLEDDSGFVRSGAARSLEQIGGERVRAAMEKLAETGTGFARKVA 124
Score = 36.1 bits (84), Expect = 0.019
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 228 LVPLLRCDTTDVRDAVVHALGNINSEALKDLMEEL---SVYIREAV 270
+ + VR V AL + EA + L+E L IR A
Sbjct: 17 RGSHMADENKWVRRDVSTALSRMGDEAFEPLLESLSNEDWRIRGAA 62
Score = 33.0 bits (76), Expect = 0.25
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 228 LVPLLRCDTTDVRDAVVHALGNINS----EALKDLMEELSVYIREAV 270
L+ L + +R A +GN E L L+E+ S ++R
Sbjct: 47 LLESLSNEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGA 93
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 37.9 bits (88), Expect = 0.022
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 223 GLYKLLVPLLRCDTTDVRDAVVHALGNI--NSEALKDL 258
G + + LL + DV++ V ALGNI +S +D
Sbjct: 107 GAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Score = 37.6 bits (87), Expect = 0.032
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 222 TGLYKLLVPLLRCDTTDVRDAVVHALGNI--NSEALKDLMEELSV 264
G+ + LV LL + V + A+GNI + ++ S
Sbjct: 233 AGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSA 277
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 37.8 bits (88), Expect = 0.024
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 223 GLYKLLVPLLRCDTTDVRDAVVHALGNI--NSEALKDLMEE 261
GL LV LL D +V L N+ N+ K ++ +
Sbjct: 266 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ 306
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 36.9 bits (85), Expect = 0.056
Identities = 14/93 (15%), Positives = 26/93 (27%)
Query: 223 GLYKLLVPLLRCDTTDVRDAVVHALGNINSEALKDLMEELSVYIREAVDRKTENMRRRRR 282
G L LL V L ++ + +D + LSV + ++ R
Sbjct: 634 GATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWNETG 693
Query: 283 RDALRLQSYRPESGERKSYRLESGERKSYRPES 315
L + + G R+ +
Sbjct: 694 DLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQD 726
Score = 33.9 bits (77), Expect = 0.43
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 223 GLYKLLVPLLRCDTTDVRDAVVHALGNI--NSEALKDLMEE 261
GL LV LL D +V L N+ N+ K ++ +
Sbjct: 399 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ 439
Score = 33.9 bits (77), Expect = 0.43
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 226 KLLVPLLRCDTTDVRDAVVHALGNI-NSEALKDLMEE 261
L V LL +++ L + + + +E
Sbjct: 596 PLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 632
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 35.7 bits (83), Expect = 0.063
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 228 LVPLLRCDTTDVRDAVVHALGNINS----EALKDLMEELSVYIREAV 270
L+ L+ + VR A ALG I E L +++ ++R++
Sbjct: 50 LIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSA 96
Score = 33.8 bits (78), Expect = 0.22
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 228 LVPLLRCDTTDVRDAVVHALGNINSE----ALKDLMEELSVYIREAV 270
L+ L+ + VR + ALG I E A++ L E + + R+
Sbjct: 143 LIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVA 189
Score = 32.3 bits (74), Expect = 0.80
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 227 LLVPLLRCDTTDVRDAVVHALGNINSE----ALKDLMEELSVYIREAV 270
L+ L+ + VR A ALG I E L +++ ++R++
Sbjct: 111 PLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSA 158
Score = 30.7 bits (70), Expect = 2.7
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 228 LVPLLRCDTTDVRDAVVHALGNINS----EALKDLMEELSVYIREA 269
L+ L+ + VR + ALG I E L +++ ++R A
Sbjct: 81 LIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIA 126
Score = 30.4 bits (69), Expect = 3.4
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 227 LLVPLLRCDTTDVRDAVVHALGNINSE----ALKDLMEELSVYIREAV 270
+ + L+ D+ VR A +ALG I E L +++ ++R A
Sbjct: 18 MYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAA 65
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 35.4 bits (81), Expect = 0.070
Identities = 8/40 (20%), Positives = 11/40 (27%), Gaps = 3/40 (7%)
Query: 27 RPESGERKSYRPESGERKSYCPESGERKS---YRPESGER 63
R +R R + CPE R G+
Sbjct: 4 RESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDV 43
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 36.1 bits (83), Expect = 0.087
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 223 GLYKLLVPLLRCDTTDVRDAVVHALGNI--NSEALKDLMEE 261
GL LV LL D +V L N+ N+ K ++ +
Sbjct: 263 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ 303
Score = 35.3 bits (81), Expect = 0.15
Identities = 17/123 (13%), Positives = 32/123 (26%), Gaps = 19/123 (15%)
Query: 223 GLYKLLVPLLRCDTTDVRDAVVHALGNI------------NSEALKDLMEELSVYIRE-- 268
G L LL V L + + E L + E
Sbjct: 498 GATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMAWNETA 557
Query: 269 --AVDRKTENMRRRRRRDALRLQSYRPESGERKSYRLES---GERKSYRPESGERKSYRP 323
+D + R+D +S+ + + ++ E + P + P
Sbjct: 558 DLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDALGMDPMMEHEMGGHHPGADYPVDGLP 617
Query: 324 ESG 326
+ G
Sbjct: 618 DLG 620
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 36.2 bits (82), Expect = 0.11
Identities = 10/57 (17%), Positives = 21/57 (36%)
Query: 224 LYKLLVPLLRCDTTDVRDAVVHALGNINSEALKDLMEELSVYIREAVDRKTENMRRR 280
+ L+P L VR + ALG++ + +L ++ + + R
Sbjct: 176 ILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTR 232
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 34.6 bits (80), Expect = 0.13
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 228 LVPLLRCDTTDVRDAVVHALGNINS----EALKDLMEELSVYIREAV 270
L+ L+ + VR A ALG I E L +++ ++R++
Sbjct: 55 LIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSA 101
Score = 33.1 bits (76), Expect = 0.40
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 228 LVPLLRCDTTDVRDAVVHALGNINSE----ALKDLMEELSVYIREAV 270
L+ L+ + VR + ALG I E A++ L E + + R+
Sbjct: 148 LIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVA 194
Score = 32.0 bits (73), Expect = 1.0
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 227 LLVPLLRCDTTDVRDAVVHALGNINSE----ALKDLMEELSVYIREAV 270
L+ L+ + VR A ALG I E L +++ ++R++
Sbjct: 116 PLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSA 163
Score = 30.8 bits (70), Expect = 2.6
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 228 LVPLLRCDTTDVRDAVVHALGNINS----EALKDLMEELSVYIREAV 270
L+ L+ + VR + ALG I E L +++ ++R A
Sbjct: 86 LIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAA 132
Score = 29.6 bits (67), Expect = 6.1
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 227 LLVPLLRCDTTDVRDAVVHALGNINSE----ALKDLMEELSVYIREA 269
+ + L+ D+ VR A +ALG I E L +++ ++R A
Sbjct: 23 MYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRA 69
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 34.6 bits (79), Expect = 0.18
Identities = 9/41 (21%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 223 GLYKLLVPLLRCDTTDVRDAVVHALGNI---NSEALKDLME 260
G+ + LV L+R + + + V+ AL ++ + +++ E
Sbjct: 209 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE 249
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex,
exonuclease, hydrolase, mRNA proces nuclease, nucleus,
rRNA processing, transcription; 2.20A
{Schizosaccharomyces pombe}
Length = 899
Score = 35.1 bits (79), Expect = 0.20
Identities = 25/220 (11%), Positives = 57/220 (25%), Gaps = 5/220 (2%)
Query: 248 GNINSEALKDLMEELSVYIREAVDRKTENMRRRRRRDALRLQSYRPESGERKSY--RLES 305
G++N + ++ + + R + RR R Q + E ++
Sbjct: 376 GSVNLARAEVILSAVGNQEDDIFKRLKQQEDRRNENYRRRQQRESNQESESYVDNVVIQR 435
Query: 306 GERKSYRPESGERKSYRPESGERKSYRPESGERKSYRPESEERKSYRPESGERKSY---R 362
KS ++ K + E+ S R + R
Sbjct: 436 SVETQSTEVVTSSKSTSVDTKPPKKTQKIDAPAPVDLVNLSEKTSNRSLGATNRELINNR 495
Query: 363 PESGERKSYRPESGERKSYRPESGERKSYRPESGERKSYRPESGERKSYRPESGERKSYR 422
+ S + + S + + +S S ++ +S
Sbjct: 496 AANRLGLSREAAAVSSVNKLAASALKAQLVSNETLQNVPLEDSIASSSAYEDTDSIESST 555
Query: 423 PESGERKSYRPESGERKSYRPESGERKSYRPESGERKSYR 462
P + G+++ + E ++ YR
Sbjct: 556 PVVHPIDTKVSNVGQKRKAPDSTEENENTDTVRLYEPGYR 595
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Length = 233
Score = 33.0 bits (75), Expect = 0.46
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 226 KLLVPLLRCDTTDVRDAVVHALGNI 250
L+ LL+ DV+ AV AL N+
Sbjct: 55 LKLLQLLKVQNEDVQRAVCGALRNL 79
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 33.8 bits (77), Expect = 0.49
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Query: 223 GLYKLLVPLLRCDTTDVRDAVVHALGNI--------NSEALKDLMEEL 262
G+ + L+ LL T + ++ A+ NI +E L ++EE
Sbjct: 401 GIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEEC 448
Score = 33.1 bits (75), Expect = 0.87
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 222 TGLYKLLVPLLRCDTTDVRDAVVHALGNI--NSEALKDLMEELSV 264
G+ LV LL + + A+GNI ++ + +
Sbjct: 273 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 317
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.67
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 18/96 (18%)
Query: 218 PPSPTGLYKLLVPLLRCDTTDVRDAVVHALGNINSEALKD----------LMEELSVYIR 267
+ +G +L LL V+ V L IN + L +M + + R
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVL-RINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 268 EAVDRKTE-----NMRRRRRRDALR--LQSYRPESG 296
+ + + N+ R + LR L RP
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo
domain, mRNA turnover, RRN processing, RNA binding, DNA
binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Length = 1155
Score = 33.0 bits (74), Expect = 0.94
Identities = 16/140 (11%), Positives = 43/140 (30%), Gaps = 8/140 (5%)
Query: 248 GNINSEALKDLMEELSVYIREAVDRKTENMRRRRRRDALRLQSYRPESGERKSYRLESGE 307
G IN ++ LS + ++K ++ + +L++ E +++ +
Sbjct: 328 GKINLARFSIWLKYLSDFEYLNFEKKDIDVEWFNQ----QLENISLEGERKRTRMGKKLL 383
Query: 308 RKSYRPESGERKSYRPESGERKSYRPESGERKSYRPESEERKSYRPESGERKSYRPESGE 367
K + G K + ++ +RK P ++ ++ +
Sbjct: 384 MKQQKKLIGAVKPWLLKTVQRKVTSELQDADFEIFPLEDKELVRANLDFLKEFAF----D 439
Query: 368 RKSYRPESGERKSYRPESGE 387
S + Y +
Sbjct: 440 LGLILAHSKSKDLYYFKLDL 459
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A
{Thermus thermophilus} PDB: 2yvx_A
Length = 473
Score = 31.8 bits (73), Expect = 1.7
Identities = 8/56 (14%), Positives = 19/56 (33%)
Query: 240 RDAVVHALGNINSEALKDLMEELSVYIREAVDRKTENMRRRRRRDALRLQSYRPES 295
+ L ++ + L D ++ + R + + R R + L Y +
Sbjct: 101 PWRLREILEELSLDDLADALQAVRKEDPAYFQRLKDLLDPRTRAEVEALARYEEDE 156
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 31.5 bits (71), Expect = 2.3
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 223 GLYKLLVPLLRCDTTDVRDAVVHALGNI--NSEALKDL 258
L + LL + +V++ + ALGN+ +S +D
Sbjct: 173 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 210
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 30.9 bits (70), Expect = 2.5
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 12/62 (19%)
Query: 227 LLVPLLRCDTTDVRDAVVHALGNINSE-ALKDLMEELSVYIREAVDRKTENMRRRRRRDA 285
V +L+ +VR + L + L L +EL + V +A
Sbjct: 196 CFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELK---KNTV--------YDDIIEA 244
Query: 286 LR 287
Sbjct: 245 AG 246
Score = 30.5 bits (69), Expect = 4.1
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 227 LLVPLLRCDTTDVRDAVVHALGNINSE----ALKDLMEELSVYIREA 269
+T+VR A A+ IN + L +L+++ + +R
Sbjct: 132 QSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNW 178
Score = 30.2 bits (68), Expect = 4.3
Identities = 6/47 (12%), Positives = 13/47 (27%), Gaps = 4/47 (8%)
Query: 228 LVPLLRCDTTDVRDAVVHALGNINSE----ALKDLMEELSVYIREAV 270
L LL + R + L + + + + R+
Sbjct: 28 LFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIG 74
Score = 29.0 bits (65), Expect = 9.9
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 9/60 (15%)
Query: 228 LVPLLRCDTTDVRDAVVHALGNINSEALKDLMEELSVYIREAVDRKTENMRRRRRRDALR 287
L L+ V D ++ A G + + L + + + + +N D L+
Sbjct: 228 LCDELK--KNTVYDDIIEAAGELGDKTLLPV-------LDTMLYKFDDNEIITSAIDKLK 278
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein;
2.30A {Thermus thermophilus} PDB: 2yvz_A
Length = 278
Score = 29.5 bits (67), Expect = 8.2
Identities = 8/56 (14%), Positives = 19/56 (33%)
Query: 240 RDAVVHALGNINSEALKDLMEELSVYIREAVDRKTENMRRRRRRDALRLQSYRPES 295
+ L ++ + L D ++ + R + + R R + L Y +
Sbjct: 81 PWRLREILEELSLDDLADALQAVRKEDPAYFQRLKDLLDPRTRAEVEALARYEEDE 136
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.302 0.125 0.353
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 21,174,217
Number of extensions: 1271085
Number of successful extensions: 1773
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1735
Number of HSP's successfully gapped: 146
Length of query: 1446
Length of database: 6,701,793
Length adjustment: 106
Effective length of query: 1340
Effective length of database: 3,742,167
Effective search space: 5014503780
Effective search space used: 5014503780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 64 (28.4 bits)