RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17489
(177 letters)
>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 312
Score = 51.6 bits (123), Expect = 6e-09
Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 33/133 (24%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEV 98
IL+TGG GF+G L DKL+ ++ + D + + V++ + F+ +N +V
Sbjct: 4 ILITGGAGFVGSHLTDKLMMDGHEVTVV-----DNFFTGRKRNVEHWIGHENFELINHDV 58
Query: 99 PDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAASLRFDEALQ---KAIRANL 155
+ + +V+ I+H A+ + K ++ N
Sbjct: 59 VEP-------------------------LYIEVDQIYHLASPASPPNYMYNPIKTLKTNT 93
Query: 156 YATKQMLNLAKEC 168
T ML LAK
Sbjct: 94 IGTLNMLGLAKRV 106
>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 361
Score = 48.2 bits (114), Expect = 1e-07
Identities = 21/133 (15%), Positives = 53/133 (39%), Gaps = 24/133 (18%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEV 98
IL+TGG GF+G ++ ++++ D + + + E + ++ S ++ + ++
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQD---TVVNIDKLTYAGNLESLSDISESNRYNFEHADI 59
Query: 99 PDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAASLRFDEALQ---KAIRANL 155
D ++ + + + + H AA D ++ I N+
Sbjct: 60 CDSAEITRIFE------------------QYQPDAVMHLAAESHVDRSITGPAAFIETNI 101
Query: 156 YATKQMLNLAKEC 168
T +L +A++
Sbjct: 102 VGTYALLEVARKY 114
>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia
pseudotuberculosis [TaxId: 633]}
Length = 356
Score = 46.8 bits (109), Expect = 3e-07
Identities = 15/66 (22%), Positives = 25/66 (37%)
Query: 32 DFYRDGQILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIF 91
F++ ++ VTG TGF G L L + + RV + + S I
Sbjct: 4 SFWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIG 63
Query: 92 DRLNKE 97
D ++
Sbjct: 64 DIRDQN 69
>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Escherichia coli [TaxId:
562]}
Length = 338
Score = 45.7 bits (107), Expect = 7e-07
Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 33/144 (22%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEV 98
+LVTGG+G++G +LL++ D+ +I D L
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDV-------------------------IILDNLCNSK 37
Query: 99 PDFRSKIQVIPSNLESEHLGLSEDSEQLIK----SKVNIIFHCAASLRFDEALQ---KAI 151
I+ + + G + + + ++ + H A E++Q +
Sbjct: 38 RSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYY 97
Query: 152 RANLYATKQMLNLAKECVNLKRFC 175
N+ T ++++ + N+K F
Sbjct: 98 DNNVNGTLRLISAMRAA-NVKNFI 120
>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces
salmonicolor [TaxId: 5005]}
Length = 342
Score = 43.6 bits (101), Expect = 4e-06
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 18/93 (19%)
Query: 17 ALPESPIMQEEQKVDDFYRDGQILVTGGTGFMGKLLIDKLLRSFPDIGA-IYIMVRDKKG 75
A ++ ++ E +LVTG GF+ ++++LL G + R
Sbjct: 1 AKIDNAVLPEGSL---------VLVTGANGFVASHVVEQLLEH----GYKVRGTARSA-- 45
Query: 76 SSPEERVKNMLNSVIFDRLNKEV-PDFRSKIQV 107
S ++ ++ R V D +
Sbjct: 46 -SKLANLQKRWDAKYPGRFETAVVEDMLKQGAY 77
>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240
(T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 252
Score = 40.6 bits (93), Expect = 3e-05
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKK 74
+LVTG +G G+++ KL +VR +
Sbjct: 6 VLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSAQ 40
>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptomyces venezuelae [TaxId: 54571]}
Length = 322
Score = 40.6 bits (94), Expect = 3e-05
Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 18/138 (13%)
Query: 39 ILVTGGTGFMGKLLIDKLL-RSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKE 97
+LVTGG GF+G + +LL ++PD+ A ++V D + +R N
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYA-------------GNRANLA 49
Query: 98 VPDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAASLRFDEALQKAIRANLYA 157
D +++ + ++ L E + + R N+
Sbjct: 50 PVDADPRLRFVHGDIRDAGL---LARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQG 106
Query: 158 TKQMLNLAKECVNLKRFC 175
T+ +L A + + R
Sbjct: 107 TQTLLQCAVDA-GVGRVV 123
>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 393
Score = 40.7 bits (93), Expect = 4e-05
Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEV 98
++V GG G+ G L + ++ + +VR + S I DR+++
Sbjct: 4 VMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIAS-IHDRISRWK 62
Query: 99 PDFRSKIQVIPSNL 112
I++ ++
Sbjct: 63 ALTGKSIELYVGDI 76
>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase
{Loblolly pine (Pinus taeda) [TaxId: 3352]}
Length = 307
Score = 40.2 bits (92), Expect = 5e-05
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKN 84
IL+ G TG++G+ + L +++VR+ SS E+ +
Sbjct: 6 ILLIGATGYIGRHVAKASLDLGHP---TFLLVRESTASSNSEKAQL 48
>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant
arborvitae (Thuja plicata) [TaxId: 3316]}
Length = 312
Score = 40.1 bits (92), Expect = 5e-05
Identities = 10/41 (24%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPE 79
+L+ GGTG++GK +++ + Y++ R + S+ +
Sbjct: 6 VLIVGGTGYIGKRIVNASISLGHP---TYVLFRPEVVSNID 43
>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase
{Escherichia coli [TaxId: 562]}
Length = 307
Score = 40.0 bits (91), Expect = 6e-05
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEV 98
I+VTGG GF+G ++ L G I+V D + N+++ I D ++KE
Sbjct: 2 IIVTGGAGFIGSNIVKALNDK----GITDILVVDNL--KDGTKFVNLVDLNIADYMDKE- 54
Query: 99 PDFRSKI 105
DF +I
Sbjct: 55 -DFLIQI 60
>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 346
Score = 40.0 bits (92), Expect = 7e-05
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEV 98
I+VTGG GF+G + + + PD +++ V DK + K L +++ DR+ V
Sbjct: 5 IIVTGGAGFIGSNFVHYVYNNHPD---VHVTVLDKLTYAGN---KANLEAILGDRVELVV 58
Query: 99 PDFRSKIQV 107
D V
Sbjct: 59 GDIADAELV 67
>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 232
Score = 39.0 bits (89), Expect = 1e-04
Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFD 92
+ + G +G G++L+ ++L + ++ R K E V F+
Sbjct: 17 VFILGASGETGRVLLKEILEQ-GLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFE 69
>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi
[TaxId: 90370]}
Length = 338
Score = 38.9 bits (89), Expect = 1e-04
Identities = 23/143 (16%), Positives = 44/143 (30%), Gaps = 31/143 (21%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEV 98
+L+TGG GF+G L L D+ ++FD L+++
Sbjct: 3 LLITGGCGFLGSNLASFALSQGIDL-------------------------IVFDNLSRKG 37
Query: 99 PDFRSKIQVIPSNLESEHLGLSEDS---EQLIKSKVNIIFHCAASLRFDEALQ---KAIR 152
N E H + + + K + FH A + ++
Sbjct: 38 ATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFE 97
Query: 153 ANLYATKQMLNLAKECVNLKRFC 175
N+ T +L ++ +
Sbjct: 98 INVGGTLNLLEAVRQYNSNCNII 120
>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 347
Score = 38.9 bits (89), Expect = 1e-04
Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 29/105 (27%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEV 98
+LVTGG G++G + +L+ + D V+ D L+
Sbjct: 4 VLVTGGAGYIGSHTVVELIENGYDC-------------------------VVADNLSNST 38
Query: 99 PDFRSKIQVIPSNLESEHLGLSEDSEQLIK----SKVNIIFHCAA 139
D ++++V+ + + D + L K K++ + H A
Sbjct: 39 YDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHFAG 83
>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 346
Score = 38.9 bits (89), Expect = 2e-04
Identities = 13/66 (19%), Positives = 24/66 (36%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEV 98
+LVTGG G++G + +LL + I +G + + + E
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEE 64
Query: 99 PDFRSK 104
D +
Sbjct: 65 MDILDQ 70
>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli
[TaxId: 562]}
Length = 357
Score = 38.2 bits (88), Expect = 3e-04
Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 22/141 (15%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEV 98
L+TG TG G L + LL ++ I ++ SS N+ D + ++
Sbjct: 4 ALITGVTGQDGSYLAEFLLEKGYEVHGI-----KRRASS--------FNTERVDHIYQDP 50
Query: 99 PDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAASLRFDEALQ---KAIRANL 155
K + +L S + L + + + +++ A + + +
Sbjct: 51 HTCNPKFHLHYGDLSDT----SNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDA 106
Query: 156 YATKQMLNLAKE--CVNLKRF 174
T ++L + RF
Sbjct: 107 MGTLRLLEAIRFLGLEKKTRF 127
>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA
{Aspergillus nidulans [TaxId: 162425]}
Length = 350
Score = 38.1 bits (87), Expect = 3e-04
Identities = 14/43 (32%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGA-IYIMVRDKKGSSPEE 80
I V G TG G LI G + V KG EE
Sbjct: 6 IAVVGATGRQGASLIRVAAAV----GHHVRAQVHSLKGLIAEE 44
>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 212
Score = 37.4 bits (85), Expect = 3e-04
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDK 73
+L+ G TG G+ L+D++L P + + R
Sbjct: 5 VLLAGATGLTGEHLLDRILSE-PTLAKVIAPARKA 38
>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 205
Score = 37.3 bits (85), Expect = 4e-04
Identities = 8/34 (23%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRD 72
I + G TG G + + +++ + + ++VRD
Sbjct: 6 IAIFGATGQTGLTTLAQAVQAGYE---VTVLVRD 36
>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA
(PrmI) {Escherichia coli [TaxId: 562]}
Length = 342
Score = 37.2 bits (84), Expect = 5e-04
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKN 84
+L+ G GF+G L ++LLR + D + + +
Sbjct: 3 VLILGVNGFIGNHLTERLLRE----DHYEVYGLDIGSDAISRFLNH 44
>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 341
Score = 37.2 bits (85), Expect = 6e-04
Identities = 18/130 (13%), Positives = 43/130 (33%), Gaps = 16/130 (12%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEV 98
L+TG GF+G L++ LL+ + + + + + V+++++ +
Sbjct: 19 WLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNL--DEVRSLVSEKQWSNFKFIQ 76
Query: 99 PDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAASLRFDEALQKAIRANLYAT 158
D R+ + ++ V + R + N+
Sbjct: 77 GDIRNLDDCNNACAGVDY--------------VLHQAALGSVPRSINDPITSNATNIDGF 122
Query: 159 KQMLNLAKEC 168
ML A++
Sbjct: 123 LNMLIAARDA 132
>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId:
5691]}
Length = 383
Score = 36.3 bits (82), Expect = 0.001
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 39 ILVTGGTGFMGKLLIDKLLR 58
+LV GG G++G + LLR
Sbjct: 5 VLVCGGAGYIGSHFVRALLR 24
>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase
(RmlD) {Salmonella enterica serovar typhimurium [TaxId:
90371]}
Length = 298
Score = 35.7 bits (80), Expect = 0.002
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGS-SPEERVKNMLNSVIFD 92
IL+ G TG +G L L I A+ + ++ G S + V + + D
Sbjct: 3 ILLFGKTGQVGWELQRSLAPVGNLI-ALDVHSKEFCGDFSNPKGVAETVRKLRPD 56
>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose
epimerase/reductase (GDP-fucose synthetase)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 34.9 bits (79), Expect = 0.003
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 39 ILVTGGTGFMGKLLIDKLLR 58
+ + G G +G + +L +
Sbjct: 5 VFIAGHRGMVGSAIRRQLEQ 24
>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 363
Score = 34.9 bits (79), Expect = 0.003
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 39 ILVTGGTGFMGKLLIDKLLR 58
I +TG GF+ + +L
Sbjct: 18 ISITGAGGFIASHIARRLKH 37
>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 281
Score = 34.0 bits (76), Expect = 0.005
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFD 92
IL+TG G +G+ + +L + + + V N +
Sbjct: 4 ILITGANGQLGREIQKQLKGKNVE---VIPTDVQDLDITNVLAVNKFFNEKKPN 54
>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st
ketoreductase module {Saccharopolyspora erythraea
[TaxId: 1836]}
Length = 259
Score = 33.8 bits (76), Expect = 0.006
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 31 DDFYRDGQILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEE 80
D++ G +LVTGGTG +G + L R GA ++++ + G +
Sbjct: 4 DEWKPTGTVLVTGGTGGVGGQIARWLARR----GAPHLLLVSRSGPDADG 49
>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 339
Score = 33.9 bits (76), Expect = 0.007
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 39 ILVTGGTGFMGKLLIDKLLR 58
L+TG TG G L + LL
Sbjct: 4 ALITGITGQDGSYLTEFLLG 23
>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 321
Score = 33.4 bits (75), Expect = 0.009
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 39 ILVTGGTGFMGKLLIDKLLR 58
LVTG TG G L LL
Sbjct: 3 ALVTGITGQDGAYLAKLLLE 22
>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 347
Score = 33.4 bits (75), Expect = 0.010
Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 19/140 (13%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPE--ERVKNMLNSVIFDRLNK 96
L+TG TG G L + LL + ++ +VR + E + + I +
Sbjct: 4 ALITGITGQDGSYLAEFLLEKGYE---VHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKL 60
Query: 97 EVPDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAASLRFDEALQKAIRANLY 156
D ++ E + +++ + + + + +
Sbjct: 61 HYGDLTDSTCLVKIINEVKP------------TEIYNLGAQSHVKISFDLAEYTADVDGV 108
Query: 157 ATKQMLNLAKEC--VNLKRF 174
T ++L+ K C +N +F
Sbjct: 109 GTLRLLDAVKTCGLINSVKF 128
>d1vkna1 c.2.1.3 (A:1-144,A:308-339)
N-acetyl-gamma-glutamyl-phosphate reductase ArgC
{Thermotoga maritima [TaxId: 2336]}
Length = 176
Score = 31.0 bits (69), Expect = 0.047
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEV 98
+ G TG+ G L+ +LL++ P+ Y+ R G EE + L + I + E
Sbjct: 4 AGIIGATGYTGLELV-RLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEK 62
Query: 99 PDFRSKI 105
+
Sbjct: 63 VSKNCDV 69
>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 259
Score = 30.0 bits (67), Expect = 0.14
Identities = 22/147 (14%), Positives = 47/147 (31%), Gaps = 29/147 (19%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGA-IYIMVRDKKGSSPEERVKNMLNSVIFDRLNKE 97
+LVTGGT +G ++++ GA I+ R++ + +
Sbjct: 11 VLVTGGTKGIGHAIVEEFAGF----GAVIHTCARNEYE---------------LNECLSK 51
Query: 98 VPDFRSKIQVIPSNL--ESEHLGLSEDSEQLIKSKVNIIFHCAASLRF-------DEALQ 148
++ + E L + + K++I+ + ++R E
Sbjct: 52 WQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFS 111
Query: 149 KAIRANLYATKQMLNLAKECVNLKRFC 175
I NL + + LA +
Sbjct: 112 FHISTNLESAYHLSQLAHPLLKASGCG 138
>d1poia_ c.124.1.2 (A:) Glutaconate:CoA transferase alpha
{Acidaminococcus fermentans [TaxId: 905]}
Length = 317
Score = 28.7 bits (64), Expect = 0.30
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 21 SPIMQEEQKVDDFYRDGQILVTGGTGFMGK--LLIDKLLRSFP 61
S +M + + + G + GG K + ++LR
Sbjct: 1 SKVMTLKDAIAKYVHSGDHIALGGFTTDRKPYAAVFEILRQGI 43
>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine
reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 236
Score = 27.9 bits (61), Expect = 0.66
Identities = 19/111 (17%), Positives = 29/111 (26%), Gaps = 25/111 (22%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEV 98
+LV GG G +G + V D + E
Sbjct: 5 VLVYGGRGALGSRCVQAFRAR----NW---------------WV------ASIDVVENEE 39
Query: 99 PDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAASLRFDEALQK 149
+++ S E +E + L KV+ I A A K
Sbjct: 40 ASASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSK 90
>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of
estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 302
Score = 27.3 bits (60), Expect = 1.1
Identities = 20/130 (15%), Positives = 46/130 (35%), Gaps = 18/130 (13%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEV 98
+LVTG G +G+ GA+ ++ + + D++ +E+
Sbjct: 10 VLVTGAGGGLGRAYALAFAER----GALVVVNDLGGDFKGVGKGSSAA-----DKVVEEI 60
Query: 99 PDFRSKIQVIPSNLESEHLGLSEDSEQLIKSKVNIIFHCAASLRF-------DEALQKAI 151
K ++E+ + + +++++ + A LR DE
Sbjct: 61 RRRGGKAVANYDSVEAGEKLVKTALDTF--GRIDVVVNNAGILRDRSFSRISDEDWDIIQ 118
Query: 152 RANLYATKQM 161
R +L + Q+
Sbjct: 119 RVHLRGSFQV 128
>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura
stramonium), II [TaxId: 4076]}
Length = 259
Score = 26.9 bits (59), Expect = 1.5
Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 29/147 (19%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGA-IYIMVRDKKGSSPEERVKNMLNSVIFDRLNKE 97
LVTGG+ +G ++++L GA +Y R++K + +
Sbjct: 11 ALVTGGSRGIGYGIVEELASL----GASVYTCSRNQKE---------------LNDCLTQ 51
Query: 98 VPDFRSKIQVIPSNL--ESEHLGLSEDSEQLIKSKVNIIFHCAASLRF-------DEALQ 148
K++ +L SE L K+NI+ + A + + E
Sbjct: 52 WRSKGFKVEASVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYS 111
Query: 149 KAIRANLYATKQMLNLAKECVNLKRFC 175
+ N A + LA +
Sbjct: 112 LIMSINFEAAYHLSVLAHPFLKASERG 138
>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase
(acylating) {Pseudomonas sp. [TaxId: 306]}
Length = 157
Score = 26.2 bits (57), Expect = 1.5
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 44 GTGFMGKLLIDKLLRSFPDIGAIYIMVRDKK 74
G+G +G L+ K+LR+ + ++ D
Sbjct: 11 GSGNIGTDLMIKVLRNAKYLEMGAMVGIDAA 41
>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 248
Score = 26.6 bits (57), Expect = 1.6
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKG 75
IL+TG +G L+ LL ++ R+++
Sbjct: 5 ILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQ 41
>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 144
Score = 26.1 bits (57), Expect = 1.7
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 76 SSPEERVKNMLNSVIFDRLNKEVPDFRSKIQVIPSNLE---SEHLGLSEDSEQLIKSKVN 132
S+P + K ML +F + P KI LE SE L + E E L +SKV+
Sbjct: 60 SAPPQEQKQMLGERLFPLIQAMHPTLAGKI--TGMLLEIDNSELLHMLESPESL-RSKVD 116
>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 285
Score = 26.4 bits (57), Expect = 2.2
Identities = 11/50 (22%), Positives = 18/50 (36%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNS 88
+L+TG + +G L +L +Y +RD K L
Sbjct: 5 VLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALAC 54
>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine
reductase) {Nematode (Caenorhabditis elegans) [TaxId:
6239]}
Length = 235
Score = 26.0 bits (56), Expect = 2.4
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 37 GQILVTGGTGFMGKLLIDKLLR 58
G+++V GG G +G +++ +
Sbjct: 3 GKVIVYGGKGALGSAILEFFKK 24
>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase
{Azoarcus sp. ebn1 [TaxId: 76114]}
Length = 247
Score = 26.0 bits (57), Expect = 2.6
Identities = 16/134 (11%), Positives = 37/134 (27%), Gaps = 40/134 (29%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGA-IYIMVRDKKGSSPEERVKNMLNSVIFDRLNKE 97
++TGG +G+ + ++ GA I I
Sbjct: 8 AVITGGANGIGRAIAERFAVE----GADIAIADLVPA-----------------PEAEAA 46
Query: 98 VPDFRSKIQVIPSNLESEHLGLSEDSEQLIKS------KVNIIFHCAASLRF-------D 144
+ + ++ + ++ D E K + +I+ + A
Sbjct: 47 IRNLGRRVLTVKCDVSQP-----GDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTF 101
Query: 145 EALQKAIRANLYAT 158
E +K N+ +
Sbjct: 102 EQWKKTFEINVDSG 115
>d2bv3a3 d.14.1.1 (A:479-599) Elongation factor G (EF-G), domain IV
{Thermus thermophilus [TaxId: 274]}
Length = 121
Score = 25.3 bits (55), Expect = 2.7
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 135 FHCAASLRFDEALQKA 150
F A S+ EA+QK
Sbjct: 104 FKIAGSMAIKEAVQKG 119
>d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G
{Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 25.0 bits (54), Expect = 3.2
Identities = 7/51 (13%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 66 IYIMVRDKKGSSPEERVKNMLNSVIFDRLNKEVPDFRSKIQVIPSNLESEH 116
I + + ++ +ER + + F + ++++++P ES
Sbjct: 50 GKIYIWKGRKANEKERQAALQVAEGFISRMQY--APNTQVEILPQGRESPI 98
>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 135
Score = 25.1 bits (54), Expect = 3.4
Identities = 4/21 (19%), Positives = 10/21 (47%)
Query: 39 ILVTGGTGFMGKLLIDKLLRS 59
+ V G G +G ++ + +
Sbjct: 2 VGVLGAKGKVGATMVRAVAAA 22
>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 109
Score = 25.0 bits (54), Expect = 3.5
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 75 GSSPEERVKNMLNS---VIFDRLNKEVP 99
GSS +K + N ++F + NK+
Sbjct: 1 GSSGSSGLKVLTNKASVMLFMKGNKQEA 28
>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase
{Escherichia coli [TaxId: 562]}
Length = 162
Score = 25.2 bits (54), Expect = 3.9
Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 4/70 (5%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDI---GAIYIMVRDKKGSSPEERVKNMLNSVIFDRLN 95
+ + G G MG+ LI + + + A+ GS E V
Sbjct: 7 VAIAGAGGRMGRQLI-QAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSL 65
Query: 96 KEVPDFRSKI 105
V D
Sbjct: 66 DAVKDDFDVF 75
>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 122
Score = 24.1 bits (52), Expect = 6.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 54 DKLLRSFPDIGAIYIMVRDKKG 75
D+ + PD G IY M+++KK
Sbjct: 94 DRNVGGIPDWGIIYEMIKEKKT 115
>d1woqa2 c.55.1.10 (A:140-263) Inorganic
polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter
sp. KM [TaxId: 184230]}
Length = 124
Score = 24.1 bits (52), Expect = 7.0
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 39 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIM 69
+++T GTG + D L ++G + I
Sbjct: 6 LVITLGTGIGSAFIFDGKLVPNAELGHLEID 36
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.390
Gapped
Lambda K H
0.267 0.0369 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 652,724
Number of extensions: 28978
Number of successful extensions: 214
Number of sequences better than 10.0: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 60
Length of query: 177
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 97
Effective length of database: 1,309,196
Effective search space: 126992012
Effective search space used: 126992012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (24.0 bits)