BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17490
(67 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 15 QILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSS 54
+I+VTGG GF+G L+DKL+ ++ + I+ RD GS+
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDIVQRDTGGSA 41
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNS 65
+L+TG TGF+G+ L+ +LLR G + +VR + R++ +S
Sbjct: 76 VLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDS 125
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose
4,6-Dehydratase) From Streptomyces Venezuelae With Nad
And Tyd Bound
Length = 337
Score = 32.3 bits (72), Expect = 0.060, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 15 QILVTGGTGFMGKLLIDKLLR-SFPDIGAIYIMVRD 49
++LVTGG GF+G + +LL ++PD+ A ++V D
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLD 37
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 32.3 bits (72), Expect = 0.060, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 15 QILVTGGTGFMGKLLIDKLLR-SFPDIGAIYIMVRD 49
++LVTGG GF+G + +LL ++PD+ A ++V D
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLD 37
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 15 QILVTGGTGFMGKLLIDKLL 34
+I+VTGG GF+G L+DKL+
Sbjct: 2 RIVVTGGAGFIGSHLVDKLV 21
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 15 QILVTGGTGFMGKLLIDKLL 34
+IL+TGG GF+G L DKL+
Sbjct: 7 RILITGGAGFVGSHLTDKLM 26
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 30.0 bits (66), Expect = 0.31, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 14 GQILVTGGTGFMGKLLIDKLLRS 36
G++ VTGGTGF+G +I LL +
Sbjct: 2 GRVCVTGGTGFLGSWIIKSLLEN 24
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 29.3 bits (64), Expect = 0.59, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 15 QILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDK--KGSSP 55
++LVTGG GF+G I +L PD I I DK GS+P
Sbjct: 5 KLLVTGGMGFIGSNFIRYILEKHPDWEVINI---DKLGYGSNP 44
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 28.9 bits (63), Expect = 0.68, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 15 QILVTGGTGFMGKLLIDKL 33
+IL+TGG GF+G L DKL
Sbjct: 29 RILITGGAGFVGSHLTDKL 47
>pdb|3E82|A Chain A, Crystal Structure Of A Putative Oxidoreductase From
Klebsiella Pneumoniae
pdb|3E82|B Chain B, Crystal Structure Of A Putative Oxidoreductase From
Klebsiella Pneumoniae
pdb|3E82|D Chain D, Crystal Structure Of A Putative Oxidoreductase From
Klebsiella Pneumoniae
pdb|3E82|E Chain E, Crystal Structure Of A Putative Oxidoreductase From
Klebsiella Pneumoniae
Length = 364
Score = 28.9 bits (63), Expect = 0.71, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 21 GTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSV 66
G GF+GK L+RS P + ++ RD EE+VK L V
Sbjct: 14 GYGFVGKTFHAPLIRSVPGLNLAFVASRD------EEKVKRDLPDV 53
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
Query: 14 GQILVTGGTGFMGKLLIDKL----------LRSFPDIGAIYIMVRDKKGSSPEERVKNML 63
G L+TG TGF+G LI+ L +R+ + A Y ++ + EE V+ ML
Sbjct: 151 GNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMML 210
Query: 64 NSV 66
+++
Sbjct: 211 SNI 213
>pdb|2VRB|A Chain A, Crystal Structure Of The Citrobacter Sp.
Triphenylmethane Reductase Complexed With Nadp(H)
Length = 287
Score = 28.9 bits (63), Expect = 0.75, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSS 54
I VTG TG +G L+I LL+ P I I+ +K S+
Sbjct: 3 IAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAST 41
>pdb|2JL1|A Chain A, Structural Insight Into Bioremediation Of
Triphenylmethane Dyes By Citrobacter Sp.
Triphenylmethane Reductase
Length = 287
Score = 28.9 bits (63), Expect = 0.75, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSS 54
I VTG TG +G L+I LL+ P I I+ +K S+
Sbjct: 3 IAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAST 41
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1)
From Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1)
From Archaeoglobus Fulgidus
Length = 313
Score = 28.5 bits (62), Expect = 0.98, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERV 59
I+VTGG GF+G ++DKL S I+V D S EE V
Sbjct: 4 IVVTGGAGFIGSHVVDKLSESNE------IVVIDNLSSGNEEFV 41
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-glucose 4- Epimerase Complex With Nad
Length = 311
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 15 QILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPE 56
++LVTGG GF+G +++ LL ++ + + K+ + P+
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPK 43
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose
Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose
Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDK 50
I+VTGG GF+G + + + PD +++ V DK
Sbjct: 7 IIVTGGAGFIGSNFVHYVYNNHPD---VHVTVLDK 38
>pdb|1UN9|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase From C.
Freundii In Complex With Amp-Pnp And Mg2+
pdb|1UN9|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase From C.
Freundii In Complex With Amp-Pnp And Mg2+
Length = 552
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 28 LLIDKLLRSFPDIGAIYIMVRDKKGSSPEE 57
L++DKLL + P+ G + +M+ + G S E
Sbjct: 239 LMVDKLLAALPETGRLAVMINNLGGVSVAE 268
>pdb|1UN8|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase Of C.
Freundii (Native Form)
pdb|1UN8|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase Of C.
Freundii (Native Form)
Length = 552
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 28 LLIDKLLRSFPDIGAIYIMVRDKKGSSPEE 57
L++DKLL + P+ G + +M+ + G S E
Sbjct: 239 LMVDKLLAALPETGRLAVMINNLGGVSVAE 268
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 26.9 bits (58), Expect = 2.5, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 14 GQILVTGGTGFMGKLLIDKL 33
G L+TG TGF+G LI+ L
Sbjct: 70 GNTLLTGATGFLGAYLIEAL 89
>pdb|3LKM|A Chain A, 1.6 Angstrom Crystal Structure Of The Alpha-Kinase Domain
Of Myosin Heavy Chain Kinase A Complex With Amp
pdb|3LLA|A Chain A, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Amppcp
pdb|3LLA|B Chain B, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Amppcp
Length = 307
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 5 QKVDDFYRDGQILVTGGTGF----MGKLLIDKLLRS 36
Q VDD Y D QI G GF +GK I+K + +
Sbjct: 224 QGVDDLYTDPQIHTPDGKGFGLGNLGKAGINKFITT 259
>pdb|3PDT|A Chain A, Crystal Structure Of The C-Terminal Truncated Alpha-Kinase
Domain Of Myosin Heavy Chain Kinase
Length = 275
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 5 QKVDDFYRDGQILVTGGTGF----MGKLLIDKLLRS 36
Q VDD Y D QI G GF +GK I+K + +
Sbjct: 224 QGVDDLYTDPQIHTPDGKGFGLGNLGKAGINKFITT 259
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting
4,6-dehydratase In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting
4,6-dehydratase In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Gal
Length = 344
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 16 ILVTGGTGFMGKLLIDKLL 34
IL+TGGTG GK + K+L
Sbjct: 24 ILITGGTGSFGKCFVRKVL 42
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Thymidine Diphosphate Bound
Length = 361
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 15 QILVTGGTGFMGKLLIDKLLRSFPD 39
+IL+TGG GF+G ++ ++++ D
Sbjct: 2 KILITGGAGFIGSAVVRHIIKNTQD 26
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 15 QILVTGGTGFMGKLLIDKL 33
+I VTGGTGF+G+ +++ +
Sbjct: 4 KIAVTGGTGFLGQYVVESI 22
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 7 VDDFYRDGQILVTGGTGFMGKLLIDKLLRSFP 38
+DD + IL+TGG GF+G L + P
Sbjct: 4 IDDELENQTILITGGAGFVGSNLAFHFQENHP 35
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 15 QILVTGGTGFMGKLLIDKLLRSFPD 39
+IL+TGG GF+G L+ ++ D
Sbjct: 3 KILITGGAGFIGSALVRYIINETSD 27
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of
Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus
Anthracis Str. Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of
Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus
Anthracis Str. Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of
Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus
Anthracis Str. Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of
Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus
Anthracis Str. Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of
Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus
Anthracis Str. Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of
Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus
Anthracis Str. Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of
Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus
Anthracis Str. Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of
Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus
Anthracis Str. Ames In Complex With Nad
Length = 346
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSF 37
ILVTGG GF+G + L+S+
Sbjct: 27 ILVTGGAGFIGSNFVHYXLQSY 48
>pdb|2VRC|A Chain A, Crystal Structure Of The Citrobacter Sp.
Triphenylmethane Reductase Complexed With Nadp(h)
pdb|2VRC|B Chain B, Crystal Structure Of The Citrobacter Sp.
Triphenylmethane Reductase Complexed With Nadp(h)
pdb|2VRC|C Chain C, Crystal Structure Of The Citrobacter Sp.
Triphenylmethane Reductase Complexed With Nadp(h)
Length = 287
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSS 54
I VTG TG +G L+I L + P I I+ +K S+
Sbjct: 3 IAVTGATGQLGGLVIQHLXAAVPASQIIAIVRNVEKAST 41
>pdb|2VRC|D Chain D, Crystal Structure Of The Citrobacter Sp.
Triphenylmethane Reductase Complexed With Nadp(h)
Length = 287
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSS 54
I VTG TG +G L+I L + P I I+ +K S+
Sbjct: 3 IAVTGATGQLGGLVIQHLXAAVPASQIIAIVRNVEKAST 41
>pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|B Chain B, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|C Chain C, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|D Chain D, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
Length = 320
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 10 FYRDGQILVTGGTGFMGKLL 29
+++ +ILVTGG+G +GK +
Sbjct: 4 YFQSMRILVTGGSGLVGKAI 23
>pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
pdb|4B8W|B Chain B, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
Length = 319
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 10 FYRDGQILVTGGTGFMGKLL 29
+++ +ILVTGG+G +GK +
Sbjct: 3 YFQSMRILVTGGSGLVGKAI 22
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.140 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,159,087
Number of Sequences: 62578
Number of extensions: 75548
Number of successful extensions: 324
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 279
Number of HSP's gapped (non-prelim): 53
length of query: 67
length of database: 14,973,337
effective HSP length: 38
effective length of query: 29
effective length of database: 12,595,373
effective search space: 365265817
effective search space used: 365265817
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)