RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17490
(67 letters)
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 60.7 bits (147), Expect = 4e-13
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNS 65
+L+TG TGF+G+ L+ +LLR G + +VR + R++ +S
Sbjct: 76 VLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDS 125
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK
triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1
MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A*
2gn9_A* 2gna_A*
Length = 344
Score = 38.4 bits (90), Expect = 3e-05
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 9 DFYRDGQILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKK 51
+ + IL+TGGTG GK + K+L + + I + RD+
Sbjct: 17 NMLDNQTILITGGTGSFGKCFVRKVLDTT-NAKKIIVYSRDEL 58
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 37.0 bits (86), Expect = 1e-04
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 10/57 (17%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPDIG-AIYIMVRDKKGS-----SPEERVKNMLNSV 66
+ +TG G +G+ L +L G + +VR + P ++L+
Sbjct: 150 VAITGSRGLVGRALTAQLQTG----GHEVIQLVRKEPKPGKRFWDPLNPASDLLDGA 202
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 36.9 bits (86), Expect = 1e-04
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRD 49
I++TG TG +G + ++ + + I +I VR+
Sbjct: 3 IMLTGATGHLGTHITNQAIAN--HIDHFHIGVRN 34
>1xq6_A Unknown protein; structural genomics, protein structure
initiative, CESG, AT5G02240, NADP, center for
eukaryotic structural genomics; HET: NAP; 1.80A
{Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A*
2q46_A* 2q4b_A*
Length = 253
Score = 36.8 bits (85), Expect = 1e-04
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRD 49
+LVTG +G G+++ KL +VR
Sbjct: 7 VLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRS 39
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 35.7 bits (83), Expect = 3e-04
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFP--DIGAIYIMVRD 49
I +TG TG +G +I+ L+++ P I A +VR+
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQIVA---IVRN 34
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 35.6 bits (82), Expect = 3e-04
Identities = 6/33 (18%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVR 48
+ + G +G G++L+ ++L + ++ R
Sbjct: 21 VFILGASGETGRVLLKEILEQ-GLFSKVTLIGR 52
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 35.4 bits (82), Expect = 4e-04
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPD 39
ILVTG +G +G L+ L +
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGK 25
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 35.3 bits (81), Expect = 5e-04
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 16 ILVTGGTGFMGKLLIDKLLRS-FPDIGAIYIMVRDKKGSSPE 56
+L+ GGTG++GK +++ + P Y++ R + S+ +
Sbjct: 7 VLIVGGTGYIGKRIVNASISLGHP----TYVLFRPEVVSNID 44
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 34.9 bits (80), Expect = 5e-04
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVK 60
IL+ G TG++G+ + L +++VR+ SS E+ +
Sbjct: 7 ILLIGATGYIGRHVAKASLDLGHP---TFLLVRESTASSNSEKAQ 48
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 34.9 bits (80), Expect = 6e-04
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 16 ILVTGGTGFMGKLLIDKLLR 35
I + G TG G ++++
Sbjct: 3 IGIIGATGRAGSRILEEAKN 22
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 34.6 bits (80), Expect = 6e-04
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFP--DIGAIYIMVRD-KKGSSPEER 58
I VTG TG +G L+I LL+ P I AI VR+ +K S+ ++
Sbjct: 3 IAVTGATGQLGGLVIQHLLKKVPASQIIAI---VRNVEKASTLADQ 45
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 34.6 bits (80), Expect = 8e-04
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPDI 40
+LVTG G +G+++ ++L +
Sbjct: 6 LLVTGAAGQLGRVMRERLAPMAEIL 30
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 34.6 bits (80), Expect = 8e-04
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 16 ILVTGGTGFMGKLLIDKLLR 35
V G TG +G +
Sbjct: 16 YAVLGATGLLGHHAARAIRA 35
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET:
NDP; 1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 34.2 bits (78), Expect = 9e-04
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 16 ILVTGGTGFMGKLLIDKLLR 35
I V G TG G ++ + R
Sbjct: 3 IAVLGATGRAGSAIVAEARR 22
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase;
agrobacterium tumefa structural genomics, PSI-2,
protein structure initiative; 1.85A {Agrobacterium
tumefaciens}
Length = 342
Score = 34.3 bits (79), Expect = 0.001
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 16 ILVTGGTGFMGKLLIDKLLR 35
I + G G +G+ L +L++
Sbjct: 17 IAIIGAAGMVGRKLTQRLVK 36
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 34.1 bits (78), Expect = 0.001
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNSV 66
I++TG GF+GK L L +I + + EE +++ L
Sbjct: 3 IVITGAKGFVGKNLKADLT----STTDHHIFEVHR--QTKEEELESALLKA 47
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid
dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter
salexigens}
Length = 267
Score = 34.2 bits (79), Expect = 0.001
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 16 ILVTGGTGFMGKLLIDKLLR 35
+LVTG G +G + L
Sbjct: 5 LLVTGAAGGVGSAIRPHLGT 24
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 33.8 bits (78), Expect = 0.001
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSP 55
+L+ G TG G+ L+D++L P + + R P
Sbjct: 8 VLLAGATGLTGEHLLDRILSE-PTLAKVIAPARKALAEHP 46
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short
chain dehydrogenase reductase, flavonoi oxidoreductase;
HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A*
3i6q_A*
Length = 346
Score = 33.9 bits (77), Expect = 0.001
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKNMLNS 65
+L+ G TGF+G+ + L + YI+ R S + ++ L
Sbjct: 13 VLIAGATGFIGQFVATASLDAHRP---TYILARPGPRSPSKAKIFKALED 59
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula
dsm 2008} PDB: 3r14_A*
Length = 221
Score = 33.8 bits (77), Expect = 0.001
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVKN 61
I + G G + + L LL D+ I + R K P E + +
Sbjct: 8 ITILGAAGQIAQXLTATLLTY-TDM-HITLYGRQLKTRIPPEIIDH 51
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 33.9 bits (78), Expect = 0.001
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 16 ILVTGGTGFMGKLLIDKLLR 35
I++ G +GF+G L+++ L
Sbjct: 7 IVLIGASGFVGSALLNEALN 26
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid,
plant protein; 1.40A {Medicago sativa}
Length = 322
Score = 33.7 bits (78), Expect = 0.002
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 14 GQILVTGGTGFMGKLLIDKLL 34
G++ VTGGTGF+G +I LL
Sbjct: 2 GRVCVTGGTGFLGSWIIKSLL 22
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 33.7 bits (77), Expect = 0.002
Identities = 11/51 (21%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 16 ILVTGGTGFMGKLLIDKLLRS-FPDIGAIYIMVRDKKGSSPEERVKNMLNS 65
IL+ G TG +G+ ++ +++ P Y +VR ++ E + ++++
Sbjct: 5 ILILGPTGAIGRHIVWASIKAGNP----TYALVRKTITAANPETKEELIDN 51
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 33.6 bits (76), Expect = 0.002
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 17 LVTGGTGFMGKLLIDKLLRSFPDIGA--IYIMVRDKKGSSPE 56
L+ G TG +G L + L + G +Y + R + + E
Sbjct: 5 LIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHE 46
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP;
1.80A {Clarkia breweri}
Length = 321
Score = 33.4 bits (76), Expect = 0.002
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEERVK 60
I++ GGTG++GK ++ L +I R S V+
Sbjct: 7 IIIYGGTGYIGKFMVRASLSFSHP---TFIYARPLTPDSTPSSVQ 48
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 32.7 bits (75), Expect = 0.003
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 16 ILVTGGTGFMGKLLIDKLLR 35
I + G TG +GK L+ L
Sbjct: 3 IFIVGSTGRVGKSLLKSLST 22
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 32.6 bits (75), Expect = 0.003
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 16 ILVTGGTGFMGKLLIDKLL 34
V GGTGF+ LL+ LL
Sbjct: 12 ACVVGGTGFVASLLVKLLL 30
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 32.6 bits (75), Expect = 0.004
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 16 ILVTGGTGFMGKLLIDKLL 34
+LVTG GF+ ++++LL
Sbjct: 14 VLVTGANGFVASHVVEQLL 32
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 32.8 bits (75), Expect = 0.004
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 16 ILVTGGTGFMGKLLIDKLLR 35
+L+ G GF+G L ++LLR
Sbjct: 3 VLILGVNGFIGNHLTERLLR 22
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 32.4 bits (74), Expect = 0.004
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 16 ILVTGGTGFMGKLLIDKLLR 35
+L+ G GF+G L ++L
Sbjct: 27 VLILGVNGFIGHHLSKRILE 46
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin
C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana}
SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 32.3 bits (74), Expect = 0.004
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 16 ILVTGGTGFMGKLLIDKLLR 35
I +TG GF+ + +L
Sbjct: 32 ISITGAGGFIASHIARRLKH 51
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural
genomics, APC7755, NADP, P protein structure
initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 32.3 bits (74), Expect = 0.005
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 15 QILVTGGTGFMGKLLIDKLLR 35
++LV G G + + L+ +L
Sbjct: 23 RVLVVGANGKVARYLLSELKN 43
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 31.8 bits (73), Expect = 0.006
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 16 ILVTGGTGFMGKLLIDKLL 34
+ VTG +GF+G L+ +LL
Sbjct: 8 VCVTGASGFIGSWLVMRLL 26
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 31.9 bits (73), Expect = 0.007
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 16 ILVTGGTGFMGKLLIDKLLR 35
++V GG GF+G L+ +LL
Sbjct: 35 VMVVGGAGFVGSNLVKRLLE 54
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 31.8 bits (73), Expect = 0.008
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPDI 40
+L+TGG GF+G L L D+
Sbjct: 4 LLITGGCGFLGSNLASFALSQGIDL 28
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG
KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A
{Flavobacterium frigidimaris}
Length = 312
Score = 31.5 bits (72), Expect = 0.008
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 16 ILVTGGTGFMGKLLIDKLLR 35
IL+ G G +G L KL +
Sbjct: 5 ILIIGACGQIGTELTQKLRK 24
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 31.8 bits (72), Expect = 0.008
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 16 ILVTGGTGFMGKLLIDKLLRS-FPDIGAIYIMVRDKKGSSP 55
IL+ GGTG++G ++ L+ P Y+ R +
Sbjct: 14 ILIFGGTGYIGNHMVKGSLKLGHP----TYVFTRPNSSKTT 50
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid
decarboxylase, structural genomics, STRU genomics
consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo
sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Length = 343
Score = 31.6 bits (72), Expect = 0.009
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 15 QILVTGGTGFMGKLLIDKLLR 35
+IL+TGG GF+G L DKL+
Sbjct: 29 RILITGGAGFVGSHLTDKLMM 49
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 31.7 bits (72), Expect = 0.009
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 16 ILVTGGTGFMGKLLIDKLL 34
+L+ G G + + +I++L
Sbjct: 26 VLILGAGGQIARHVINQLA 44
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM
degradation, flavin reductase, diaphorase, green HAEM
binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP:
c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 31.1 bits (71), Expect = 0.010
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 16 ILVTGGTGFMGKLLIDKLLR 35
I + G TG G + + ++
Sbjct: 6 IAIFGATGQTGLTTLAQAVQ 25
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A
{Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB:
1wvg_A*
Length = 357
Score = 31.0 bits (70), Expect = 0.016
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 9 DFYRDGQILVTGGTGFMG 26
F++ ++ VTG TGF G
Sbjct: 5 SFWQGKRVFVTGHTGFKG 22
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX
NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB:
1ker_A* 1ket_A* 1kep_A*
Length = 348
Score = 30.6 bits (70), Expect = 0.019
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDK 50
I+VTGG GF+G + + + PD +++ V DK
Sbjct: 7 IIVTGGAGFIGSNFVHYVYNNHPD---VHVTVLDK 38
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold,
structural genomics, NPPSFA; HET: NAD; 2.07A
{Pyrococcus horikoshii}
Length = 336
Score = 30.5 bits (70), Expect = 0.021
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDK 50
+LVTGG GF+G I +L PD ++ DK
Sbjct: 6 LLVTGGMGFIGSNFIRYILEKHPD---WEVINIDK 37
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for
structural genomics of infectio diseases, csgid, niaid;
HET: NAD SUC; 3.00A {Bacillus anthracis}
Length = 346
Score = 30.6 bits (70), Expect = 0.022
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPDI 40
ILVTGG GF+G + +L+S+
Sbjct: 27 ILVTGGAGFIGSNFVHYMLQSYETY 51
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 30.2 bits (69), Expect = 0.022
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 16 ILVTGGTGFMGKLLIDKLLR 35
I VTGGTGF+G+ +++ +
Sbjct: 5 IAVTGGTGFLGQYVVESIKN 24
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 30.2 bits (69), Expect = 0.024
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 16 ILVTGGTGFMGKLLIDKLLR 35
IL+TGG GF+G L L+
Sbjct: 10 ILITGGAGFIGGHLARALVA 29
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 30.0 bits (68), Expect = 0.028
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRD 49
++V GGTG G + LL + ++ R+
Sbjct: 8 VVVFGGTGAQGGSVARTLLED--GTFKVRVVTRN 39
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 29.9 bits (68), Expect = 0.030
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 16 ILVTGGTGFMGKLLIDKLLR 35
L+TG GF+G L++ LL+
Sbjct: 30 WLITGVAGFIGSNLLETLLK 49
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 30.0 bits (68), Expect = 0.030
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPD 39
IL+TGG GF+G L + P
Sbjct: 13 ILITGGAGFVGSNLAFHFQENHPK 36
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 30.2 bits (68), Expect = 0.030
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 13 DGQILVTGGTGFMGKLL 29
G +L+TGG G +G+ L
Sbjct: 259 SGTVLITGGMGAIGRRL 275
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase,
carbohydrate metabolism, stress response; HET: NAP ADP
BMA; 2.36A {Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 29.9 bits (68), Expect = 0.031
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 12 RDGQILVTGGTGFMGKLLIDKLLR 35
I+VTGG GF+G ++ L
Sbjct: 45 EGRMIIVTGGAGFIGSNIVKALND 68
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 29.9 bits (68), Expect = 0.031
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 16 ILVTGGTGFMGKLLIDKLLR 35
I+VTGG GF+G ++ L
Sbjct: 2 IIVTGGAGFIGSNIVKALND 21
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 29.9 bits (68), Expect = 0.034
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 16 ILVTGGTGFMGKLLIDKLLR 35
+ +TG G +G + + LL
Sbjct: 24 VFITGICGQIGSHIAELLLE 43
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 29.9 bits (68), Expect = 0.038
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 16 ILVTGGTGFMGKLLIDKLLR 35
L+TG GF+G L++KLL+
Sbjct: 28 WLITGVAGFIGSNLLEKLLK 47
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd
reductase, NADP binding; 1.40A {Emericella nidulans}
SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A*
2vus_A 2vut_A* 2vuu_A*
Length = 352
Score = 29.8 bits (67), Expect = 0.039
Identities = 8/21 (38%), Positives = 8/21 (38%)
Query: 16 ILVTGGTGFMGKLLIDKLLRS 36
I V G TG G LI
Sbjct: 8 IAVVGATGRQGASLIRVAAAV 28
>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain
dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A
{Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*
Length = 337
Score = 29.4 bits (67), Expect = 0.049
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 17/48 (35%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYI--MVRDKKGSSPEERVKN 61
+LVTGG GF IG+ ++ ++ P + V
Sbjct: 3 LLVTGGAGF---------------IGSHFVRQLLAGAYPDVPADEVIV 35
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 29.4 bits (67), Expect = 0.054
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 16 ILVTGGTGFMGKLLIDKLLR 35
I+VTGG GF+G L+DKL+
Sbjct: 3 IVVTGGAGFIGSHLVDKLVE 22
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase,
epimerization, oxidoreductase; 1.88A {Streptomyces
venezuelae}
Length = 525
Score = 29.4 bits (66), Expect = 0.056
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 13 DGQILVTGGTGFMGKLL 29
DG +LVTG
Sbjct: 251 DGTVLVTGAEEPAAAEA 267
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase,
oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora
erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Length = 486
Score = 28.9 bits (65), Expect = 0.069
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 13 DGQILVTGGTGFMGKLL 29
G +LVTGGTG +G +
Sbjct: 226 TGTVLVTGGTGGVGGQI 242
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; HET: NAD; 1.87A {Archaeoglobus
fulgidus}
Length = 313
Score = 28.6 bits (65), Expect = 0.084
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 16 ILVTGGTGFMGKLLIDKLLR 35
I+VTGG GF+G ++DKL
Sbjct: 4 IVVTGGAGFIGSHVVDKLSE 23
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for
infectious disease, ssgcid, isomerase, NAD; HET: NAD
GUD; 1.90A {Burkholderia pseudomallei 1710B}
Length = 341
Score = 28.2 bits (64), Expect = 0.12
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 16 ILVTGGTGFMG 26
ILVTGG G++G
Sbjct: 8 ILVTGGAGYIG 18
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG;
1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A*
1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A*
2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A*
1a9y_A*
Length = 338
Score = 28.2 bits (64), Expect = 0.13
Identities = 7/11 (63%), Positives = 11/11 (100%)
Query: 16 ILVTGGTGFMG 26
+LVTGG+G++G
Sbjct: 3 VLVTGGSGYIG 13
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces
nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Length = 496
Score = 28.1 bits (63), Expect = 0.15
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 13 DGQILVTGGTGFMGKLL 29
G +LVTGGTG +G +
Sbjct: 239 HGSVLVTGGTGGIGGRV 255
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET:
NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Length = 311
Score = 27.9 bits (63), Expect = 0.16
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 16 ILVTGGTGFMGKLLIDKLLR 35
+LVTGG GF+G +++ LL
Sbjct: 3 VLVTGGAGFIGSHIVEDLLA 22
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, protein-nucleotide comple binding
protein; HET: NAD UDP; 2.00A {Bordetella
bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Length = 330
Score = 27.9 bits (63), Expect = 0.18
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 16 ILVTGGTGFMGKLLIDKLLR 35
IL+TGG G +G LI+ L
Sbjct: 23 ILITGGAGCLGSNLIEHWLP 42
>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET:
TYD NAD; 1.80A {Salmonella enterica subsp} SCOP:
c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*
Length = 361
Score = 27.5 bits (62), Expect = 0.24
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 16 ILVTGGTGFMG 26
IL+TGG GF+G
Sbjct: 3 ILITGGAGFIG 13
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 27.4 bits (61), Expect = 0.28
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 16 ILVTGGTGFMG 26
+LVTGG G++G
Sbjct: 14 VLVTGGAGYIG 24
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase,
galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A*
1i3l_A* 1i3m_A* 1i3n_A*
Length = 348
Score = 27.5 bits (62), Expect = 0.29
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 16 ILVTGGTGFMG 26
+LVTGG G++G
Sbjct: 5 VLVTGGAGYIG 15
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha,
beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus
tokodaii}
Length = 273
Score = 26.8 bits (60), Expect = 0.43
Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYIMVRDKKGSSPEE 57
L+TG +G +G +L R + + + + +
Sbjct: 3 TLITGASGQLGI----ELSRLLSERHEVIKVYNSSEIQGGYK 40
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 26.6 bits (59), Expect = 0.48
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 16 ILVTGGTGFMGKLLIDKLL 34
++V GG G+ G L
Sbjct: 14 VMVIGGDGYCGWATALHLS 32
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A
{Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Length = 397
Score = 26.1 bits (58), Expect = 0.76
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 16 ILVTGGTGFMG 26
+LV GG G++G
Sbjct: 5 VLVCGGAGYIG 15
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 26.0 bits (57), Expect = 0.83
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 13 DGQILVTGGTGFMGKLLIDKLLR 35
++TGG G G L L
Sbjct: 1884 HKSYVITGGLGGFGLQLAQWLRL 1906
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton,
protein COM cytoskeletal protein; HET: GTP; 2.5A
{Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB:
2btq_A*
Length = 473
Score = 25.9 bits (57), Expect = 1.0
Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 20 GGTGF-MGKLLIDKLLRSFPD 39
GGTG G LLI+ L + +
Sbjct: 145 GGTGSGFGALLIESLKEKYGE 165
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex,
bacterial tubulin, cytoskeleton, polymerization,
verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter
dejongeii}
Length = 426
Score = 25.5 bits (56), Expect = 1.2
Identities = 7/21 (33%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Query: 20 GGTGF-MGKLLIDKLLRSFPD 39
GG+G +G L++++L +++P
Sbjct: 142 GGSGSGLGSLILERLRQAYPK 162
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A*
3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A*
3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A*
2wbe_A* 3dco_A* ...
Length = 451
Score = 25.5 bits (56), Expect = 1.2
Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 20 GGTGF-MGKLLIDKLLRSFPD 39
GGTG LL+++L +
Sbjct: 143 GGTGSGFTSLLMERLSVDYGK 163
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose
metabolism, isomerase, NAD, spine; HET: NAD; 2.7A
{Bacillus anthracis}
Length = 330
Score = 25.1 bits (56), Expect = 1.5
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 16 ILVTGGTGFMG 26
IL+ GG G++G
Sbjct: 4 ILICGGAGYIG 14
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule,
nucleation, GTPase, lateral interaction, structural
protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB:
1z5v_A* 1z5w_A*
Length = 475
Score = 25.4 bits (56), Expect = 1.6
Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 20 GGTGF-MGKLLIDKLLRSFPD 39
GGTG +G L+++L +P
Sbjct: 143 GGTGSGLGSYLLERLNDRYPK 163
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B;
3D-structure, structural genomics, NPPSFA; HET: PEG;
1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Length = 178
Score = 24.9 bits (55), Expect = 1.9
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 8/47 (17%)
Query: 16 ILVTGGTGFMG--------KLLIDKLLRSFPDIGAIYIMVRDKKGSS 54
I+ TGGTG+ + L D+ + F D+ + + ++
Sbjct: 85 IISTGGTGYSPTDITVETIRKLFDREIEGFSDVFRLVSFNDPEVKAA 131
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate
aldolase; sequestered tunnel, substrate channeling;
HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1
Length = 312
Score = 24.9 bits (54), Expect = 2.4
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 21 GTGFMGKLLIDKLLRSFPDIGAIYIMVRDKK 51
G+G +G L+ K+LR+ + ++ D
Sbjct: 11 GSGNIGTDLMIKVLRNAKYLEMGAMVGIDAA 41
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode
biostructures, niaid, amino-acid biosynthesis,
cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Length = 288
Score = 24.5 bits (54), Expect = 3.0
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPDI 40
+ V G G MG+ LI ++ D+
Sbjct: 24 LTVVGANGRMGRELI-TAIQRRKDV 47
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics,
protein structure initiative, PSI, MCSG, midwest center
for structural genomics; 1.90A {Bacillus cereus} SCOP:
c.57.1.1
Length = 169
Score = 24.5 bits (54), Expect = 3.1
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 8/33 (24%)
Query: 16 ILVTGGTGFMG--------KLLIDKLLRSFPDI 40
+L GGTG L+DK + F ++
Sbjct: 76 VLTNGGTGITKRDVTIEAVSALLDKEIVGFGEL 108
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous
signal, molybdopterin synthesis, structural genomics,
PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1
PDB: 1r2k_B
Length = 172
Score = 24.1 bits (53), Expect = 3.2
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 16 ILVTGGTGF 24
+L+TGGTG
Sbjct: 73 VLITGGTGL 81
>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein
fermentation; 2.50A {Acidaminococcus fermentans} SCOP:
c.124.1.2
Length = 317
Score = 24.3 bits (53), Expect = 3.3
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 7 VDDFYRDGQILVTGGTGFMGK--LLIDKLLRS 36
+ + G + GG K + ++LR
Sbjct: 10 IAKYVHSGDHIALGGFTTDRKPYAAVFEILRQ 41
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase;
2.25A {Homo sapiens} PDB: 2ydx_A
Length = 315
Score = 24.1 bits (53), Expect = 3.9
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPDIGAIYI 45
+LVTG TG +G+ + + F +
Sbjct: 5 VLVTGATGLLGR----AVHKEFQQNNWHAV 30
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A
{Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A*
1dru_A* 1drv_A* 1drw_A*
Length = 273
Score = 24.1 bits (53), Expect = 4.0
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPDI 40
+ + G G MG+ LI + + +
Sbjct: 8 VAIAGAGGRMGRQLI-QAALALEGV 31
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A
{Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Length = 189
Score = 23.8 bits (52), Expect = 4.3
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 16 ILVTGGTGF 24
IL TGGTGF
Sbjct: 82 ILTTGGTGF 90
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
2.10A {Burkholderia thailandensis}
Length = 272
Score = 24.1 bits (53), Expect = 4.4
Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPDI 40
I + G +G MG++LI + + + PD
Sbjct: 10 IAIAGASGRMGRMLI-EAVLAAPDA 33
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural
genomics, PSI, protein structure initiative; 1.50A
{Corynebacterium diphtheriae} SCOP: c.57.1.1
Length = 167
Score = 23.8 bits (52), Expect = 4.8
Identities = 5/9 (55%), Positives = 6/9 (66%)
Query: 16 ILVTGGTGF 24
I+ GGTG
Sbjct: 73 IITAGGTGI 81
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA;
3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Length = 660
Score = 23.8 bits (52), Expect = 4.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 16 ILVTGGTGFMGKLLIDKLLRS 36
+L+ G GF+G L ++LLR
Sbjct: 318 VLILGVNGFIGNHLTERLLRE 338
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison
hydrolase; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB:
3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
Length = 326
Score = 23.7 bits (52), Expect = 5.3
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 12/40 (30%)
Query: 16 ILVTGGT------------GFMGKLLIDKLLRSFPDIGAI 43
IL TGGT +GK+ ++ L+ + P + I
Sbjct: 6 ILATGGTIAGGGDSATKSNYTVGKVGVENLVNAVPQLKDI 45
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB:
1e5l_A* 1e5q_A
Length = 450
Score = 23.7 bits (50), Expect = 5.3
Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 16 ILVTGGTGFMGKLLIDKLLRSFPDI 40
+L+ G+GF+ + +D L S +
Sbjct: 6 VLM-LGSGFVTRPTLDVLTDSGIKV 29
>2xu0_A Erythrocyte membrane protein 1; adhesion, virulence,
duffy-binding-like-DO; 2.06A {Plasmodium falciparum palo
alto}
Length = 487
Score = 24.0 bits (52), Expect = 5.4
Identities = 10/18 (55%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 33 LLRSFPDIGAIYIMVRDK 50
L RSF DIG I VR +
Sbjct: 192 LARSFADIGDI---VRGR 206
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta
fold, structu genomics, NPPSFA; 1.64A {Thermus
thermophilus} PDB: 3mch_A
Length = 164
Score = 23.7 bits (52), Expect = 5.6
Identities = 6/9 (66%), Positives = 6/9 (66%)
Query: 16 ILVTGGTGF 24
IL GGTG
Sbjct: 66 ILTNGGTGL 74
>1wsa_A Asparaginase, asparagine amidohydrolase; periplasmic; 2.20A
{Wolinella succinogenes} SCOP: c.88.1.1
Length = 330
Score = 23.7 bits (52), Expect = 5.6
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 13/47 (27%)
Query: 16 ILVTGGT------------GFMGKLLIDKLLRSFPDIGAIY-IMVRD 49
IL TGGT G + +DKLL + P I + I
Sbjct: 8 ILATGGTIAGSGESSVKSSYSAGAVTVDKLLAAVPAINDLATIKGEQ 54
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI
biosynthetic protein; 1.80A {Mycobacterium avium subsp}
PDB: 3oi9_A 2g4r_A
Length = 164
Score = 23.4 bits (51), Expect = 6.3
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 16 ILVTGGTGF 24
IL +GGTG
Sbjct: 70 ILTSGGTGI 78
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum
cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis
thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A
1uux_A* 1eav_A
Length = 167
Score = 23.4 bits (51), Expect = 6.9
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 16 ILVTGGTGF 24
IL GGTGF
Sbjct: 75 ILTLGGTGF 83
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT,
structural genomics, NPPSFA, national PR protein
structural and functional analyses; 1.70A {Aquifex
aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A
2f7y_A 2fuw_A
Length = 178
Score = 23.4 bits (51), Expect = 6.9
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 16 ILVTGGTGF 24
IL TGGTG
Sbjct: 72 ILTTGGTGP 80
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural
genomics, seattle structural genomics center for
infectious disease, ssgcid; HET: B3P; 2.25A
{Mycobacterium marinum} PDB: 3tcr_A
Length = 185
Score = 23.4 bits (51), Expect = 7.3
Identities = 4/9 (44%), Positives = 6/9 (66%)
Query: 16 ILVTGGTGF 24
++ GGTG
Sbjct: 93 VVSVGGTGV 101
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain
dehydrogenase/reductase, rossmann fold, oxidoreductase;
HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Length = 321
Score = 23.3 bits (51), Expect = 7.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 17 LVTGGTGFMGKLLIDKLL 34
L+TG GF+GK L + L
Sbjct: 16 LITGVAGFVGKYLANHLT 33
>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB:
2wt4_A
Length = 332
Score = 23.3 bits (51), Expect = 8.2
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 12/40 (30%)
Query: 16 ILVTGGT------------GFMGKLLIDKLLRSFPDIGAI 43
+L TGGT G+L + +LL++ P + I
Sbjct: 10 LLATGGTIAGSGVDASLGSYKSGELGVKELLKAIPSLNKI 49
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics,
protein structure initiative, PSI, joint center for
structu genomics; HET: NAD PG4; 2.27A {Thermotoga
maritima} SCOP: c.2.1.3 d.81.1.3
Length = 228
Score = 23.3 bits (51), Expect = 8.2
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 16 ILVTGGTGFMGKLLID 31
+ G +G MG+ +
Sbjct: 15 YGIVGYSGRMGQEIQK 30
>3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics,
center for structural genomics of infec diseases,
csgid, isomerase; HET: MSE; 1.89A {Campylobacter
jejuni}
Length = 203
Score = 23.2 bits (51), Expect = 8.6
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 9/30 (30%)
Query: 3 EEQKVDDF------YRDGQILVTG---GTG 23
E DF Y++ ILV+ G+G
Sbjct: 56 ESVLNMDFNLNKKEYQNSSILVSFENFGSG 85
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.140 0.391
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,069,233
Number of extensions: 53135
Number of successful extensions: 318
Number of sequences better than 10.0: 1
Number of HSP's gapped: 318
Number of HSP's successfully gapped: 106
Length of query: 67
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 29
Effective length of database: 5,640,795
Effective search space: 163583055
Effective search space used: 163583055
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)