BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17493
(101 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 49/56 (87%)
Query: 18 VSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEAS 73
V+ QVS+ERGE+LA++YGIKFMETSAK +INVE+AFFTLARDIKA+ +K +A+
Sbjct: 125 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWKAT 180
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/52 (73%), Positives = 47/52 (90%)
Query: 18 VSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKK 69
V+ QVS+ERGE+LA++YGIKFMETSAK +INVE+AFFTLARDIKA+ +KK
Sbjct: 123 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK 174
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEK 68
V RE GE+LA EYG+ FMETSAK +NV+ AF +A+++K ++ K
Sbjct: 134 VKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMK 178
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 33/44 (75%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTE 67
V+ + G +LA +GIKF+ETSAKN+ NVE AF T+A +IK + +
Sbjct: 132 VTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRVQ 175
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPP 76
V + + LA YGI ++ETSAK VEDAF+TL R+I+ +KL NPP
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKL---NPP 174
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%)
Query: 18 VSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKL 70
+ S V RE GE A E+G+ FMETSAK + NVE+AF A++I + ++ L
Sbjct: 138 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGL 190
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKL 70
V ++ +LA YGI F+ETSAK VEDAF+TL R+I+ KKL
Sbjct: 143 VDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKL 189
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 19 SSMPQ--VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEK 68
S +P V ++ + LA YGI F+ETSAK V+DAF+TL R+I+ EK
Sbjct: 119 SDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 19 SSMPQ--VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEK 68
S +P V ++ + LA YGI F+ETSAK V+DAF+TL R+I+ EK
Sbjct: 119 SDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 19 SSMPQ--VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEK 68
S +P V ++ + LA YGI F+ETSAK V+DAF+TL R+I+ EK
Sbjct: 119 SDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEK 68
V ++ + LA YGI F+ETSAK V+DAF+TL R+I+ EK
Sbjct: 143 VDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEK 187
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKL 70
V + + LA YGI ++ETSAK VEDAF+TL R+I+ +KL
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKL 171
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKL 70
V + + LA YGI ++ETSAK VEDAF+TL R+I+ +KL
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKL 171
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTE 67
V ++ + LA YGI F+ETSAK V+DAF+TL R+I+ E
Sbjct: 126 VDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKE 169
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 31/45 (68%)
Query: 18 VSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
+ S +V +E GE A E+G+ FMETSAK + NVE+AF A++I
Sbjct: 127 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 171
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTE 67
V+ ++GE LA E GI F+E+SAKN NV + FFTLA+ I+ + +
Sbjct: 142 VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID 185
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTE 67
V+ ++GE LA E GI F+E+SAKN NV + FFTLA+ I+ + +
Sbjct: 129 VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID 172
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTE 67
V+ ++GE LA E GI F+E+SAKN NV + FFTLA+ I+ + +
Sbjct: 125 VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID 168
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTE 67
V+ ++GE LA E GI F+E+SAKN NV + FFTLA+ I+ + +
Sbjct: 125 VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID 168
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTE 67
V+ ++GE LA E GI F+E+SAKN NV + FFTLA+ I+ + +
Sbjct: 125 VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID 168
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 130 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 169
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 130 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 169
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 131 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 170
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 130 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 169
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 132 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 171
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGG 79
VS ERG QLA G +F E SAK++INV+ F L I + + L+ ++P G
Sbjct: 131 VSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSESLDTADPAVTG 186
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 29 GEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQT 66
GE+LA+ YG F ETSAK+ N+ +A LAR++K +T
Sbjct: 162 GEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKRT 199
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+ +
Sbjct: 125 VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREFR 164
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
+V+RE GE+LA E G+ F ETSAK NV D F + I
Sbjct: 128 KVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V ++ A GI F+ETSAKN+ NVE AF T+A +IK
Sbjct: 132 VDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIK 171
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V ++ A GI F+ETSAKN+ NVE AF T+A +IK
Sbjct: 132 VDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIK 171
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
QV++E G+QLA + + +ME SAK +NV+ AF L R I+
Sbjct: 127 QVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 167
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 40 FMETSAKNSINVEDAFFTLARDIK-AQTEKKLEASNP---PKGGIHVKS 84
F+ETSA +S NVEDAF T+AR IK + +++ L + KG +++K
Sbjct: 147 FLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKGNVNLKG 195
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 40 FMETSAKNSINVEDAFFTLARDIK-AQTEKKLEASNP---PKGGIHVKS 84
F+ETSA +S NVEDAF T+AR IK + +++ L + KG +++K
Sbjct: 147 FLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKGNVNLKG 195
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V ++ A GI F+ETSAKN+ NVE +F T+A +IK
Sbjct: 139 VDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 178
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 12 IEVPNFVSSMP--QVSRERGEQLAIEYGIKFMETSAKN-SINVEDAFFTLARDIKAQ 65
I V N V M +V+R++G+++A +Y I ++ETSAK+ +NV+ F L R I+ Q
Sbjct: 127 ILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 12 IEVPNFVSSMP--QVSRERGEQLAIEYGIKFMETSAKN-SINVEDAFFTLARDIKAQ 65
I V N V M +V+R++G+++A +Y I ++ETSAK+ +NV+ F L R I+ Q
Sbjct: 127 ILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 12 IEVPNFVSSMP--QVSRERGEQLAIEYGIKFMETSAKN-SINVEDAFFTLARDIKAQ 65
I V N V M +V+R++G+++A +Y I ++ETSAK+ +NV+ F L R I+ Q
Sbjct: 122 ILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 178
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 12 IEVPNFVSSMP--QVSRERGEQLAIEYGIKFMETSAKN-SINVEDAFFTLARDIKAQ 65
I V N V M +V+R++G+++A +Y I ++ETSAK+ +NV+ F L R I+ Q
Sbjct: 127 ILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V ++ A GI F+ETSAKN+ NVE +F T+A +IK
Sbjct: 139 VDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 178
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V ++ A GI F+ETSAKN+ NVE +F T+A +IK
Sbjct: 131 VDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 170
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V ++ A GI F+ETSAKN+ NVE +F T+A +IK
Sbjct: 148 VDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 187
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 38.5 bits (88), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V ++ A GI F+ETSAKN+ NVE +F T+A +IK
Sbjct: 122 VDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 161
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 38.5 bits (88), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V ++ A GI F+ETSAKN+ NVE +F T+A +IK
Sbjct: 129 VDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 168
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 38.5 bits (88), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 20/24 (83%)
Query: 40 FMETSAKNSINVEDAFFTLARDIK 63
F+ETSA +S NVEDAF T+AR IK
Sbjct: 160 FLETSALDSTNVEDAFLTMARQIK 183
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 38.5 bits (88), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V ++ A GI F+ETSAKN+ NVE +F T+A +IK
Sbjct: 129 VDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 168
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAF 55
VS ERG QLA G +F E SAK++INV+ F
Sbjct: 128 VSSERGRQLADHLGFEFFEASAKDNINVKQTF 159
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEAS 73
QVS E + A ++ + ++ETSAK NV+ FF L R+I+A +K+E S
Sbjct: 136 QVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA---RKMEDS 183
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEAS 73
QVS E + A ++ + ++ETSAK NV+ FF L R+I+A +K+E S
Sbjct: 128 QVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA---RKMEDS 175
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEAS 73
QVS E + A ++ + ++ETSAK NV+ FF L R+I+A +K+E S
Sbjct: 140 QVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA---RKMEDS 187
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEAS 73
QVS E + A ++ + ++ETSAK NV+ FF L R+I+A +K+E S
Sbjct: 128 QVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA---RKMEDS 175
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65
QVS E + A ++ + ++ETSAK NV+ FF L R+I+A+
Sbjct: 126 QVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65
QV E A E+G++++ETSAK NV+ FF L R+I+ +
Sbjct: 126 QVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 168
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65
QV E A E+G++++ETSAK NV+ FF L R+I+ +
Sbjct: 130 QVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 172
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
V+ E +Q A E G+ F+E SAK NVEDAF A+ I
Sbjct: 138 VTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
V+ E +Q A E G+ F+E SAK NVEDAF A+ I
Sbjct: 153 VTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 191
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V ++ A GI F+ETSAKN+ NVE +F T A +IK
Sbjct: 156 VDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEIK 195
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 23 QVSRERGEQLAIEY-GIKFMETSAKNSINVEDAFFTLARDI 62
+++R++GE+ A + G++F E SAK++ NV++ F L DI
Sbjct: 148 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
+V+ E + A E G+ FMETSAK + NV++ F+ +AR +
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 11 YIEVPNFV-----SSMP---QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
Y E P+ V + +P +V+ + +LA +YGI + ETSA NVE + TL I
Sbjct: 124 YCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183
Query: 63 KAQTEKKLEASNPP 76
+ EK +E + P
Sbjct: 184 MKRMEKCVEKTQVP 197
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 24 VSRERGEQLAIEY-GIKFMETSAKNSINVEDAFFTLARDI 62
V +E+G+ LA ++ F+E+SAK+ INV + F+ L R I
Sbjct: 126 VGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 11 YIEVPNFV-----SSMP---QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
Y E P+ V + +P +V+ + +LA +YGI + ETSA NVE A TL I
Sbjct: 138 YCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197
Query: 63 KAQTEKKLEASNPP 76
+ E+ +E + P
Sbjct: 198 MKRMEQCVEKTQIP 211
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 24 VSRERGEQLAIEY-GIKFMETSAKNSINVEDAFFTLARDI 62
V +E+G+ LA ++ F+E+SAK+ INV + F+ L R I
Sbjct: 126 VGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 11 YIEVPNFV-----SSMP---QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
Y E P+ V + +P +V+ + +LA +YGI + ETSA NVE + TL I
Sbjct: 124 YCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183
Query: 63 KAQTEKKLEASNPP 76
+ EK +E + P
Sbjct: 184 XKRXEKCVEKTQVP 197
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 23 QVSRERGEQLAI-EYGIKFMETSAKNSINVEDAFFTLARD-IKAQTEKKL 70
QV+ +R + + I + ETSAK +INVE AF T+AR+ +K +TE +L
Sbjct: 133 QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVEL 182
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 23 QVSRERGEQLAI-EYGIKFMETSAKNSINVEDAFFTLARD-IKAQTEKKL 70
QV+ +R + + I + ETSAK +INVE AF T+AR+ +K +TE +L
Sbjct: 133 QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVEL 182
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 23 QVSRERGEQLAI-EYGIKFMETSAKNSINVEDAFFTLARD-IKAQTEKKL 70
QV+ +R + + I + ETSAK +INVE AF T+AR+ +K +TE +L
Sbjct: 133 QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVEL 182
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 24 VSRERGEQLAIEYG-IKFMETSAKNSINVEDAFFTLARDI 62
V +E+G+ LA ++ F+E+SAK+ INV + F+ L R I
Sbjct: 128 VGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 24 VSRERGEQLAIEYG-IKFMETSAKNSINVEDAFFTLARDI 62
V +E+G+ LA ++ F+E+SAK+ INV + F+ L R I
Sbjct: 126 VGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 23 QVSRERGEQLAI-EYGIKFMETSAKNSINVEDAFFTLARD-IKAQTEKKL 70
QV+ +R + + I + ETSAK +INVE AF T+AR+ +K +TE +L
Sbjct: 133 QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVEL 182
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 11 YIEVPNFV-----SSMP---QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
Y E P+ V + +P +V+ + +LA +YGI + ETSA NVE + TL I
Sbjct: 124 YCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183
Query: 63 KAQTEKKLEASNPP 76
+ EK +E + P
Sbjct: 184 MKRMEKCVEKTQVP 197
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 18 VSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKK 69
+S +V E A G+ F+ETSA +S NVE AF T+ ++I A+ K+
Sbjct: 142 LSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 18 VSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKK 69
+S +V E A G+ F+ETSA +S NVE AF T+ ++I A+ K+
Sbjct: 127 LSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
V E + A + + FMETSAK ++NV D F +A+ +
Sbjct: 131 VEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAF 55
Q++ E GEQ A E + F+ETSAK NV+ F
Sbjct: 124 QITIEEGEQRAKELSVMFIETSAKTGYNVKQLF 156
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 18 VSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAF 55
+S QVS E GE+ A E + F+ETSAK NV+ F
Sbjct: 131 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 168
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 23 QVSRERGEQLAIEYGIKFMETSA-KNSINVEDAFFTLARDIK 63
QVS E GE+LA E F E SA N+ + F+ L R+++
Sbjct: 149 QVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVR 190
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 11 YIEVPNFV-----SSMP---QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
Y E P+ V + +P +V+ + +LA +YGI + ETSA NVE + TL I
Sbjct: 124 YCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183
Query: 63 KAQTEKKLEAS 73
+ EK +E +
Sbjct: 184 XKRXEKCVEKT 194
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 18 VSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKL 70
+ S QV R + + + E SAK +NV++AF L R ++ E++L
Sbjct: 126 LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQEL 178
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 32.0 bits (71), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHV 82
QVS E GE+ A E + F+ETSAK NV+ F +A + + + I +
Sbjct: 135 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQ---DRSREDMIDI 191
Query: 83 KSSEPNRKPPSWLSKCSIL 101
K +P +P S CS L
Sbjct: 192 KLEKPQEQPVSE-GGCSCL 209
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 32.0 bits (71), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLA 59
+VS++R E+ + + ++ETSAK S NVE F LA
Sbjct: 148 EVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA 184
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 32.0 bits (71), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLA 59
QVS E GE+ A E + F+ETSAK NV+ F +A
Sbjct: 138 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 174
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLA 59
QVS E GE+ A E + F+ETSAK NV+ F +A
Sbjct: 128 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 164
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAF 55
QVS E GE+ A E + F+ETSAK NV+ F
Sbjct: 128 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 160
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAF 55
QVS E GE+ A E + F+ETSAK NV+ F
Sbjct: 123 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 155
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 18 VSSMPQVSRERGEQLAIEYGIKF-METSAKNSINVEDAFFTLARDI 62
+S + +VS + LA Y I +ETSAK+S NVE+AF +A ++
Sbjct: 146 LSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 31.2 bits (69), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEAS 73
V E +LA +YGI + ETSA N N+ A L I + E+ ++ S
Sbjct: 145 VKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMERSVDKS 194
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 27 ERGEQLAIEYGIKFMETSAKNSINVEDAF 55
E G +LA + G +F E SAK +INV+ F
Sbjct: 148 EDGRRLADDLGFEFFEASAKENINVKQVF 176
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 18 VSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
+S + +V + ++ A G +ETSAKN+IN+E+ F ++R I
Sbjct: 140 LSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKK 69
+VS + G A+ + KF+ETSA NV+ F + R I+ + + K
Sbjct: 128 EVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSK 174
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKK 69
+VS + G A+ + KF+ETSA NV+ F + R I+ + + K
Sbjct: 128 EVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSK 174
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 29 GEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
G LA E+G FMETSAK+ V++ F + R +
Sbjct: 131 GRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
V + + A + + FMETSAK S+NV + F +A+ +
Sbjct: 129 VDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
V + + A + + FMETSAK S+NV + F +A+ +
Sbjct: 129 VDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
V + + A + + FMETSAK S+NV + F +A+ +
Sbjct: 129 VDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 27 ERGEQLAIEYGIKFMETSAKNSINVEDAF 55
E+G+ LA + G F E SAK +I+V AF
Sbjct: 149 EKGQLLAEQLGFDFFEASAKENISVRQAF 177
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
V + + A + + FMETSAK S+NV + F +A+ +
Sbjct: 130 VDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
V + + A + + FMETSAK S+NV + F +A+ +
Sbjct: 129 VDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
V + + A + + FMETSAK S+NV + F +A+ +
Sbjct: 128 VDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
V + + A + + FMETSAK S+NV + F +A+ +
Sbjct: 129 VDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
V + + A + + FMETSAK S+NV + F +A+ +
Sbjct: 129 VDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 29.6 bits (65), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKK 69
+VS G A+ + KF+ETSA NV++ F + R ++ + + K
Sbjct: 162 EVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSK 208
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 37 GIKFMETSAKNSINVEDAFFTLARDI 62
G+ F+ETSA +S NVE AF T+ +I
Sbjct: 156 GLSFIETSALDSTNVEAAFQTILTEI 181
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 37 GIKFMETSAKNSINVEDAFFTLARDI 62
G+ F+ETSA +S NVE AF T+ +I
Sbjct: 165 GLSFIETSALDSTNVEAAFQTILTEI 190
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 37 GIKFMETSAKNSINVEDAFFTLARDI 62
G+ F+ETSA +S NVE AF T+ +I
Sbjct: 165 GLSFIETSALDSTNVEAAFQTILTEI 190
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 37 GIKFMETSAKNSINVEDAFFTLARDI 62
G+ F+ETSA +S NVE AF T+ +I
Sbjct: 141 GLSFIETSALDSTNVEAAFQTILTEI 166
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 37 GIKFMETSAKNSINVEDAFFTLARDI 62
G+ F+ETSA +S NVE AF T+ +I
Sbjct: 144 GLSFIETSALDSTNVEAAFQTILTEI 169
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 37 GIKFMETSAKNSINVEDAFFTLARDI 62
G+ F+ETSA +S NVE AF T+ +I
Sbjct: 147 GLSFIETSALDSTNVEAAFQTILTEI 172
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAF 55
V E + A + GI+ ETSAK ++NVE+ F
Sbjct: 131 VETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 18 VSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAF 55
+ + +V+ E G Q A EY F ETSAK N++ F
Sbjct: 118 LGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLF 155
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 24 VSRERGEQLAIEYG-IKFMETSAKNSINVEDAFFTLAR 60
VS + ++LA G I TSAKN+INV+ AF +AR
Sbjct: 137 VSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIAR 174
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 40 FMETSAKNSINVEDAFFTLARDI 62
F+ETSAKN+IN+ + F ++R I
Sbjct: 144 FVETSAKNAININELFIEISRRI 166
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 40 FMETSAKNSINVEDAFFTLARDI 62
F+ETSAKN+IN+ + F ++R I
Sbjct: 145 FVETSAKNAININELFIEISRRI 167
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
+VS + G A+ + KF+ETSA NV+ F + R I+
Sbjct: 123 EVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIR 163
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 15 PNFVSSMPQVSRERGEQLAIEY----------GIKFMETSAKNSINVEDAFFTLARDI 62
PN V ++ + + A+E+ + FMETSAK ++NV + F +A+ +
Sbjct: 109 PNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 15 PNFVSSMPQVSRERGEQLAIEY----------GIKFMETSAKNSINVEDAFFTLARDI 62
PN V ++ + + A+E+ + FMETSAK ++NV + F +A+ +
Sbjct: 107 PNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 15 PNFVSSMPQVSRERGEQLAIEY----------GIKFMETSAKNSINVEDAFFTLARDI 62
PN V ++ + + A+E+ + FMETSAK ++NV + F +A+ +
Sbjct: 109 PNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 28.5 bits (62), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAF------FTLARDIKAQTEKKL 70
+VS G A+ + KF+ETSA NV++ F L RD K + E++L
Sbjct: 131 EVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNERRL 184
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAF------FTLARDIKAQTEKKL 70
+VS G A+ + KF+ETSA NV++ F L RD K + E++L
Sbjct: 131 EVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNERRL 184
>pdb|2YRQ|A Chain A, Solution Structure Of The Tandem Hmg Box Domain From Human
High Mobility Group Protein B1
Length = 173
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNS-------INVEDAFFTLARDIKAQTEKKLEASNP 75
Q RE ++ + + F E S K S + F +A+ KA+ E++++ P
Sbjct: 28 QTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIP 87
Query: 76 PKGGIHVKSSEPN--RKPPS 93
PKG K +PN ++PPS
Sbjct: 88 PKGETKKKFKDPNAPKRPPS 107
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
+VS G A+ + KF+ETSA NV++ F + R ++
Sbjct: 131 EVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVR 171
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 31 QLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
+ A E + F+ETSA NVE+AF AR I
Sbjct: 155 RFAQENELMFLETSALTGENVEEAFLKCARTI 186
>pdb|2ZU2|A Chain A, Complex Structure Of Cov 229e 3cl Protease With Epdtc
pdb|2ZU2|B Chain B, Complex Structure Of Cov 229e 3cl Protease With Epdtc
Length = 302
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 28 RGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEA 72
+GE+L +E+ ++ + + ++N EDAF LA E+ L A
Sbjct: 220 KGEKLFVEHYNEWAQANGFTAMNGEDAFSILAAKTGVCVERLLHA 264
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 18 VSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEK-KLEASNPP 76
++ + V E + A E + F ETSA NS NV+ AF L I + K +++ +
Sbjct: 130 LAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSS 189
Query: 77 KGGIHVKSSEPN 88
G +S PN
Sbjct: 190 ANGNANGASAPN 201
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAF 55
+VS E G A+ + KF+ETSA NV + F
Sbjct: 128 EVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAF 55
+V + +A E+ FMETSAK + NV++ F
Sbjct: 130 EVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 31 QLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTE 67
+ A E + F+ETSA NVE+AF AR I + E
Sbjct: 140 RFAQENELMFLETSALTGENVEEAFVQCARKILNKIE 176
>pdb|1P9S|A Chain A, Coronavirus Main Proteinase (3clpro) Structure: Basis For
Design Of Anti-Sars Drugs
pdb|1P9S|B Chain B, Coronavirus Main Proteinase (3clpro) Structure: Basis For
Design Of Anti-Sars Drugs
Length = 300
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 28 RGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEA 72
+GE+L +E+ ++ + + + N EDAF LA E+ L A
Sbjct: 220 KGEKLFVEHYNEWAQANGFTAXNGEDAFSILAAKTGVCVERLLHA 264
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 23 QVSRERGEQLAIEYG-IKFMETSAKNSINVEDAFFTLARDIKAQTEKKLE 71
QV+ E + +E G ++ETSAK+ NV AF R + A E++LE
Sbjct: 132 QVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLA-VEEQLE 180
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 18 VSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAF 55
++ + V + + A+E + F ETSA NS NV+ AF
Sbjct: 127 LAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAF 164
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 38 IKFMETSAKNSINVEDAF 55
+ F+ETSA +S NVE+AF
Sbjct: 142 LSFIETSALDSTNVEEAF 159
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAF 55
+V E LA + FMETSAK + NV++ F
Sbjct: 126 EVQSSEAEALARTWKCAFMETSAKLNHNVKELF 158
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
+V+ + A E + F+ETSA +VE+AF AR I
Sbjct: 133 EVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172
>pdb|3C5H|A Chain A, Crystal Structure Of The Ras Homolog Domain Of Human Grlf1
(P190rhogap)
Length = 255
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 38 IKFMETSAKNSINVEDAFFTLARDI 62
++ +ETSA++++NV+ AF TL + I
Sbjct: 229 LQVVETSARSNVNVDLAFSTLVQLI 253
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 38 IKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASN 74
+ F+ETSA + NVE AF L +I +KK N
Sbjct: 145 LAFIETSALEATNVELAFHQLLNEIYNVRQKKQATKN 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.127 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,665,630
Number of Sequences: 62578
Number of extensions: 80488
Number of successful extensions: 315
Number of sequences better than 100.0: 172
Number of HSP's better than 100.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 145
Number of HSP's gapped (non-prelim): 172
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)