BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1749
(87 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DH94|R1442_DANRE Probable E3 ubiquitin-protein ligase RNF144A-B OS=Danio rerio
GN=rnf144ab PE=2 SV=1
Length = 293
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 62/73 (84%)
Query: 13 DSELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDDDFLLRHYDKGPCKNKLG 72
D IK CP C V IE+DEGCAQM+CK CKH FCWYCL SLDDDFLL HYDKGPC+NKLG
Sbjct: 179 DEAPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYCLESLDDDFLLIHYDKGPCRNKLG 238
Query: 73 HSRASVIWHRTQV 85
HSRASVIWHRTQV
Sbjct: 239 HSRASVIWHRTQV 251
>sp|Q5RFV4|R1441_DANRE Probable E3 ubiquitin-protein ligase RNF144A-A OS=Danio rerio
GN=rnf144aa PE=3 SV=1
Length = 293
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 62/73 (84%)
Query: 13 DSELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDDDFLLRHYDKGPCKNKLG 72
D IK CP C V IE+DEGCAQM+CK CKH FCWYCL SLDDDFLL HYDKGPC+NKLG
Sbjct: 179 DDAPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYCLESLDDDFLLIHYDKGPCRNKLG 238
Query: 73 HSRASVIWHRTQV 85
HSRASVIWHRTQV
Sbjct: 239 HSRASVIWHRTQV 251
>sp|P50876|R144A_HUMAN Probable E3 ubiquitin-protein ligase RNF144A OS=Homo sapiens
GN=RNF144A PE=1 SV=2
Length = 292
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 62/73 (84%)
Query: 13 DSELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDDDFLLRHYDKGPCKNKLG 72
D IK CP C V IE+DEGCAQM+CK CKH FCWYCL SLDDDFLL HYDKGPC+NKLG
Sbjct: 178 DDAPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYCLESLDDDFLLIHYDKGPCRNKLG 237
Query: 73 HSRASVIWHRTQV 85
HSRASVIWHRTQV
Sbjct: 238 HSRASVIWHRTQV 250
>sp|A4IIY1|R144A_XENTR Probable E3 ubiquitin-protein ligase RNF144A OS=Xenopus tropicalis
GN=rnf144a PE=2 SV=1
Length = 292
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 62/73 (84%)
Query: 13 DSELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDDDFLLRHYDKGPCKNKLG 72
D IK CP C V IE+DEGCAQM+CK CKH FCWYCL SLDDDFLL HYDKGPC+NKLG
Sbjct: 178 DDVPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYCLESLDDDFLLIHYDKGPCRNKLG 237
Query: 73 HSRASVIWHRTQV 85
HSRASVIWHRTQV
Sbjct: 238 HSRASVIWHRTQV 250
>sp|Q925F3|R144A_MOUSE Probable E3 ubiquitin-protein ligase RNF144A OS=Mus musculus
GN=Rnf144a PE=1 SV=1
Length = 292
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 58/69 (84%), Positives = 61/69 (88%)
Query: 17 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDDDFLLRHYDKGPCKNKLGHSRA 76
IK CP C V IE+DEGCAQM+CK CKH FCWYCL SLDDDFLL HYDKGPC+NKLGHSRA
Sbjct: 182 IKRCPKCRVYIERDEGCAQMMCKNCKHAFCWYCLESLDDDFLLIHYDKGPCRNKLGHSRA 241
Query: 77 SVIWHRTQV 85
SVIWHRTQV
Sbjct: 242 SVIWHRTQV 250
>sp|Q8BKD6|R144B_MOUSE E3 ubiquitin-protein ligase RNF144B OS=Mus musculus GN=Rnf144b PE=2
SV=2
Length = 301
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 54/80 (67%), Positives = 66/80 (82%), Gaps = 3/80 (3%)
Query: 9 GATFDSEL---IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDDDFLLRHYDKG 65
GA F ++ IK CP+C + IE++EGCAQM+CK CKH FCWYCL +LD+D LRHYDKG
Sbjct: 177 GALFGTDADAPIKQCPVCRIYIERNEGCAQMMCKNCKHTFCWYCLQNLDNDIFLRHYDKG 236
Query: 66 PCKNKLGHSRASVIWHRTQV 85
PC+NKLGHSRASV+W+RTQV
Sbjct: 237 PCRNKLGHSRASVMWNRTQV 256
>sp|A5PK27|R144B_BOVIN E3 ubiquitin-protein ligase RNF144B OS=Bos taurus GN=RNF144B PE=2
SV=1
Length = 304
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 54/80 (67%), Positives = 65/80 (81%), Gaps = 3/80 (3%)
Query: 9 GATFDSEL---IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDDDFLLRHYDKG 65
G F +E IK CP+C V IE++EGCAQM+CK CKH FCWYCL +LD+D LRHYD+G
Sbjct: 180 GTLFGTETDAPIKQCPVCRVYIERNEGCAQMMCKNCKHTFCWYCLQNLDNDIFLRHYDRG 239
Query: 66 PCKNKLGHSRASVIWHRTQV 85
PC+NKLGHSRASV+W+RTQV
Sbjct: 240 PCRNKLGHSRASVMWNRTQV 259
>sp|Q7Z419|R144B_HUMAN E3 ubiquitin-protein ligase RNF144B OS=Homo sapiens GN=RNF144B PE=1
SV=1
Length = 303
Score = 119 bits (297), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 52/69 (75%), Positives = 61/69 (88%)
Query: 17 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDDDFLLRHYDKGPCKNKLGHSRA 76
IK CP+C V IE++EGCAQM+CK CKH FCWYCL +LD+D LRHYDKGPC+NKLGHSRA
Sbjct: 190 IKQCPVCRVYIERNEGCAQMMCKNCKHTFCWYCLQNLDNDIFLRHYDKGPCRNKLGHSRA 249
Query: 77 SVIWHRTQV 85
SV+W+RTQV
Sbjct: 250 SVMWNRTQV 258
>sp|Q80TT8|CUL9_MOUSE Cullin-9 OS=Mus musculus GN=Cul9 PE=2 SV=2
Length = 1865
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/35 (62%), Positives = 23/35 (65%)
Query: 18 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLAS 52
K CP C PIEK+EGC M C RC H FCW CL S
Sbjct: 1573 KRCPSCQAPIEKNEGCLHMTCARCNHGFCWRCLKS 1607
>sp|Q8IWT3|CUL9_HUMAN Cullin-9 OS=Homo sapiens GN=CUL9 PE=1 SV=2
Length = 2517
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/35 (60%), Positives = 23/35 (65%)
Query: 18 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLAS 52
K CP C PIEK+EGC M C +C H FCW CL S
Sbjct: 2234 KRCPSCQAPIEKNEGCLHMTCAKCNHGFCWRCLKS 2268
>sp|Q9JI90|RNF14_MOUSE E3 ubiquitin-protein ligase RNF14 OS=Mus musculus GN=Rnf14 PE=2
SV=2
Length = 485
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 18 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDDDFLLRHY--DKGPCKNKLGHS 74
K CP C PI+K +GC +M C C FCW C+ SL RH+ + PC N+L H+
Sbjct: 403 KSCPCCGTPIQKLDGCNKMTCTGCMQYFCWICMGSLSRANPYRHFTDSESPCFNRLFHA 461
>sp|Q9UBS8|RNF14_HUMAN E3 ubiquitin-protein ligase RNF14 OS=Homo sapiens GN=RNF14 PE=1
SV=1
Length = 474
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 18 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDDDFLLRHYDK--GPCKNKLGHS 74
K CP C PIEK +GC +M C C FCW C+ SL +H++ PC N+L ++
Sbjct: 402 KSCPCCGTPIEKLDGCNKMTCTGCMQYFCWICMGSLSRANPYKHFNDPGSPCFNRLFYA 460
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 21 PMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDDDFLLRHYDKGPCK 68
P C +P+ ++ GC +C C FC C L ++ PCK
Sbjct: 312 PCCQLPVMQEPGCTMGICSSCNFAFCTLC--------RLTYHGVSPCK 351
>sp|Q54CX4|Y5521_DICDI Uncharacterized protein DDB_G0292642 OS=Dictyostelium discoideum
GN=DDB_G0292642 PE=4 SV=2
Length = 903
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 13 DSELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCL 50
+ +K CP C IEK +GC M C C+H FCW C+
Sbjct: 775 NKHFVKPCPTCKSHIEKHDGCNHMTCINCQHQFCWLCM 812
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 10 ATFDSELIKCCPM--CSVPIEKDEGCAQML-CKRCKHVFCWYC 49
A+ +E IK CP C P+ +L C +C + FCW C
Sbjct: 694 ASLKTEPIKWCPTPDCDTPVRGGSERNPILNCPKCSNDFCWIC 736
>sp|Q9P3U4|YKX2_SCHPO Uncharacterized RING finger protein C328.02 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC328.02 PE=3 SV=1
Length = 504
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 23/35 (65%)
Query: 17 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLA 51
K CP CS IEK+ GC M CK+CK+ FCW CL
Sbjct: 288 TKECPKCSTTIEKNGGCNHMTCKKCKYEFCWVCLG 322
>sp|O95376|ARI2_HUMAN E3 ubiquitin-protein ligase ARIH2 OS=Homo sapiens GN=ARIH2 PE=1
SV=1
Length = 493
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 10 ATFDSELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLA 51
A + S K CP C++ IEK+ GC M C +CKH FCW CL
Sbjct: 287 ANYISAHTKDCPKCNICIEKNGGCNHMQCSKCKHDFCWMCLG 328
>sp|Q9Z1K6|ARI2_MOUSE E3 ubiquitin-protein ligase ARIH2 OS=Mus musculus GN=Arih2 PE=2
SV=1
Length = 492
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 10 ATFDSELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLA 51
A + S K CP C++ IEK+ GC M C +CKH FCW CL
Sbjct: 286 ANYISAHTKDCPKCNICIEKNGGCNHMQCSKCKHDFCWMCLG 327
>sp|Q94981|ARI1_DROME Protein ariadne-1 OS=Drosophila melanogaster GN=ari-1 PE=1 SV=2
Length = 503
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 17 IKCCPMCSVPIEKDEGCAQMLCK--RCKHVFCWYCLAS 52
K CP CSV IEKD GC M+CK CK+ FCW CL S
Sbjct: 288 TKECPRCSVTIEKDGGCNHMVCKNQNCKNEFCWVCLGS 325
>sp|P36113|YKZ7_YEAST RING finger protein YKR017C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YKR017C PE=1 SV=1
Length = 551
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 22/32 (68%)
Query: 18 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYC 49
K CP CSV IEK+ GC M+C CK+ FCW C
Sbjct: 339 KECPKCSVNIEKNGGCNHMVCSSCKYEFCWIC 370
>sp|Q9P2G1|AKIB1_HUMAN Ankyrin repeat and IBR domain-containing protein 1 OS=Homo sapiens
GN=ANKIB1 PE=1 SV=3
Length = 1089
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 18 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCL 50
K C C PI+K+EGC M C +CK+ FCW CL
Sbjct: 517 KPCANCKSPIQKNEGCNHMQCAKCKYDFCWICL 549
>sp|Q6ZPS6|AKIB1_MOUSE Ankyrin repeat and IBR domain-containing protein 1 OS=Mus musculus
GN=Ankib1 PE=1 SV=2
Length = 1085
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 18 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCL 50
K C C PI+K+EGC M C +CK+ FCW CL
Sbjct: 518 KPCANCKSPIQKNEGCNHMQCAKCKYDFCWICL 550
>sp|Q9SKC2|ARI11_ARATH Probable E3 ubiquitin-protein ligase ARI11 OS=Arabidopsis thaliana
GN=ARI11 PE=2 SV=1
Length = 542
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 18 KCCPMCSVPIEKDEGCAQMLCKR-CKHVFCWYCLASLDD 55
K CP C PIEK+ GC M C C+H FCW CL L D
Sbjct: 296 KPCPKCKRPIEKNTGCNHMSCSAPCRHYFCWACLQPLSD 334
>sp|Q1L8G6|AKIB1_DANRE Ankyrin repeat and IBR domain-containing protein 1 OS=Danio rerio
GN=ankib1 PE=3 SV=1
Length = 1060
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 18 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCL 50
K C C PI+K+EGC M C +CK+ FCW CL
Sbjct: 516 KPCANCKSPIQKNEGCNHMQCAKCKYDFCWICL 548
>sp|O76924|ARI2_DROME Protein ariadne-2 OS=Drosophila melanogaster GN=ari-2 PE=2 SV=1
Length = 509
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 24/42 (57%)
Query: 10 ATFDSELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLA 51
A + S K CP C + IEK+ GC M C CKH FCW CL
Sbjct: 301 ANYISAHTKDCPKCHICIEKNGGCNHMQCFNCKHDFCWMCLG 342
>sp|Q5UQ35|YR811_MIMIV Putative ariadne-like RING finger protein R811 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R811 PE=4 SV=1
Length = 990
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 18 KCCP--MCSVPIEKDEGCAQMLCKRCKHVFCWYC 49
K CP +C +PI KD GC M C CK FCW C
Sbjct: 928 KECPNSLCKIPIIKDGGCNHMECTACKKHFCWLC 961
>sp|Q9SKC4|ARI10_ARATH Probable E3 ubiquitin-protein ligase ARI10 OS=Arabidopsis thaliana
GN=ARI10 PE=2 SV=1
Length = 514
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 18 KCCPMCSVPIEKDEGCAQMLCK-RCKHVFCWYCLASLDDDFLLRHY 62
K CP C PIEK GC M C C H FCW C S D + +Y
Sbjct: 276 KPCPKCKRPIEKSHGCNHMTCSASCGHRFCWICGKSYSDHYACNNY 321
>sp|Q84RR0|ARI7_ARATH Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana
GN=ARI7 PE=2 SV=1
Length = 562
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 18 KCCPMCSVPIEKDEGCAQMLCK-RCKHVFCWYCLAS 52
K CP C PIEK++GC M C CK+ FCW CL +
Sbjct: 293 KPCPRCKRPIEKNQGCMHMTCTPPCKYEFCWLCLGA 328
>sp|Q9SKC3|ARI9_ARATH Probable E3 ubiquitin-protein ligase ARI9 OS=Arabidopsis thaliana
GN=ARI9 PE=2 SV=1
Length = 543
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 18 KCCPMCSVPIEKDEGCAQMLCKR-CKHVFCWYCLAS 52
K CP C PIEK++GC M C C H FCW CL +
Sbjct: 285 KPCPECKRPIEKNDGCNHMTCSAPCGHEFCWICLKA 320
>sp|Q22431|ARI2_CAEEL Probable protein ariadne-2 OS=Caenorhabditis elegans GN=T12E12.1
PE=3 SV=2
Length = 482
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 10 ATFDSELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLA 51
A + S K CP C IEK GC + C RC+H FCW C
Sbjct: 277 ANYISAHTKDCPQCHSCIEKAGGCNHIQCTRCRHHFCWMCFG 318
>sp|Q6PFJ9|ARI1_DANRE E3 ubiquitin-protein ligase arih1 OS=Danio rerio GN=arih1 PE=2 SV=1
Length = 527
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 17 IKCCPMCSVPIEKDEGCAQMLCK--RCKHVFCWYCLA 51
K CP C V IEKD GC M+C+ CK FCW CL
Sbjct: 311 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLG 347
>sp|B1H1E4|ARI1_XENTR E3 ubiquitin-protein ligase arih1 OS=Xenopus tropicalis GN=arih1
PE=2 SV=1
Length = 529
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 17 IKCCPMCSVPIEKDEGCAQMLCK--RCKHVFCWYCLA 51
K CP C V IEKD GC M+C+ CK FCW CL
Sbjct: 313 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLG 349
>sp|Q32NS4|ARI1_XENLA E3 ubiquitin-protein ligase arih1 OS=Xenopus laevis GN=arih1 PE=2
SV=1
Length = 529
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 17 IKCCPMCSVPIEKDEGCAQMLCK--RCKHVFCWYCLA 51
K CP C V IEKD GC M+C+ CK FCW CL
Sbjct: 313 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLG 349
>sp|Q9Z1K5|ARI1_MOUSE E3 ubiquitin-protein ligase ARIH1 OS=Mus musculus GN=Arih1 PE=2
SV=3
Length = 555
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 17 IKCCPMCSVPIEKDEGCAQMLCK--RCKHVFCWYCLA 51
K CP C V IEKD GC M+C+ CK FCW CL
Sbjct: 339 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLG 375
>sp|Q9Y4X5|ARI1_HUMAN E3 ubiquitin-protein ligase ARIH1 OS=Homo sapiens GN=ARIH1 PE=1
SV=2
Length = 557
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 17 IKCCPMCSVPIEKDEGCAQMLCK--RCKHVFCWYCLA 51
K CP C V IEKD GC M+C+ CK FCW CL
Sbjct: 341 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLG 377
>sp|A2VEA3|ARI1_BOVIN E3 ubiquitin-protein ligase ARIH1 OS=Bos taurus GN=ARIH1 PE=2 SV=1
Length = 555
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 17 IKCCPMCSVPIEKDEGCAQMLCK--RCKHVFCWYCLA 51
K CP C V IEKD GC M+C+ CK FCW CL
Sbjct: 339 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLG 375
>sp|Q6NW85|ARI1L_DANRE E3 ubiquitin-protein ligase arih1l OS=Danio rerio GN=arih1l PE=2
SV=1
Length = 533
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 17 IKCCPMCSVPIEKDEGCAQMLCK--RCKHVFCWYCLA 51
K CP C V IEKD GC M+C+ CK FCW CL
Sbjct: 317 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLG 353
>sp|Q8L829|ARI5_ARATH Probable E3 ubiquitin-protein ligase ARI5 OS=Arabidopsis thaliana
GN=ARI5 PE=2 SV=1
Length = 552
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 18 KCCPMCSVPIEKDEGCAQMLCK-RCKHVFCWYCLAS 52
K CP C PIEK+ GC M C CK FCW CL +
Sbjct: 288 KPCPKCKRPIEKNHGCMHMTCTPPCKFEFCWLCLNA 323
>sp|P0C8K8|ARI6_ARATH Putative E3 ubiquitin-protein ligase ARI6 OS=Arabidopsis thaliana
GN=ARI6 PE=5 SV=1
Length = 552
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 18 KCCPMCSVPIEKDEGCAQMLCK-RCKHVFCWYCLAS 52
K CP C PIEK+ GC M C CK FCW CL +
Sbjct: 290 KPCPKCKRPIEKNHGCMHMTCTPPCKFEFCWLCLNA 325
>sp|Q8W468|ARI8_ARATH Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana
GN=ARI8 PE=2 SV=1
Length = 567
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 18 KCCPMCSVPIEKDEGCAQMLCK-RCKHVFCWYCLAS 52
K CP C PIEK++GC + C CK FCW CL +
Sbjct: 284 KPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGA 319
>sp|Q9LVW9|ARI4_ARATH Putative E3 ubiquitin-protein ligase ARI4 OS=Arabidopsis thaliana
GN=ARI4 PE=5 SV=2
Length = 529
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 17 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYC 49
K CP CS PI+K +GC M CK C FCW C
Sbjct: 274 TKLCPKCSKPIQKRDGCNHMTCK-CGQHFCWLC 305
>sp|Q9LVX0|ARI3_ARATH Probable E3 ubiquitin-protein ligase ARI3 OS=Arabidopsis thaliana
GN=ARI3 PE=2 SV=1
Length = 537
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 18 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYC 49
K CP CS PI+K +GC M CK C FCW C
Sbjct: 279 KLCPKCSKPIQKRDGCNLMTCK-CGQHFCWLC 309
>sp|Q2VJ60|RN19A_PIG E3 ubiquitin-protein ligase RNF19A OS=Sus scrofa GN=RNF19A PE=2
SV=1
Length = 838
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 9 GATFDSELIKCCPMCSVPIEK--DEGCAQMLCKRCKHVFCWYCLASLDD 55
GA D IK CP C+ I K D C M C C FCW C+ + D
Sbjct: 292 GAAADD--IKPCPRCAAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEISD 338
>sp|Q9NV58|RN19A_HUMAN E3 ubiquitin-protein ligase RNF19A OS=Homo sapiens GN=RNF19A PE=1
SV=3
Length = 838
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 9 GATFDSELIKCCPMCSVPIEK--DEGCAQMLCKRCKHVFCWYCLASLDD 55
GA D IK CP C+ I K D C M C C FCW C+ + D
Sbjct: 292 GAAADD--IKPCPRCAAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEISD 338
>sp|Q9JK66|PRKN2_RAT E3 ubiquitin-protein ligase parkin OS=Rattus norvegicus GN=Park2
PE=1 SV=1
Length = 465
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 15 ELIKCCPMCSVPIEKDEGCAQMLC--KRCKHVFCWYC 49
+ K CP C+VPIEK+ GC M C +CK +CW C
Sbjct: 413 KTTKPCPRCNVPIEKNGGCMHMKCPQPQCKLEWCWNC 449
>sp|Q9WVS6|PRKN2_MOUSE E3 ubiquitin-protein ligase parkin OS=Mus musculus GN=Park2 PE=1
SV=1
Length = 464
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 15 ELIKCCPMCSVPIEKDEGCAQMLC--KRCKHVFCWYC 49
+ K CP C+VPIEK+ GC M C +CK +CW C
Sbjct: 412 KTTKPCPRCNVPIEKNGGCMHMKCPQPQCKLEWCWNC 448
>sp|Q04638|ITT1_YEAST Translation termination inhibitor protein ITT1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ITT1 PE=1
SV=1
Length = 464
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 20 CPMCSVPIEKDEGCAQMLCKRCKHVFCWYC 49
CP C V +E+ EGC +M C+ C +FC+ C
Sbjct: 402 CPKCKVVVERSEGCNKMKCEVCGTLFCFIC 431
>sp|Q6T486|RBRA_DICDI Probable E3 ubiquitin-protein ligase rbrA OS=Dictyostelium
discoideum GN=rbrA PE=3 SV=1
Length = 520
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 17 IKCCPMCSVPIEKDEGCAQMLCKR----CKHVFCWYC 49
K CP C PIEK+ GC M C++ C FCW C
Sbjct: 297 TKKCPECRSPIEKNGGCMHMTCRKNAGGCGFEFCWLC 333
>sp|P0CE10|Y4102_ARATH Putative uncharacterized protein At4g01020, chloroplastic
OS=Arabidopsis thaliana GN=At4g01020 PE=4 SV=1
Length = 1787
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 17 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCL 50
+K CP+C IEK +GC + C+ KH+ CW CL
Sbjct: 1716 VKECPICKSTIEKTDGCNHLQCRCGKHI-CWTCL 1748
>sp|Q4KLT0|RN217_XENLA Probable E3 ubiquitin-protein ligase RNF217 OS=Xenopus laevis
GN=rnf217 PE=2 SV=1
Length = 282
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 20 CPMCSVPIEKDEGCAQMLCKRCKHVFCWYC 49
CP C V I++ EGC M C +C FC+ C
Sbjct: 163 CPRCKVHIQRTEGCDHMTCSQCNTNFCYRC 192
>sp|Q8TC41|RN217_HUMAN Probable E3 ubiquitin-protein ligase RNF217 OS=Homo sapiens
GN=RNF217 PE=2 SV=3
Length = 275
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 20 CPMCSVPIEKDEGCAQMLCKRCKHVFCWYC 49
CP C + I++ EGC M C +C FC+ C
Sbjct: 131 CPKCKIHIQRTEGCDHMTCSQCNTNFCYRC 160
>sp|D3YYI7|RN217_MOUSE Probable E3 ubiquitin-protein ligase RNF217 OS=Mus musculus
GN=Rnf217 PE=3 SV=2
Length = 515
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 20 CPMCSVPIEKDEGCAQMLCKRCKHVFCWYC 49
CP C + I++ EGC M C +C FC+ C
Sbjct: 396 CPKCKIHIQRTEGCDHMTCSQCNTNFCYRC 425
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.140 0.514
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,678,471
Number of Sequences: 539616
Number of extensions: 1106171
Number of successful extensions: 3755
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 3618
Number of HSP's gapped (non-prelim): 151
length of query: 87
length of database: 191,569,459
effective HSP length: 57
effective length of query: 30
effective length of database: 160,811,347
effective search space: 4824340410
effective search space used: 4824340410
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)