RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1749
(87 letters)
>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 73
Score = 43.5 bits (102), Expect = 6e-08
Identities = 8/40 (20%), Positives = 13/40 (32%)
Query: 17 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDDD 56
C CS + + C +C FC C ++
Sbjct: 18 FLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQ 57
>d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 41.4 bits (97), Expect = 2e-07
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 18 KCCPMCSVPIEKDEGCAQMLCK--RCKHVFCWYCLASLDD 55
K CP C V IEKD GC M+C+ CK FCW CL +
Sbjct: 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46
>d2jnya1 b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405/cg1592
{Corynebacterium glutamicum [TaxId: 1718]}
Length = 59
Score = 27.3 bits (61), Expect = 0.061
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 11 TFDSEL--IKCCPMCSVPIEKDEGCAQMLCKRCKHVF 45
+ D +L + CP P+ E ++ +R +
Sbjct: 2 SLDPQLLEVLACPKDKGPLRYLESEQLLVNERLNLAY 38
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain
{Archaeon Thermoplasma acidophilum, beta chain [TaxId:
2303]}
Length = 107
Score = 27.1 bits (60), Expect = 0.16
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 6 QMGGATFDSELIKCCPMCSVPIEKDEGCAQM 36
+ GGA D++LI V E + +M
Sbjct: 59 KQGGAIDDTQLINKAVSILVRGETEHVVDEM 89
>d2pk7a1 b.171.1.1 (A:3-61) Uncharacterized protein PFL1779
{Pseudomonas fluorescens [TaxId: 294]}
Length = 59
Score = 25.4 bits (56), Expect = 0.37
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 17 IKCCPMCSVPIEKDEGCAQMLCKRCKHVF 45
I CP+C P++ +++ K +
Sbjct: 6 ILACPICKGPLKLSADKTELISKGAGLAY 34
>d2hf1a1 b.171.1.1 (A:2-60) Hypothetical protein CV3345
{Chromobacterium violaceum [TaxId: 536]}
Length = 59
Score = 25.0 bits (55), Expect = 0.54
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 13 DSEL--IKCCPMCSVPIEKDEGCAQMLCKRCKHVF 45
D++ I CP+C P+ D+ +++CK + F
Sbjct: 1 DAKFLEILVCPLCKGPLVFDKSKDELICKGDRLAF 35
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 24.8 bits (54), Expect = 0.61
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 20 CPMCSVPIEKDEGCAQMLCKRCKHVFCWYCL 50
C +C +E E + C H F C+
Sbjct: 8 CAVCLAELEDGEEARFLPR--CGHGFHAECV 36
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 124
Score = 23.9 bits (51), Expect = 2.8
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 17 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYC 49
+ C +C + + + C+ CK C C
Sbjct: 48 VNRCILCGEQLGMLGSASVV-CEDCKKNVCTKC 79
>d1sixa_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate
nucleotidohydrolase (dUTPase) {Mycobacterium
tuberculosis, rv2697c [TaxId: 1773]}
Length = 153
Score = 23.6 bits (50), Expect = 3.7
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 11 TFDSELIKCCPMCSVPIEKDEGCAQMLCKRCKHV 44
LI P + + + + AQ+L +R + V
Sbjct: 98 EIKVALINLDPAAPIVVHRGDRIAQLLVQRVELV 131
>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia
coli [TaxId: 562]}
Length = 235
Score = 23.6 bits (50), Expect = 4.8
Identities = 10/45 (22%), Positives = 12/45 (26%)
Query: 41 CKHVFCWYCLASLDDDFLLRHYDKGPCKNKLGHSRASVIWHRTQV 85
V C LD + DK C R V+W
Sbjct: 111 LLKVRCSQSGQVLDWTGDVTPEDKCHCCQFPAPLRPHVVWFGEMP 155
>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine
transferase {Human (Homo sapiens) [TaxId: 9606]}
Length = 278
Score = 23.3 bits (49), Expect = 5.9
Identities = 9/32 (28%), Positives = 10/32 (31%)
Query: 27 IEKDEGCAQMLCKRCKHVFCWYCLASLDDDFL 58
E D L KR + L L D L
Sbjct: 49 CELDPRLVAELHKRVQGTPVASKLQVLVGDVL 80
>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine
sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId:
485]}
Length = 144
Score = 22.7 bits (48), Expect = 7.6
Identities = 5/46 (10%), Positives = 11/46 (23%), Gaps = 4/46 (8%)
Query: 4 WFQMGGATFDSELIKCCPMCSVPIEKDEGCAQMLCKRCK----HVF 45
G +F + + ++ + HVF
Sbjct: 60 DSGCGWPSFTRPIDAKSVTEHDDFSFNMRRTEVRSRAADSHLGHVF 105
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 22.0 bits (46), Expect = 8.0
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 20 CPMCSVPIEKDEGCAQMLCKRCKHVFCWYCL 50
CP C ++ M+ C H C C+
Sbjct: 6 CPRCKTTKYRNPSLKLMVNV-CGHTLCESCV 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.140 0.514
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 358,313
Number of extensions: 14271
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 60
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.4 bits)