RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17488
         (1446 letters)



>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 457

 Score = 39.0 bits (89), Expect = 0.003
 Identities = 21/86 (24%), Positives = 29/86 (33%), Gaps = 3/86 (3%)

Query: 223 GLYKLLVPLLRCDTTDVRDAVVHALGNI--NSEALKDLMEELSVYIREAVDRKTENMRRR 280
           G    LV LLR    +V+ A   AL N+   S   K      +  IREAV          
Sbjct: 44  GGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNG-IREAVSLLRRTGNAE 102

Query: 281 RRRDALRLQSYRPESGERKSYRLESG 306
            ++    L      + E K   +   
Sbjct: 103 IQKQLTGLLWNLSSTDELKEELIADA 128


>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein
           1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 1207

 Score = 35.9 bits (81), Expect = 0.051
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 11/69 (15%)

Query: 224 LYKLLVPLLRCDTTDVRDAVVHALGNI----NSEALKDLMEELSVYIREAVDRKTENMRR 279
           +   L+P L      VR   + ALG++     +    DL+E L       +   ++N   
Sbjct: 173 ILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHL-------LSELSKNDSM 225

Query: 280 RRRRDALRL 288
              R  ++ 
Sbjct: 226 STTRTYIQC 234


>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 111

 Score = 31.8 bits (71), Expect = 0.17
 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 3/59 (5%)

Query: 238 DVRDAVVHALGNINSEALKDLMEELS---VYIREAVDRKTENMRRRRRRDALRLQSYRP 293
            VR  V  AL  +  EA + L+E LS     IR A      N +  R  + L       
Sbjct: 7   WVRRDVSTALSRMGDEAFEPLLESLSNEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDD 65


>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli
           [TaxId: 562]}
          Length = 276

 Score = 30.2 bits (66), Expect = 1.8
 Identities = 6/47 (12%), Positives = 13/47 (27%), Gaps = 4/47 (8%)

Query: 228 LVPLLRCDTTDVRDAVVHALGNINSE----ALKDLMEELSVYIREAV 270
           L  LL    +  R +    L     +       +   + +   R+  
Sbjct: 24  LFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIG 70


>d1pprm2 a.131.1.1 (M:157-312) Peridinin-chlorophyll protein
           {Dinoflagellate (Amphidinium carterae) [TaxId: 2961]}
          Length = 156

 Score = 29.1 bits (65), Expect = 2.2
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 204 GAGVENKPAPTASPPPSPTGLYKLLVPLLRCDTTDVRDAV---VHALGNINS 252
            + V  KP P  S   S   + K++V   + D   ++ A      A+G+I++
Sbjct: 31  LSDVYMKPLPGVSAQQSLKAIDKMIVMGAQADGNALKAAAEAHHKAIGSIDA 82


>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 70

 Score = 26.9 bits (60), Expect = 3.2
 Identities = 10/50 (20%), Positives = 27/50 (54%), Gaps = 8/50 (16%)

Query: 247 LGNINSEALKDLMEELSVYIREAVDRKTENMRRRRRR--------DALRL 288
           +G+++ +A K+L E++S+ ++  V    + M   +R+         +L++
Sbjct: 21  VGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.302    0.125    0.353 

Gapped
Lambda     K      H
   0.267   0.0369    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,150,706
Number of extensions: 261059
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 7
Length of query: 1446
Length of database: 2,407,596
Length adjustment: 97
Effective length of query: 1349
Effective length of database: 1,075,786
Effective search space: 1451235314
Effective search space used: 1451235314
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 59 (27.5 bits)