BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17489
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEV 98
+L+TG TGF+G+ L+ +LLR G + +VR + R++ +S + L
Sbjct: 76 VLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFK 135
Query: 99 PDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAASL 141
+++V+ + LGL + + + V++I AA +
Sbjct: 136 ELAADRLEVVAGDKSEPDLGLDQPXWRRLAETVDLIVDSAAXV 178
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 38 QILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSS 77
+I+VTGG GF+G L+DKL+ ++ + I+ RD GS+
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDIVQRDTGGSA 41
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 33.5 bits (75), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 30/135 (22%)
Query: 38 QILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKE 97
I+VTGG GF+G + + + PD +++ V DK + K L +++ DR+
Sbjct: 6 NIIVTGGAGFIGSNFVHYVYNNHPD---VHVTVLDKLTYAGN---KANLEAILGDRVELV 59
Query: 98 VPDFRSKIQVIPSNLESEHLGLSEDSEQLIK--SKVNIIFHCAASLRFDEALQKA---IR 152
V D D+E + K +K + I H AA D +L I
Sbjct: 60 VGDI-------------------ADAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIH 100
Query: 153 ANLYATKQMLNLAKE 167
N T +L A++
Sbjct: 101 TNFIGTYTLLEAARK 115
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 33.1 bits (74), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 36/149 (24%)
Query: 32 DFYRDGQILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIF 91
+F++ ++ VTG TGF G L L ++GAI KG + + L ++
Sbjct: 5 NFWQGKRVFVTGHTGFKGSWLSLWLT----EMGAIV------KGYALDAPTVPSLFEIV- 53
Query: 92 DRLNKEVPDFRSKIQVIPSNLESEHLGLSEDSEQLIKS----KVNIIFHCAAS----LRF 143
RLN +L H+G D E+L S K I+FH AA L +
Sbjct: 54 -RLN---------------DLMESHIGDIRDFEKLRSSIAEFKPEIVFHMAAQPLVRLSY 97
Query: 144 DEALQKAIRANLYATKQMLNLAKECVNLK 172
++ + K N+ T +L K+ N+K
Sbjct: 98 EQPI-KTYSTNVMGTVHLLETVKQVGNIK 125
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 17/115 (14%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEV 98
I+VTGG GF+G ++DKL S I+V D S EE V V D ++
Sbjct: 4 IVVTGGAGFIGSHVVDKLSESNE------IVVIDNLSSGNEEFVNEAARLVKADLAADDI 57
Query: 99 PDF---RSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAASLRFDEALQKA 150
D+ ++ I +N + +G +E+ +++ ++ V A+ R EA++KA
Sbjct: 58 KDYLKGAEEVWHIAANPDV-RIG-AENPDEIYRNNV------LATYRLLEAMRKA 104
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 38 QILVTGGTGFMGKLLIDKLLR-SFPDIGAIYIMVRDK 73
++LVTGG GF+G + +LL ++PD+ A ++V D
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDS 38
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose
4,6-Dehydratase) From Streptomyces Venezuelae With Nad
And Tyd Bound
Length = 337
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 38 QILVTGGTGFMGKLLIDKLLR-SFPDIGAIYIMVRDK 73
++LVTGG GF+G + +LL ++PD+ A ++V D
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDS 38
>pdb|2HRZ|A Chain A, The Crystal Structure Of The Nucleoside-diphosphate-sugar
Epimerase From Agrobacterium Tumefaciens
Length = 342
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/134 (20%), Positives = 59/134 (44%), Gaps = 26/134 (19%)
Query: 33 FYRDGQILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFD 92
+++ I + G G +G+ L +L++ G++ G P E+ + D
Sbjct: 11 YFQGXHIAIIGAAGXVGRKLTQRLVKD----GSL--------GGKPVEKF------TLID 52
Query: 93 RLNKEVP-DFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAASLRFDEAL--QK 149
E P F + ++L + ++E+L++++ ++IFH AA + + L K
Sbjct: 53 VFQPEAPAGFSGAVDARAADLSA-----PGEAEKLVEARPDVIFHLAAIVSGEAELDFDK 107
Query: 150 AIRANLYATKQMLN 163
R NL T+ + +
Sbjct: 108 GYRINLDGTRYLFD 121
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 37 GQILVTGGTGFMGKLLIDKLLRS 59
G++ VTGGTGF+G +I LL +
Sbjct: 2 GRVCVTGGTGFLGSWIIKSLLEN 24
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 38 QILVTGGTGFMGKLLIDKLL 57
+I+VTGG GF+G L+DKL+
Sbjct: 2 RIVVTGGAGFIGSHLVDKLV 21
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 33/134 (24%)
Query: 38 QILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKE 97
+IL+TGG GF+G L DKL+ + + V D + + V++ + F+ +N +
Sbjct: 7 RILITGGAGFVGSHLTDKLM-----MDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHD 61
Query: 98 VPDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAASLRFDEALQ---KAIRAN 154
V V P +E V+ I+H A+ + K ++ N
Sbjct: 62 V--------VEPLYIE-----------------VDQIYHLASPASPPNYMYNPIKTLKTN 96
Query: 155 LYATKQMLNLAKEC 168
T ML LAK
Sbjct: 97 TIGTLNMLGLAKRV 110
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 29/130 (22%)
Query: 38 QILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDK--KGSSPEERVKNMLNSVIFDRLN 95
++LVTGG GF+G I +L PD I I DK GS+P +K++ + + +
Sbjct: 5 KLLVTGGMGFIGSNFIRYILEKHPDWEVINI---DKLGYGSNPAN-LKDLEDDPRYTFVK 60
Query: 96 KEVPDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAASLRFDEALQKA---IR 152
+V D+ E ++L++ KV+ + H AA D ++ +
Sbjct: 61 GDVADY-------------------ELVKELVR-KVDGVVHLAAESHVDRSISSPEIFLH 100
Query: 153 ANLYATKQML 162
+N+ T +L
Sbjct: 101 SNVIGTYTLL 110
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 38/143 (26%)
Query: 12 GLLDTALPESPIMQEEQKVDDFYRDGQILVTGGTGFMGKLLIDKL----------LRSFP 61
G+L+ +L P+ G L+TG TGF+G LI+ L +R+
Sbjct: 139 GILEDSLSHRPL-------------GNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADN 185
Query: 62 DIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEVPDFRSKIQVI-PSNLE------- 113
+ A Y ++ + EE V+ ML+++ V DF V+ P N++
Sbjct: 186 EEIAWYKLMTNLNDYFSEETVEMMLSNI-----EVIVGDFECMDDVVLPENMDTIIHAGA 240
Query: 114 -SEHLGLSEDSEQL-IKSKVNII 134
++H G ++ E++ ++ V++I
Sbjct: 241 RTDHFGDDDEFEKVNVQGTVDVI 263
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 25/140 (17%)
Query: 38 QILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKE 97
++LVTGG+G++G +LL++ D+ + + K+ P + +RL +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLP-----------VIERLGGK 50
Query: 98 VPDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAASLRFDEALQKAIRA---N 154
P F + ++ +E L +E L ++ + H A E++QK + N
Sbjct: 51 HPTF------VEGDIRNEALM----TEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNN 100
Query: 155 LYATKQMLNLAKECVNLKRF 174
+ T ++++ A N+K F
Sbjct: 101 VNGTLRLIS-AMRAANVKNF 119
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 25/140 (17%)
Query: 38 QILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKE 97
++LVTGG+G++G +LL++ D+ + + K+ P + +RL +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLP-----------VIERLGGK 50
Query: 98 VPDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAASLRFDEALQKAIRA---N 154
P F + ++ +E L +E L ++ + H A E++QK + N
Sbjct: 51 HPTF------VEGDIRNEALM----TEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNN 100
Query: 155 LYATKQMLNLAKECVNLKRF 174
+ T ++++ A N+K F
Sbjct: 101 VNGTLRLIS-AMRAANVKNF 119
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 25/140 (17%)
Query: 38 QILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKE 97
++LVTGG+G++G +LL++ D+ + + K+ P + +RL +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLP-----------VIERLGGK 50
Query: 98 VPDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAASLRFDEALQKAIRA---N 154
P F + ++ +E L +E L ++ + H A E++QK + N
Sbjct: 51 HPTF------VEGDIRNEALM----TEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNN 100
Query: 155 LYATKQMLNLAKECVNLKRF 174
+ T ++++ A N+K F
Sbjct: 101 VNGTLRLIS-AMRAANVKNF 119
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 25/140 (17%)
Query: 38 QILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKE 97
++LVTGG+G++G +LL++ D+ + + K+ P + +RL +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLP-----------VIERLGGK 50
Query: 98 VPDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAASLRFDEALQKAIRA---N 154
P F + ++ +E L +E L ++ + H A E++QK + N
Sbjct: 51 HPTF------VEGDIRNEALM----TEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNN 100
Query: 155 LYATKQMLNLAKECVNLKRF 174
+ T ++++ A N+K F
Sbjct: 101 VNGTLRLIS-AMRAANVKNF 119
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 25/140 (17%)
Query: 38 QILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKE 97
++LVTGG+G++G +LL++ D+ + + K+ P + +RL +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLP-----------VIERLGGK 50
Query: 98 VPDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAASLRFDEALQKAIRA---N 154
P F + ++ +E L +E L ++ + H A E++QK + N
Sbjct: 51 HPTF------VEGDIRNEALM----TEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNN 100
Query: 155 LYATKQMLNLAKECVNLKRF 174
+ T ++++ A N+K F
Sbjct: 101 VNGTLRLIS-AMRAANVKNF 119
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 25/140 (17%)
Query: 38 QILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKE 97
++LVTGG+G++G +LL++ D+ + + K+ P + +RL +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLP-----------VIERLGGK 50
Query: 98 VPDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAASLRFDEALQKAIRA---N 154
P F + ++ +E L +E L ++ + H A E++QK + N
Sbjct: 51 HPTF------VEGDIRNEALM----TEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNN 100
Query: 155 LYATKQMLNLAKECVNLKRF 174
+ T ++++ A N+K F
Sbjct: 101 VNGTLRLIS-AMRAANVKNF 119
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 25/140 (17%)
Query: 38 QILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKE 97
++LVTGG+G++G +LL++ D+ + + K+ P + +RL +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLP-----------VIERLGGK 50
Query: 98 VPDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAASLRFDEALQKAIRA---N 154
P F + ++ +E L +E L ++ + H A E++QK + N
Sbjct: 51 HPTF------VEGDIRNEALM----TEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNN 100
Query: 155 LYATKQMLNLAKECVNLKRF 174
+ T ++++ A N+K F
Sbjct: 101 VNGTLRLIS-AMRAANVKNF 119
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 25/140 (17%)
Query: 38 QILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKE 97
++LVTGG+G++G +LL++ D+ + + K+ P + +RL +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLP-----------VIERLGGK 50
Query: 98 VPDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAASLRFDEALQKAIRA---N 154
P F + ++ +E L +E L ++ + H A E++QK + N
Sbjct: 51 HPTF------VEGDIRNEALM----TEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNN 100
Query: 155 LYATKQMLNLAKECVNLKRF 174
+ T ++++ A N+K F
Sbjct: 101 VNGTLRLIS-AMRAANVKNF 119
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 25/140 (17%)
Query: 38 QILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKE 97
++LVTGG+G++G +LL++ D+ + + K+ P + +RL +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLP-----------VIERLGGK 50
Query: 98 VPDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAASLRFDEALQKAIRA---N 154
P F + ++ +E L +E L ++ + H A E++QK + N
Sbjct: 51 HPTF------VEGDIRNEALM----TEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNN 100
Query: 155 LYATKQMLNLAKECVNLKRF 174
+ T ++++ A N+K F
Sbjct: 101 VNGTLRLIS-AMRAANVKNF 119
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 25/140 (17%)
Query: 38 QILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKE 97
++LVTGG+G++G +LL++ D+ + + K+ P + +RL +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLP-----------VIERLGGK 50
Query: 98 VPDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAASLRFDEALQKAIRA---N 154
P F + ++ +E L +E L ++ + H A E++QK + N
Sbjct: 51 HPTF------VEGDIRNEALM----TEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNN 100
Query: 155 LYATKQMLNLAKECVNLKRF 174
+ T ++++ A N+K F
Sbjct: 101 VNGTLRLIS-AMRAANVKNF 119
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 38 QILVTGGTGFMGKLLIDKL 56
+IL+TGG GF+G L DKL
Sbjct: 29 RILITGGAGFVGSHLTDKL 47
>pdb|2VRB|A Chain A, Crystal Structure Of The Citrobacter Sp.
Triphenylmethane Reductase Complexed With Nadp(H)
Length = 287
Score = 29.6 bits (65), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSS 77
I VTG TG +G L+I LL+ P I I+ +K S+
Sbjct: 3 IAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAST 41
>pdb|2JL1|A Chain A, Structural Insight Into Bioremediation Of
Triphenylmethane Dyes By Citrobacter Sp.
Triphenylmethane Reductase
Length = 287
Score = 29.6 bits (65), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSS 77
I VTG TG +G L+I LL+ P I I+ +K S+
Sbjct: 3 IAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAST 41
>pdb|3E82|A Chain A, Crystal Structure Of A Putative Oxidoreductase From
Klebsiella Pneumoniae
pdb|3E82|B Chain B, Crystal Structure Of A Putative Oxidoreductase From
Klebsiella Pneumoniae
pdb|3E82|D Chain D, Crystal Structure Of A Putative Oxidoreductase From
Klebsiella Pneumoniae
pdb|3E82|E Chain E, Crystal Structure Of A Putative Oxidoreductase From
Klebsiella Pneumoniae
Length = 364
Score = 29.6 bits (65), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 44 GTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSV 89
G GF+GK L+RS P + ++ RD EE+VK L V
Sbjct: 14 GYGFVGKTFHAPLIRSVPGLNLAFVASRD------EEKVKRDLPDV 53
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 22/120 (18%)
Query: 12 GLLDTALPESPIMQEEQKVDDFYRDGQILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVR 71
G+L+ +L P+ G L+TG TGF+G LI+ L+ + IY +R
Sbjct: 58 GILEDSLSHRPL-------------GNTLLTGATGFLGAYLIEA-LQGYSH--RIYCFIR 101
Query: 72 DKKGSSPEERVKNMLNSVIFDRLNKE-VPDFRSKIQVIPSNLE-SEHLGLSEDSEQLIKS 129
+ EE L + + D ++E V S I+VI + E + + L E+ + +I +
Sbjct: 102 ----ADNEEIAWYKLXTNLNDYFSEETVEXXLSNIEVIVGDFECXDDVVLPENXDTIIHA 157
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of
Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus
Anthracis Str. Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of
Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus
Anthracis Str. Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of
Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus
Anthracis Str. Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of
Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus
Anthracis Str. Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of
Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus
Anthracis Str. Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of
Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus
Anthracis Str. Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of
Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus
Anthracis Str. Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of
Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus
Anthracis Str. Ames In Complex With Nad
Length = 346
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 38 QILVTGGTGFMGKLLIDKLLRSF 60
ILVTGG GF+G + L+S+
Sbjct: 26 NILVTGGAGFIGSNFVHYXLQSY 48
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 32/111 (28%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRD--KKGSSPEERVKNMLNSVIFDRLNK 96
I+VTGG GF+G ++++ D G I+V D K G+ + N+++ I D ++K
Sbjct: 49 IIVTGGAGFIGS----NIVKALNDKGITDILVVDNLKDGT----KFVNLVDLNIADYMDK 100
Query: 97 EVPDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFH---CAASLRFD 144
E DF +I + E G V IFH C+++ +D
Sbjct: 101 E--DFLIQI------MAGEEFG-----------DVEAIFHEGACSSTTEWD 132
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 38 QILVTGGTGFMGKLLIDKL 56
+I VTGGTGF+G+ +++ +
Sbjct: 4 KIAVTGGTGFLGQYVVESI 22
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-glucose 4- Epimerase Complex With Nad
Length = 311
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 38 QILVTGGTGFMGKLLIDKLL 57
++LVTGG GF+G +++ LL
Sbjct: 2 RVLVTGGAGFIGSHIVEDLL 21
>pdb|3I44|A Chain A, Crystal Structure Of Aldehyde Dehydrogenase From
Bartonella Henselae At 2.0a Resolution
Length = 497
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 62 DIGAIYIMVRD---KKGSSPEERVKNMLNSVIFDRLNKEVPDFRSKIQVIPSNLESEHLG 118
DI A+ VR G S + ++ I+D+ K D K QV P + H+G
Sbjct: 284 DIDALQRGVRHCFYNSGQSCNAPTRMLVEQAIYDKAIKTAKDIAEKTQVGPGHQTGNHIG 343
Query: 119 LSEDSEQLIK 128
EQ K
Sbjct: 344 PVVSKEQYDK 353
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Thymidine Diphosphate Bound
Length = 361
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 38 QILVTGGTGFMGKLLIDKLLRSFPD 62
+IL+TGG GF+G ++ ++++ D
Sbjct: 2 KILITGGAGFIGSAVVRHIIKNTQD 26
>pdb|1UN9|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase From C.
Freundii In Complex With Amp-Pnp And Mg2+
pdb|1UN9|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase From C.
Freundii In Complex With Amp-Pnp And Mg2+
Length = 552
Score = 27.7 bits (60), Expect = 3.2, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 51 LLIDKLLRSFPDIGAIYIMVRDKKGSSPEE 80
L++DKLL + P+ G + +M+ + G S E
Sbjct: 239 LMVDKLLAALPETGRLAVMINNLGGVSVAE 268
>pdb|1UN8|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase Of C.
Freundii (Native Form)
pdb|1UN8|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase Of C.
Freundii (Native Form)
Length = 552
Score = 27.7 bits (60), Expect = 3.2, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 51 LLIDKLLRSFPDIGAIYIMVRDKKGSSPEE 80
L++DKLL + P+ G + +M+ + G S E
Sbjct: 239 LMVDKLLAALPETGRLAVMINNLGGVSVAE 268
>pdb|3PDT|A Chain A, Crystal Structure Of The C-Terminal Truncated Alpha-Kinase
Domain Of Myosin Heavy Chain Kinase
Length = 275
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 23 IMQEEQKVDDFYRDGQILVTGGTGF----MGKLLIDKLLRS 59
I+ + Q VDD Y D QI G GF +GK I+K + +
Sbjct: 219 IVVDIQGVDDLYTDPQIHTPDGKGFGLGNLGKAGINKFITT 259
>pdb|3LKM|A Chain A, 1.6 Angstrom Crystal Structure Of The Alpha-Kinase Domain
Of Myosin Heavy Chain Kinase A Complex With Amp
pdb|3LLA|A Chain A, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Amppcp
pdb|3LLA|B Chain B, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Amppcp
Length = 307
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 23 IMQEEQKVDDFYRDGQILVTGGTGF----MGKLLIDKLLRS 59
I+ + Q VDD Y D QI G GF +GK I+K + +
Sbjct: 219 IVVDIQGVDDLYTDPQIHTPDGKGFGLGNLGKAGINKFITT 259
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 30/132 (22%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRD--KKGSSPEERVKNMLNSVIFDRLNK 96
I+VTGG GF+G ++++ D G I+V D K G+ + N+++ I D ++K
Sbjct: 2 IIVTGGAGFIGS----NIVKALNDKGITDILVVDNLKDGT----KFVNLVDLNIADYMDK 53
Query: 97 EVPDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAASLRFDEALQKAIRANLY 156
E DF +I + E G V IFH A E K + N Y
Sbjct: 54 E--DFLIQI------MAGEEFG-----------DVEAIFHEGAXSSTTEWDGKYMMDNNY 94
Query: 157 A-TKQMLNLAKE 167
+K++L+ E
Sbjct: 95 QYSKELLHYCLE 106
>pdb|2FSG|A Chain A, Complex Seca:atp From Escherichia Coli
pdb|2FSG|B Chain B, Complex Seca:atp From Escherichia Coli
Length = 853
Score = 27.7 bits (60), Expect = 3.7, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 70 VRDKKGSSPEERVKNMLNSVIFDRLNKEVPDFRSKIQVIPSNLESEHLGLSEDSEQLIKS 129
+RD SPEERV+ L+ + D ++ + D ++ +I S G +EDS + K
Sbjct: 179 LRDNXAFSPEERVQRKLHYALVDEVDSILID-EARTPLIIS-------GPAEDSSEXYKR 230
Query: 130 KVNIIFH 136
II H
Sbjct: 231 VNKIIPH 237
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 38 QILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDK 73
+IL+TGG GF+G L+ ++ D ++V DK
Sbjct: 3 KILITGGAGFIGSALVRYIINETSDA----VVVVDK 34
>pdb|2VDA|A Chain A, Solution Structure Of The Seca-Signal Peptide Complex
Length = 828
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 70 VRDKKGSSPEERVKNMLNSVIFDRLNKEVPDFRSKIQVIPSNLESEHLGLSEDSEQLIKS 129
+RD SPEERV+ L+ + D ++ + D ++ +I S G +EDS ++ K
Sbjct: 179 LRDNMAFSPEERVQRKLHYALVDEVDSILID-EARTPLIIS-------GPAEDSSEMYKR 230
Query: 130 KVNIIFHC 137
II H
Sbjct: 231 VNKIIPHL 238
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting
4,6-dehydratase In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting
4,6-dehydratase In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Gal
Length = 344
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 39 ILVTGGTGFMGKLLIDKLL 57
IL+TGGTG GK + K+L
Sbjct: 24 ILITGGTGSFGKCFVRKVL 42
>pdb|2FSF|A Chain A, Escherichia Coli Seca, The Preprotein Translocase Dimeric
Atpase
pdb|2FSF|B Chain B, Escherichia Coli Seca, The Preprotein Translocase Dimeric
Atpase
pdb|2FSH|A Chain A, Complex Seca:amp-Pnp From Escherichia Coli
pdb|2FSH|B Chain B, Complex Seca:amp-Pnp From Escherichia Coli
pdb|2FSI|A Chain A, Complex Seca:adp From Escherichia Coli
pdb|2FSI|B Chain B, Complex Seca:adp From Escherichia Coli
Length = 853
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 70 VRDKKGSSPEERVKNMLNSVIFDRLNKEVPDFRSKIQVIPSNLESEHLGLSEDSEQLIKS 129
+RD SPEERV+ L+ + D ++ + D ++ +I S G +EDS ++ K
Sbjct: 179 LRDNMAFSPEERVQRKLHYALVDEVDSILID-EARTPLIIS-------GPAEDSSEMYKR 230
Query: 130 KVNIIFHC 137
II H
Sbjct: 231 VNKIIPHL 238
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 30 VDDFYRDGQILVTGGTGFMGKLLIDKLLRSFP 61
+DD + IL+TGG GF+G L + P
Sbjct: 4 IDDELENQTILITGGAGFVGSNLAFHFQENHP 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,203,198
Number of Sequences: 62578
Number of extensions: 206778
Number of successful extensions: 646
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 618
Number of HSP's gapped (non-prelim): 76
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)