Query psy1749
Match_columns 87
No_of_seqs 119 out of 1010
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 23:50:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1749.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1749hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wd2_A Ariadne-1 protein homol 99.7 2.1E-19 7.3E-24 108.0 2.1 45 12-56 1-47 (60)
2 2ct7_A Ring finger protein 31; 98.2 2.7E-06 9.2E-11 53.1 5.2 42 14-55 22-63 (86)
3 2jmo_A Parkin; IBR, E3 ligase, 97.9 5.4E-06 1.9E-10 51.2 2.3 41 15-55 23-70 (80)
4 1pft_A TFIIB, PFTFIIBN; N-term 94.2 0.042 1.4E-06 30.4 2.9 31 15-45 3-34 (50)
5 3j20_Y 30S ribosomal protein S 92.9 0.093 3.2E-06 29.7 3.0 32 13-44 15-46 (50)
6 2jr6_A UPF0434 protein NMA0874 92.5 0.095 3.2E-06 31.4 2.8 30 16-45 7-36 (68)
7 1x4u_A Zinc finger, FYVE domai 91.8 0.15 5E-06 31.1 3.1 43 2-53 6-48 (84)
8 1vq8_Z 50S ribosomal protein L 91.6 0.1 3.4E-06 32.5 2.2 32 15-46 25-56 (83)
9 3lrq_A E3 ubiquitin-protein li 90.5 0.078 2.7E-06 32.7 0.9 33 18-55 23-55 (100)
10 2k4x_A 30S ribosomal protein S 90.2 0.16 5.3E-06 29.3 2.0 33 13-45 14-46 (55)
11 2yw8_A RUN and FYVE domain-con 89.1 0.31 1.1E-05 29.5 2.9 35 17-53 19-53 (82)
12 2js4_A UPF0434 protein BB2007; 88.8 0.39 1.3E-05 28.8 3.1 31 16-46 7-37 (70)
13 2hf1_A Tetraacyldisaccharide-1 88.7 0.35 1.2E-05 28.9 2.9 29 17-45 8-36 (68)
14 2jrp_A Putative cytoplasmic pr 88.7 0.35 1.2E-05 30.1 2.9 36 18-55 3-43 (81)
15 2pk7_A Uncharacterized protein 88.3 0.46 1.6E-05 28.5 3.2 29 17-45 8-36 (69)
16 1joc_A EEA1, early endosomal a 87.8 0.45 1.5E-05 31.1 3.2 35 17-53 69-103 (125)
17 1z2q_A LM5-1; membrane protein 87.3 0.42 1.5E-05 29.0 2.7 35 17-53 21-55 (84)
18 2jne_A Hypothetical protein YF 87.3 0.46 1.6E-05 30.8 2.9 36 18-55 33-73 (101)
19 2jny_A Uncharacterized BCR; st 86.1 0.62 2.1E-05 27.8 2.9 30 16-45 9-38 (67)
20 3t7l_A Zinc finger FYVE domain 85.2 0.77 2.6E-05 28.3 3.1 36 17-54 20-55 (90)
21 1wfh_A Zinc finger (AN1-like) 84.8 0.57 2E-05 28.0 2.3 35 13-52 11-45 (64)
22 3h0g_I DNA-directed RNA polyme 84.3 0.86 3E-05 29.2 3.1 30 16-45 3-36 (113)
23 3qt1_I DNA-directed RNA polyme 84.2 0.48 1.6E-05 31.6 1.9 33 13-45 20-56 (133)
24 2kpi_A Uncharacterized protein 83.5 0.99 3.4E-05 25.8 2.8 28 16-45 9-38 (56)
25 2ysj_A Tripartite motif-contai 83.3 0.28 9.5E-06 27.2 0.4 34 16-55 19-52 (63)
26 2ysl_A Tripartite motif-contai 83.2 0.36 1.2E-05 27.3 0.8 34 16-55 19-52 (73)
27 2kiz_A E3 ubiquitin-protein li 82.8 0.54 1.9E-05 26.4 1.5 39 14-55 11-49 (69)
28 2xzf_A Formamidopyrimidine-DNA 82.8 0.54 1.8E-05 34.2 1.8 27 17-43 242-270 (271)
29 1wii_A Hypothetical UPF0222 pr 82.7 0.81 2.8E-05 28.5 2.4 35 16-50 22-62 (85)
30 3ng2_A RNF4, snurf, ring finge 82.4 0.49 1.7E-05 26.5 1.2 42 14-55 7-49 (71)
31 3u6p_A Formamidopyrimidine-DNA 82.4 0.56 1.9E-05 34.3 1.8 26 17-42 245-272 (273)
32 1twf_I B12.6, DNA-directed RNA 82.4 0.86 3E-05 29.6 2.6 31 16-46 3-37 (122)
33 1k82_A Formamidopyrimidine-DNA 82.3 0.57 2E-05 34.1 1.8 26 17-42 240-267 (268)
34 1ee8_A MUTM (FPG) protein; bet 82.3 0.61 2.1E-05 34.0 2.0 27 17-43 235-263 (266)
35 1k3x_A Endonuclease VIII; hydr 82.3 0.58 2E-05 33.9 1.8 26 17-42 234-261 (262)
36 1wfl_A Zinc finger protein 216 82.2 0.58 2E-05 28.7 1.6 31 16-51 24-54 (74)
37 2ecm_A Ring finger and CHY zin 82.1 0.57 2E-05 25.0 1.4 38 16-55 4-41 (55)
38 2ct2_A Tripartite motif protei 81.9 0.36 1.2E-05 28.2 0.5 38 16-55 14-51 (88)
39 2apo_B Ribosome biogenesis pro 81.8 1.1 3.8E-05 26.3 2.6 15 14-28 3-17 (60)
40 1iym_A EL5; ring-H2 finger, ub 81.4 0.43 1.5E-05 25.5 0.7 37 17-55 5-41 (55)
41 2djb_A Polycomb group ring fin 80.8 0.34 1.2E-05 27.7 0.1 34 17-55 15-48 (72)
42 1wg2_A Zinc finger (AN1-like) 80.7 0.75 2.6E-05 27.4 1.6 33 15-52 13-45 (64)
43 1twf_L ABC10-alpha, DNA-direct 80.5 0.63 2.1E-05 28.0 1.3 28 16-44 27-54 (70)
44 1chc_A Equine herpes virus-1 r 80.1 0.62 2.1E-05 26.0 1.1 35 16-55 4-38 (68)
45 2akl_A PHNA-like protein PA012 79.8 1.1 3.7E-05 30.4 2.4 29 16-45 26-54 (138)
46 1dl6_A Transcription factor II 79.6 1.4 4.7E-05 25.2 2.5 28 16-43 10-38 (58)
47 2ckl_B Ubiquitin ligase protei 79.3 0.5 1.7E-05 31.2 0.6 32 19-55 56-87 (165)
48 2d8t_A Dactylidin, ring finger 79.1 0.67 2.3E-05 26.3 1.0 35 15-55 13-47 (71)
49 4ap4_A E3 ubiquitin ligase RNF 78.7 0.5 1.7E-05 29.2 0.4 16 40-55 96-111 (133)
50 2y43_A E3 ubiquitin-protein li 78.5 0.59 2E-05 28.2 0.7 33 18-55 23-55 (99)
51 1wfp_A Zinc finger (AN1-like) 78.1 0.99 3.4E-05 27.6 1.6 32 14-50 22-53 (74)
52 2ckl_A Polycomb group ring fin 77.9 0.59 2E-05 28.7 0.6 33 18-55 16-48 (108)
53 1x4j_A Ring finger protein 38; 77.7 0.72 2.5E-05 26.4 0.9 37 16-55 22-58 (75)
54 1wff_A Riken cDNA 2810002D23 p 77.2 1.3 4.5E-05 27.7 2.0 34 15-52 23-56 (85)
55 3m7n_A Putative uncharacterize 76.1 1.7 5.8E-05 29.7 2.5 24 19-44 142-165 (179)
56 2ep4_A Ring finger protein 24; 76.0 0.7 2.4E-05 26.2 0.5 37 16-55 14-50 (74)
57 3fl2_A E3 ubiquitin-protein li 75.8 0.81 2.8E-05 28.8 0.8 32 18-55 53-84 (124)
58 2egp_A Tripartite motif-contai 75.6 1 3.5E-05 25.7 1.1 34 17-56 12-45 (79)
59 3h0g_L DNA-directed RNA polyme 75.6 1.2 4.2E-05 26.3 1.5 31 16-47 20-50 (63)
60 2yur_A Retinoblastoma-binding 75.3 0.73 2.5E-05 26.5 0.4 34 17-55 15-48 (74)
61 1wfk_A Zinc finger, FYVE domai 74.9 2.6 8.9E-05 25.8 3.0 37 15-53 7-43 (88)
62 1z60_A TFIIH basal transcripti 74.7 0.38 1.3E-05 28.2 -0.9 31 18-51 16-46 (59)
63 2ect_A Ring finger protein 126 74.5 3.8 0.00013 23.3 3.5 38 15-55 13-50 (78)
64 2csy_A Zinc finger protein 183 73.4 0.98 3.4E-05 26.2 0.7 34 16-55 14-47 (81)
65 2xeu_A Ring finger protein 4; 73.3 0.89 3E-05 24.7 0.4 38 18-55 4-42 (64)
66 2ecn_A Ring finger protein 141 73.1 0.88 3E-05 25.5 0.4 33 16-55 14-46 (70)
67 1e4u_A Transcriptional repress 72.8 1.1 3.8E-05 26.7 0.8 37 16-54 10-46 (78)
68 3vk6_A E3 ubiquitin-protein li 72.2 0.69 2.3E-05 29.9 -0.2 38 18-55 2-49 (101)
69 4ayc_A E3 ubiquitin-protein li 71.9 1.1 3.9E-05 28.7 0.8 31 19-55 55-85 (138)
70 2ea6_A Ring finger protein 4; 71.8 0.76 2.6E-05 25.4 -0.1 40 16-55 14-54 (69)
71 1y02_A CARP2, FYVE-ring finger 71.5 2.3 8E-05 27.8 2.3 37 15-53 17-53 (120)
72 2ecj_A Tripartite motif-contai 71.3 0.55 1.9E-05 25.3 -0.8 34 16-55 14-47 (58)
73 3ztg_A E3 ubiquitin-protein li 70.3 0.79 2.7E-05 27.1 -0.2 34 17-55 13-46 (92)
74 1gh9_A 8.3 kDa protein (gene M 70.2 4 0.00014 24.4 2.9 36 17-54 4-39 (71)
75 1t1h_A Gspef-atpub14, armadill 69.4 1.4 4.7E-05 25.2 0.7 33 17-55 8-40 (78)
76 3l11_A E3 ubiquitin-protein li 68.9 1.9 6.3E-05 26.6 1.3 32 18-55 16-47 (115)
77 1lv3_A Hypothetical protein YA 68.6 2.7 9.1E-05 25.3 1.9 19 12-30 4-22 (68)
78 2l0b_A E3 ubiquitin-protein li 68.5 1 3.6E-05 27.0 0.0 37 16-55 39-75 (91)
79 3hct_A TNF receptor-associated 68.3 1.6 5.4E-05 27.2 0.8 32 18-55 19-50 (118)
80 2ecl_A Ring-box protein 2; RNF 68.1 2 6.7E-05 25.2 1.2 37 18-55 16-62 (81)
81 1k81_A EIF-2-beta, probable tr 68.0 3.9 0.00013 21.3 2.2 27 19-45 2-31 (36)
82 3knv_A TNF receptor-associated 67.8 1.2 4.3E-05 29.1 0.3 33 17-55 31-63 (141)
83 2ecv_A Tripartite motif-contai 66.1 1 3.5E-05 25.7 -0.4 33 17-55 19-51 (85)
84 1jm7_B BARD1, BRCA1-associated 66.1 2 6.9E-05 26.7 1.0 33 18-55 23-55 (117)
85 1dvp_A HRS, hepatocyte growth 66.0 3.7 0.00013 28.5 2.5 35 18-54 162-196 (220)
86 2ecw_A Tripartite motif-contai 65.9 0.89 3.1E-05 26.0 -0.6 33 17-55 19-51 (85)
87 1rmd_A RAG1; V(D)J recombinati 64.7 2.1 7E-05 26.4 0.8 32 18-55 24-55 (116)
88 2aus_D NOP10, ribosome biogene 64.6 5.6 0.00019 23.2 2.7 14 15-28 3-16 (60)
89 3w0f_A Endonuclease 8-like 3; 64.2 4.1 0.00014 30.2 2.5 26 18-43 252-281 (287)
90 1g25_A CDK-activating kinase a 62.6 0.98 3.3E-05 25.1 -0.9 35 18-54 4-39 (65)
91 3hcs_A TNF receptor-associated 61.6 2.5 8.4E-05 27.8 0.8 32 18-55 19-50 (170)
92 3mpx_A FYVE, rhogef and PH dom 61.1 1.7 5.9E-05 32.3 0.0 36 17-54 375-410 (434)
93 1jm7_A BRCA1, breast cancer ty 61.1 1.7 6E-05 26.3 0.0 32 18-55 22-53 (112)
94 1vk6_A NADH pyrophosphatase; 1 60.9 7.7 0.00026 27.8 3.4 29 16-44 106-134 (269)
95 2ecy_A TNF receptor-associated 59.2 3.7 0.00013 22.7 1.2 34 16-55 14-47 (66)
96 1v87_A Deltex protein 2; ring- 58.3 1.8 6.3E-05 26.5 -0.3 37 18-54 26-74 (114)
97 3zyq_A Hepatocyte growth facto 57.9 6.1 0.00021 27.7 2.4 35 18-54 165-199 (226)
98 3v2d_5 50S ribosomal protein L 57.3 6.2 0.00021 22.8 2.0 25 14-43 27-51 (60)
99 1qyp_A RNA polymerase II; tran 55.1 11 0.00038 20.8 2.8 10 17-26 15-24 (57)
100 3u5c_f 40S ribosomal protein S 54.7 5.9 0.0002 26.5 1.8 34 14-47 115-150 (152)
101 4esj_A Type-2 restriction enzy 54.3 5.6 0.00019 29.4 1.7 27 19-45 36-66 (257)
102 1z6u_A NP95-like ring finger p 54.2 3.7 0.00013 27.0 0.7 32 18-55 79-110 (150)
103 2f9y_B Acetyl-coenzyme A carbo 51.8 3.8 0.00013 30.3 0.5 32 14-45 21-53 (304)
104 2i5o_A DNA polymerase ETA; zin 51.7 8.5 0.00029 20.5 1.8 17 13-29 5-21 (39)
105 3k7a_M Transcription initiatio 51.0 6.7 0.00023 29.0 1.7 28 17-44 21-51 (345)
106 2zjr_Z 50S ribosomal protein L 49.5 9.1 0.00031 22.1 1.8 26 13-43 26-51 (60)
107 2co8_A NEDD9 interacting prote 49.2 18 0.0006 20.9 3.2 56 15-75 13-79 (82)
108 1x4l_A Skeletal muscle LIM-pro 47.3 3.3 0.00011 23.3 -0.4 15 15-29 3-17 (72)
109 1nui_A DNA primase/helicase; z 46.2 12 0.00041 26.0 2.4 24 17-43 14-41 (255)
110 2k5r_A Uncharacterized protein 46.1 13 0.00044 23.5 2.3 17 16-32 7-23 (97)
111 2xzm_9 RPS31E; ribosome, trans 45.9 11 0.00039 26.2 2.2 34 14-47 110-143 (189)
112 3twl_A Formamidopyrimidine-DNA 45.4 6.2 0.00021 29.3 0.8 27 17-43 247-277 (310)
113 1nee_A EIF-2-beta, probable tr 45.1 11 0.00039 25.0 2.0 27 18-44 103-132 (138)
114 2zet_C Melanophilin; complex, 45.1 9.4 0.00032 25.7 1.6 35 16-51 67-101 (153)
115 1vfy_A Phosphatidylinositol-3- 44.8 9 0.00031 22.3 1.3 33 18-52 12-44 (73)
116 1zbd_B Rabphilin-3A; G protein 44.3 11 0.00038 24.8 1.8 38 15-53 53-90 (134)
117 3j21_g 50S ribosomal protein L 44.3 7.6 0.00026 21.9 0.9 12 15-26 12-23 (51)
118 2e72_A POGO transposable eleme 43.4 11 0.00037 21.3 1.4 19 12-30 7-25 (49)
119 2lli_A Protein AIR2; RNA surve 43.0 9.9 0.00034 24.0 1.4 26 18-43 5-30 (124)
120 4a0k_B E3 ubiquitin-protein li 42.6 6.2 0.00021 25.4 0.4 37 18-55 49-98 (117)
121 1x4v_A Hypothetical protein LO 42.6 14 0.00048 21.5 1.9 29 15-48 10-40 (63)
122 3nyb_B Protein AIR2; polya RNA 39.7 8.2 0.00028 23.5 0.6 9 43-51 46-54 (83)
123 2f9i_B Acetyl-coenzyme A carbo 38.8 6.7 0.00023 28.7 0.1 32 14-45 27-59 (285)
124 2d74_B Translation initiation 38.3 13 0.00045 25.0 1.5 28 18-45 105-135 (148)
125 1x68_A FHL5 protein; four-and- 36.9 18 0.00062 20.3 1.8 13 17-29 5-17 (76)
126 1weo_A Cellulose synthase, cat 36.5 10 0.00034 24.1 0.6 22 13-34 54-75 (93)
127 1wjv_A Cell growth regulating 35.1 30 0.001 21.1 2.6 46 17-62 10-56 (79)
128 3dpl_R Ring-box protein 1; ubi 35.0 10 0.00034 23.7 0.4 37 18-55 38-87 (106)
129 3cw2_K Translation initiation 34.2 12 0.00042 24.9 0.8 27 18-44 104-133 (139)
130 2csz_A Synaptotagmin-like prot 33.9 23 0.00078 21.5 1.9 32 14-45 22-60 (76)
131 3k1f_M Transcription initiatio 33.7 26 0.00089 24.9 2.5 27 17-43 21-50 (197)
132 1wim_A KIAA0161 protein; ring 33.7 7.3 0.00025 23.1 -0.4 37 16-55 4-40 (94)
133 2ehe_A Four and A half LIM dom 33.3 24 0.00083 20.0 2.0 35 16-55 14-55 (82)
134 1bor_A Transcription factor PM 33.1 25 0.00086 18.7 1.9 30 17-52 6-35 (56)
135 1wfe_A Riken cDNA 2310008M20 p 32.7 34 0.0011 20.9 2.6 30 14-48 22-53 (86)
136 2lcq_A Putative toxin VAPC6; P 32.6 21 0.00072 23.4 1.8 13 18-30 149-161 (165)
137 2y1n_A E3 ubiquitin-protein li 32.2 12 0.0004 28.9 0.5 32 18-55 333-364 (389)
138 2kdx_A HYPA, hydrogenase/ureas 31.5 16 0.00054 23.0 0.9 26 17-44 73-99 (119)
139 4bbr_M Transcription initiatio 31.4 25 0.00085 26.1 2.2 27 17-43 21-50 (345)
140 3u50_C Telomerase-associated p 30.2 38 0.0013 23.1 2.8 26 17-43 42-67 (172)
141 2yre_A F-box only protein 30; 29.7 31 0.0011 21.9 2.1 31 16-46 16-49 (100)
142 2e9h_A EIF-5, eukaryotic trans 27.5 42 0.0014 22.8 2.6 28 18-45 104-136 (157)
143 3cc2_Z 50S ribosomal protein L 27.4 36 0.0012 22.2 2.2 29 16-44 59-87 (116)
144 2g2k_A EIF-5, eukaryotic trans 27.3 36 0.0012 23.4 2.3 28 18-45 97-129 (170)
145 2d8s_A Cellular modulator of i 26.8 8.6 0.00029 22.8 -0.9 13 18-30 59-71 (80)
146 3po3_S Transcription elongatio 26.7 57 0.0019 22.2 3.2 30 16-45 136-175 (178)
147 1wys_A Riken cDNA 2310008M20 p 26.7 62 0.0021 19.3 3.0 28 15-47 12-41 (75)
148 3cng_A Nudix hydrolase; struct 25.5 56 0.0019 21.1 2.9 26 17-42 3-32 (189)
149 2fiy_A Protein FDHE homolog; F 24.3 40 0.0014 25.0 2.2 37 16-52 181-231 (309)
150 2odx_A Cytochrome C oxidase po 23.8 46 0.0016 20.1 2.1 15 16-30 55-69 (80)
151 1l1o_C Replication protein A 7 23.5 68 0.0023 21.4 3.1 27 17-44 43-71 (181)
152 2zkr_2 60S ribosomal protein L 23.5 42 0.0014 21.3 1.9 24 17-43 16-39 (97)
153 2yu4_A E3 SUMO-protein ligase 23.4 27 0.00093 20.7 0.9 33 18-55 8-40 (94)
154 2ea5_A Cell growth regulator w 23.3 31 0.0011 19.4 1.1 41 14-54 12-57 (68)
155 2ct0_A Non-SMC element 1 homol 22.5 26 0.00088 20.6 0.7 37 14-55 12-48 (74)
156 2vje_B MDM4 protein; proto-onc 22.4 28 0.00095 19.2 0.8 12 18-29 45-56 (63)
157 3j21_i 50S ribosomal protein L 22.4 49 0.0017 20.3 2.0 28 17-44 35-62 (83)
158 3j20_W 30S ribosomal protein S 22.4 94 0.0032 18.1 3.1 33 18-50 16-49 (63)
159 1ffk_W Ribosomal protein L37AE 21.5 51 0.0018 19.6 1.9 30 15-44 25-54 (73)
160 2yho_A E3 ubiquitin-protein li 21.3 33 0.0011 19.8 1.0 13 17-29 49-61 (79)
161 1zfo_A LAsp-1; LIM domain, zin 21.3 32 0.0011 16.7 0.8 11 18-28 4-14 (31)
162 4ayb_P DNA-directed RNA polyme 21.3 54 0.0019 18.3 1.8 12 16-27 22-33 (48)
163 1qxf_A GR2, 30S ribosomal prot 21.3 1.1E+02 0.0036 18.1 3.2 33 18-50 8-41 (66)
164 1vyx_A ORF K3, K3RING; zinc-bi 21.0 12 0.00042 20.9 -1.0 11 18-28 48-58 (60)
165 3jyw_9 60S ribosomal protein L 20.7 47 0.0016 19.9 1.6 27 16-42 25-51 (72)
166 4glx_A DNA ligase; inhibitor, 20.7 33 0.0011 27.7 1.2 22 18-39 406-427 (586)
167 2a20_A Regulating synaptic mem 20.7 40 0.0014 19.8 1.2 38 16-55 8-45 (62)
168 1l8d_A DNA double-strand break 20.6 34 0.0012 20.8 1.0 12 17-28 47-58 (112)
169 4a17_Y RPL37A, 60S ribosomal p 20.6 65 0.0022 20.6 2.3 30 16-45 35-64 (103)
170 2ecg_A Baculoviral IAP repeat- 20.6 30 0.001 19.5 0.7 13 18-30 57-69 (75)
171 2l8e_A Polyhomeotic-like prote 20.4 73 0.0025 17.5 2.3 25 15-39 16-41 (49)
172 2jun_A Midline-1; B-BOX, TRIM, 20.3 24 0.00083 20.9 0.2 34 18-54 4-38 (101)
No 1
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.75 E-value=2.1e-19 Score=107.98 Aligned_cols=45 Identities=44% Similarity=1.080 Sum_probs=42.3
Q ss_pred cccCCceeCCCCCCceEeCCCcCeeeccc--cceeeeecccccccCC
Q psy1749 12 FDSELIKCCPMCSVPIEKDEGCAQMLCKR--CKHVFCWYCLASLDDD 56 (87)
Q Consensus 12 ~~~~~~k~CP~C~~~Iek~~GCnhm~C~~--C~~~FC~~C~~~~~~~ 56 (87)
|+.+++|+||+|+++|||++|||||+|+. |+.+|||+|+++|+.+
T Consensus 1 wi~~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred CccccceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 56788999999999999999999999998 9999999999999864
No 2
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=98.19 E-value=2.7e-06 Score=53.05 Aligned_cols=42 Identities=19% Similarity=0.532 Sum_probs=36.9
Q ss_pred cCCceeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 14 SELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 14 ~~~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
..+.+-||.|...|....+-..++|..|+..||+.|+.+|+.
T Consensus 22 ~~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~ 63 (86)
T 2ct7_A 22 DPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEE 63 (86)
T ss_dssp CCCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCT
T ss_pred CCCEeECcCCCchheecCCCCceEeCCCCCccccccCCchhh
Confidence 455667999999999888878899989999999999999955
No 3
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=97.88 E-value=5.4e-06 Score=51.20 Aligned_cols=41 Identities=20% Similarity=0.522 Sum_probs=36.4
Q ss_pred CCceeCCC--CCCceEeCCCcCeeecc-----ccceeeeecccccccC
Q psy1749 15 ELIKCCPM--CSVPIEKDEGCAQMLCK-----RCKHVFCWYCLASLDD 55 (87)
Q Consensus 15 ~~~k~CP~--C~~~Iek~~GCnhm~C~-----~C~~~FC~~C~~~~~~ 55 (87)
...+-||. |+..|...++...++|. .|+..||+.|+.+|-.
T Consensus 23 ~~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 23 MGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp CSSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred CCcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 34788998 99999999999999997 7999999999988854
No 4
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=94.16 E-value=0.042 Score=30.41 Aligned_cols=31 Identities=26% Similarity=0.654 Sum_probs=24.0
Q ss_pred CCceeCCCCCC-ceEeCCCcCeeeccccceee
Q psy1749 15 ELIKCCPMCSV-PIEKDEGCAQMLCKRCKHVF 45 (87)
Q Consensus 15 ~~~k~CP~C~~-~Iek~~GCnhm~C~~C~~~F 45 (87)
.....||.|+. .|+.+..-..+.|..||..+
T Consensus 3 ~~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 3 NKQKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp SSCCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred CccEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 34568999998 88887777789998776644
No 5
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=92.94 E-value=0.093 Score=29.66 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=23.4
Q ss_pred ccCCceeCCCCCCceEeCCCcCeeecccccee
Q psy1749 13 DSELIKCCPMCSVPIEKDEGCAQMLCKRCKHV 44 (87)
Q Consensus 13 ~~~~~k~CP~C~~~Iek~~GCnhm~C~~C~~~ 44 (87)
+....+.||+|+..+.-...=+...|..||..
T Consensus 15 v~~~~k~CP~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 15 VIRKNKFCPRCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp EECSSEECSSSCSSCEEEECSSEEECSSSCCE
T ss_pred EEEecccCCCCCCceEEecCCCeEECCCCCCE
Confidence 45677899999986555444477889888864
No 6
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=92.50 E-value=0.095 Score=31.44 Aligned_cols=30 Identities=17% Similarity=0.364 Sum_probs=25.7
Q ss_pred CceeCCCCCCceEeCCCcCeeeccccceee
Q psy1749 16 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVF 45 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~~GCnhm~C~~C~~~F 45 (87)
.+-.||.|+..++.....+.++|..|+..|
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 7 DILVCPVTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCCBCSSSCCBCEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 456799999999999888999998887766
No 7
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.84 E-value=0.15 Score=31.10 Aligned_cols=43 Identities=19% Similarity=0.422 Sum_probs=31.2
Q ss_pred cccccccCcccccCCceeCCCCCCceEeCCCcCeeeccccceeeeecccccc
Q psy1749 2 EPWFQMGGATFDSELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASL 53 (87)
Q Consensus 2 ~~w~~~~~~~~~~~~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~ 53 (87)
..|..|.. ...|..|+...... --.-.|+.||..||..|....
T Consensus 6 ~~W~pd~~-------~~~C~~C~~~F~~~--~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 6 SGRYPTNN-------FGNCTGCSATFSVL--KKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCSCSCCC-------CSSCSSSCCCCCSS--SCCEECSSSCCEECTTTSCEE
T ss_pred CccccCCC-------CCcCcCcCCccccc--hhhhhhcCCCcEEChhhcCCc
Confidence 45666555 37899999987432 334579999999999998543
No 8
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=91.57 E-value=0.1 Score=32.51 Aligned_cols=32 Identities=22% Similarity=0.477 Sum_probs=27.1
Q ss_pred CCceeCCCCCCceEeCCCcCeeeccccceeee
Q psy1749 15 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFC 46 (87)
Q Consensus 15 ~~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC 46 (87)
...-.||.|+....+..+-..+.|..|+..|-
T Consensus 25 ~~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 25 NEDHACPNCGEDRVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp HSCEECSSSCCEEEEEEETTEEEETTTCCEEE
T ss_pred cccCcCCCCCCcceeccCCCeEECCCCCCEec
Confidence 34568999999999998888999998888764
No 9
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=90.47 E-value=0.078 Score=32.67 Aligned_cols=33 Identities=21% Similarity=0.647 Sum_probs=26.8
Q ss_pred eeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 18 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 18 k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
-.||-|...+. +.+++..||+.||+.|...|-.
T Consensus 23 ~~C~IC~~~~~-----~p~~~~~CgH~FC~~Ci~~~~~ 55 (100)
T 3lrq_A 23 FRCFICMEKLR-----DARLCPHCSKLCCFSCIRRWLT 55 (100)
T ss_dssp TBCTTTCSBCS-----SEEECTTTCCEEEHHHHHHHHH
T ss_pred CCCccCCcccc-----CccccCCCCChhhHHHHHHHHH
Confidence 45999998876 3567677999999999988865
No 10
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=90.17 E-value=0.16 Score=29.25 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=24.0
Q ss_pred ccCCceeCCCCCCceEeCCCcCeeeccccceee
Q psy1749 13 DSELIKCCPMCSVPIEKDEGCAQMLCKRCKHVF 45 (87)
Q Consensus 13 ~~~~~k~CP~C~~~Iek~~GCnhm~C~~C~~~F 45 (87)
+....+.||+|+..+.-+..-+...|..|+..+
T Consensus 14 i~~~~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 14 LVRKHRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp CCCSSCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred EEEccccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 344578899999866544455688999888764
No 11
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=89.13 E-value=0.31 Score=29.51 Aligned_cols=35 Identities=23% Similarity=0.645 Sum_probs=26.6
Q ss_pred ceeCCCCCCceEeCCCcCeeeccccceeeeecccccc
Q psy1749 17 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASL 53 (87)
Q Consensus 17 ~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~ 53 (87)
...|..|+..... .--.-.|+.||..||..|....
T Consensus 19 ~~~C~~C~~~Fs~--~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 19 ATHCRQCEKEFSI--SRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCBCTTTCCBCBT--TBCCEECTTTCCEECSGGGCEE
T ss_pred CCcccCcCCcccC--ccccccCCCCCCEEChHHhCCe
Confidence 4689999998653 2334578899999999998654
No 12
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=88.85 E-value=0.39 Score=28.84 Aligned_cols=31 Identities=26% Similarity=0.544 Sum_probs=25.0
Q ss_pred CceeCCCCCCceEeCCCcCeeeccccceeee
Q psy1749 16 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFC 46 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC 46 (87)
.+-.||.|+..++....=+.++|..|+..|=
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YP 37 (70)
T 2js4_A 7 DILVCPVCKGRLEFQRAQAELVCNADRLAFP 37 (70)
T ss_dssp CCCBCTTTCCBEEEETTTTEEEETTTTEEEE
T ss_pred hheECCCCCCcCEEeCCCCEEEcCCCCceec
Confidence 3567999999999987767788987877663
No 13
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=88.73 E-value=0.35 Score=28.87 Aligned_cols=29 Identities=31% Similarity=0.761 Sum_probs=23.8
Q ss_pred ceeCCCCCCceEeCCCcCeeeccccceee
Q psy1749 17 IKCCPMCSVPIEKDEGCAQMLCKRCKHVF 45 (87)
Q Consensus 17 ~k~CP~C~~~Iek~~GCnhm~C~~C~~~F 45 (87)
+-.||.|+..++....=+.++|..|+..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 45799999999988776778898787766
No 14
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=88.69 E-value=0.35 Score=30.08 Aligned_cols=36 Identities=25% Similarity=0.687 Sum_probs=29.2
Q ss_pred eeCCCCCCceEeCCCcCeeecccccee-----eeecccccccC
Q psy1749 18 KCCPMCSVPIEKDEGCAQMLCKRCKHV-----FCWYCLASLDD 55 (87)
Q Consensus 18 k~CP~C~~~Iek~~GCnhm~C~~C~~~-----FC~~C~~~~~~ 55 (87)
..||.|+..|+.+++ +..|..|+.. ||-.|++++..
T Consensus 3 ~~CP~C~~~l~~~~~--~~~C~~C~~~~~~~afCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--TAHCETCAKDFSLQALCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEECSS--EEECTTTCCEEEEEEECSSSCSCCCE
T ss_pred CCCCCCCCccccCCC--ceECccccccCCCcccCcchhhHHHH
Confidence 579999999999887 5568888543 78899988875
No 15
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=88.33 E-value=0.46 Score=28.46 Aligned_cols=29 Identities=21% Similarity=0.604 Sum_probs=23.8
Q ss_pred ceeCCCCCCceEeCCCcCeeeccccceee
Q psy1749 17 IKCCPMCSVPIEKDEGCAQMLCKRCKHVF 45 (87)
Q Consensus 17 ~k~CP~C~~~Iek~~GCnhm~C~~C~~~F 45 (87)
+-.||.|+..++....=+.++|..|+..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 8 ILACPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp TCCCTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred heeCCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 45799999999988776778898787766
No 16
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=87.77 E-value=0.45 Score=31.08 Aligned_cols=35 Identities=23% Similarity=0.642 Sum_probs=26.8
Q ss_pred ceeCCCCCCceEeCCCcCeeeccccceeeeecccccc
Q psy1749 17 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASL 53 (87)
Q Consensus 17 ~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~ 53 (87)
...|+.|+..... .--.-.|+.||..||..|....
T Consensus 69 ~~~C~~C~~~Fs~--~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSV--TVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCS--SSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCcccc--ccccccCCCCCeEEChHHhCCc
Confidence 4789999997653 2344579999999999998654
No 17
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=87.30 E-value=0.42 Score=29.01 Aligned_cols=35 Identities=20% Similarity=0.517 Sum_probs=27.1
Q ss_pred ceeCCCCCCceEeCCCcCeeeccccceeeeecccccc
Q psy1749 17 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASL 53 (87)
Q Consensus 17 ~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~ 53 (87)
...|..|+...... --.-.|+.||..||..|....
T Consensus 21 ~~~C~~C~~~Fs~~--~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 21 APACNGCGCVFTTT--VRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCBCTTTCCBCCTT--SCCEECTTTCCEECTGGGCCE
T ss_pred CCCCcCcCCccccc--hhcccccCCCcEEChHHhCCe
Confidence 47899999986543 234579999999999998554
No 18
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=87.26 E-value=0.46 Score=30.77 Aligned_cols=36 Identities=28% Similarity=0.764 Sum_probs=29.8
Q ss_pred eeCCCCCCceEeCCCcCeeecccccee-----eeecccccccC
Q psy1749 18 KCCPMCSVPIEKDEGCAQMLCKRCKHV-----FCWYCLASLDD 55 (87)
Q Consensus 18 k~CP~C~~~Iek~~GCnhm~C~~C~~~-----FC~~C~~~~~~ 55 (87)
..||.|+..++..+| +..|..|+.. +|-.|++++..
T Consensus 33 ~~CP~Cq~eL~~~g~--~~hC~~C~~~f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--HARCRSCGEFIEMKALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEEEETT--EEEETTTCCEEEEEEECTTTCSBCEE
T ss_pred ccCccCCCcceecCC--EEECccccchhhccccCcchhhHHHH
Confidence 689999999999887 6679888765 57788888775
No 19
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=86.14 E-value=0.62 Score=27.77 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=24.2
Q ss_pred CceeCCCCCCceEeCCCcCeeeccccceee
Q psy1749 16 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVF 45 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~~GCnhm~C~~C~~~F 45 (87)
.+-.||.|+.+++....=+.+.|..|+..|
T Consensus 9 eiL~CP~ck~~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 9 EVLACPKDKGPLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CCCBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred HHhCCCCCCCcCeEeCCCCEEEcCCCCccc
Confidence 456799999999988776778888777666
No 20
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=85.15 E-value=0.77 Score=28.27 Aligned_cols=36 Identities=25% Similarity=0.522 Sum_probs=27.1
Q ss_pred ceeCCCCCCceEeCCCcCeeeccccceeeeeccccccc
Q psy1749 17 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLD 54 (87)
Q Consensus 17 ~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~ 54 (87)
...|..|+...... --.-.|+.||..||..|.....
T Consensus 20 ~~~C~~C~~~F~~~--~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 20 APNCMNCQVKFTFT--KRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCBCTTTCCBCCSS--SCCEECTTTCCEECGGGSCEEE
T ss_pred CCcCcCCCCcccch--hhCccccCCCCEECCcccCCee
Confidence 46799999877532 2345699999999999986554
No 21
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=84.84 E-value=0.57 Score=27.96 Aligned_cols=35 Identities=17% Similarity=0.499 Sum_probs=26.9
Q ss_pred ccCCceeCCCCCCceEeCCCcCeeeccccceeeeeccccc
Q psy1749 13 DSELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLAS 52 (87)
Q Consensus 13 ~~~~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~ 52 (87)
.+....+|..|+..+... -..|+ |+..||-.=.-+
T Consensus 11 ~k~~~~rC~~C~kkvgl~----~f~Cr-Cg~~FC~~HRy~ 45 (64)
T 1wfh_A 11 PPQRPNRCTVCRKRVGLT----GFMCR-CGTTFCGSHRYP 45 (64)
T ss_dssp CCSSCCCCTTTCCCCCTT----CEECS-SSCEECTTTCST
T ss_pred CCCcCCcChhhCCccCcc----CEEee-cCCEeccccCCc
Confidence 355678999999988776 48896 999999765433
No 22
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=84.27 E-value=0.86 Score=29.19 Aligned_cols=30 Identities=17% Similarity=0.410 Sum_probs=24.3
Q ss_pred CceeCCCCCCceEeCC----CcCeeeccccceee
Q psy1749 16 LIKCCPMCSVPIEKDE----GCAQMLCKRCKHVF 45 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~~----GCnhm~C~~C~~~F 45 (87)
..+.||.|+.++.... +.+.+.|+.|++.+
T Consensus 3 ~m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 3 NFQYCIECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCCSSSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred cceeCcCCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 3578999999986653 57789999999877
No 23
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=84.25 E-value=0.48 Score=31.58 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=24.7
Q ss_pred ccCCceeCCCCCCceEeCC----CcCeeeccccceee
Q psy1749 13 DSELIKCCPMCSVPIEKDE----GCAQMLCKRCKHVF 45 (87)
Q Consensus 13 ~~~~~k~CP~C~~~Iek~~----GCnhm~C~~C~~~F 45 (87)
.....+.||.|+.++.-.+ +...+.|+.|++++
T Consensus 20 ~~~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 20 HMTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp --CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred cccCCeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 3456899999999875442 57789999999865
No 24
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=83.47 E-value=0.99 Score=25.83 Aligned_cols=28 Identities=32% Similarity=0.972 Sum_probs=22.0
Q ss_pred CceeCCCCCCceEeCCCcCeeecc--ccceee
Q psy1749 16 LIKCCPMCSVPIEKDEGCAQMLCK--RCKHVF 45 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~~GCnhm~C~--~C~~~F 45 (87)
.+-.||.|+..++... +.+.|. .|+..|
T Consensus 9 ~iL~CP~c~~~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 9 EILACPACHAPLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp TSCCCSSSCSCEEEET--TEEEECSSSCCCEE
T ss_pred hheeCCCCCCcceecC--CEEEcCCcCCCcEE
Confidence 4458999999998887 778887 776655
No 25
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.33 E-value=0.28 Score=27.24 Aligned_cols=34 Identities=26% Similarity=0.735 Sum_probs=25.6
Q ss_pred CceeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 16 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
....||-|...+.. .++-. ||+.||..|...|-.
T Consensus 19 ~~~~C~IC~~~~~~-----p~~~~-CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 19 EEVICPICLDILQK-----PVTID-CGHNFCLKCITQIGE 52 (63)
T ss_dssp CCCBCTTTCSBCSS-----CEECT-TSSEECHHHHHHHHH
T ss_pred cCCCCCcCCchhCC-----eEEeC-CCCcchHHHHHHHHH
Confidence 34579999887763 34434 999999999988865
No 26
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.18 E-value=0.36 Score=27.33 Aligned_cols=34 Identities=24% Similarity=0.700 Sum_probs=25.9
Q ss_pred CceeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 16 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
....||-|...+. +.++-. ||+.||..|...|-.
T Consensus 19 ~~~~C~IC~~~~~-----~~~~~~-CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 19 EEVICPICLDILQ-----KPVTID-CGHNFCLKCITQIGE 52 (73)
T ss_dssp CCCBCTTTCSBCS-----SEEECT-TCCEEEHHHHHHHCS
T ss_pred cCCEeccCCcccC-----CeEEcC-CCChhhHHHHHHHHH
Confidence 3457999998766 234444 999999999988875
No 27
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=82.81 E-value=0.54 Score=26.39 Aligned_cols=39 Identities=21% Similarity=0.402 Sum_probs=27.2
Q ss_pred cCCceeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 14 SELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 14 ~~~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
......||-|...++... . .....|++.||..|...|-.
T Consensus 11 ~~~~~~C~IC~~~~~~~~--~-~~~~~C~H~fc~~Ci~~~~~ 49 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGE--D-VRRLPCMHLFHQVCVDQWLI 49 (69)
T ss_dssp TTCCCSBTTTTBCCCSSS--C-EEECTTSCEEEHHHHHHHHH
T ss_pred CCCCCCCeeCCccccCCC--c-EEEeCCCCHHHHHHHHHHHH
Confidence 345567999988775332 2 23334999999999988865
No 28
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=82.79 E-value=0.54 Score=34.24 Aligned_cols=27 Identities=26% Similarity=0.610 Sum_probs=22.3
Q ss_pred ceeCCCCCCceEeC--CCcCeeeccccce
Q psy1749 17 IKCCPMCSVPIEKD--EGCAQMLCKRCKH 43 (87)
Q Consensus 17 ~k~CP~C~~~Iek~--~GCnhm~C~~C~~ 43 (87)
.++||.|+.+|++. +|-+-..|+.|+.
T Consensus 242 G~pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 242 GEKCSRCGAEIQKIKVAGRGTHFCPVCQQ 270 (271)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTSC
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCCC
Confidence 37899999999997 6777778887864
No 29
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=82.73 E-value=0.81 Score=28.49 Aligned_cols=35 Identities=17% Similarity=0.420 Sum_probs=25.7
Q ss_pred CceeCCCCCCc------eEeCCCcCeeeccccceeeeeccc
Q psy1749 16 LIKCCPMCSVP------IEKDEGCAQMLCKRCKHVFCWYCL 50 (87)
Q Consensus 16 ~~k~CP~C~~~------Iek~~GCnhm~C~~C~~~FC~~C~ 50 (87)
..-.||.|+.. |.+..|-.++.|..|+..|=..-.
T Consensus 22 t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~ 62 (85)
T 1wii_A 22 TQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPIT 62 (85)
T ss_dssp SCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEECC
T ss_pred CeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEeccC
Confidence 34569999876 444678888999989888855433
No 30
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=82.42 E-value=0.49 Score=26.52 Aligned_cols=42 Identities=24% Similarity=0.509 Sum_probs=28.8
Q ss_pred cCCceeCCCCCCceEeC-CCcCeeeccccceeeeecccccccC
Q psy1749 14 SELIKCCPMCSVPIEKD-EGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 14 ~~~~k~CP~C~~~Iek~-~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
......||-|...+... .+=..+.-..||+.||..|...|-.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~ 49 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 49 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH
Confidence 34557799999887653 1112333445999999999988865
No 31
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=82.42 E-value=0.56 Score=34.26 Aligned_cols=26 Identities=38% Similarity=0.832 Sum_probs=21.6
Q ss_pred ceeCCCCCCceEeC--CCcCeeeccccc
Q psy1749 17 IKCCPMCSVPIEKD--EGCAQMLCKRCK 42 (87)
Q Consensus 17 ~k~CP~C~~~Iek~--~GCnhm~C~~C~ 42 (87)
.++||.|+++|++. +|-+-..|+.|+
T Consensus 245 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 245 GNPCKRCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred cCCCCCCCCeEEEEEECCCCeEECCCCC
Confidence 37999999999985 677777888776
No 32
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=82.40 E-value=0.86 Score=29.57 Aligned_cols=31 Identities=16% Similarity=0.337 Sum_probs=24.9
Q ss_pred CceeCCCCCCceEeC----CCcCeeeccccceeee
Q psy1749 16 LIKCCPMCSVPIEKD----EGCAQMLCKRCKHVFC 46 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~----~GCnhm~C~~C~~~FC 46 (87)
..+.||.|+.++.-. .+-+.+.|+.|++.+=
T Consensus 3 ~~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~ 37 (122)
T 1twf_I 3 TFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEE 37 (122)
T ss_dssp CCCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEE
T ss_pred CCCcccccCccCcccccCcCCCCEEECCcCCCeee
Confidence 458899999988754 5678899999998764
No 33
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=82.31 E-value=0.57 Score=34.08 Aligned_cols=26 Identities=27% Similarity=0.724 Sum_probs=21.6
Q ss_pred ceeCCCCCCceEeC--CCcCeeeccccc
Q psy1749 17 IKCCPMCSVPIEKD--EGCAQMLCKRCK 42 (87)
Q Consensus 17 ~k~CP~C~~~Iek~--~GCnhm~C~~C~ 42 (87)
.++||.|+.+|++. +|-+-..|+.|+
T Consensus 240 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 240 GEPCRVCGTPIVATKHAQRATFYCRQCQ 267 (268)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCC
Confidence 37899999999997 677777788776
No 34
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=82.31 E-value=0.61 Score=33.97 Aligned_cols=27 Identities=30% Similarity=0.780 Sum_probs=22.0
Q ss_pred ceeCCCCCCceEeC--CCcCeeeccccce
Q psy1749 17 IKCCPMCSVPIEKD--EGCAQMLCKRCKH 43 (87)
Q Consensus 17 ~k~CP~C~~~Iek~--~GCnhm~C~~C~~ 43 (87)
.++||.|+.+|++. +|-+-..|+.|+.
T Consensus 235 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 235 GLPCPACGRPVERRVVAGRGTHFCPTCQG 263 (266)
T ss_dssp TSBCTTTCCBCEEEESSSCEEEECTTTTT
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCCC
Confidence 37899999999996 6777777887764
No 35
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=82.25 E-value=0.58 Score=33.91 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=21.7
Q ss_pred ceeCCCCCCceEeC--CCcCeeeccccc
Q psy1749 17 IKCCPMCSVPIEKD--EGCAQMLCKRCK 42 (87)
Q Consensus 17 ~k~CP~C~~~Iek~--~GCnhm~C~~C~ 42 (87)
.++||.|+.+|++. +|-+-..|+.|+
T Consensus 234 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 234 GEPCERCGSIIEKTTLSSRPFYWCPGCQ 261 (262)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred cCCCCCCCCEeEEEEECCCCeEECCCCC
Confidence 36899999999986 677778888776
No 36
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=82.20 E-value=0.58 Score=28.68 Aligned_cols=31 Identities=23% Similarity=0.525 Sum_probs=24.6
Q ss_pred CceeCCCCCCceEeCCCcCeeeccccceeeeecccc
Q psy1749 16 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLA 51 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~ 51 (87)
...+|..|+..|++.+ ..|+ |+..||-.=..
T Consensus 24 ~~nRC~~CrKkvgL~g----f~Cr-Cg~~FCs~HRy 54 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTG----FDCR-CGNLFCGLHRY 54 (74)
T ss_dssp CTTBCSSSCCBCGGGC----EECT-TSCEECSSSCS
T ss_pred cCCcChhhCCcccccC----eecC-CCCEechhcCC
Confidence 4458999999988763 8999 99999975443
No 37
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=82.12 E-value=0.57 Score=24.97 Aligned_cols=38 Identities=18% Similarity=0.397 Sum_probs=26.7
Q ss_pred CceeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 16 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
....||-|...+...+ ..+.-..|++.||..|...|-.
T Consensus 4 ~~~~C~IC~~~~~~~~--~~~~~~~CgH~fc~~Ci~~~~~ 41 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSR--VVAHVLPCGHLLHRTCYEEMLK 41 (55)
T ss_dssp CCCSCTTTCCCCCTTT--SCEEECTTSCEEETTHHHHHHH
T ss_pred CCCcCcccChhhcCCC--cCeEecCCCCcccHHHHHHHHH
Confidence 3467999988775322 2344445999999999988865
No 38
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.89 E-value=0.36 Score=28.18 Aligned_cols=38 Identities=26% Similarity=0.594 Sum_probs=26.3
Q ss_pred CceeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 16 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
....||-|...+...... .+.-. ||+.||..|...|-.
T Consensus 14 ~~~~C~IC~~~~~~~~~~-~~~~~-CgH~fC~~Ci~~~~~ 51 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLR-PKLLH-CGHTICRQCLEKLLA 51 (88)
T ss_dssp SCCBCTTTCCBCCTTSSC-EEECS-SSCEEEHHHHHHHHH
T ss_pred CCCCCccCCccccccCCC-eEECC-CCChhhHHHHHHHHH
Confidence 345699999887654321 23334 999999999988864
No 39
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=81.77 E-value=1.1 Score=26.30 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=11.9
Q ss_pred cCCceeCCCCCCceE
Q psy1749 14 SELIKCCPMCSVPIE 28 (87)
Q Consensus 14 ~~~~k~CP~C~~~Ie 28 (87)
+...+.||+|++..-
T Consensus 3 ks~mr~C~~CgvYTL 17 (60)
T 2apo_B 3 EMRMKKCPKCGLYTL 17 (60)
T ss_dssp CCCCEECTTTCCEES
T ss_pred hhhceeCCCCCCEec
Confidence 456799999988765
No 40
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=81.44 E-value=0.43 Score=25.55 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=26.8
Q ss_pred ceeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 17 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 17 ~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
...||-|...++..+. .+.-..|++.||..|...|-.
T Consensus 5 ~~~C~IC~~~~~~~~~--~~~~~~C~H~f~~~Ci~~w~~ 41 (55)
T 1iym_A 5 GVECAVCLAELEDGEE--ARFLPRCGHGFHAECVDMWLG 41 (55)
T ss_dssp SCCCTTTCCCCCTTSC--CEECSSSCCEECTTHHHHTTT
T ss_pred CCcCccCCccccCCCc--eEECCCCCCcccHHHHHHHHH
Confidence 4579999888765443 223335999999999998875
No 41
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.80 E-value=0.34 Score=27.68 Aligned_cols=34 Identities=21% Similarity=0.459 Sum_probs=24.2
Q ss_pred ceeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 17 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 17 ~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
...||-|...+.. .++-..||+.||..|...|-.
T Consensus 15 ~~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~ 48 (72)
T 2djb_A 15 YILCSICKGYLID-----ATTITECLHTFCKSCIVRHFY 48 (72)
T ss_dssp GGSCTTTSSCCSS-----CEECSSSCCEECHHHHHHHHH
T ss_pred CCCCCCCChHHHC-----cCEECCCCCHHHHHHHHHHHH
Confidence 4579999887754 344435888888888877754
No 42
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=80.69 E-value=0.75 Score=27.44 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=24.9
Q ss_pred CCceeCCCCCCceEeCCCcCeeeccccceeeeeccccc
Q psy1749 15 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLAS 52 (87)
Q Consensus 15 ~~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~ 52 (87)
....+|..|+..+... -..|+ |+..||-.=.-+
T Consensus 13 ~~~~rC~~C~kkvgl~----~f~Cr-Cg~~FC~~HR~~ 45 (64)
T 1wg2_A 13 RPNNRCFSCNKKVGVM----GFKCK-CGSTFCGSHRYP 45 (64)
T ss_dssp CCSCSCTTTCCCCTTS----CEECT-TSCEECSSSCSS
T ss_pred CcCCcChhhCCccccc----CeEee-cCCEecccCCCc
Confidence 4557899999987765 48895 999999764433
No 43
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=80.51 E-value=0.63 Score=27.97 Aligned_cols=28 Identities=29% Similarity=0.584 Sum_probs=19.9
Q ss_pred CceeCCCCCCceEeCCCcCeeecccccee
Q psy1749 16 LIKCCPMCSVPIEKDEGCAQMLCKRCKHV 44 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~~GCnhm~C~~C~~~ 44 (87)
-.-.|+.|+..++..++ +-+.|+.||+.
T Consensus 27 v~Y~C~~CG~~~e~~~~-d~irCp~CG~R 54 (70)
T 1twf_L 27 LKYICAECSSKLSLSRT-DAVRCKDCGHR 54 (70)
T ss_dssp CCEECSSSCCEECCCTT-STTCCSSSCCC
T ss_pred EEEECCCCCCcceeCCC-CCccCCCCCce
Confidence 33469999999887744 55678777764
No 44
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=80.09 E-value=0.62 Score=26.00 Aligned_cols=35 Identities=23% Similarity=0.675 Sum_probs=23.9
Q ss_pred CceeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 16 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
....||-|...+.. ...-..||+.||..|...|-.
T Consensus 4 ~~~~C~IC~~~~~~-----~~~~~~C~H~fc~~Ci~~~~~ 38 (68)
T 1chc_A 4 VAERCPICLEDPSN-----YSMALPCLHAFCYVCITRWIR 38 (68)
T ss_dssp CCCCCSSCCSCCCS-----CEEETTTTEEESTTHHHHHHH
T ss_pred CCCCCeeCCccccC-----CcEecCCCCeeHHHHHHHHHh
Confidence 34679999888652 123334888888888877754
No 45
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=79.75 E-value=1.1 Score=30.41 Aligned_cols=29 Identities=24% Similarity=0.803 Sum_probs=24.4
Q ss_pred CceeCCCCCCceEeCCCcCeeeccccceee
Q psy1749 16 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVF 45 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~~GCnhm~C~~C~~~F 45 (87)
..-.||+|.....-.+|=. +.|+.|+++|
T Consensus 26 ~lP~CP~C~seytYeDg~l-~vCPeC~hEW 54 (138)
T 2akl_A 26 TLPPCPQCNSEYTYEDGAL-LVCPECAHEW 54 (138)
T ss_dssp CSCCCTTTCCCCCEECSSS-EEETTTTEEE
T ss_pred cCCCCCCCCCcceEecCCe-EECCcccccc
Confidence 4578999999988888754 7899999998
No 46
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=79.59 E-value=1.4 Score=25.24 Aligned_cols=28 Identities=21% Similarity=0.424 Sum_probs=18.7
Q ss_pred CceeCCCCCC-ceEeCCCcCeeeccccce
Q psy1749 16 LIKCCPMCSV-PIEKDEGCAQMLCKRCKH 43 (87)
Q Consensus 16 ~~k~CP~C~~-~Iek~~GCnhm~C~~C~~ 43 (87)
....||.|+. .|..+..-.-+.|..||.
T Consensus 10 ~~~~Cp~C~~~~lv~D~~~ge~vC~~CGl 38 (58)
T 1dl6_A 10 PRVTCPNHPDAILVEDYRAGDMICPECGL 38 (58)
T ss_dssp SCCSBTTBSSSCCEECSSSCCEECTTTCC
T ss_pred ccccCcCCCCCceeEeCCCCeEEeCCCCC
Confidence 3457999986 566655555677776654
No 47
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=79.33 E-value=0.5 Score=31.20 Aligned_cols=32 Identities=31% Similarity=0.736 Sum_probs=24.5
Q ss_pred eCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 19 CCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 19 ~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
.||-|...+.. .++...||+.||..|...|-.
T Consensus 56 ~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~ 87 (165)
T 2ckl_B 56 MCPICLDMLKN-----TMTTKECLHRFCADCIITALR 87 (165)
T ss_dssp BCTTTSSBCSS-----EEEETTTCCEEEHHHHHHHHH
T ss_pred CCcccChHhhC-----cCEeCCCCChhHHHHHHHHHH
Confidence 79999888763 455544899999988877754
No 48
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.11 E-value=0.67 Score=26.34 Aligned_cols=35 Identities=26% Similarity=0.635 Sum_probs=25.7
Q ss_pred CCceeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 15 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 15 ~~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
.....||-|...+.. .+.-. |++.||..|...|-.
T Consensus 13 ~~~~~C~IC~~~~~~-----~~~~~-CgH~fC~~Ci~~~~~ 47 (71)
T 2d8t_A 13 LTVPECAICLQTCVH-----PVSLP-CKHVFCYLCVKGASW 47 (71)
T ss_dssp SSCCBCSSSSSBCSS-----EEEET-TTEEEEHHHHHHCTT
T ss_pred CCCCCCccCCcccCC-----CEEcc-CCCHHHHHHHHHHHH
Confidence 445679999877643 24444 999999999988765
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=78.70 E-value=0.5 Score=29.25 Aligned_cols=16 Identities=44% Similarity=0.905 Sum_probs=14.1
Q ss_pred ccceeeeecccccccC
Q psy1749 40 RCKHVFCWYCLASLDD 55 (87)
Q Consensus 40 ~C~~~FC~~C~~~~~~ 55 (87)
.||+.||+.|...|-.
T Consensus 96 ~CgH~fc~~Ci~~~~~ 111 (133)
T 4ap4_A 96 ECGHVFCSQCLRDSLK 111 (133)
T ss_dssp TTSBEEEHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHH
Confidence 4999999999998865
No 50
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=78.53 E-value=0.59 Score=28.22 Aligned_cols=33 Identities=21% Similarity=0.599 Sum_probs=25.3
Q ss_pred eeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 18 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 18 k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
-.||-|...+.. .++-..||+.||..|...|-.
T Consensus 23 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~ 55 (99)
T 2y43_A 23 LRCGICFEYFNI-----AMIIPQCSHNYCSLCIRKFLS 55 (99)
T ss_dssp TBCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHHT
T ss_pred CCcccCChhhCC-----cCEECCCCCHhhHHHHHHHHH
Confidence 469999887753 445545999999999988865
No 51
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=78.06 E-value=0.99 Score=27.64 Aligned_cols=32 Identities=19% Similarity=0.486 Sum_probs=24.8
Q ss_pred cCCceeCCCCCCceEeCCCcCeeeccccceeeeeccc
Q psy1749 14 SELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCL 50 (87)
Q Consensus 14 ~~~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~ 50 (87)
+....+|..|+..+... -..|+ |+..||-.=.
T Consensus 22 k~~~~RC~~C~kkvgL~----~f~Cr-Cg~~FCs~HR 53 (74)
T 1wfp_A 22 KSTATRCLSCNKKVGVT----GFKCR-CGSTFCGTHR 53 (74)
T ss_dssp TCCCCBCSSSCCBCTTT----CEECT-TSCEECTTTC
T ss_pred cccCccchhhcCccccc----ceEec-cCCEeccccC
Confidence 45567899999888776 48896 9999996543
No 52
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=77.92 E-value=0.59 Score=28.71 Aligned_cols=33 Identities=21% Similarity=0.491 Sum_probs=25.6
Q ss_pred eeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 18 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 18 k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
-.||-|...+. +.++...||+.||..|...|-.
T Consensus 16 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~~ 48 (108)
T 2ckl_A 16 LMCVLCGGYFI-----DATTIIECLHSFCKTCIVRYLE 48 (108)
T ss_dssp TBCTTTSSBCS-----SEEEETTTCCEEEHHHHHHHHT
T ss_pred CCCccCChHHh-----CcCEeCCCCChhhHHHHHHHHH
Confidence 46999988775 2556535999999999988865
No 53
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.71 E-value=0.72 Score=26.39 Aligned_cols=37 Identities=19% Similarity=0.380 Sum_probs=26.7
Q ss_pred CceeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 16 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
....||-|...++... .+....|++.||..|...|-.
T Consensus 22 ~~~~C~IC~~~~~~~~---~~~~l~C~H~fh~~Ci~~w~~ 58 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQ---LLRVLPCNHEFHAKCVDKWLK 58 (75)
T ss_dssp SCCEETTTTEECCBTC---EEEEETTTEEEETTHHHHHHH
T ss_pred CCCCCeECCcccCCCC---eEEEECCCCHhHHHHHHHHHH
Confidence 4467999997776543 333345999999999988865
No 54
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=77.16 E-value=1.3 Score=27.71 Aligned_cols=34 Identities=21% Similarity=0.553 Sum_probs=25.4
Q ss_pred CCceeCCCCCCceEeCCCcCeeeccccceeeeeccccc
Q psy1749 15 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLAS 52 (87)
Q Consensus 15 ~~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~ 52 (87)
....+|..|+..+-.. +-+.|+ |+..||-.=.-+
T Consensus 23 ~~~~rC~~C~kkvgl~---~~f~Cr-Cg~~FC~~HRy~ 56 (85)
T 1wff_A 23 KIMKHCFLCGKKTGLA---TSFECR-CGNNFCASHRYA 56 (85)
T ss_dssp CCCCBCSSSCCBCSSS---SCEECT-TCCEECTTTCST
T ss_pred ccCccchhhCCeeccc---CCeEcC-CCCEecccCCCc
Confidence 4457899999887664 458998 999999754433
No 55
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=76.07 E-value=1.7 Score=29.65 Aligned_cols=24 Identities=21% Similarity=0.677 Sum_probs=20.6
Q ss_pred eCCCCCCceEeCCCcCeeecccccee
Q psy1749 19 CCPMCSVPIEKDEGCAQMLCKRCKHV 44 (87)
Q Consensus 19 ~CP~C~~~Iek~~GCnhm~C~~C~~~ 44 (87)
.|+.|+.+..+.+ ++|.|+.||..
T Consensus 142 ~~~~~g~~m~~~~--~~~~cp~~g~~ 165 (179)
T 3m7n_A 142 LCSNCKTEMVREG--DILKCPECGRV 165 (179)
T ss_dssp BCTTTCCBCEECS--SSEECSSSCCE
T ss_pred cccccCCceEECC--CEEECCCCCCE
Confidence 5899999998876 99999988764
No 56
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.98 E-value=0.7 Score=26.25 Aligned_cols=37 Identities=27% Similarity=0.624 Sum_probs=26.5
Q ss_pred CceeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 16 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
....||-|...+...... .... |++.||..|...|-.
T Consensus 14 ~~~~C~IC~~~~~~~~~~--~~~~-C~H~f~~~Ci~~~~~ 50 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDEL--GICP-CKHAFHRKCLIKWLE 50 (74)
T ss_dssp CSCBCSSSCCBCCSSSCE--EEET-TTEEEEHHHHHHHHH
T ss_pred CCCCCcCCCcccCCCCcE--EEcC-CCCEecHHHHHHHHH
Confidence 346799999887654332 2224 999999999988865
No 57
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=75.81 E-value=0.81 Score=28.75 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=23.7
Q ss_pred eeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 18 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 18 k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
-.||-|...+. +.++-. ||+.||..|...|-.
T Consensus 53 ~~C~IC~~~~~-----~p~~~~-CgH~fC~~Ci~~~~~ 84 (124)
T 3fl2_A 53 FQCICCQELVF-----RPITTV-CQHNVCKDCLDRSFR 84 (124)
T ss_dssp TBCTTTSSBCS-----SEEECT-TSCEEEHHHHHHHHH
T ss_pred CCCCcCChHHc-----CcEEee-CCCcccHHHHHHHHh
Confidence 35999988776 334434 999999999977764
No 58
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=75.60 E-value=1 Score=25.67 Aligned_cols=34 Identities=21% Similarity=0.663 Sum_probs=25.0
Q ss_pred ceeCCCCCCceEeCCCcCeeeccccceeeeecccccccCC
Q psy1749 17 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDDD 56 (87)
Q Consensus 17 ~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~~ 56 (87)
.-.||-|...+.. .++-. ||+.||..|...|-..
T Consensus 12 ~~~C~IC~~~~~~-----p~~l~-CgH~fC~~Ci~~~~~~ 45 (79)
T 2egp_A 12 EVTCPICLELLTE-----PLSLD-CGHSLCRACITVSNKE 45 (79)
T ss_dssp CCEETTTTEECSS-----CCCCS-SSCCCCHHHHSCCCCC
T ss_pred CCCCcCCCcccCC-----eeECC-CCCHHHHHHHHHHHHh
Confidence 4569999877643 23334 9999999999888763
No 59
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=75.58 E-value=1.2 Score=26.30 Aligned_cols=31 Identities=19% Similarity=0.528 Sum_probs=23.3
Q ss_pred CceeCCCCCCceEeCCCcCeeeccccceeeee
Q psy1749 16 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCW 47 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~ 47 (87)
-.=.|..|+..++...+ .-+.|++||+..=|
T Consensus 20 v~Y~C~~Cg~~~~l~~~-~~iRC~~CG~RILy 50 (63)
T 3h0g_L 20 MIYLCADCGARNTIQAK-EVIRCRECGHRVMY 50 (63)
T ss_dssp CCCBCSSSCCBCCCCSS-SCCCCSSSCCCCCB
T ss_pred eEEECCCCCCeeecCCC-CceECCCCCcEEEE
Confidence 34569999999998754 66889888876533
No 60
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=75.31 E-value=0.73 Score=26.51 Aligned_cols=34 Identities=15% Similarity=0.384 Sum_probs=24.6
Q ss_pred ceeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 17 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 17 ~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
.-.||-|...+.. .++-..||+.||..|...|-.
T Consensus 15 ~~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~ 48 (74)
T 2yur_A 15 ELLCLICKDIMTD-----AVVIPCCGNSYCDECIRTALL 48 (74)
T ss_dssp GGSCSSSCCCCTT-----CEECSSSCCEECTTHHHHHHH
T ss_pred CCCCcCCChHHhC-----CeEcCCCCCHHHHHHHHHHHH
Confidence 4579999877752 344333999999999988875
No 61
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=74.92 E-value=2.6 Score=25.81 Aligned_cols=37 Identities=27% Similarity=0.491 Sum_probs=28.2
Q ss_pred CCceeCCCCCCceEeCCCcCeeeccccceeeeecccccc
Q psy1749 15 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASL 53 (87)
Q Consensus 15 ~~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~ 53 (87)
.....|..|....... --.-.|+.||..||..|....
T Consensus 7 ~~~~~C~~C~~~F~~~--~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLF--KKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCSBCTTTCCBCCSS--SCEEECSSSCCEEETTTSCEE
T ss_pred CcCCCCcCcCCcccCc--cccccCCCCCCEEChhHcCCc
Confidence 5667899999976543 334578899999999998653
No 62
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=74.70 E-value=0.38 Score=28.16 Aligned_cols=31 Identities=26% Similarity=0.731 Sum_probs=24.2
Q ss_pred eeCCCCCCceEeCCCcCeeeccccceeeeecccc
Q psy1749 18 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLA 51 (87)
Q Consensus 18 k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~ 51 (87)
..|..|...+...+ ...|.+|+..||..|-.
T Consensus 16 ~~C~~C~~~~~~~~---~y~C~~C~~~FC~dCD~ 46 (59)
T 1z60_A 16 RFCYGCQGELKDQH---VYVCAVCQNVFCVDCDV 46 (59)
T ss_dssp CEETTTTEECTTSE---EECCTTTTCCBCHHHHH
T ss_pred CcccccCcccCCCc---cEECCccCcCcccchhH
Confidence 46999999984322 26799999999999863
No 63
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=74.48 E-value=3.8 Score=23.27 Aligned_cols=38 Identities=21% Similarity=0.372 Sum_probs=25.7
Q ss_pred CCceeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 15 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 15 ~~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
.....||-|...+..... -+. ..|++.||..|...|-.
T Consensus 13 ~~~~~C~IC~~~~~~~~~--~~~-~~C~H~fc~~Ci~~~~~ 50 (78)
T 2ect_A 13 GSGLECPVCKEDYALGES--VRQ-LPCNHLFHDSCIVPWLE 50 (78)
T ss_dssp SSSCCCTTTTSCCCTTSC--EEE-CTTSCEEETTTTHHHHT
T ss_pred CCCCCCeeCCccccCCCC--EEE-eCCCCeecHHHHHHHHH
Confidence 345679999887764431 122 23888999999988865
No 64
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.35 E-value=0.98 Score=26.19 Aligned_cols=34 Identities=21% Similarity=0.574 Sum_probs=25.0
Q ss_pred CceeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 16 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
.--.||-|...+.. .++ ..||+.||..|...|-.
T Consensus 14 ~~~~C~IC~~~~~~-----p~~-~~CgH~fC~~Ci~~~~~ 47 (81)
T 2csy_A 14 IPFRCFICRQAFQN-----PVV-TKCRHYFCESCALEHFR 47 (81)
T ss_dssp CCSBCSSSCSBCCS-----EEE-CTTSCEEEHHHHHHHHH
T ss_pred CCCCCcCCCchhcC-----eeE-ccCCCHhHHHHHHHHHH
Confidence 34579999888743 334 34999999999988764
No 65
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=73.27 E-value=0.89 Score=24.73 Aligned_cols=38 Identities=26% Similarity=0.569 Sum_probs=25.6
Q ss_pred eeCCCCCCceEeCC-CcCeeeccccceeeeecccccccC
Q psy1749 18 KCCPMCSVPIEKDE-GCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 18 k~CP~C~~~Iek~~-GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
..||-|...+.... +-..+.-..||+.||..|...|-.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~ 42 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 42 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHH
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHH
Confidence 46888888776531 112233335999999999988865
No 66
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.11 E-value=0.88 Score=25.55 Aligned_cols=33 Identities=24% Similarity=0.583 Sum_probs=24.4
Q ss_pred CceeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 16 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
....||-|...+.. +.- .|++.||..|...|-.
T Consensus 14 ~~~~C~IC~~~~~~------~~~-~CgH~fc~~Ci~~~~~ 46 (70)
T 2ecn_A 14 DEEECCICMDGRAD------LIL-PCAHSFCQKCIDKWSD 46 (70)
T ss_dssp CCCCCSSSCCSCCS------EEE-TTTEEECHHHHHHSSC
T ss_pred CCCCCeeCCcCccC------ccc-CCCCcccHHHHHHHHH
Confidence 34679999887653 333 4999999999988765
No 67
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=72.79 E-value=1.1 Score=26.65 Aligned_cols=37 Identities=27% Similarity=0.721 Sum_probs=25.4
Q ss_pred CceeCCCCCCceEeCCCcCeeeccccceeeeeccccccc
Q psy1749 16 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLD 54 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~ 54 (87)
.-..||-|..++...+ -..+.|. ||+.||..|...+.
T Consensus 10 ~~~~CpICle~~~~~d-~~~~p~~-CGH~fC~~Cl~~~~ 46 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDD-INFFPCT-CGYQICRFCWHRIR 46 (78)
T ss_dssp CCCBCTTTCCBCCTTT-TTCCSST-TSCCCCHHHHHHHT
T ss_pred cCCcCCccCccCcccc-ccccccC-CCCCcCHHHHHHHH
Confidence 3467999999775432 2334465 89999998887664
No 68
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=72.21 E-value=0.69 Score=29.89 Aligned_cols=38 Identities=24% Similarity=0.704 Sum_probs=26.5
Q ss_pred eeCCCCCCceEeCCC---cCeeeccccc-------eeeeecccccccC
Q psy1749 18 KCCPMCSVPIEKDEG---CAQMLCKRCK-------HVFCWYCLASLDD 55 (87)
Q Consensus 18 k~CP~C~~~Iek~~G---Cnhm~C~~C~-------~~FC~~C~~~~~~ 55 (87)
..|++|..||.-.+- |.|+.|..|- ...|..|.++...
T Consensus 2 hfC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 2 HFCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp CBCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred eecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 469999999976643 7777777664 3467777766654
No 69
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=71.94 E-value=1.1 Score=28.74 Aligned_cols=31 Identities=29% Similarity=0.704 Sum_probs=23.8
Q ss_pred eCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 19 CCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 19 ~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
.||-|...+. +.++-. ||+.||..|...|-.
T Consensus 55 ~C~iC~~~~~-----~~~~~~-CgH~fc~~Ci~~~~~ 85 (138)
T 4ayc_A 55 QCIICSEYFI-----EAVTLN-CAHSFCSYCINEWMK 85 (138)
T ss_dssp BCTTTCSBCS-----SEEEET-TSCEEEHHHHHHHTT
T ss_pred CCcccCcccC-----CceECC-CCCCccHHHHHHHHH
Confidence 5999988774 234445 999999999988765
No 70
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.85 E-value=0.76 Score=25.41 Aligned_cols=40 Identities=25% Similarity=0.487 Sum_probs=27.5
Q ss_pred CceeCCCCCCceEeCCC-cCeeeccccceeeeecccccccC
Q psy1749 16 LIKCCPMCSVPIEKDEG-CAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~~G-Cnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
....||-|...+..... -..+.-..||+.||..|...|-.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~ 54 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 54 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHH
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHH
Confidence 45679999988765421 12223335999999999988865
No 71
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=71.55 E-value=2.3 Score=27.76 Aligned_cols=37 Identities=24% Similarity=0.645 Sum_probs=25.4
Q ss_pred CCceeCCCCCCceEeCCCcCeeeccccceeeeecccccc
Q psy1749 15 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASL 53 (87)
Q Consensus 15 ~~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~ 53 (87)
.....|..|+...... --.-.|+.||..||..|....
T Consensus 17 ~~~~~C~~C~~~Fs~~--~RkHHCR~CG~ifC~~Cs~~~ 53 (120)
T 1y02_A 17 GLEPSCKSCGAHFANT--ARKQTCLDCKKNFCMTCSSQV 53 (120)
T ss_dssp ---CCCTTTCCCCSSG--GGCEECTTTCCEECGGGEEC-
T ss_pred cccCcccCcCCccccc--cccccCCCCCCeeCHHHhCCC
Confidence 4456899999986432 234578899999999997544
No 72
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.30 E-value=0.55 Score=25.26 Aligned_cols=34 Identities=21% Similarity=0.612 Sum_probs=25.1
Q ss_pred CceeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 16 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
....||-|...+... +. ..||+.||..|...|-.
T Consensus 14 ~~~~C~IC~~~~~~p-----~~-~~CgH~fC~~Ci~~~~~ 47 (58)
T 2ecj_A 14 VEASCSVCLEYLKEP-----VI-IECGHNFCKACITRWWE 47 (58)
T ss_dssp CCCBCSSSCCBCSSC-----CC-CSSCCCCCHHHHHHHTT
T ss_pred cCCCCccCCcccCcc-----Ee-CCCCCccCHHHHHHHHH
Confidence 345799998887642 33 24999999999988843
No 73
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=70.33 E-value=0.79 Score=27.11 Aligned_cols=34 Identities=15% Similarity=0.384 Sum_probs=23.9
Q ss_pred ceeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 17 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 17 ~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
--.||-|...+.. .++-..||+.||..|...|-.
T Consensus 13 ~~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~ 46 (92)
T 3ztg_A 13 ELLCLICKDIMTD-----AVVIPCCGNSYCDECIRTALL 46 (92)
T ss_dssp TTEETTTTEECSS-----CEECTTTCCEECHHHHHHHHH
T ss_pred CCCCCCCChhhcC-----ceECCCCCCHHHHHHHHHHHH
Confidence 4579999876652 333333899999999987753
No 74
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=70.18 E-value=4 Score=24.45 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=24.2
Q ss_pred ceeCCCCCCceEeCCCcCeeeccccceeeeeccccccc
Q psy1749 17 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLD 54 (87)
Q Consensus 17 ~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~ 54 (87)
+-+|| |+...--.++=.--.|+ ||.-+=..=+..+.
T Consensus 4 vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~k~rif~ 39 (71)
T 1gh9_A 4 IFRCD-CGRALYSREGAKTRKCV-CGRTVNVKDRRIFG 39 (71)
T ss_dssp EEEET-TSCCEEEETTCSEEEET-TTEEEECCSSSCBS
T ss_pred EEECC-CCCEEEEcCCCcEEECC-CCCeeeeceEEEEE
Confidence 45788 88887777777777777 77766554444433
No 75
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=69.44 E-value=1.4 Score=25.22 Aligned_cols=33 Identities=9% Similarity=0.191 Sum_probs=24.7
Q ss_pred ceeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 17 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 17 ~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
--.||-|...+.. .++-. ||+.||..|...|-.
T Consensus 8 ~~~C~IC~~~~~~-----Pv~~~-CgH~fc~~Ci~~~~~ 40 (78)
T 1t1h_A 8 YFRCPISLELMKD-----PVIVS-TGQTYERSSIQKWLD 40 (78)
T ss_dssp SSSCTTTSCCCSS-----EEEET-TTEEEEHHHHHHHHT
T ss_pred cCCCCCccccccC-----CEEcC-CCCeecHHHHHHHHH
Confidence 3569999887652 34445 999999999988765
No 76
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=68.86 E-value=1.9 Score=26.61 Aligned_cols=32 Identities=22% Similarity=0.540 Sum_probs=23.6
Q ss_pred eeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 18 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 18 k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
-.||-|...+.. -++= .||+.||..|...|-.
T Consensus 16 ~~C~iC~~~~~~-----p~~~-~CgH~fC~~Ci~~~~~ 47 (115)
T 3l11_A 16 CQCGICMEILVE-----PVTL-PCNHTLCKPCFQSTVE 47 (115)
T ss_dssp HBCTTTCSBCSS-----CEEC-TTSCEECHHHHCCCCC
T ss_pred CCCccCCcccCc-----eeEc-CCCCHHhHHHHHHHHh
Confidence 469999877653 2232 4999999999988865
No 77
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=68.56 E-value=2.7 Score=25.25 Aligned_cols=19 Identities=16% Similarity=0.483 Sum_probs=14.8
Q ss_pred cccCCceeCCCCCCceEeC
Q psy1749 12 FDSELIKCCPMCSVPIEKD 30 (87)
Q Consensus 12 ~~~~~~k~CP~C~~~Iek~ 30 (87)
|.....+.||.|+.+++-.
T Consensus 4 m~~~~~~~CP~Cgkp~~W~ 22 (68)
T 1lv3_A 4 MSETITVNCPTCGKTVVWG 22 (68)
T ss_dssp CCCCCEEECTTTCCEEECS
T ss_pred CCCCCcCcCCCCCCccccc
Confidence 4455778999999999843
No 78
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=68.54 E-value=1 Score=26.96 Aligned_cols=37 Identities=24% Similarity=0.540 Sum_probs=26.2
Q ss_pred CceeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 16 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
.-..||-|...++... ..+.- .|++.||..|...|-.
T Consensus 39 ~~~~C~IC~~~~~~~~--~~~~l-~C~H~Fh~~Ci~~wl~ 75 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGD--VATEL-PCHHYFHKPCVSIWLQ 75 (91)
T ss_dssp SCSEETTTTEECCTTC--EEEEE-TTTEEEEHHHHHHHHT
T ss_pred CCCCCcccChhhcCCC--cEEec-CCCChHHHHHHHHHHH
Confidence 3457999987776443 22233 4999999999998865
No 79
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=68.29 E-value=1.6 Score=27.25 Aligned_cols=32 Identities=25% Similarity=0.682 Sum_probs=23.3
Q ss_pred eeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 18 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 18 k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
-.||-|...+.. .++-. ||+.||..|...|-.
T Consensus 19 ~~C~IC~~~~~~-----p~~~~-CgH~fC~~Ci~~~~~ 50 (118)
T 3hct_A 19 YECPICLMALRE-----AVQTP-CGHRFCKACIIKSIR 50 (118)
T ss_dssp GBCTTTCSBCSS-----EEECT-TSCEEEHHHHHHHHH
T ss_pred CCCCcCChhhcC-----eEECC-cCChhhHHHHHHHHh
Confidence 479999987753 24444 888888888877754
No 80
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.15 E-value=2 Score=25.25 Aligned_cols=37 Identities=24% Similarity=0.670 Sum_probs=26.4
Q ss_pred eeCCCCCCceEe----------CCCcCeeeccccceeeeecccccccC
Q psy1749 18 KCCPMCSVPIEK----------DEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 18 k~CP~C~~~Iek----------~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
..|+-|...++. .+.+..+.-. |++.|+..|...|-.
T Consensus 16 ~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~ 62 (81)
T 2ecl_A 16 DTCAICRVQVMDACLRCQAENKQEDCVVVWGE-CNHSFHNCCMSLWVK 62 (81)
T ss_dssp SCBTTTTBCTTSCCTTHHHHTCTTTCCEEEET-TSCEEEHHHHHHHTT
T ss_pred CCCcccChhhhccCcccccccCCCceEEEeCC-CCCccChHHHHHHHH
Confidence 458888888765 2333333334 999999999999976
No 81
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=67.99 E-value=3.9 Score=21.28 Aligned_cols=27 Identities=26% Similarity=0.593 Sum_probs=19.8
Q ss_pred eCCCCCCc---eEeCCCcCeeeccccceee
Q psy1749 19 CCPMCSVP---IEKDEGCAQMLCKRCKHVF 45 (87)
Q Consensus 19 ~CP~C~~~---Iek~~GCnhm~C~~C~~~F 45 (87)
.||.|+.+ +.+..+=-.+.|..||+..
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAIR 31 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCcc
Confidence 48889876 5555667778898888764
No 82
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=67.76 E-value=1.2 Score=29.10 Aligned_cols=33 Identities=27% Similarity=0.734 Sum_probs=24.3
Q ss_pred ceeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 17 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 17 ~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
--.||-|...+.. -++.. ||+.||..|...|-.
T Consensus 31 ~~~C~IC~~~~~~-----pv~~~-CgH~FC~~Ci~~~~~ 63 (141)
T 3knv_A 31 KYLCSACRNVLRR-----PFQAQ-CGHRYCSFCLASILS 63 (141)
T ss_dssp GGBCTTTCSBCSS-----EEECT-TSCEEEHHHHHHHGG
T ss_pred CcCCCCCChhhcC-----cEECC-CCCccCHHHHHHHHh
Confidence 3469999987753 24544 999999999888754
No 83
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.14 E-value=1 Score=25.73 Aligned_cols=33 Identities=27% Similarity=0.696 Sum_probs=23.7
Q ss_pred ceeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 17 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 17 ~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
...||-|...+.. .+.- .||+.||..|...|-.
T Consensus 19 ~~~C~IC~~~~~~-----p~~~-~CgH~fC~~Ci~~~~~ 51 (85)
T 2ecv_A 19 EVTCPICLELLTQ-----PLSL-DCGHSFCQACLTANHK 51 (85)
T ss_dssp CCCCTTTCSCCSS-----CBCC-SSSCCBCTTHHHHHHH
T ss_pred CCCCCCCCcccCC-----ceeC-CCCCHHHHHHHHHHHH
Confidence 4579999988753 2233 4999999999887743
No 84
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=66.08 E-value=2 Score=26.68 Aligned_cols=33 Identities=21% Similarity=0.607 Sum_probs=22.2
Q ss_pred eeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 18 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 18 k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
-.||-|...+.. .++-..||+.||..|...|-.
T Consensus 23 ~~C~IC~~~~~~-----pv~~~~CgH~fC~~Ci~~~~~ 55 (117)
T 1jm7_B 23 LRCSRCTNILRE-----PVCLGGCEHIFCSNCVSDCIG 55 (117)
T ss_dssp TSCSSSCSCCSS-----CBCCCSSSCCBCTTTGGGGTT
T ss_pred CCCCCCChHhhC-----ccEeCCCCCHHHHHHHHHHhc
Confidence 469999887743 233313888888888877754
No 85
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=65.99 E-value=3.7 Score=28.52 Aligned_cols=35 Identities=29% Similarity=0.650 Sum_probs=26.2
Q ss_pred eeCCCCCCceEeCCCcCeeeccccceeeeeccccccc
Q psy1749 18 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLD 54 (87)
Q Consensus 18 k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~ 54 (87)
..|+.|+..... .--.-.|+.||..||..|.....
T Consensus 162 ~~C~~C~~~F~~--~~rrhhCr~CG~v~C~~Cs~~~~ 196 (220)
T 1dvp_A 162 RVCHRCRVEFTF--TNRKHHCRNCGQVFCGQCTAKQC 196 (220)
T ss_dssp SBCTTTCCBCCS--SSCCEECTTTCCEECSTTSCEEE
T ss_pred CccCCCCCccCC--cccccccCCcCCEEChHHhCCee
Confidence 579999987642 23345799999999999986543
No 86
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=65.94 E-value=0.89 Score=26.00 Aligned_cols=33 Identities=24% Similarity=0.698 Sum_probs=24.0
Q ss_pred ceeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 17 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 17 ~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
.-.||-|...+.. .+.-. |++.||..|...|-.
T Consensus 19 ~~~C~IC~~~~~~-----p~~~~-CgH~fC~~Ci~~~~~ 51 (85)
T 2ecw_A 19 EVTCPICLELLKE-----PVSAD-CNHSFCRACITLNYE 51 (85)
T ss_dssp TTSCTTTCSCCSS-----CEECT-TSCCBCHHHHHHHHH
T ss_pred CCCCcCCChhhCc-----ceeCC-CCCHHHHHHHHHHHH
Confidence 3469999887653 23444 999999999987754
No 87
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=64.66 E-value=2.1 Score=26.44 Aligned_cols=32 Identities=25% Similarity=0.695 Sum_probs=23.4
Q ss_pred eeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 18 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 18 k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
-.||-|...+.. .++- .||+.||..|...|-.
T Consensus 24 ~~C~IC~~~~~~-----p~~~-~CgH~fC~~Ci~~~~~ 55 (116)
T 1rmd_A 24 ISCQICEHILAD-----PVET-SCKHLFCRICILRCLK 55 (116)
T ss_dssp TBCTTTCSBCSS-----EEEC-TTSCEEEHHHHHHHHH
T ss_pred CCCCCCCcHhcC-----cEEc-CCCCcccHHHHHHHHh
Confidence 469999887753 3443 4999999999877754
No 88
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=64.63 E-value=5.6 Score=23.23 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=10.6
Q ss_pred CCceeCCCCCCceE
Q psy1749 15 ELIKCCPMCSVPIE 28 (87)
Q Consensus 15 ~~~k~CP~C~~~Ie 28 (87)
...+.||+|++..-
T Consensus 3 s~mr~C~~Cg~YTL 16 (60)
T 2aus_D 3 FRIRKCPKCGRYTL 16 (60)
T ss_dssp -CCEECTTTCCEES
T ss_pred ccceECCCCCCEEc
Confidence 45789999987765
No 89
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=64.22 E-value=4.1 Score=30.24 Aligned_cols=26 Identities=19% Similarity=0.510 Sum_probs=19.4
Q ss_pred eeCCCCCCceEeC--C--CcCeeeccccce
Q psy1749 18 KCCPMCSVPIEKD--E--GCAQMLCKRCKH 43 (87)
Q Consensus 18 k~CP~C~~~Iek~--~--GCnhm~C~~C~~ 43 (87)
++||.|+.+|++. + |-.-..|..|..
T Consensus 252 ~pC~~CGt~I~~~~~g~~gRsTyfCp~~~~ 281 (287)
T 3w0f_A 252 PNCDQCHSKITVCRFGENSRMTYFCPHCQK 281 (287)
T ss_dssp SBCTTTCCBCEEECSSTTCCCEEECTTTSC
T ss_pred CCCCCCCCEEEEEEecCCCCCEEECCCccc
Confidence 3899999999985 3 666666776654
No 90
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=62.65 E-value=0.98 Score=25.10 Aligned_cols=35 Identities=26% Similarity=0.577 Sum_probs=21.7
Q ss_pred eeCCCCCC-ceEeCCCcCeeeccccceeeeeccccccc
Q psy1749 18 KCCPMCSV-PIEKDEGCAQMLCKRCKHVFCWYCLASLD 54 (87)
Q Consensus 18 k~CP~C~~-~Iek~~GCnhm~C~~C~~~FC~~C~~~~~ 54 (87)
..||-|.. .+....- ..+. ..||+.||..|...|-
T Consensus 4 ~~C~IC~~~~~~~~~~-~~~~-~~CgH~fC~~Ci~~~~ 39 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSL-KLMV-NVCGHTLCESCVDLLF 39 (65)
T ss_dssp TCCSTTTTHHHHCSSC-CEEE-CTTCCCEEHHHHHHHH
T ss_pred CcCCcCCCCccCCCcc-Ceec-CCCCCHhHHHHHHHHH
Confidence 35888887 4433211 1122 2489999999988773
No 91
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=61.63 E-value=2.5 Score=27.80 Aligned_cols=32 Identities=25% Similarity=0.682 Sum_probs=24.3
Q ss_pred eeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 18 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 18 k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
-.||-|..++.. .+++. ||+.||..|...|-.
T Consensus 19 ~~C~IC~~~~~~-----pv~~~-CgH~fC~~Ci~~~~~ 50 (170)
T 3hcs_A 19 YECPICLMALRE-----AVQTP-CGHRFCKACIIKSIR 50 (170)
T ss_dssp GBCTTTCSBCSS-----EEECT-TSCEEEHHHHHHHHH
T ss_pred CCCCCCChhhcC-----cEECC-CCCHHHHHHHHHHHH
Confidence 469999988753 35665 999999999877753
No 92
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=61.07 E-value=1.7 Score=32.32 Aligned_cols=36 Identities=17% Similarity=0.493 Sum_probs=0.0
Q ss_pred ceeCCCCCCceEeCCCcCeeeccccceeeeeccccccc
Q psy1749 17 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLD 54 (87)
Q Consensus 17 ~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~ 54 (87)
...|+.|+..+... -..-.|+.||..||..|.....
T Consensus 375 ~~~c~~c~~~f~~~--~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLT--LRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp --------------------------------------
T ss_pred CCcCCCcCCCCCCc--chhhhcccCcCEeehhhCCCee
Confidence 46799999877532 2235688899999999986443
No 93
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=61.06 E-value=1.7 Score=26.28 Aligned_cols=32 Identities=31% Similarity=0.897 Sum_probs=22.7
Q ss_pred eeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 18 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 18 k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
..||-|...+.. .++- .||+.||..|...|-.
T Consensus 22 ~~C~IC~~~~~~-----p~~~-~CgH~fC~~Ci~~~~~ 53 (112)
T 1jm7_A 22 LECPICLELIKE-----PVST-KCDHIFCKFCMLKLLN 53 (112)
T ss_dssp TSCSSSCCCCSS-----CCBC-TTSCCCCSHHHHHHHH
T ss_pred CCCcccChhhcC-----eEEC-CCCCHHHHHHHHHHHH
Confidence 469999887742 2232 4889999999877764
No 94
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=60.89 E-value=7.7 Score=27.84 Aligned_cols=29 Identities=24% Similarity=0.502 Sum_probs=23.6
Q ss_pred CceeCCCCCCceEeCCCcCeeecccccee
Q psy1749 16 LIKCCPMCSVPIEKDEGCAQMLCKRCKHV 44 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~~GCnhm~C~~C~~~ 44 (87)
..+.||.|+.+.+...+=..+.|..|+..
T Consensus 106 ~~~fC~~CG~~~~~~~~~~~~~C~~C~~~ 134 (269)
T 1vk6_A 106 SHKYCGYCGHEMYPSKTEWAMLCSHCRER 134 (269)
T ss_dssp TTSBCTTTCCBEEECSSSSCEEESSSSCE
T ss_pred cCCccccCCCcCccCCCceeeeCCCCCCE
Confidence 45889999999988877777888888653
No 95
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.21 E-value=3.7 Score=22.68 Aligned_cols=34 Identities=26% Similarity=0.507 Sum_probs=25.1
Q ss_pred CceeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 16 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
....||-|...+... +. ..||+.||..|...|-.
T Consensus 14 ~~~~C~IC~~~~~~p-----~~-~~CgH~fC~~Ci~~~~~ 47 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSP-----KQ-TECGHRFCESCMAALLS 47 (66)
T ss_dssp CCEECTTTCCEESSC-----CC-CSSSCCCCHHHHHHHHT
T ss_pred cCCCCCCCChHhcCe-----eE-CCCCCHHHHHHHHHHHH
Confidence 346799999877532 22 35999999999988864
No 96
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=58.25 E-value=1.8 Score=26.47 Aligned_cols=37 Identities=22% Similarity=0.509 Sum_probs=24.7
Q ss_pred eeCCCCCCceEeCCCc------------Ceeeccccceeeeeccccccc
Q psy1749 18 KCCPMCSVPIEKDEGC------------AQMLCKRCKHVFCWYCLASLD 54 (87)
Q Consensus 18 k~CP~C~~~Iek~~GC------------nhm~C~~C~~~FC~~C~~~~~ 54 (87)
..||=|...++...+. ..+.-..|++.||..|...|-
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl 74 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMY 74 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHH
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHH
Confidence 4799998887553321 112234588999999988886
No 97
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=57.93 E-value=6.1 Score=27.72 Aligned_cols=35 Identities=23% Similarity=0.628 Sum_probs=26.2
Q ss_pred eeCCCCCCceEeCCCcCeeeccccceeeeeccccccc
Q psy1749 18 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLD 54 (87)
Q Consensus 18 k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~ 54 (87)
..|..|+...... --.-.|+.||..||..|.....
T Consensus 165 ~~C~~C~~~F~~~--~RrhHCR~CG~v~C~~Cs~~~~ 199 (226)
T 3zyq_A 165 EECHRCRVQFGVM--TRKHHCRACGQIFCGKCSSKYS 199 (226)
T ss_dssp SBCTTTCCBCBTT--BCCEECTTTCCEECTTTCCEEE
T ss_pred CCCcCcCCCCCcc--ccccccCCCcCEeChhhcCCcc
Confidence 4799999876532 3345799999999999986543
No 98
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=57.25 E-value=6.2 Score=22.84 Aligned_cols=25 Identities=20% Similarity=0.568 Sum_probs=17.8
Q ss_pred cCCceeCCCCCCceEeCCCcCeeeccccce
Q psy1749 14 SELIKCCPMCSVPIEKDEGCAQMLCKRCKH 43 (87)
Q Consensus 14 ~~~~k~CP~C~~~Iek~~GCnhm~C~~C~~ 43 (87)
..+...||.|+.+.. .|-.|..||+
T Consensus 27 ~p~l~~c~~cGe~~~-----~H~vc~~CG~ 51 (60)
T 3v2d_5 27 PPTLVPCPECKAMKP-----PHTVCPECGY 51 (60)
T ss_dssp CCCCEECTTTCCEEC-----TTSCCTTTCE
T ss_pred CCceeECCCCCCeec-----ceEEcCCCCc
Confidence 456788999998765 5666666764
No 99
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=55.11 E-value=11 Score=20.83 Aligned_cols=10 Identities=30% Similarity=0.733 Sum_probs=7.7
Q ss_pred ceeCCCCCCc
Q psy1749 17 IKCCPMCSVP 26 (87)
Q Consensus 17 ~k~CP~C~~~ 26 (87)
..+||+|+..
T Consensus 15 ~~~Cp~Cg~~ 24 (57)
T 1qyp_A 15 KITCPKCGND 24 (57)
T ss_dssp ECCCTTTCCS
T ss_pred EeECCCCCCC
Confidence 4679999973
No 100
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=54.71 E-value=5.9 Score=26.45 Aligned_cols=34 Identities=18% Similarity=0.488 Sum_probs=25.9
Q ss_pred cCCceeCCC--CCCceEeCCCcCeeeccccceeeee
Q psy1749 14 SELIKCCPM--CSVPIEKDEGCAQMLCKRCKHVFCW 47 (87)
Q Consensus 14 ~~~~k~CP~--C~~~Iek~~GCnhm~C~~C~~~FC~ 47 (87)
.-.-+.||+ |+.-|.-...=+...|..|+.-+++
T Consensus 115 ~~~~~~c~~~~cg~g~fma~h~~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 115 TKLRRECSNPTCGAGVFLANHKDRLYCGKCHSVYKV 150 (152)
T ss_dssp ECCSCBCCSTTSCSSSBEEECSSCEEESSSSSCCEE
T ss_pred EECcCcCCCccCCCceEecccCCCcccCCCceEEEe
Confidence 344577999 9987776666678888888887765
No 101
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=54.33 E-value=5.6 Score=29.41 Aligned_cols=27 Identities=33% Similarity=0.893 Sum_probs=14.7
Q ss_pred eCCCCCC-ceEeCCC---cCeeeccccceee
Q psy1749 19 CCPMCSV-PIEKDEG---CAQMLCKRCKHVF 45 (87)
Q Consensus 19 ~CP~C~~-~Iek~~G---Cnhm~C~~C~~~F 45 (87)
.||+|+. ++.+-+- -.-..|..|+.+|
T Consensus 36 yCPnCG~~~l~~f~nN~PVaDF~C~~C~Eey 66 (257)
T 4esj_A 36 YCPNCGNNPLNHFENNRPVADFYCNHCSEEF 66 (257)
T ss_dssp CCTTTCCSSCEEC----CCCEEECTTTCCEE
T ss_pred cCCCCCChhhhhccCCCcccccccCCcchhh
Confidence 4999999 5655432 2224455555444
No 102
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=54.23 E-value=3.7 Score=27.00 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=23.3
Q ss_pred eeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 18 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 18 k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
-.||-|...+. +.++- .||+.||..|...|-.
T Consensus 79 ~~C~IC~~~~~-----~pv~~-~CgH~fC~~Ci~~~~~ 110 (150)
T 1z6u_A 79 FMCVCCQELVY-----QPVTT-ECFHNVCKDCLQRSFK 110 (150)
T ss_dssp TBCTTTSSBCS-----SEEEC-TTSCEEEHHHHHHHHH
T ss_pred CEeecCChhhc-----CCEEc-CCCCchhHHHHHHHHH
Confidence 46999988764 23443 4999999999877765
No 103
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=51.80 E-value=3.8 Score=30.27 Aligned_cols=32 Identities=19% Similarity=0.489 Sum_probs=24.6
Q ss_pred cCCceeCCCCCCceEeCC-CcCeeeccccceee
Q psy1749 14 SELIKCCPMCSVPIEKDE-GCAQMLCKRCKHVF 45 (87)
Q Consensus 14 ~~~~k~CP~C~~~Iek~~-GCnhm~C~~C~~~F 45 (87)
...|.+||+|+..|...+ .=+...|..|++++
T Consensus 21 ~~l~~kc~~~~~~~~~~~l~~~~~v~~~~~~~~ 53 (304)
T 2f9y_B 21 EGVWTKCDSCGQVLYRAELERNLEVCPKCDHHM 53 (304)
T ss_dssp --CEECCTTTCCCEETTHHHHTTTBCTTTCCBC
T ss_pred HHHHHhhhhccchhhHHHHHHHhCCCCCCCCCC
Confidence 356899999999999884 33778887788876
No 104
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=51.68 E-value=8.5 Score=20.47 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=12.3
Q ss_pred ccCCceeCCCCCCceEe
Q psy1749 13 DSELIKCCPMCSVPIEK 29 (87)
Q Consensus 13 ~~~~~k~CP~C~~~Iek 29 (87)
.......||+|+..|..
T Consensus 5 ~~~~~~~C~~C~~~i~~ 21 (39)
T 2i5o_A 5 AAEDQVPCEKCGSLVPV 21 (39)
T ss_dssp -CCCEEECTTTCCEEEG
T ss_pred CcCCCcccccccCcCCc
Confidence 34556789999998864
No 105
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=51.00 E-value=6.7 Score=29.05 Aligned_cols=28 Identities=29% Similarity=0.615 Sum_probs=19.2
Q ss_pred ceeCCCCCCc---eEeCCCcCeeecccccee
Q psy1749 17 IKCCPMCSVP---IEKDEGCAQMLCKRCKHV 44 (87)
Q Consensus 17 ~k~CP~C~~~---Iek~~GCnhm~C~~C~~~ 44 (87)
...||.|+.. |..+..=.-+.|..||.-
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~V 51 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLV 51 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCSCCCSSSCCC
T ss_pred CCcCcCCCCCCCceEEECCCCCEecCCCCeE
Confidence 5679999883 655555556777766653
No 106
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=49.49 E-value=9.1 Score=22.06 Aligned_cols=26 Identities=19% Similarity=0.530 Sum_probs=18.1
Q ss_pred ccCCceeCCCCCCceEeCCCcCeeeccccce
Q psy1749 13 DSELIKCCPMCSVPIEKDEGCAQMLCKRCKH 43 (87)
Q Consensus 13 ~~~~~k~CP~C~~~Iek~~GCnhm~C~~C~~ 43 (87)
...+...||.|+.+.. .|-.|..||.
T Consensus 26 ~~p~l~~c~~cG~~~~-----pH~vc~~CG~ 51 (60)
T 2zjr_Z 26 TAPNLTECPQCHGKKL-----SHHICPNCGY 51 (60)
T ss_dssp CCCCCEECTTTCCEEC-----TTBCCTTTCB
T ss_pred cCCCceECCCCCCEeC-----CceEcCCCCc
Confidence 3456788999998843 5666666763
No 107
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.16 E-value=18 Score=20.91 Aligned_cols=56 Identities=18% Similarity=0.150 Sum_probs=31.3
Q ss_pred CCceeCCCCCCceEeC------CCcCeeeccccceeeeecccccccCCccCCC-CCC----CCCCCCCCCCC
Q psy1749 15 ELIKCCPMCSVPIEKD------EGCAQMLCKRCKHVFCWYCLASLDDDFLLRH-YDK----GPCKNKLGHSR 75 (87)
Q Consensus 15 ~~~k~CP~C~~~Iek~------~GCnhm~C~~C~~~FC~~C~~~~~~~~~~~H-f~~----~~C~~~~~~~~ 75 (87)
.....|+.|+..|... +.--|..|-. |..|...+.....+.| .++ ..|+.+++.+.
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~-----C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~ 79 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCVNGHFFHRSCFR-----CHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGP 79 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCB-----CSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCC
T ss_pred CCCCCCcccCCCcccceEEEECCCeeCCCcCE-----EcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCC
Confidence 3457899999999532 2234444443 4567777766432222 122 44566666654
No 108
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.27 E-value=3.3 Score=23.30 Aligned_cols=15 Identities=27% Similarity=0.488 Sum_probs=12.0
Q ss_pred CCceeCCCCCCceEe
Q psy1749 15 ELIKCCPMCSVPIEK 29 (87)
Q Consensus 15 ~~~k~CP~C~~~Iek 29 (87)
.....|+.|+.+|.-
T Consensus 3 ~~~~~C~~C~~~I~~ 17 (72)
T 1x4l_A 3 SGSSGCAGCTNPISG 17 (72)
T ss_dssp SCSCSBTTTTBCCCC
T ss_pred CCCCCCcCCCccccC
Confidence 345789999999984
No 109
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=46.21 E-value=12 Score=26.04 Aligned_cols=24 Identities=21% Similarity=0.618 Sum_probs=14.7
Q ss_pred ceeCCCCCC----ceEeCCCcCeeeccccce
Q psy1749 17 IKCCPMCSV----PIEKDEGCAQMLCKRCKH 43 (87)
Q Consensus 17 ~k~CP~C~~----~Iek~~GCnhm~C~~C~~ 43 (87)
-.+||.|+. .|. .+| +..|.+||.
T Consensus 14 ~~~CP~Cg~~d~~~~~-~dg--~~~C~~Cg~ 41 (255)
T 1nui_A 14 HIPCDNCGSSDGNSLF-SDG--HTFCYVCEK 41 (255)
T ss_dssp EECCSSSCCSSCEEEE-TTS--CEEETTTCC
T ss_pred CCcCCCCCCCCCceEe-CCC--CeecccCCC
Confidence 457999987 333 344 355555554
No 110
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=46.08 E-value=13 Score=23.51 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=12.8
Q ss_pred CceeCCCCCCceEeCCC
Q psy1749 16 LIKCCPMCSVPIEKDEG 32 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~~G 32 (87)
.+-.||.|+.+++....
T Consensus 7 dILaCP~cK~pL~l~~~ 23 (97)
T 2k5r_A 7 HLLCSPDTRQPLSLLES 23 (97)
T ss_dssp SSCCCCTTSSCCEECCH
T ss_pred hheECCCCCCccccccc
Confidence 34579999998887644
No 111
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=45.90 E-value=11 Score=26.25 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=22.2
Q ss_pred cCCceeCCCCCCceEeCCCcCeeeccccceeeee
Q psy1749 14 SELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCW 47 (87)
Q Consensus 14 ~~~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~ 47 (87)
.-.-+.||+|+.-+.-...=+...|-.|+.-|.|
T Consensus 110 ~~~~~~Cp~Cg~g~fma~h~dR~~CGkC~~t~~~ 143 (189)
T 2xzm_9 110 SLQQKGCPKCGPGIFMAKHYDRHYCGKCHLTLKI 143 (189)
T ss_dssp EECSEECSTTCSSCEEEECSSCEEETTTCCCBCC
T ss_pred EEccccCCccCCCccccCccCCCccCCceeEEEe
Confidence 3345889999966544433334488888887765
No 112
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=45.39 E-value=6.2 Score=29.28 Aligned_cols=27 Identities=11% Similarity=-0.054 Sum_probs=17.3
Q ss_pred ceeCC--CCCCceEeC--CCcCeeeccccce
Q psy1749 17 IKCCP--MCSVPIEKD--EGCAQMLCKRCKH 43 (87)
Q Consensus 17 ~k~CP--~C~~~Iek~--~GCnhm~C~~C~~ 43 (87)
-++|+ .|+++|++. +|-+...|+.|+.
T Consensus 247 g~pC~~~~CG~~I~~~~~~gR~t~~CP~CQ~ 277 (310)
T 3twl_A 247 KKPGKAFVDGKKIDFITAGGRTTAYVPELQK 277 (310)
T ss_dssp SCTTSCEETTEECEECCE------ECTTTCC
T ss_pred CCCCCCCCCCCeEEEEEECCcccEECCCCcC
Confidence 47899 999999986 6777777877765
No 113
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=45.15 E-value=11 Score=25.04 Aligned_cols=27 Identities=22% Similarity=0.588 Sum_probs=21.4
Q ss_pred eeCCCCCCc---eEeCCCcCeeecccccee
Q psy1749 18 KCCPMCSVP---IEKDEGCAQMLCKRCKHV 44 (87)
Q Consensus 18 k~CP~C~~~---Iek~~GCnhm~C~~C~~~ 44 (87)
..||.|+.+ +.+.++--.+.|..||+.
T Consensus 103 VlC~~C~sPdT~l~k~~r~~~l~C~ACGa~ 132 (138)
T 1nee_A 103 VICHECNRPDTRIIREGRISLLKCEACGAK 132 (138)
T ss_dssp HHHTCCSSCSSCCEEETTTTEEECSTTSCC
T ss_pred EECCCCCCcCcEEEEcCCeEEEEccCCCCC
Confidence 469999865 667778888999989874
No 114
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=45.07 E-value=9.4 Score=25.72 Aligned_cols=35 Identities=20% Similarity=0.407 Sum_probs=29.7
Q ss_pred CceeCCCCCCceEeCCCcCeeeccccceeeeecccc
Q psy1749 16 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLA 51 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~ 51 (87)
+-..|..|..++-..++. ...|..|+..+|-.|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~-g~~C~~C~~~VC~~C~~ 101 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNS-RRQCLECSLFVCKSCSH 101 (153)
T ss_dssp GGTBCTTTCCBGGGCSSC-CEECTTTCCEECGGGEE
T ss_pred CCccchhhcCccccccCC-CCcCCCCCchhhccccc
Confidence 468899999998888887 55788899999999984
No 115
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=44.79 E-value=9 Score=22.29 Aligned_cols=33 Identities=24% Similarity=0.537 Sum_probs=25.0
Q ss_pred eeCCCCCCceEeCCCcCeeeccccceeeeeccccc
Q psy1749 18 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLAS 52 (87)
Q Consensus 18 k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~ 52 (87)
..|..|+...... --.-.|+.||..||..|...
T Consensus 12 ~~C~~C~~~F~~~--~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLL--NRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTT--BCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCc--cccccCCCCCEEEcccccCC
Confidence 4799999876533 23457889999999999854
No 116
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=44.33 E-value=11 Score=24.79 Aligned_cols=38 Identities=18% Similarity=0.530 Sum_probs=29.8
Q ss_pred CCceeCCCCCCceEeCCCcCeeeccccceeeeecccccc
Q psy1749 15 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASL 53 (87)
Q Consensus 15 ~~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~ 53 (87)
.+...|..|..+.-..++.. -.|..|+..+|-.|+...
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g-~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSAS-VVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCE-EECTTTCCEEETTSEEEC
T ss_pred CCCccccccCCCcccccCCC-CCCCCCCcccccccCCcc
Confidence 46688999999986666655 577779999999888655
No 117
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=44.30 E-value=7.6 Score=21.90 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=9.3
Q ss_pred CCceeCCCCCCc
Q psy1749 15 ELIKCCPMCSVP 26 (87)
Q Consensus 15 ~~~k~CP~C~~~ 26 (87)
..-+.||+|+..
T Consensus 12 ~~k~iCpkC~a~ 23 (51)
T 3j21_g 12 FKKYVCLRCGAT 23 (51)
T ss_dssp SSEEECTTTCCE
T ss_pred hCCccCCCCCCc
Confidence 456789999887
No 118
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.40 E-value=11 Score=21.30 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=13.5
Q ss_pred cccCCceeCCCCCCceEeC
Q psy1749 12 FDSELIKCCPMCSVPIEKD 30 (87)
Q Consensus 12 ~~~~~~k~CP~C~~~Iek~ 30 (87)
+.....+.||+|+.-....
T Consensus 7 ~~~~~~~~CPrCn~~f~~~ 25 (49)
T 2e72_A 7 GQDGGRKICPRCNAQFRVT 25 (49)
T ss_dssp SCCSSCCCCTTTCCCCSSH
T ss_pred cccCCceeCCcccccccch
Confidence 4444678999999877643
No 119
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=43.01 E-value=9.9 Score=23.97 Aligned_cols=26 Identities=23% Similarity=0.636 Sum_probs=13.5
Q ss_pred eeCCCCCCceEeCCCcCeeeccccce
Q psy1749 18 KCCPMCSVPIEKDEGCAQMLCKRCKH 43 (87)
Q Consensus 18 k~CP~C~~~Iek~~GCnhm~C~~C~~ 43 (87)
..|.+|+..=-....|....|.+|+.
T Consensus 5 ~~C~~C~~~GH~~~~Cp~~~C~~Cg~ 30 (124)
T 2lli_A 5 PKCNNCSQRGHLKKDCPHIICSYCGA 30 (124)
T ss_dssp SCCSSCSSSSCCTTTTTSCCCTTTCC
T ss_pred CcccCCCCCCcCcccCcCCcCcCCCC
Confidence 34555555544445555555555544
No 120
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=42.63 E-value=6.2 Score=25.38 Aligned_cols=37 Identities=24% Similarity=0.620 Sum_probs=0.0
Q ss_pred eeCCCCCCceEe-------------CCCcCeeeccccceeeeecccccccC
Q psy1749 18 KCCPMCSVPIEK-------------DEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 18 k~CP~C~~~Iek-------------~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
-.|+=|...++. .+.|.-+.-. |++.|+..|...|-.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~ 98 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLK 98 (117)
T ss_dssp ---------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHH
Confidence 468888877764 2334444444 999999999998875
No 121
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.62 E-value=14 Score=21.51 Aligned_cols=29 Identities=28% Similarity=0.706 Sum_probs=21.0
Q ss_pred CCceeCCC--CCCceEeCCCcCeeeccccceeeeec
Q psy1749 15 ELIKCCPM--CSVPIEKDEGCAQMLCKRCKHVFCWY 48 (87)
Q Consensus 15 ~~~k~CP~--C~~~Iek~~GCnhm~C~~C~~~FC~~ 48 (87)
...++|.. |+.. +. .-+.|..|+..||..
T Consensus 10 ~~~~~Cs~~~Ck~~-~l----l~f~C~~C~~~FC~~ 40 (63)
T 1x4v_A 10 IFTNKCERAGCRQR-EM----MKLTCERCSRNFCIK 40 (63)
T ss_dssp TTCCCCCSTTCCCC-CS----SCCBCSSSCCBCCHH
T ss_pred ccCCCCCccCCCCC-Cc----cceECCCCCcccCcc
Confidence 34578887 9877 22 356888899999963
No 122
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=39.70 E-value=8.2 Score=23.47 Aligned_cols=9 Identities=22% Similarity=1.099 Sum_probs=6.7
Q ss_pred eeeeecccc
Q psy1749 43 HVFCWYCLA 51 (87)
Q Consensus 43 ~~FC~~C~~ 51 (87)
..+||.|++
T Consensus 46 ~~~CYnCG~ 54 (83)
T 3nyb_B 46 TIYCYNCGG 54 (83)
T ss_dssp CCBCSSSSC
T ss_pred CCeecccCC
Confidence 368888884
No 123
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=38.85 E-value=6.7 Score=28.74 Aligned_cols=32 Identities=22% Similarity=0.549 Sum_probs=24.7
Q ss_pred cCCceeCCCCCCceEeCC-CcCeeeccccceee
Q psy1749 14 SELIKCCPMCSVPIEKDE-GCAQMLCKRCKHVF 45 (87)
Q Consensus 14 ~~~~k~CP~C~~~Iek~~-GCnhm~C~~C~~~F 45 (87)
...|.+||+|+.+|...+ .=+.-.|+.|++++
T Consensus 27 ~~l~~kc~~~~~~~y~~~l~~~~~v~p~~~~~~ 59 (285)
T 2f9i_B 27 AGIMTKCPKCKKIMYTKELAENLNVCFNCDHHI 59 (285)
T ss_dssp CSSEEECTTTCCEEEHHHHHHTTTBCTTTCCBC
T ss_pred hHHHHhhHhhCCccchhhhHHhcCcCCCCCCCC
Confidence 356899999999999864 45667787787765
No 124
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=38.28 E-value=13 Score=25.04 Aligned_cols=28 Identities=29% Similarity=0.672 Sum_probs=20.8
Q ss_pred eeCCCCCCc---eEeCCCcCeeeccccceee
Q psy1749 18 KCCPMCSVP---IEKDEGCAQMLCKRCKHVF 45 (87)
Q Consensus 18 k~CP~C~~~---Iek~~GCnhm~C~~C~~~F 45 (87)
..||.|+.+ +.+.++--.+.|..||+..
T Consensus 105 VlC~~C~sPdT~L~k~~r~~~l~C~ACGa~~ 135 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFHFLKCEACGAET 135 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSBCCCCSSSCCCC
T ss_pred EECCCCCCcCcEEEEeCCEEEEEecCCCCCc
Confidence 469999865 5666777778888887653
No 125
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.92 E-value=18 Score=20.34 Aligned_cols=13 Identities=38% Similarity=0.718 Sum_probs=10.9
Q ss_pred ceeCCCCCCceEe
Q psy1749 17 IKCCPMCSVPIEK 29 (87)
Q Consensus 17 ~k~CP~C~~~Iek 29 (87)
...|+.|+.+|.-
T Consensus 5 ~~~C~~C~~~I~~ 17 (76)
T 1x68_A 5 SSGCVACSKPISG 17 (76)
T ss_dssp CCCCTTTCCCCCT
T ss_pred CCCCccCCCcccC
Confidence 4689999999984
No 126
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=36.48 E-value=10 Score=24.06 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=14.7
Q ss_pred ccCCceeCCCCCCceEeCCCcC
Q psy1749 13 DSELIKCCPMCSVPIEKDEGCA 34 (87)
Q Consensus 13 ~~~~~k~CP~C~~~Iek~~GCn 34 (87)
.++..+.||.|++...+..|+.
T Consensus 54 rkeG~q~CpqCktrYkr~kgsp 75 (93)
T 1weo_A 54 RREGTQNCPQCKTRYKRLRGSP 75 (93)
T ss_dssp HHTSCSSCTTTCCCCCCCTTCC
T ss_pred HhccCccccccCCccccccCCC
Confidence 3456677888888777655554
No 127
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=35.06 E-value=30 Score=21.13 Aligned_cols=46 Identities=20% Similarity=0.376 Sum_probs=24.7
Q ss_pred ceeCCCCCCceEeCCCcCe-eeccccceeeeecccccccCCccCCCC
Q psy1749 17 IKCCPMCSVPIEKDEGCAQ-MLCKRCKHVFCWYCLASLDDDFLLRHY 62 (87)
Q Consensus 17 ~k~CP~C~~~Iek~~GCnh-m~C~~C~~~FC~~C~~~~~~~~~~~Hf 62 (87)
+=.|-.|+-.|.|.--=.| ..|+.|...-|-.|++.+.....-.|.
T Consensus 10 ~F~C~~Cgd~lKK~kv~~H~~~Cr~~~~~SCIDC~~~F~~~~y~~Ht 56 (79)
T 1wjv_A 10 FFTCNACGESVKKIQVEKHVSNCRNCECLSCIDCGKDFWGDDYKSHV 56 (79)
T ss_dssp EEEESSSCCEEETTHHHHHHHHCTTCCEEEETTTTEEEEGGGTTTCC
T ss_pred EEEcCCCCCeeecccchhHHhhCCCCCcEEecccCCeeCCCCEeCEe
Confidence 4468889988888532222 224434444455555555543333454
No 128
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=35.00 E-value=10 Score=23.70 Aligned_cols=37 Identities=24% Similarity=0.580 Sum_probs=25.7
Q ss_pred eeCCCCCCceEeC-------------CCcCeeeccccceeeeecccccccC
Q psy1749 18 KCCPMCSVPIEKD-------------EGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 18 k~CP~C~~~Iek~-------------~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
-.|+=|...++.. ++|.-+.-. |++.|+..|...|-.
T Consensus 38 d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~ 87 (106)
T 3dpl_R 38 DNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLK 87 (106)
T ss_dssp CCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHT
T ss_pred CCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHH
Confidence 4588887776632 334444444 999999999999865
No 129
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=34.17 E-value=12 Score=24.89 Aligned_cols=27 Identities=19% Similarity=0.506 Sum_probs=17.7
Q ss_pred eeCCCCCCc---eEeCCCcCeeecccccee
Q psy1749 18 KCCPMCSVP---IEKDEGCAQMLCKRCKHV 44 (87)
Q Consensus 18 k~CP~C~~~---Iek~~GCnhm~C~~C~~~ 44 (87)
..||.|+.+ +.+.++--.+.|..||+.
T Consensus 104 VlC~~C~sPdT~l~k~~r~~~l~C~ACGa~ 133 (139)
T 3cw2_K 104 VECSTCKSLDTILKKEKKSWYIVCLACGAQ 133 (139)
T ss_dssp SSCCSSSSSCCCSCSSCSTTTSSCCC----
T ss_pred eECCCCCCcCcEEEEeCCeEEEEecCCCCC
Confidence 569999876 555667777889888864
No 130
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.92 E-value=23 Score=21.51 Aligned_cols=32 Identities=19% Similarity=0.612 Sum_probs=24.4
Q ss_pred cCCceeCCCCCCceEeCC-------CcCeeeccccceee
Q psy1749 14 SELIKCCPMCSVPIEKDE-------GCAQMLCKRCKHVF 45 (87)
Q Consensus 14 ~~~~k~CP~C~~~Iek~~-------GCnhm~C~~C~~~F 45 (87)
....+.|-.|+.++-... +|+|-.|..|+.+.
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~ 60 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQE 60 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEEC
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhcccccccC
Confidence 456788999999887753 58888888777654
No 131
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=33.73 E-value=26 Score=24.86 Aligned_cols=27 Identities=26% Similarity=0.626 Sum_probs=16.9
Q ss_pred ceeCCCCCC---ceEeCCCcCeeeccccce
Q psy1749 17 IKCCPMCSV---PIEKDEGCAQMLCKRCKH 43 (87)
Q Consensus 17 ~k~CP~C~~---~Iek~~GCnhm~C~~C~~ 43 (87)
...||.|+. .|..+..-.-+.|..||.
T Consensus 21 ~~~CPECGs~~t~IV~D~erGE~VCsdCGL 50 (197)
T 3k1f_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGL 50 (197)
T ss_dssp CCCCTTTCCSSCCEEEEGGGTEEEETTTCB
T ss_pred CeECcCCCCcCCeEEEeCCCCEEEEcCCCC
Confidence 347999997 255444445566665554
No 132
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=33.67 E-value=7.3 Score=23.10 Aligned_cols=37 Identities=19% Similarity=0.477 Sum_probs=22.4
Q ss_pred CceeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 16 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
....||-|...+... .-+.-..||+.||..|...+-.
T Consensus 4 ~~~~C~IC~~~~~~~---~~~~l~~CgH~FC~~Cl~~~~~ 40 (94)
T 1wim_A 4 GSSGCKLCLGEYPVE---QMTTIAQCQCIFCTLCLKQYVE 40 (94)
T ss_dssp SBCCCSSSCCCCBGG---GEEEETTTTEEEEHHHHHHHHH
T ss_pred CCcCCcccCcccccc---cceEcCCCCCcccHHHHHHHHH
Confidence 345688887665422 1122224888999988866543
No 133
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.33 E-value=24 Score=19.96 Aligned_cols=35 Identities=29% Similarity=0.517 Sum_probs=21.2
Q ss_pred CceeCCCCCCceEeC-------CCcCeeeccccceeeeecccccccC
Q psy1749 16 LIKCCPMCSVPIEKD-------EGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~-------~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
...+|..|+.+|.-. +.-=|..|- -|..|..++..
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF-----~C~~C~~~L~~ 55 (82)
T 2ehe_A 14 FANTCAECQQLIGHDSRELFYEDRHFHEGCF-----RCCRCQRSLAD 55 (82)
T ss_dssp CSCBCTTTCCBCCSSCCBCCCSSCCCBTTTS-----BCTTTCCBCSS
T ss_pred cCCcCccCCCccccCcEEEEeCCccccccCC-----eecCCCCccCC
Confidence 346899999999821 223344443 24567777765
No 134
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=33.10 E-value=25 Score=18.73 Aligned_cols=30 Identities=27% Similarity=0.589 Sum_probs=20.1
Q ss_pred ceeCCCCCCceEeCCCcCeeeccccceeeeeccccc
Q psy1749 17 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLAS 52 (87)
Q Consensus 17 ~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~ 52 (87)
...||-|...+... ++ ..||+.||..|...
T Consensus 6 ~~~C~IC~~~~~~p-----~~-l~CgH~fC~~Ci~~ 35 (56)
T 1bor_A 6 FLRCQQCQAEAKCP-----KL-LPCLHTLCSGCLEA 35 (56)
T ss_dssp CSSCSSSCSSCBCC-----SC-STTSCCSBTTTCSS
T ss_pred CCCceEeCCccCCe-----EE-cCCCCcccHHHHcc
Confidence 35689898776532 22 24888888888766
No 135
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=32.73 E-value=34 Score=20.93 Aligned_cols=30 Identities=20% Similarity=0.573 Sum_probs=22.1
Q ss_pred cCCceeCCC--CCCceEeCCCcCeeeccccceeeeec
Q psy1749 14 SELIKCCPM--CSVPIEKDEGCAQMLCKRCKHVFCWY 48 (87)
Q Consensus 14 ~~~~k~CP~--C~~~Iek~~GCnhm~C~~C~~~FC~~ 48 (87)
.....+|.. |+.... .-+.|..|+..||..
T Consensus 22 ~~~~~~C~~~~Ck~~~~-----l~f~C~~C~~~FC~~ 53 (86)
T 1wfe_A 22 EHKSYSCSFKGCTDVEL-----VAVICPYCEKNFCLR 53 (86)
T ss_dssp CSCCEECCSTTCCCEES-----SCEECTTTCCEECGG
T ss_pred CCCCCCCCCcCCCCCCc-----cceECCCCCcccccc
Confidence 345567887 988722 567898899999964
No 136
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=32.60 E-value=21 Score=23.35 Aligned_cols=13 Identities=23% Similarity=0.608 Sum_probs=9.2
Q ss_pred eeCCCCCCceEeC
Q psy1749 18 KCCPMCSVPIEKD 30 (87)
Q Consensus 18 k~CP~C~~~Iek~ 30 (87)
..||.|+..+.+.
T Consensus 149 ~~Cp~CG~~~~~~ 161 (165)
T 2lcq_A 149 GVCPDCGSKVKLI 161 (165)
T ss_dssp GBCTTTCCBEEEC
T ss_pred CcCCCCCCcceeC
Confidence 3688888777664
No 137
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=32.23 E-value=12 Score=28.93 Aligned_cols=32 Identities=25% Similarity=0.697 Sum_probs=22.7
Q ss_pred eeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 18 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 18 k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
..||-|...... ..-..||+.||+.|...|-.
T Consensus 333 ~~C~ICle~~~~------pv~lpCGH~FC~~Ci~~wl~ 364 (389)
T 2y1n_A 333 QLCKICAENDKD------VKIEPCGHLMCTSCLTSWQE 364 (389)
T ss_dssp SBCTTTSSSBCC------EEEETTCCEECHHHHHHHHH
T ss_pred CCCCccCcCCCC------eEEeCCCChhhHHHHHHHHh
Confidence 679999776632 23335999999999887754
No 138
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=31.48 E-value=16 Score=23.02 Aligned_cols=26 Identities=19% Similarity=0.522 Sum_probs=15.1
Q ss_pred ceeCCCCCCceEeCCCcCee-ecccccee
Q psy1749 17 IKCCPMCSVPIEKDEGCAQM-LCKRCKHV 44 (87)
Q Consensus 17 ~k~CP~C~~~Iek~~GCnhm-~C~~C~~~ 44 (87)
.-+|..|+..++... ... .|+.||..
T Consensus 73 ~~~C~~CG~~~e~~~--~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 73 ELECKDCSHVFKPNA--LDYGVCEKCHSK 99 (119)
T ss_dssp EEECSSSSCEECSCC--STTCCCSSSSSC
T ss_pred eEEcCCCCCEEeCCC--CCCCcCccccCC
Confidence 456777777766543 234 56666544
No 139
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=31.38 E-value=25 Score=26.12 Aligned_cols=27 Identities=26% Similarity=0.626 Sum_probs=16.5
Q ss_pred ceeCCCCCC---ceEeCCCcCeeeccccce
Q psy1749 17 IKCCPMCSV---PIEKDEGCAQMLCKRCKH 43 (87)
Q Consensus 17 ~k~CP~C~~---~Iek~~GCnhm~C~~C~~ 43 (87)
...||.|+. .|..+..=.-+.|..||.
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGl 50 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGL 50 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTEEEETTTCB
T ss_pred CCcCCCCCCCCCceeEECCCCcEEeCCCCC
Confidence 447999995 344444555667776554
No 140
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=30.19 E-value=38 Score=23.13 Aligned_cols=26 Identities=19% Similarity=0.517 Sum_probs=16.3
Q ss_pred ceeCCCCCCceEeCCCcCeeeccccce
Q psy1749 17 IKCCPMCSVPIEKDEGCAQMLCKRCKH 43 (87)
Q Consensus 17 ~k~CP~C~~~Iek~~GCnhm~C~~C~~ 43 (87)
-..||+|...|...++ +...|..|+.
T Consensus 42 Y~ACp~CnKKV~~~~~-g~~~CekC~~ 67 (172)
T 3u50_C 42 YYRCTCQGKSVLKYHG-DSFFCESCQQ 67 (172)
T ss_dssp EEECTTSCCCEEEETT-TEEEETTTTE
T ss_pred ehhchhhCCEeeeCCC-CeEECCCCCC
Confidence 4679999999984322 2344555544
No 141
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.70 E-value=31 Score=21.90 Aligned_cols=31 Identities=26% Similarity=0.476 Sum_probs=24.4
Q ss_pred CceeCC--CCCCceEeCCCcCeeecc-ccceeee
Q psy1749 16 LIKCCP--MCSVPIEKDEGCAQMLCK-RCKHVFC 46 (87)
Q Consensus 16 ~~k~CP--~C~~~Iek~~GCnhm~C~-~C~~~FC 46 (87)
.-..|. +|...+|-...|.-|+|+ .|++.|-
T Consensus 16 HC~~C~~~~C~~~~~~~~~C~~i~CP~~Cga~i~ 49 (100)
T 2yre_A 16 HCVNCVSRRCMTRPEPGISCDLIGCPLVCGAVFH 49 (100)
T ss_dssp TGGGCCCTTCCCCCCTTTCCCEEECTTCCSCEEE
T ss_pred hHhhhcccccCCCCCCCCeeeeeeCCcccCCeee
Confidence 334455 699999999999999999 7988554
No 142
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.54 E-value=42 Score=22.80 Aligned_cols=28 Identities=25% Similarity=0.497 Sum_probs=21.0
Q ss_pred eeCCCCCCc---eEe--CCCcCeeeccccceee
Q psy1749 18 KCCPMCSVP---IEK--DEGCAQMLCKRCKHVF 45 (87)
Q Consensus 18 k~CP~C~~~---Iek--~~GCnhm~C~~C~~~F 45 (87)
..||.|+.+ +.+ ..+--.+.|..||+.-
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~ 136 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGYRG 136 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCCEE
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCCCC
Confidence 469999875 554 5667779999898764
No 143
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=27.42 E-value=36 Score=22.19 Aligned_cols=29 Identities=21% Similarity=0.441 Sum_probs=14.9
Q ss_pred CceeCCCCCCceEeCCCcCeeecccccee
Q psy1749 16 LIKCCPMCSVPIEKDEGCAQMLCKRCKHV 44 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~~GCnhm~C~~C~~~ 44 (87)
.--.||.|+..--+-.+-.-=.|..|+..
T Consensus 59 akytCPfCGk~~vKR~avGIW~C~~Cgk~ 87 (116)
T 3cc2_Z 59 EDHACPNCGEDRVDRQGTGIWQCSYCDYK 87 (116)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCCE
T ss_pred cCCcCCCCCCceeEecCceeEECCCCCCE
Confidence 34579999884333333233334444443
No 144
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=27.26 E-value=36 Score=23.41 Aligned_cols=28 Identities=25% Similarity=0.497 Sum_probs=20.8
Q ss_pred eeCCCCCCc---eEe--CCCcCeeeccccceee
Q psy1749 18 KCCPMCSVP---IEK--DEGCAQMLCKRCKHVF 45 (87)
Q Consensus 18 k~CP~C~~~---Iek--~~GCnhm~C~~C~~~F 45 (87)
..||.|+.+ +.+ .++--.+.|..||+.-
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~ 129 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTIGNSCKACGYRG 129 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEEEEEETTTCCCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccccCCcc
Confidence 469999876 556 5677778898888753
No 145
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.81 E-value=8.6 Score=22.82 Aligned_cols=13 Identities=23% Similarity=0.963 Sum_probs=8.4
Q ss_pred eeCCCCCCceEeC
Q psy1749 18 KCCPMCSVPIEKD 30 (87)
Q Consensus 18 k~CP~C~~~Iek~ 30 (87)
..||-|+..+...
T Consensus 59 ~~CplCr~~~~~~ 71 (80)
T 2d8s_A 59 RCCELCKYEFIME 71 (80)
T ss_dssp SBCSSSCCBCCCC
T ss_pred CCCCCCCCeeecC
Confidence 5677777766543
No 146
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=26.71 E-value=57 Score=22.17 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=16.6
Q ss_pred CceeCCCCCCceEe---------CCC-cCeeeccccceee
Q psy1749 16 LIKCCPMCSVPIEK---------DEG-CAQMLCKRCKHVF 45 (87)
Q Consensus 16 ~~k~CP~C~~~Iek---------~~G-Cnhm~C~~C~~~F 45 (87)
....||+|+..--. +++ =.+.+|..||+.|
T Consensus 136 ~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w 175 (178)
T 3po3_S 136 DRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRW 175 (178)
T ss_dssp SSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEE
T ss_pred CCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCee
Confidence 34579999853221 111 3455677777665
No 147
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=26.70 E-value=62 Score=19.30 Aligned_cols=28 Identities=21% Similarity=0.790 Sum_probs=20.8
Q ss_pred CCceeCCC--CCCceEeCCCcCeeeccccceeeee
Q psy1749 15 ELIKCCPM--CSVPIEKDEGCAQMLCKRCKHVFCW 47 (87)
Q Consensus 15 ~~~k~CP~--C~~~Iek~~GCnhm~C~~C~~~FC~ 47 (87)
...++|-. |+.. +=.-+.|..|+..||-
T Consensus 12 ~~g~~Cs~~~C~~~-----dflpf~C~~C~~~FC~ 41 (75)
T 1wys_A 12 DIGQHCQVQHCRQR-----DFLPFVCDGCSGIFCL 41 (75)
T ss_dssp CCCCCCSCTTTCCC-----SCCCEECTTTCCEECS
T ss_pred ccCCCcCcccCCCc-----cceeeECcccCcCcCc
Confidence 34577876 8877 2346788889999996
No 148
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=25.54 E-value=56 Score=21.13 Aligned_cols=26 Identities=27% Similarity=0.778 Sum_probs=18.6
Q ss_pred ceeCCCCCCceEeC--CC--cCeeeccccc
Q psy1749 17 IKCCPMCSVPIEKD--EG--CAQMLCKRCK 42 (87)
Q Consensus 17 ~k~CP~C~~~Iek~--~G--Cnhm~C~~C~ 42 (87)
.+.||+|+...+.. +| =....|..|+
T Consensus 3 ~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~ 32 (189)
T 3cng_A 3 MKFCSQCGGEVILRIPEGDTLPRYICPKCH 32 (189)
T ss_dssp CCBCTTTCCBCEEECCTTCSSCEEEETTTT
T ss_pred cccCchhCCccccccccCCCCcceECCCCC
Confidence 47899999998753 33 3456787787
No 149
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=24.30 E-value=40 Score=24.96 Aligned_cols=37 Identities=27% Similarity=0.652 Sum_probs=27.2
Q ss_pred CceeCCCCCCce----Ee----CCCcCeeeccccceee------eeccccc
Q psy1749 16 LIKCCPMCSVPI----EK----DEGCAQMLCKRCKHVF------CWYCLAS 52 (87)
Q Consensus 16 ~~k~CP~C~~~I----ek----~~GCnhm~C~~C~~~F------C~~C~~~ 52 (87)
.-..||-|+..= -+ .+|=-++.|.-|+++| |-.|+..
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 456799999742 22 4677799998899998 5568876
No 150
>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae}
Probab=23.82 E-value=46 Score=20.07 Aligned_cols=15 Identities=13% Similarity=0.266 Sum_probs=11.2
Q ss_pred CceeCCCCCCceEeC
Q psy1749 16 LIKCCPMCSVPIEKD 30 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~ 30 (87)
..++||.|+......
T Consensus 55 ~~~RC~eCG~~fkL~ 69 (80)
T 2odx_A 55 EVARCWECGSVYKLN 69 (80)
T ss_dssp CEEECSSSCCEEEEC
T ss_pred CCeECCCCCeEEEEE
Confidence 467899888877654
No 151
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=23.49 E-value=68 Score=21.43 Aligned_cols=27 Identities=19% Similarity=0.685 Sum_probs=16.6
Q ss_pred ceeCCC--CCCceEeCCCcCeeecccccee
Q psy1749 17 IKCCPM--CSVPIEKDEGCAQMLCKRCKHV 44 (87)
Q Consensus 17 ~k~CP~--C~~~Iek~~GCnhm~C~~C~~~ 44 (87)
-..||. |+..|...+. ....|..|+..
T Consensus 43 Y~aC~~~~CnKKv~~~~~-g~~~CekC~~~ 71 (181)
T 1l1o_C 43 YQACPTQDCNKKVIDQQN-GLYRCEKCDTE 71 (181)
T ss_dssp EEBCCSTTCCCBCEEETT-TEEEETTTTEE
T ss_pred ECCCCchhcCCccccCCC-CeEECCCCCCc
Confidence 467999 9998875431 23455556543
No 152
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=23.47 E-value=42 Score=21.28 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=15.3
Q ss_pred ceeCCCCCCceEeCCCcCeeeccccce
Q psy1749 17 IKCCPMCSVPIEKDEGCAQMLCKRCKH 43 (87)
Q Consensus 17 ~k~CP~C~~~Iek~~GCnhm~C~~C~~ 43 (87)
-..||.|+...... +..+|..||+
T Consensus 16 H~lCrRCG~~sfH~---qK~~CgkCGY 39 (97)
T 2zkr_2 16 HTLCRRCGSKAYHL---QKSTCGKCGY 39 (97)
T ss_dssp EECCTTTCSSCEET---TSCCBTTTCT
T ss_pred CCcCCCCCCccCcC---ccccCcccCC
Confidence 34789998877743 3456665553
No 153
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.36 E-value=27 Score=20.71 Aligned_cols=33 Identities=15% Similarity=0.338 Sum_probs=24.2
Q ss_pred eeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 18 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 18 k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
-.||-|..+++ +.++-..||+.||-.|...|-.
T Consensus 8 ~~CPI~~~~~~-----dPV~~~~cGh~f~r~cI~~~l~ 40 (94)
T 2yu4_A 8 FTCPITKEEMK-----KPVKNKVCGHTYEEDAIVRMIE 40 (94)
T ss_dssp CBCTTTCSBCS-----SEEEESSSCCEEEHHHHHHHHH
T ss_pred eECcCcCchhc-----CCEEcCCCCCeecHHHHHHHHH
Confidence 45999887765 4555534999999998877754
No 154
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.26 E-value=31 Score=19.42 Aligned_cols=41 Identities=24% Similarity=0.439 Sum_probs=20.3
Q ss_pred cCCceeCCCCCCceEeC--CCcCee-ecccc--ceeeeeccccccc
Q psy1749 14 SELIKCCPMCSVPIEKD--EGCAQM-LCKRC--KHVFCWYCLASLD 54 (87)
Q Consensus 14 ~~~~k~CP~C~~~Iek~--~GCnhm-~C~~C--~~~FC~~C~~~~~ 54 (87)
......|+-|....... .-|.|+ .|..| ....|-+|.+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~ 57 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQ 57 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchh
Confidence 44567788887643221 235555 44444 2233444444433
No 155
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.52 E-value=26 Score=20.64 Aligned_cols=37 Identities=19% Similarity=0.489 Sum_probs=28.5
Q ss_pred cCCceeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 14 SELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 14 ~~~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
......|.-|+..|... +.|..|++.|=..|...|-.
T Consensus 12 ~~~i~~C~IC~~~i~~g-----~~C~~C~h~fH~~Ci~kWl~ 48 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQG-----QSCETCGIRMHLPCVAKYFQ 48 (74)
T ss_dssp SSSSCBCSSSCCBCSSS-----EECSSSCCEECHHHHHHHST
T ss_pred cCCCCcCcchhhHcccC-----CccCCCCchhhHHHHHHHHH
Confidence 34668899999999743 56667999988888887765
No 156
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=22.45 E-value=28 Score=19.17 Aligned_cols=12 Identities=33% Similarity=0.952 Sum_probs=10.3
Q ss_pred eeCCCCCCceEe
Q psy1749 18 KCCPMCSVPIEK 29 (87)
Q Consensus 18 k~CP~C~~~Iek 29 (87)
+.||-|+..|+.
T Consensus 45 ~~CPiCR~~i~~ 56 (63)
T 2vje_B 45 ASCPICKKEIQL 56 (63)
T ss_dssp CBCTTTCCBCCE
T ss_pred CcCCCcCchhhc
Confidence 689999999874
No 157
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.42 E-value=49 Score=20.29 Aligned_cols=28 Identities=21% Similarity=0.557 Sum_probs=15.1
Q ss_pred ceeCCCCCCceEeCCCcCeeecccccee
Q psy1749 17 IKCCPMCSVPIEKDEGCAQMLCKRCKHV 44 (87)
Q Consensus 17 ~k~CP~C~~~Iek~~GCnhm~C~~C~~~ 44 (87)
--.||.|+..--+..+-.==.|..|+.-
T Consensus 35 ky~CpfCGk~~vkR~a~GIW~C~kCg~~ 62 (83)
T 3j21_i 35 KHTCPVCGRKAVKRISTGIWQCQKCGAT 62 (83)
T ss_dssp CBCCSSSCSSCEEEEETTEEEETTTCCE
T ss_pred ccCCCCCCCceeEecCcCeEEcCCCCCE
Confidence 4569999877544433222344444443
No 158
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.35 E-value=94 Score=18.10 Aligned_cols=33 Identities=12% Similarity=0.072 Sum_probs=20.2
Q ss_pred eeCCCCCCceEeC-CCcCeeeccccceeeeeccc
Q psy1749 18 KCCPMCSVPIEKD-EGCAQMLCKRCKHVFCWYCL 50 (87)
Q Consensus 18 k~CP~C~~~Iek~-~GCnhm~C~~C~~~FC~~C~ 50 (87)
.+||.|...-.-- -.-.-+.|..|+...|-=-|
T Consensus 16 VkCp~C~~~q~VFSha~t~V~C~~Cgt~L~~PTG 49 (63)
T 3j20_W 16 VKCIDCGNEQIVFSHPATKVRCLICGATLVEPTG 49 (63)
T ss_dssp EECSSSCCEEEEESSCSSCEECSSSCCEEEECCS
T ss_pred EECCCCCCeeEEEecCCeEEEccCcCCEEecCCC
Confidence 5688887644332 23344777778877775444
No 159
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=21.50 E-value=51 Score=19.65 Aligned_cols=30 Identities=23% Similarity=0.532 Sum_probs=15.2
Q ss_pred CCceeCCCCCCceEeCCCcCeeecccccee
Q psy1749 15 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHV 44 (87)
Q Consensus 15 ~~~k~CP~C~~~Iek~~GCnhm~C~~C~~~ 44 (87)
...-.||.|+..--+-.+-.--.|..|+.-
T Consensus 25 ~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~ 54 (73)
T 1ffk_W 25 KKKYKCPVCGFPKLKRASTSIWVCGHCGYK 54 (73)
T ss_pred ccCccCCCCCCceeEEEEeEEEECCCCCcE
Confidence 344579999884433333222334444443
No 160
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=21.30 E-value=33 Score=19.82 Aligned_cols=13 Identities=31% Similarity=1.071 Sum_probs=9.2
Q ss_pred ceeCCCCCCceEe
Q psy1749 17 IKCCPMCSVPIEK 29 (87)
Q Consensus 17 ~k~CP~C~~~Iek 29 (87)
++.||-|+..|..
T Consensus 49 ~~~CP~Cr~~i~~ 61 (79)
T 2yho_A 49 LQSCPVCRSRVEH 61 (79)
T ss_dssp CSBCTTTCCBCCE
T ss_pred cCcCCCCCchhhC
Confidence 3578888877765
No 161
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=21.28 E-value=32 Score=16.68 Aligned_cols=11 Identities=18% Similarity=0.477 Sum_probs=8.1
Q ss_pred eeCCCCCCceE
Q psy1749 18 KCCPMCSVPIE 28 (87)
Q Consensus 18 k~CP~C~~~Ie 28 (87)
..||.|+..|-
T Consensus 4 ~~C~~C~k~Vy 14 (31)
T 1zfo_A 4 PNCARCGKIVY 14 (31)
T ss_dssp CBCSSSCSBCC
T ss_pred CcCCccCCEEe
Confidence 46888888773
No 162
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=21.27 E-value=54 Score=18.26 Aligned_cols=12 Identities=33% Similarity=0.622 Sum_probs=5.7
Q ss_pred CceeCCCCCCce
Q psy1749 16 LIKCCPMCSVPI 27 (87)
Q Consensus 16 ~~k~CP~C~~~I 27 (87)
-..+||-|+..|
T Consensus 22 P~IrCpyCGyri 33 (48)
T 4ayb_P 22 PGVRCPYCGYKI 33 (48)
T ss_dssp SSSCCTTTCCSC
T ss_pred CCcccCccCcEE
Confidence 334455555443
No 163
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=21.26 E-value=1.1e+02 Score=18.07 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=19.8
Q ss_pred eeCCCCCCceEeC-CCcCeeeccccceeeeeccc
Q psy1749 18 KCCPMCSVPIEKD-EGCAQMLCKRCKHVFCWYCL 50 (87)
Q Consensus 18 k~CP~C~~~Iek~-~GCnhm~C~~C~~~FC~~C~ 50 (87)
.+||.|...-..- -.=.-+.|..|+...|-=-|
T Consensus 8 VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~PTG 41 (66)
T 1qxf_A 8 VKCPDCEHEQVIFDHPSTIVKCIICGRTVAEPTG 41 (66)
T ss_dssp EECTTTCCEEEEESSCSSCEECSSSCCEEEECCS
T ss_pred EECCCCCCceEEEecCceEEEcccCCCEEeecCC
Confidence 5688887643332 23344677777777775444
No 164
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=21.01 E-value=12 Score=20.94 Aligned_cols=11 Identities=27% Similarity=0.851 Sum_probs=7.5
Q ss_pred eeCCCCCCceE
Q psy1749 18 KCCPMCSVPIE 28 (87)
Q Consensus 18 k~CP~C~~~Ie 28 (87)
..||-|+..+.
T Consensus 48 ~~C~~C~~~~~ 58 (60)
T 1vyx_A 48 TACQICGVVYN 58 (60)
T ss_dssp SBCTTTCCBCC
T ss_pred CccCCCCCeee
Confidence 57888776653
No 165
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=20.75 E-value=47 Score=19.86 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=14.2
Q ss_pred CceeCCCCCCceEeCCCcCeeeccccc
Q psy1749 16 LIKCCPMCSVPIEKDEGCAQMLCKRCK 42 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~~GCnhm~C~~C~ 42 (87)
.--.||.|+..--|..+-.==.|..|+
T Consensus 25 ~ky~C~fCgk~~vkR~a~GIW~C~~C~ 51 (72)
T 3jyw_9 25 ARYDCSFCGKKTVKRGAAGIWTCSCCK 51 (72)
T ss_dssp SCBCCSSCCSSCBSBCSSSCBCCSSSC
T ss_pred cCccCCCCCCceeEecCCCeEECCCCC
Confidence 345699998775544332222344343
No 166
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=20.68 E-value=33 Score=27.68 Aligned_cols=22 Identities=36% Similarity=0.803 Sum_probs=18.0
Q ss_pred eeCCCCCCceEeCCCcCeeecc
Q psy1749 18 KCCPMCSVPIEKDEGCAQMLCK 39 (87)
Q Consensus 18 k~CP~C~~~Iek~~GCnhm~C~ 39 (87)
..||.|++.+++.+|=....|.
T Consensus 406 ~~CP~Cgs~~~~~~~~~~~rC~ 427 (586)
T 4glx_A 406 THCPVCGSDVERVEGEAVARCT 427 (586)
T ss_dssp SBCTTTCCBEECCTTCSCCEES
T ss_pred CcCCCCCCchhhhhcccccEeC
Confidence 4699999999998876666665
No 167
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=20.66 E-value=40 Score=19.77 Aligned_cols=38 Identities=24% Similarity=0.647 Sum_probs=28.6
Q ss_pred CceeCCCCCCceEeCCCcCeeeccccceeeeecccccccC
Q psy1749 16 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDD 55 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~~~~ 55 (87)
..-.|+-|... .-.+|+.|. |..|...||-.||..+..
T Consensus 8 d~~~C~iC~KT-KFADG~Gh~-C~yCk~r~CaRCGg~v~l 45 (62)
T 2a20_A 8 DAPTCGICHKT-KFADGCGHN-CSYCQTKFCARCGGRVSL 45 (62)
T ss_dssp CCCCCSSSSCS-CCCSSCCEE-BTTTCCEECTTSEEEEES
T ss_pred Ccchhhhhccc-eeccCCCcc-ccccCCeeecccCCEeee
Confidence 34568888753 346899984 666999999999987764
No 168
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.63 E-value=34 Score=20.80 Aligned_cols=12 Identities=25% Similarity=0.744 Sum_probs=10.1
Q ss_pred ceeCCCCCCceE
Q psy1749 17 IKCCPMCSVPIE 28 (87)
Q Consensus 17 ~k~CP~C~~~Ie 28 (87)
...||-|+..+.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 468999999886
No 169
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=20.59 E-value=65 Score=20.56 Aligned_cols=30 Identities=27% Similarity=0.568 Sum_probs=16.8
Q ss_pred CceeCCCCCCceEeCCCcCeeeccccceee
Q psy1749 16 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVF 45 (87)
Q Consensus 16 ~~k~CP~C~~~Iek~~GCnhm~C~~C~~~F 45 (87)
.--.||.|+..--+..+-.==.|..|+.-|
T Consensus 35 aky~CpfCgk~~vKR~a~GIW~C~kCg~~~ 64 (103)
T 4a17_Y 35 AKYGCPFCGKVAVKRAAVGIWKCKPCKKII 64 (103)
T ss_dssp SCEECTTTCCEEEEEEETTEEEETTTTEEE
T ss_pred cCCCCCCCCCceeeecCcceEEcCCCCCEE
Confidence 345799998776555443333455454433
No 170
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.57 E-value=30 Score=19.49 Aligned_cols=13 Identities=38% Similarity=0.769 Sum_probs=10.4
Q ss_pred eeCCCCCCceEeC
Q psy1749 18 KCCPMCSVPIEKD 30 (87)
Q Consensus 18 k~CP~C~~~Iek~ 30 (87)
+.||-|+..|+..
T Consensus 57 ~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 57 DKCPMCYTVITFK 69 (75)
T ss_dssp SBCTTTCCBCCCC
T ss_pred CCCccCCceecCc
Confidence 6799999888753
No 171
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=20.37 E-value=73 Score=17.46 Aligned_cols=25 Identities=12% Similarity=0.287 Sum_probs=17.1
Q ss_pred CCceeCCCCCCceEeC-CCcCeeecc
Q psy1749 15 ELIKCCPMCSVPIEKD-EGCAQMLCK 39 (87)
Q Consensus 15 ~~~k~CP~C~~~Iek~-~GCnhm~C~ 39 (87)
.....|+.|+..|... .+-+.-.|.
T Consensus 16 ~~~~~C~~CG~~i~~~~~~r~krFCS 41 (49)
T 2l8e_A 16 ANLLKCEYCGKYAPAEQFRGSKRFCS 41 (49)
T ss_dssp CSEEECTTTCCEEEGGGCTTTSSSCS
T ss_pred CCCCcChhccCccccccCCCCCccCC
Confidence 4557899999999976 334444444
No 172
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=20.29 E-value=24 Score=20.86 Aligned_cols=34 Identities=26% Similarity=0.617 Sum_probs=23.1
Q ss_pred eeCCCCCCceEeCCCcCeeeccccceeeeeccccc-cc
Q psy1749 18 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLAS-LD 54 (87)
Q Consensus 18 k~CP~C~~~Iek~~GCnhm~C~~C~~~FC~~C~~~-~~ 54 (87)
..|+-|...+... .-+.|..|++.||-.|... ..
T Consensus 4 ~~C~~C~~~~~~~---av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 4 VLCQFCDQDPAQD---AVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CBCTTCCSSSCCB---CCEEETTTTEEECHHHHHHHSC
T ss_pred CCCcCCCCCCCCC---ceEECCcCChHHhHHHCHHHhc
Confidence 4588887432111 2357888999999999986 44
Done!