RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17489
(177 letters)
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 129 bits (326), Expect = 4e-36
Identities = 33/162 (20%), Positives = 65/162 (40%), Gaps = 2/162 (1%)
Query: 13 LLDTALPESPIMQEEQKVDDFYRDGQILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRD 72
LD + + +L+TG TGF+G+ L+ +LLR G + +VR
Sbjct: 50 TLDRFIDADTLATAVNLPGPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRA 109
Query: 73 KKGSSPEERVKNMLNSVIFDRLNKEVPDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVN 132
+ R++ +S + L +++V+ + LGL + + + V+
Sbjct: 110 ESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVD 169
Query: 133 IIFHCAASLRFDEALQKAIRANLYATKQMLNLAKECVNLKRF 174
+I AA + + N+ T +++ +A LK F
Sbjct: 170 LIVDSAAMVNAFPYHE-LFGPNVAGTAELIRIALTT-KLKPF 209
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 52.8 bits (127), Expect = 8e-09
Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 28/134 (20%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEV 98
I + G G +G+ L +L++ G P E+ + D E
Sbjct: 17 IAIIGAAGMVGRKLTQRLVK------------DGSLGGKPVEKF------TLIDVFQPEA 58
Query: 99 PDFRSKIQVIPSNLESEHLGLS--EDSEQLIKSKVNIIFHCAASL--RFDEALQKAIRAN 154
P +++ LS ++E+L++++ ++IFH AA + + K R N
Sbjct: 59 PA------GFSGAVDARAADLSAPGEAEKLVEARPDVIFHLAAIVSGEAELDFDKGYRIN 112
Query: 155 LYATKQMLNLAKEC 168
L T+ + + +
Sbjct: 113 LDGTRYLFDAIRIA 126
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 49.6 bits (119), Expect = 1e-07
Identities = 17/141 (12%), Positives = 39/141 (27%), Gaps = 38/141 (26%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIG-AIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKE 97
V G TG +G + + G + ++ R SS +R+ +
Sbjct: 16 YAVLGATGLLGHHAARAIRAA----GHDLVLIHRP---SSQIQRLAYL------------ 56
Query: 98 VPDFRSKIQVIPSNLESEHLGLSEDSEQLIK--SKVNIIFHCAASLRFDEAL-QKAIRAN 154
+ + + + D L + ++ + A Q+ + +
Sbjct: 57 ------EPECRVAEML--------DHAGLERALRGLDGVIFSAGYYPSRPRRWQEEVASA 102
Query: 155 LYATKQMLNLAKECVNLKRFC 175
L T + + R
Sbjct: 103 LGQTNPFYAACLQA-RVPRIL 122
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 48.1 bits (115), Expect = 3e-07
Identities = 24/141 (17%), Positives = 52/141 (36%), Gaps = 40/141 (28%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEV 98
ILVTG +G +G L+ L + +VI + +
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGK------------------------KNVIASDIVQRD 37
Query: 99 PDFRSKIQVIPSNLESEHLGLS--EDSEQLIKS-KVNIIFHCAA--SLRFDEALQKAIRA 153
++ L +S ++ ++ ++ ++ IFH A S + ++ A +
Sbjct: 38 TG----------GIKFITLDVSNRDEIDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKV 87
Query: 154 NLYATKQMLNLAKECVNLKRF 174
N+ T +L AK+ +++
Sbjct: 88 NMNGTYNILEAAKQH-RVEKV 107
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 44.5 bits (106), Expect = 4e-06
Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 30/132 (22%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEV 98
I+VTGG GF+G ++ L G I+V D + N+++ I D ++KE
Sbjct: 2 IIVTGGAGFIGSNIVKALNDK----GITDILVVDNLKDG--TKFVNLVDLNIADYMDKE- 54
Query: 99 PDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAA---SLRFDEALQKAIRANL 155
DF +I V IFH A + +D + + N
Sbjct: 55 -DFLIQIMA-----------------GEEFGDVEAIFHEGACSSTTEWDG--KYMMDNNY 94
Query: 156 YATKQMLNLAKE 167
+K++L+ E
Sbjct: 95 QYSKELLHYCLE 106
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 44.6 bits (106), Expect = 4e-06
Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 17/132 (12%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEV 98
IL+TGG GF+G L + P ++V DK S+ N S + N
Sbjct: 13 ILITGGAGFVGSNLAFHFQENHPK---AKVVVLDKFRSN--TLFSNNRPSSLGHFKNLIG 67
Query: 99 PDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAA--SLRFDEALQKAIRANLY 156
VI +++ + D +L K + +FH AA + ++ N
Sbjct: 68 FKGE----VIAADINNP-----LDLRRLEKLHFDYLFHQAAVSDTTMLNQ-ELVMKTNYQ 117
Query: 157 ATKQMLNLAKEC 168
A +L +A+
Sbjct: 118 AFLNLLEIARSK 129
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 44.6 bits (106), Expect = 5e-06
Identities = 34/151 (22%), Positives = 56/151 (37%), Gaps = 32/151 (21%)
Query: 20 ESPIMQEEQKVDDFYRDGQILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPE 79
+SP + I+VTGG GF+G ++ L D G I+V D
Sbjct: 32 DSPDLGTGG--GSGIEGRMIIVTGGAGFIGSNIVKALN----DKGITDILVVDNLKDG-- 83
Query: 80 ERVKNMLNSVIFDRLNKEVPDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAA 139
+ N+++ I D ++KE DF +I V IFH A
Sbjct: 84 TKFVNLVDLNIADYMDKE--DFLIQIMA-----------------GEEFGDVEAIFHEGA 124
Query: 140 ---SLRFDEALQKAIRANLYATKQMLNLAKE 167
+ +D + + N +K++L+ E
Sbjct: 125 CSSTTEWDG--KYMMDNNYQYSKELLHYCLE 153
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 43.4 bits (103), Expect = 1e-05
Identities = 28/158 (17%), Positives = 55/158 (34%), Gaps = 37/158 (23%)
Query: 20 ESPIMQEEQKVDDFYRDGQILVTGGTGFMGKLLIDKLL-RSFPDIGAIYIMVRDKKGSSP 78
++ ++ E V LVTG GF+ ++++LL + G R S
Sbjct: 4 DNAVLPEGSLV---------LVTGANGFVASHVVEQLLEHGYKVRGT----ARSA---SK 47
Query: 79 EERVKNMLNSVIFDRLNKE-VPDFRSKIQVIPSNLESEHLGLSEDS-EQLIKSKVNIIFH 136
++ ++ R V D L + + +++IK + H
Sbjct: 48 LANLQKRWDAKYPGRFETAVVEDM-----------------LKQGAYDEVIK-GAAGVAH 89
Query: 137 CAASLRFDEALQKAIRANLYATKQMLNLAKECVNLKRF 174
A+ + F + + + T L A ++KRF
Sbjct: 90 IASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRF 127
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 42.3 bits (100), Expect = 3e-05
Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 33/139 (23%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEV 98
IL+ G G +G L KL + G ++ D + + + +NS F+ +N
Sbjct: 5 ILIIGACGQIGTELTQKLRK---LYGTENVIASDIRKLNTDV-----VNSGPFEVVN--A 54
Query: 99 PDFRSKIQVIPSNLESEHLGLSEDSEQLIKS-KVNIIFHCAA--SLRFDEALQKAIRANL 155
DF E L++ K+ I+ AA S ++ A N+
Sbjct: 55 LDF-------------------NQIEHLVEVHKITDIYLMAALLSATAEKNPAFAWDLNM 95
Query: 156 YATKQMLNLAKECVNLKRF 174
+ +LNLAK +K+
Sbjct: 96 NSLFHVLNLAKAK-KIKKI 113
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad,
SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A
{Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A*
2gna_A*
Length = 344
Score = 39.9 bits (94), Expect = 2e-04
Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 28/110 (25%)
Query: 32 DFYRDGQILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIF 91
+ + IL+TGGTG GK + K+L + + I + RD E + M
Sbjct: 17 NMLDNQTILITGGTGSFGKCFVRKVLDTT-NAKKIIVYSRD------ELKQSEMAMEFND 69
Query: 92 DRLNKEVPDFRSKIQVIPSNLESEHLGLSEDSEQLIKS--KVNIIFHCAA 139
R+ + D R D E+L + V+I H AA
Sbjct: 70 PRMRFFIGDVR-------------------DLERLNYALEGVDICIHAAA 100
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 39.4 bits (92), Expect = 2e-04
Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVI-FDRLNKE 97
+ + G +G G++L+ ++L + ++ R +K + EE KN+ V+ F++L+
Sbjct: 21 VFILGASGETGRVLLKEILEQ-GLFSKVTLIGR-RKLTFDEEAYKNVNQEVVDFEKLDDY 78
Query: 98 VPDFR 102
F+
Sbjct: 79 ASAFQ 83
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 38.9 bits (91), Expect = 5e-04
Identities = 27/173 (15%), Positives = 58/173 (33%), Gaps = 39/173 (22%)
Query: 15 DTALPESPIMQEEQKVDDFYRDGQILVTGGTGFMGKLLIDKLLRSFP------DIG--AI 66
DT L I E+++ + LV GG G +G+ + ++ + P DI +
Sbjct: 14 DTELFHQDINANEKELQSVVSQSRFLVLGGAGSIGQAVTKEIFKRNPQKLHVVDISENNM 73
Query: 67 YIMVRDKKGSSPEERVKNMLNSVIFDRLNKEVPDFRSKIQVIPSNLESEHLGLSEDSEQL 126
+VRD + Q ++ S D+
Sbjct: 74 VELVRD---------------------IRSSFGYINGDFQTFALDIGSIEY----DAFIK 108
Query: 127 IKSKVNIIFHCAA-----SLRFDEALQKAIRANLYATKQMLNLAKECVNLKRF 174
+ + + + +A S + L + I N++ T + + + + K++
Sbjct: 109 ADGQYDYVLNLSALKHVRSEKDPFTLMRMIDVNVFNTDKTIQQSIDA-GAKKY 160
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 38.8 bits (90), Expect = 5e-04
Identities = 23/129 (17%), Positives = 36/129 (27%), Gaps = 49/129 (37%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEV 98
I++TG GF+GK L L +I R KE
Sbjct: 3 IVITGAKGFVGKNLKADLT----STTDHHI--------------------FEVHRQTKE- 37
Query: 99 PDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAASLRFDEALQKAIRANLYAT 158
E+ E + K + I H A R E ++ N+
Sbjct: 38 ----------------------EELESALL-KADFIVHLAGVNRP-EHDKEFSLGNVSYL 73
Query: 159 KQMLNLAKE 167
+L++
Sbjct: 74 DHVLDILTR 82
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 38.1 bits (89), Expect = 6e-04
Identities = 15/138 (10%), Positives = 42/138 (30%), Gaps = 39/138 (28%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEV 98
+LVTG G +G+++ ++L + + D +
Sbjct: 6 LLVTGAAGQLGRVMRERLAPMAEIL-------------------------RLADLSP--L 38
Query: 99 PDFRSKIQVIPSNLESEHLGLSEDSEQLIK--SKVNIIFHCAASLRFDEALQKAIRANLY 156
+ + +L D+ + + + I H + ++ ++ ++ N+
Sbjct: 39 DPAGPNEECVQCDL--------ADANAVNAMVAGCDGIVHLGG-ISVEKPFEQILQGNII 89
Query: 157 ATKQMLNLAKECVNLKRF 174
+ A+ R
Sbjct: 90 GLYNLYEAARAH-GQPRI 106
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 37.9 bits (89), Expect = 8e-04
Identities = 26/138 (18%), Positives = 45/138 (32%), Gaps = 40/138 (28%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRL--NK 96
I VTGGTGF+G+ +++ + G +I R NK
Sbjct: 5 IAVTGGTGFLGQYVVESIK---------------NDG----NTP------IILTRSIGNK 39
Query: 97 EVPDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAASLRFDEALQKAIRANLY 156
+ D+ S+ E L + V+ + H AA+ + N
Sbjct: 40 AINDYE----YRVSDYTLEDL-------INQLNDVDAVVHLAATRGSQGKI-SEFHDNEI 87
Query: 157 ATKQMLNLAKECVNLKRF 174
T+ + + E N+
Sbjct: 88 LTQNLYDACYEN-NISNI 104
>1xq6_A Unknown protein; structural genomics, protein structure
initiative, CESG, AT5G02240, NADP, center for
eukaryotic structural genomics; HET: NAP; 1.80A
{Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A*
2q46_A* 2q4b_A*
Length = 253
Score = 37.1 bits (86), Expect = 0.001
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRD 72
+LVTG +G G+++ KL +VR
Sbjct: 7 VLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRS 39
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 37.4 bits (87), Expect = 0.001
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 20/75 (26%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIG-AIYIMVRDKKGS-----SPEERVKNMLNSV--- 89
+ +TG G +G+ L +L G + +VR + P ++L+
Sbjct: 150 VAITGSRGLVGRALTAQLQTG----GHEVIQLVRKEPKPGKRFWDPLNPASDLLDGADVL 205
Query: 90 -------IFDRLNKE 97
IF R N
Sbjct: 206 VHLAGEPIFGRFNDS 220
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 37.3 bits (87), Expect = 0.002
Identities = 28/166 (16%), Positives = 52/166 (31%), Gaps = 35/166 (21%)
Query: 12 GLLDTALPESPIMQEEQKVDDFYRDGQILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVR 71
GL+ IM + + ++V GG GF+G L+ +LL G + V
Sbjct: 13 GLVPRGSHMPVIMNASK-----LANTNVMVVGGAGFVGSNLVKRLLEL----GVNQVHVV 63
Query: 72 DKKGSSPEERVKNMLNSVIFDRLNKEVPDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKV 131
D S+ + V + +V F + ++ +
Sbjct: 64 DNLLSAEKINVPD-HPAVRFSET-----SITDDALLAS-----------------LQDEY 100
Query: 132 NIIFHCAASLRFDEALQ---KAIRANLYATKQMLNLAKECVNLKRF 174
+ +FH A ++ N T ++ K LK+
Sbjct: 101 DYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKV 146
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 36.9 bits (86), Expect = 0.002
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRD 72
I++TG TG +G + ++ + + I +I VR+
Sbjct: 3 IMLTGATGHLGTHITNQAIAN--HIDHFHIGVRN 34
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin C,
SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 36.2 bits (84), Expect = 0.004
Identities = 23/142 (16%), Positives = 45/142 (31%), Gaps = 39/142 (27%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEV 98
I +TG GF+ + +L G I K E + + F ++ V
Sbjct: 32 ISITGAGGFIASHIARRLKHE----GHYVIASDWK----KNEHMTEDMFCDEFHLVDLRV 83
Query: 99 PDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAA------SLRFDEALQKAIR 152
+ K+ V+ +F+ AA ++ + + +
Sbjct: 84 MENCLKVTE----------------------GVDHVFNLAADMGGMGFIQSNHS--VIMY 119
Query: 153 ANLYATKQMLNLAKECVNLKRF 174
N + M+ A+ +KRF
Sbjct: 120 NNTMISFNMIEAARI-NGIKRF 140
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 36.1 bits (83), Expect = 0.004
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 39 ILVTGGTGFMGKLLIDKLLRS-FPDIGAIYIMVRDKKGSSPE 79
+L+ GGTG++GK +++ + P Y++ R + S+ +
Sbjct: 7 VLIVGGTGYIGKRIVNASISLGHP----TYVLFRPEVVSNID 44
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 35.7 bits (83), Expect = 0.004
Identities = 25/144 (17%), Positives = 48/144 (33%), Gaps = 43/144 (29%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLN--- 95
+ +TG G +G + + LL ++G ++V V D
Sbjct: 24 VFITGICGQIGSHIAELLL---------------ERG----DKV------VGIDNFATGR 58
Query: 96 ----KEVPDFRSKIQVIPSNLESEHLGLSEDSEQLIKS-KVNIIFHCAASLRFDEALQKA 150
K+ P+ + ++ QLI + + + H AAS + +
Sbjct: 59 REHLKDHPNLT----FVEGSIADH-----ALVNQLIGDLQPDAVVHTAASYKDPDDWYND 109
Query: 151 IRANLYATKQMLNLAKECVNLKRF 174
N ++ AK+ N+ RF
Sbjct: 110 TLTNCVGGSNVVQAAKKN-NVGRF 132
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 35.8 bits (83), Expect = 0.004
Identities = 17/138 (12%), Positives = 40/138 (28%), Gaps = 39/138 (28%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEV 98
+LVTG G +G + L V + D ++ +
Sbjct: 5 LLVTGAAGGVGSAIRPHLG---------------TLA----HEV------RLSDIVD--L 37
Query: 99 PDFRSKIQVIPSNLESEHLGLSEDSEQLIK--SKVNIIFHCAASLRFDEALQKAIRANLY 156
+ +++ +L D++ + + I H + + ++AN+
Sbjct: 38 GAAEAHEEIVACDL--------ADAQAVHDLVKDCDGIIHLGG-VSVERPWNDILQANII 88
Query: 157 ATKQMLNLAKECVNLKRF 174
+ A+ R
Sbjct: 89 GAYNLYEAARNL-GKPRI 105
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 35.6 bits (82), Expect = 0.004
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVK 83
IL+ G TG++G+ + L +++VR+ SS E+ +
Sbjct: 7 ILLIGATGYIGRHVAKASLDLGHP---TFLLVRESTASSNSEKAQ 48
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 35.7 bits (83), Expect = 0.004
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFP--DIGAIYIMVRD 72
I +TG TG +G +I+ L+++ P I A +VR+
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQIVA---IVRN 34
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 35.3 bits (81), Expect = 0.005
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 39 ILVTGGTGFMGKLLIDKLLR 58
I + G TG G ++++
Sbjct: 3 IGIIGATGRAGSRILEEAKN 22
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula
dsm 2008} PDB: 3r14_A*
Length = 221
Score = 35.0 bits (80), Expect = 0.006
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKN 84
I + G G + + L LL D+ I + R K P E + +
Sbjct: 8 ITILGAAGQIAQXLTATLLTY-TDM-HITLYGRQLKTRIPPEIIDH 51
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.007
Identities = 24/141 (17%), Positives = 51/141 (36%), Gaps = 24/141 (17%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEV 98
+LV + F+ L ++ + P+ + D + ++P E V L V +V
Sbjct: 20 LLVPTASFFIASQLQEQFNKILPEPTEGFA--ADDEPTTPAELVGKFLGYVSSLVEPSKV 77
Query: 99 PDFRSKIQVIPSNLESEHLG----------LSEDSEQLIKSKVNII---FH-CAASLRFD 144
F + + + E+ +L L ++++ + +I + R
Sbjct: 78 GQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPF 137
Query: 145 E-----ALQKAIR---ANLYA 157
+ AL +A+ A L A
Sbjct: 138 DKKSNSALFRAVGEGNAQLVA 158
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET:
NDP; 1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 35.0 bits (80), Expect = 0.007
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 39 ILVTGGTGFMGKLLIDKLLR 58
I V G TG G ++ + R
Sbjct: 3 IAVLGATGRAGSAIVAEARR 22
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 34.8 bits (81), Expect = 0.008
Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 38/140 (27%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEV 98
I+VTGG GF+G L+DKL+ + G V V+ D
Sbjct: 3 IVVTGGAGFIGSHLVDKLV---------------ELG----YEV------VVVD------ 31
Query: 99 PDFRS-KIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAASLRFDEALQ---KAIRAN 154
+ S + + + + E L D K +++FH AA+ + N
Sbjct: 32 -NLSSGRREFVNPSAELHVRDLK-DYSWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNEN 89
Query: 155 LYATKQMLNLAKECVNLKRF 174
+ AT +L A++ ++
Sbjct: 90 VVATFNVLEWARQT-GVRTV 108
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 35.1 bits (80), Expect = 0.008
Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 34/141 (24%)
Query: 40 LVTGGTGFMGKLLIDKLLRSFPDIGA--IYIMVRDKKGSSPEERVKNMLNSVIFDRLNKE 97
L+ G TG +G L + L + G +Y + R + + E
Sbjct: 5 LIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHE------------------ 46
Query: 98 VPDFRSKIQVIPSNLESEHLGLSEDSEQLIKS--KVNIIFHCAASLRFDEALQKAIRANL 155
+ I + ++ +DS+ + V +F+ + R E AN
Sbjct: 47 ----DNPINYVQCDISD-----PDDSQAKLSPLTDVTHVFYVTWANRSTEQEN--CEANS 95
Query: 156 YATKQMLN-LAKECVNLKRFC 175
+ +L+ + C NLK
Sbjct: 96 KMFRNVLDAVIPNCPNLKHIS 116
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 34.6 bits (80), Expect = 0.009
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSP 78
+L+ G TG G+ L+D++L P + + R P
Sbjct: 8 VLLAGATGLTGEHLLDRILSE-PTLAKVIAPARKALAEHP 46
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 34.6 bits (80), Expect = 0.010
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFP--DIGAIYIMVRD-KKGSSPEER 81
I VTG TG +G L+I LL+ P I AI VR+ +K S+ ++
Sbjct: 3 IAVTGATGQLGGLVIQHLLKKVPASQIIAI---VRNVEKASTLADQ 45
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 34.3 bits (79), Expect = 0.012
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 39 ILVTGGTGFMGKLLIDKLLR 58
I++ G +GF+G L+++ L
Sbjct: 7 IVLIGASGFVGSALLNEALN 26
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 34.6 bits (80), Expect = 0.012
Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 35/145 (24%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLN--- 95
L+TG GF+G L++ LL K ++V V D
Sbjct: 30 WLITGVAGFIGSNLLETLL---------------KLD----QKV------VGLDNFATGH 64
Query: 96 -KEVPDFRSKIQVIPSNLESEHLGLSEDSEQLIK--SKVNIIFHCAASLRFDEALQ---K 149
+ + + RS + + G + + + V+ + H AA ++
Sbjct: 65 QRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPIT 124
Query: 150 AIRANLYATKQMLNLAKECVNLKRF 174
+ N+ ML A++ ++ F
Sbjct: 125 SNATNIDGFLNMLIAARDA-KVQSF 148
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 34.1 bits (78), Expect = 0.015
Identities = 11/51 (21%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 39 ILVTGGTGFMGKLLIDKLLRS-FPDIGAIYIMVRDKKGSSPEERVKNMLNS 88
IL+ G TG +G+ ++ +++ P Y +VR ++ E + ++++
Sbjct: 5 ILILGPTGAIGRHIVWASIKAGNP----TYALVRKTITAANPETKEELIDN 51
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short
chain dehydrogenase reductase, flavonoi oxidoreductase;
HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A*
3i6q_A*
Length = 346
Score = 34.2 bits (78), Expect = 0.015
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNS 88
+L+ G TGF+G+ + L + YI+ R S + ++ L
Sbjct: 13 VLIAGATGFIGQFVATASLDAHRP---TYILARPGPRSPSKAKIFKALED 59
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP;
1.80A {Clarkia breweri}
Length = 321
Score = 33.8 bits (77), Expect = 0.019
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 39 ILVTGGTGFMGKLLIDKLLRS-FPDIGAIYIMVRDKKGSSPEERVK 83
I++ GGTG++GK ++ L P +I R S V+
Sbjct: 7 IIIYGGTGYIGKFMVRASLSFSHP----TFIYARPLTPDSTPSSVQ 48
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase,
structural genomics, STRU genomics consortium, SGC,
lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP:
c.2.1.2 PDB: 4ef7_A*
Length = 343
Score = 33.9 bits (78), Expect = 0.020
Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 33/134 (24%)
Query: 38 QILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKE 97
+IL+TGG GF+G L DKL+ + V D + + V++ +
Sbjct: 29 RILITGGAGFVGSHLTDKLMMD-----GHEVTVVDNFFTGRKRNVEHWIGH--------- 74
Query: 98 VPDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFH--CAASLRFDEALQ-KAIRAN 154
+F +I H D + + +V+ I+H AS K ++ N
Sbjct: 75 -ENFE----LI------NH-----DVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTN 118
Query: 155 LYATKQMLNLAKEC 168
T ML LAK
Sbjct: 119 TIGTLNMLGLAKRV 132
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia
pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Length = 357
Score = 33.7 bits (77), Expect = 0.023
Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 31/112 (27%)
Query: 32 DFYRDGQILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSP----EERVKNMLN 87
F++ ++ VTG TGF G L L +GA + P RV + +
Sbjct: 5 SFWQGKRVFVTGHTGFKGGWLSLWLQT----MGATVKGYSLTAPTVPSLFETARVADGMQ 60
Query: 88 SVIFDRLNKEVPDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAA 139
S I D ++ I+ + + I+FH AA
Sbjct: 61 SEIGDIRDQN--KLLESIR---------------------EFQPEIVFHMAA 89
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 33.4 bits (77), Expect = 0.024
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 39 ILVTGGTGFMGKLLIDKLLR 58
I + G TG +GK L+ L
Sbjct: 3 IFIVGSTGRVGKSLLKSLST 22
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid,
plant protein; 1.40A {Medicago sativa}
Length = 322
Score = 33.4 bits (77), Expect = 0.026
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 37 GQILVTGGTGFMGKLLIDKLL 57
G++ VTGGTGF+G +I LL
Sbjct: 2 GRVCVTGGTGFLGSWIIKSLL 22
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 33.2 bits (76), Expect = 0.029
Identities = 15/133 (11%), Positives = 42/133 (31%), Gaps = 30/133 (22%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEV 98
+L+ G GF+G L ++L + + D + + VK+
Sbjct: 27 VLILGVNGFIGHHLSKRILET----TDWEVFGMDMQTDRLGDLVKH-------------- 68
Query: 99 PDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFH--CAAS-LRFDEALQKAIRANL 155
++ ++++ + K ++I A+ + + + +
Sbjct: 69 ERMH----FFEGDIT-----INKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDF 119
Query: 156 YATKQMLNLAKEC 168
A ++ A +
Sbjct: 120 EANLPIVRSAVKY 132
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 33.0 bits (76), Expect = 0.032
Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 41/148 (27%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLN--- 95
L+TG GF+G L++KLL K + V + D +
Sbjct: 28 WLITGVAGFIGSNLLEKLL---------------KLN----QVV------IGLDNFSTGH 62
Query: 96 -KEVPDFRSKIQVIPSNLESEHLGLSEDSEQLIK--SKVNIIFHCAA------SLRFDEA 146
+ + ++ + + G D + V+ + H AA S+
Sbjct: 63 QYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSI---VD 119
Query: 147 LQKAIRANLYATKQMLNLAKECVNLKRF 174
N+ +L+ AK ++ F
Sbjct: 120 PITTNATNITGFLNILHAAKNA-QVQSF 146
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural
genomics, APC7755, NADP, P protein structure
initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 32.7 bits (75), Expect = 0.034
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 38 QILVTGGTGFMGKLLIDKLLR 58
++LV G G + + L+ +L
Sbjct: 23 RVLVVGANGKVARYLLSELKN 43
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 33.1 bits (76), Expect = 0.038
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 39 ILVTGGTGFMGKLLIDKLLR 58
+L+ G GF+G L ++LLR
Sbjct: 3 VLILGVNGFIGNHLTERLLR 22
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 32.6 bits (75), Expect = 0.052
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 39 ILVTGGTGFMGKLLIDKLL 57
V GGTGF+ LL+ LL
Sbjct: 12 ACVVGGTGFVASLLVKLLL 30
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 32.5 bits (74), Expect = 0.054
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 39 ILVTGGTGFMGKLLIDKLL 57
+L+ G G + + +I++L
Sbjct: 26 VLILGAGGQIARHVINQLA 44
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM
degradation, flavin reductase, diaphorase, green HAEM
binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP:
c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 32.3 bits (74), Expect = 0.055
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 39 ILVTGGTGFMGKLLIDKLLR 58
I + G TG G + + ++
Sbjct: 6 IAIFGATGQTGLTTLAQAVQ 25
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Length = 124
Score = 31.2 bits (71), Expect = 0.066
Identities = 20/110 (18%), Positives = 44/110 (40%), Gaps = 12/110 (10%)
Query: 6 GTSLFGGLLDTALPESPIMQEEQKVDDFYRDGQILVTGGTGFMGKLLIDKLLRSFPDIGA 65
G+S G + + L ++ E + +DDFY+ + F G ++K + A
Sbjct: 1 GSSGSSGTVASRLSDTKAAGEVKALDDFYK--MLQHEPDRAFYGLKQVEKAN----EAMA 54
Query: 66 I-YIMVRDKKGSSPEERVKNMLNSVIFDRLNKEVPDFRSKIQVIPSNLES 114
I +++ D+ + ++ + RL V + +++ S S
Sbjct: 55 IDTLLISDELFRHQDVATRSR-----YVRLVDSVKENAGTVRIFSSLHVS 99
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 32.2 bits (73), Expect = 0.068
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 39 ILVTGGTGFMGKLLIDKLLRS-FPDIGAIYIMVRDKKGSSP 78
IL+ GGTG++G ++ L+ P Y+ R +
Sbjct: 14 ILIFGGTGYIGNHMVKGSLKLGHP----TYVFTRPNSSKTT 50
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 32.2 bits (74), Expect = 0.076
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDI 63
+L+TGG GF+G L L D+
Sbjct: 4 LLITGGCGFLGSNLASFALSQGIDL 28
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.077
Identities = 21/141 (14%), Positives = 40/141 (28%), Gaps = 60/141 (42%)
Query: 51 LLI-D-----KLLRSFPDIGA-IYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEVPDFRS 103
LL+ K +F ++ I + R K +V DF S
Sbjct: 247 LLVLLNVQNAKAWNAF-NLSCKILLTTRFK-----------------------QVTDFLS 282
Query: 104 KIQVIPSNLESEHLGLSED-SEQLIKSKVNIIFH----------------CAASL----- 141
+L+ + L+ D + L+ ++ A S+
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 142 RFD-------EALQKAIRANL 155
+D + L I ++L
Sbjct: 343 TWDNWKHVNCDKLTTIIESSL 363
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 31.8 bits (73), Expect = 0.086
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 39 ILVTGGTGFMGKLLIDKLL 57
+ VTG +GF+G L+ +LL
Sbjct: 8 VCVTGASGFIGSWLVMRLL 26
>2hvm_A Hevamine; hydrolase, chitinase/lysozyme; 1.80A {Hevea brasiliensis}
SCOP: c.1.8.5 PDB: 1hvq_A* 1llo_A 1kr0_A* 1kr1_A*
1kqy_A* 1kqz_A*
Length = 273
Score = 32.0 bits (72), Expect = 0.087
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 42 TGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLN 95
G T + L + L ++ G + + P+ + LN+ +FD +
Sbjct: 128 HGSTLYWDDLA--RYLSAYSKQGKKVYLTAAPQCPFPDRYLGTALNTGLFDYVW 179
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 31.0 bits (71), Expect = 0.17
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 39 ILVTGGTGFMGKLLIDKLLR 58
IL+TGG GF+G L L+
Sbjct: 10 ILITGGAGFIGGHLARALVA 29
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha,
beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus
tokodaii}
Length = 273
Score = 31.0 bits (71), Expect = 0.17
Identities = 18/133 (13%), Positives = 42/133 (31%), Gaps = 43/133 (32%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEV 98
L+TG +G +G +L R + + + + +
Sbjct: 3 TLITGASGQLGI----ELSRLLSERHEVIKVYNSSEIQGGYKL----------------- 41
Query: 99 PDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAASLRFDEA---LQKAIRANL 155
D ++ + +IK + ++I + AA D+ +KA + N
Sbjct: 42 -DLTDFPRL---------------EDFIIKKRPDVIINAAAMTDVDKCEIEKEKAYKINA 85
Query: 156 YATKQMLNLAKEC 168
A + ++ +
Sbjct: 86 EAVR---HIVRAG 95
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX
NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB:
1ker_A* 1ket_A* 1kep_A*
Length = 348
Score = 31.0 bits (71), Expect = 0.18
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDK 73
I+VTGG GF+G + + + PD +++ V DK
Sbjct: 7 IIVTGGAGFIGSNFVHYVYNNHPD---VHVTVLDK 38
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold,
structural genomics, NPPSFA; HET: NAD; 2.07A
{Pyrococcus horikoshii}
Length = 336
Score = 30.9 bits (71), Expect = 0.20
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDK 73
+LVTGG GF+G I +L PD ++ DK
Sbjct: 6 LLVTGGMGFIGSNFIRYILEKHPD---WEVINIDK 37
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 30.4 bits (69), Expect = 0.22
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRD 72
++V GGTG G + LL + ++ R+
Sbjct: 8 VVVFGGTGAQGGSVARTLLED--GTFKVRVVTRN 39
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for
structural genomics of infectio diseases, csgid, niaid;
HET: NAD SUC; 3.00A {Bacillus anthracis}
Length = 346
Score = 30.6 bits (70), Expect = 0.24
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDI 63
ILVTGG GF+G + +L+S+
Sbjct: 27 ILVTGGAGFIGSNFVHYMLQSYETY 51
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd
reductase, NADP binding; 1.40A {Emericella nidulans}
SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A*
2vus_A 2vut_A* 2vuu_A*
Length = 352
Score = 30.2 bits (68), Expect = 0.33
Identities = 8/21 (38%), Positives = 8/21 (38%)
Query: 39 ILVTGGTGFMGKLLIDKLLRS 59
I V G TG G LI
Sbjct: 8 IAVVGATGRQGASLIRVAAAV 28
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; HET: NAD; 1.87A {Archaeoglobus
fulgidus}
Length = 313
Score = 30.2 bits (69), Expect = 0.35
Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 44/143 (30%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRL---N 95
I+VTGG GF+G ++DKL + V+ D L N
Sbjct: 4 IVVTGGAGFIGSHVVDKLSE--------------------SNEI------VVIDNLSSGN 37
Query: 96 KE-VPDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAASLRFDEALQ---KAI 151
+E V + +++ ++L ++D + +K ++H AA+ + +
Sbjct: 38 EEFVNE---AARLVKADL------AADDIKDYLK-GAEEVWHIAANPDVRIGAENPDEIY 87
Query: 152 RANLYATKQMLNLAKECVNLKRF 174
R N+ AT ++L ++ + R
Sbjct: 88 RNNVLATYRLLEAMRKA-GVSRI 109
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase;
2.25A {Homo sapiens} PDB: 2ydx_A
Length = 315
Score = 29.9 bits (68), Expect = 0.42
Identities = 27/134 (20%), Positives = 44/134 (32%), Gaps = 44/134 (32%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEV 98
+LVTG TG +G+ + + F + ++ E+V
Sbjct: 5 VLVTGATGLLGR----AVHKEFQQNNWHAVGCGFRRARPKFEQV---------------- 44
Query: 99 PDFRSKIQVIPSNLESEHLGLSEDSEQLIKS-KVNIIFHCAASLRFDEA---LQKAIRAN 154
+ V +I + ++I HCAA R D A + N
Sbjct: 45 -NLLDSNAV----------------HHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLN 87
Query: 155 LYATKQMLNLAKEC 168
+ A+ NLAKE
Sbjct: 88 VDASG---NLAKEA 98
>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain
dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A
{Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*
Length = 337
Score = 29.8 bits (68), Expect = 0.42
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 17/48 (35%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYI--MVRDKKGSSPEERVKN 84
+LVTGG GF IG+ ++ ++ P + V
Sbjct: 3 LLVTGGAGF---------------IGSHFVRQLLAGAYPDVPADEVIV 35
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 29.0 bits (65), Expect = 0.76
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 36 DGQILVTGGTGFMGKLL 52
G +L+TGG G +G+ L
Sbjct: 259 SGTVLITGGMGAIGRRL 275
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for
infectious disease, ssgcid, isomerase, NAD; HET: NAD
GUD; 1.90A {Burkholderia pseudomallei 1710B}
Length = 341
Score = 28.6 bits (65), Expect = 0.94
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 39 ILVTGGTGFMG 49
ILVTGG G++G
Sbjct: 8 ILVTGGAGYIG 18
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG;
1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A*
1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A*
2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A*
1a9y_A*
Length = 338
Score = 28.6 bits (65), Expect = 0.96
Identities = 7/11 (63%), Positives = 11/11 (100%)
Query: 39 ILVTGGTGFMG 49
+LVTGG+G++G
Sbjct: 3 VLVTGGSGYIG 13
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET:
NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Length = 311
Score = 28.3 bits (64), Expect = 1.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 39 ILVTGGTGFMGKLLIDKLLR 58
+LVTGG GF+G +++ LL
Sbjct: 3 VLVTGGAGFIGSHIVEDLLA 22
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase,
epimerization, oxidoreductase; 1.88A {Streptomyces
venezuelae}
Length = 525
Score = 28.6 bits (64), Expect = 1.3
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 36 DGQILVTGGTGFMGKLL 52
DG +LVTG
Sbjct: 251 DGTVLVTGAEEPAAAEA 267
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, protein-nucleotide comple binding
protein; HET: NAD UDP; 2.00A {Bordetella
bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Length = 330
Score = 28.3 bits (64), Expect = 1.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 39 ILVTGGTGFMGKLLIDKLLR 58
IL+TGG G +G LI+ L
Sbjct: 23 ILITGGAGCLGSNLIEHWLP 42
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase,
oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora
erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Length = 486
Score = 28.1 bits (63), Expect = 1.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 36 DGQILVTGGTGFMGKLL 52
G +LVTGGTG +G +
Sbjct: 226 TGTVLVTGGTGGVGGQI 242
>2gsj_A Protein PPL-2; mimosoideae, chimerolectin, endochitinase, glycosyl
hydrolase family 18, equilibrium sedimentation, X-RAY;
1.73A {Parkia platycephala}
Length = 271
Score = 27.7 bits (61), Expect = 1.7
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 30 VDDFYRDG-QILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNS 88
+ D DG + G + L + L G + + P++ + L++
Sbjct: 114 LGDAVLDGVDFDIEHGGAYYDALA--RRLSEHNRGGKKVFLSAAPQCPFPDQSLNKALST 171
Query: 89 VIFDRLN 95
+FD +
Sbjct: 172 GLFDYVW 178
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 27.8 bits (62), Expect = 2.1
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 39 ILVTGGTGFMG 49
+LVTGG G++G
Sbjct: 14 VLVTGGAGYIG 24
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase,
galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A*
1i3l_A* 1i3m_A* 1i3n_A*
Length = 348
Score = 27.9 bits (63), Expect = 2.1
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 39 ILVTGGTGFMG 49
+LVTGG G++G
Sbjct: 5 VLVTGGAGYIG 15
>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET:
TYD NAD; 1.80A {Salmonella enterica subsp} SCOP:
c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*
Length = 361
Score = 27.9 bits (63), Expect = 2.1
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 39 ILVTGGTGFMG 49
IL+TGG GF+G
Sbjct: 3 ILITGGAGFIG 13
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 27.4 bits (61), Expect = 3.1
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 39 ILVTGGTGFMGKLLIDKLL 57
++V GG G+ G L
Sbjct: 14 VMVIGGDGYCGWATALHLS 32
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces
nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Length = 496
Score = 27.4 bits (61), Expect = 3.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 36 DGQILVTGGTGFMGKLL 52
G +LVTGGTG +G +
Sbjct: 239 HGSVLVTGGTGGIGGRV 255
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD
repeat, scaffold protein, ATP- binding, endosome, golgi
apparatus; 1.80A {Saccharomyces cerevisiae}
Length = 437
Score = 27.1 bits (60), Expect = 4.0
Identities = 4/37 (10%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 74 KGSSPEERVKNMLNSVIFDRLNKEVPDFRSKIQVIPS 110
+G ++ L++ ++ +F +++ S
Sbjct: 10 EGDVE--SIEKFLSTFKILPPLRDYKEFGPIQEIVRS 44
>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Length = 379
Score = 26.9 bits (60), Expect = 4.3
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 21 SPIMQEEQKVDDFYRDGQILVTGG 44
+P EE + ++ + VTGG
Sbjct: 156 APATIEEDGEHNGTKESRKFVTGG 179
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial
fission, GT stalk, PH, BSE, membrane fission; HET: 1PE;
3.10A {Rattus norvegicus} PDB: 3snh_A
Length = 772
Score = 26.7 bits (58), Expect = 4.9
Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 83 KNMLNSVIFDRLNKEVPDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAASLR 142
+ +LN + + + +P R+K+Q ++E E K + +
Sbjct: 298 QKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYKNFRPDDPARKTKALLQMV--QQ 355
Query: 143 FDEALQKAIRAN 154
F +K I +
Sbjct: 356 FAVDFEKRIEGS 367
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31;
beta propeller, alpha solenoid; 2.35A {Saccharomyces
cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Length = 297
Score = 26.4 bits (59), Expect = 5.1
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 21 SPIMQEEQKVDDFYRDGQILVTGG 44
+P EE + ++ + VTGG
Sbjct: 154 APATIEEDGEHNGTKESRKFVTGG 177
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A
{Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Length = 397
Score = 26.5 bits (59), Expect = 5.6
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 39 ILVTGGTGFMG 49
+LV GG G++G
Sbjct: 5 VLVCGGAGYIG 15
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 26.4 bits (59), Expect = 5.6
Identities = 5/37 (13%), Positives = 11/37 (29%), Gaps = 3/37 (8%)
Query: 101 FRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHC 137
R I++ L + + EQ+ +
Sbjct: 45 DRRNIRIK---LGMHSKNIRNEDEQIRVPRGKYFCLN 78
>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein
fermentation; 2.50A {Acidaminococcus fermentans} SCOP:
c.124.1.2
Length = 317
Score = 26.2 bits (58), Expect = 6.1
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 21 SPIMQEEQKVDDFYRDGQILVTGGTGFMGK--LLIDKLLRS 59
S +M + + + G + GG K + ++LR
Sbjct: 1 SKVMTLKDAIAKYVHSGDHIALGGFTTDRKPYAAVFEILRQ 41
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase,
CDC25 phosphatase, rhodanese, C-MYC epitope,
oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Length = 152
Score = 25.8 bits (56), Expect = 6.4
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 108 IPSNLESEHLGLSEDSEQLIKSKVNIIFHCAA----SLRFDEALQKAIRANLYATKQMLN 163
+P+ +E + + K +FHCA + + A + Y +
Sbjct: 46 MPTISCTEEMYEKLAKTLFEEKKELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYV 105
Query: 164 L 164
L
Sbjct: 106 L 106
>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum, ER-golgi transport, membrane,
mRNA transport; 4.00A {Saccharomyces cerevisiae}
Length = 753
Score = 26.1 bits (57), Expect = 8.4
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 21 SPIMQEEQKVDDFYRDGQILVTGG 44
+P EE + ++ + VTGG
Sbjct: 154 APATIEEDGEHNGTKESRKFVTGG 177
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton,
protein COM cytoskeletal protein; HET: GTP; 2.5A
{Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB:
2btq_A*
Length = 473
Score = 25.9 bits (57), Expect = 8.6
Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 43 GGTGF-MGKLLIDKLLRSFPD 62
GGTG G LLI+ L + +
Sbjct: 145 GGTGSGFGALLIESLKEKYGE 165
>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein
phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1
Length = 161
Score = 25.4 bits (55), Expect = 9.2
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 108 IPSNLESEHLGLSEDSEQLIKSKVNIIFHCAAS 140
+ E E L + +V ++FHC S
Sbjct: 67 LHMEEEVEDFLLKKPIVPTDGKRVIVVFHCEFS 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.390
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,700,978
Number of extensions: 155055
Number of successful extensions: 541
Number of sequences better than 10.0: 1
Number of HSP's gapped: 534
Number of HSP's successfully gapped: 115
Length of query: 177
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 90
Effective length of database: 4,272,666
Effective search space: 384539940
Effective search space used: 384539940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)