BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17493
(101 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P35280|RAB8A_RAT Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2
Length = 207
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 66/85 (77%), Gaps = 3/85 (3%)
Query: 18 VSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPK 77
V+ QVS+ERGE+LA++YGIKFMETSAK +INVE+AFFTLARDIKA+ +KKLE N P+
Sbjct: 125 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEG-NSPQ 183
Query: 78 GGIH-VKSSEPNRKPPSWLSKCSIL 101
G H VK + +K S+ +CS+L
Sbjct: 184 GSSHGVKITVEQQKRTSFF-RCSLL 207
>sp|P55258|RAB8A_MOUSE Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2
Length = 207
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 66/85 (77%), Gaps = 3/85 (3%)
Query: 18 VSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPK 77
V+ QVS+ERGE+LA++YGIKFMETSAK +INVE+AFFTLARDIKA+ +KKLE N P+
Sbjct: 125 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEG-NSPQ 183
Query: 78 GGIH-VKSSEPNRKPPSWLSKCSIL 101
G H VK + +K S+ +CS+L
Sbjct: 184 GSSHGVKITVEQQKRTSFF-RCSLL 207
>sp|Q5R4A3|RAB8A_PONAB Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1
Length = 207
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 64/84 (76%), Gaps = 1/84 (1%)
Query: 18 VSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPK 77
V+ QVS+ERGE+LA++YGIKFMETSAK +INVE+AFFTLARDIKA+ +KKLE ++P
Sbjct: 125 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQG 184
Query: 78 GGIHVKSSEPNRKPPSWLSKCSIL 101
VK + P+++ S +C +L
Sbjct: 185 SNQGVKIT-PDQQKRSSFFRCVLL 207
>sp|Q4R5P1|RAB8A_MACFA Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2
SV=1
Length = 207
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 64/84 (76%), Gaps = 1/84 (1%)
Query: 18 VSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPK 77
V+ QVS+ERGE+LA++YGIKFMETSAK +INVE+AFFTLARDIKA+ +KKLE ++P
Sbjct: 125 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQG 184
Query: 78 GGIHVKSSEPNRKPPSWLSKCSIL 101
VK + P+++ S +C +L
Sbjct: 185 SNQGVKIT-PDQQKRSSFFRCVLL 207
>sp|P61006|RAB8A_HUMAN Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1
Length = 207
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 64/84 (76%), Gaps = 1/84 (1%)
Query: 18 VSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPK 77
V+ QVS+ERGE+LA++YGIKFMETSAK +INVE+AFFTLARDIKA+ +KKLE ++P
Sbjct: 125 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQG 184
Query: 78 GGIHVKSSEPNRKPPSWLSKCSIL 101
VK + P+++ S +C +L
Sbjct: 185 SNQGVKIT-PDQQKRSSFFRCVLL 207
>sp|P61007|RAB8A_CANFA Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1
Length = 207
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 64/84 (76%), Gaps = 1/84 (1%)
Query: 18 VSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPK 77
V+ QVS+ERGE+LA++YGIKFMETSAK +INVE+AFFTLARDIKA+ +KKLE ++P
Sbjct: 125 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQG 184
Query: 78 GGIHVKSSEPNRKPPSWLSKCSIL 101
VK + P+++ S +C +L
Sbjct: 185 SNQGVKIT-PDQQKRSSFFRCVLL 207
>sp|A4FV54|RAB8A_BOVIN Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1
Length = 207
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 64/84 (76%), Gaps = 1/84 (1%)
Query: 18 VSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPK 77
V+ QVS+ERGE+LA++YGIKFMETSAK +INVE+AF+TLARDIKA+ +KKLE ++P
Sbjct: 125 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFYTLARDIKAKMDKKLEGNSPQG 184
Query: 78 GGIHVKSSEPNRKPPSWLSKCSIL 101
VK + P+++ S +C +L
Sbjct: 185 SNQGVKIT-PDQQKRSSFFRCVLL 207
>sp|P70550|RAB8B_RAT Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1
Length = 207
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHV 82
QVS+ERGE+LAI+YGIKF+ETSAK+S NVE+AFFTLARDI + +K+ SN G V
Sbjct: 130 QVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPV 189
Query: 83 KSSEPNRKPPSWLSKCSIL 101
K +E K S+ +CS+L
Sbjct: 190 KITESRSKKTSFF-RCSLL 207
>sp|P61028|RAB8B_MOUSE Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1
Length = 207
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHV 82
QVS+ERGE+LAI+YGIKF+ETSAK+S NVE+AFFTLARDI + +K+ SN G V
Sbjct: 130 QVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPV 189
Query: 83 KSSEPNRKPPSWLSKCSIL 101
K +E K S+ +CS+L
Sbjct: 190 KITESRSKKTSFF-RCSLL 207
>sp|Q92930|RAB8B_HUMAN Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2
Length = 207
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHV 82
QVS+ERGE+LAI+YGIKF+ETSAK+S NVE+AFFTLARDI + +K+ SN G V
Sbjct: 130 QVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNSAGAGGPV 189
Query: 83 KSSEPNRKPPSWLSKCSIL 101
K +E K S+ +CS+L
Sbjct: 190 KITENRSKKTSFF-RCSLL 207
>sp|Q5F470|RAB8A_CHICK Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1
Length = 207
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHV 82
QVSRE+GE+LA +GIKFMETSAK +IN+E+AFFTLARDIKA+ +KKLE ++P V
Sbjct: 130 QVSREQGEKLAASFGIKFMETSAKANINIENAFFTLARDIKAKMDKKLEGNSPQGSNQGV 189
Query: 83 KSSEPNRKPPSWLSKCSIL 101
K + P+++ S +C +L
Sbjct: 190 KIT-PDQQKKSSFFRCVLL 207
>sp|Q5REC9|RAB8B_PONAB Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1
Length = 207
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHV 82
QVS+ERGE+LAI+YGIKF+ETSAK+S NVE+AFFTLARDI + +K+ SN G V
Sbjct: 130 QVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSAGAGGPV 189
Query: 83 KSSEPNRKPPSWLSKCSIL 101
K +E K S+ +C +L
Sbjct: 190 KITENRSKKTSFF-RCLLL 207
>sp|Q2HJI8|RAB8B_BOVIN Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1
Length = 207
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHV 82
QVS+ERGE+LAI+YGIKF+E SAK+S+NVE+AFFTLARDI + +K+ SN G V
Sbjct: 130 QVSKERGEKLAIDYGIKFLEASAKSSMNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPV 189
Query: 83 KSSEPNRKPPSWLSKCSIL 101
K +E K S+ +C +L
Sbjct: 190 KITENRSKKTSFF-RCLLL 207
>sp|P22128|RAB8_DIPOM Ras-related protein Rab-8 OS=Diplobatis ommata PE=2 SV=1
Length = 210
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/48 (72%), Positives = 43/48 (89%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKL 70
QVS+ERGE+LAI+YGIKF+ETSAK+SINVE+AF TLARDI + KK+
Sbjct: 130 QVSKERGEKLAIDYGIKFLETSAKSSINVEEAFITLARDIMTKLNKKM 177
>sp|P20791|RAB8B_DICDI Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B
PE=2 SV=1
Length = 203
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 43/67 (64%), Gaps = 6/67 (8%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHVK 83
V RG+ LA EYGIKF+ETSAKNS+NVE+AF LA+DIK ++ ++ N P H
Sbjct: 138 VDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIK---KRMIDTPNDPD---HTI 191
Query: 84 SSEPNRK 90
PN K
Sbjct: 192 CITPNNK 198
>sp|P20790|RAB8A_DICDI Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A
PE=3 SV=1
Length = 208
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 34/40 (85%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V RG+ LA EYGIKF+ETSAKNSINVE+AF +LA+DIK
Sbjct: 138 VDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIK 177
>sp|P17609|YPT2_SCHPO GTP-binding protein ypt2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt2 PE=3 SV=1
Length = 200
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 41/52 (78%), Gaps = 3/52 (5%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASN 74
QVS E+G+ LA E G+KF+E SAK ++NV++AFFTLAR+IK Q K++A N
Sbjct: 131 QVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQ---KIDAEN 179
>sp|Q9DD03|RAB13_MOUSE Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=1 SV=1
Length = 202
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHV 82
QV RE+ E+LA E+ I+F ETSAK+S+NV++AF +LARDI +T + +N +
Sbjct: 130 QVQREQAEKLAREHRIRFFETSAKSSVNVDEAFSSLARDILLKTGGRRSGTNSKPSSTGL 189
Query: 83 KSSEPNR 89
K+S+ +
Sbjct: 190 KTSDKKK 196
>sp|O93856|RAS_LACBI Ras-like protein OS=Laccaria bicolor PE=2 SV=1
Length = 209
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHVK 83
VS++ GE LA ++G KF+ETSAK+ INVE+AF+ L R+I+ + E SNP G
Sbjct: 131 VSKQEGESLARQFGCKFIETSAKSRINVENAFYDLVREIRRYNK---EMSNPSGFGARAP 187
Query: 84 SSEPNRKPPSWLSKCS 99
S+ + P + C
Sbjct: 188 DSKMDVSEPGESAGCC 203
>sp|Q5KTJ6|RAB13_MESAU Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2
SV=1
Length = 203
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 9/80 (11%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHV 82
+V +E+ ++LA E+GI+F ETSAK+S+NV++AF +LARDI L S + G H
Sbjct: 130 KVLKEQADKLAREHGIRFFETSAKSSMNVDEAFNSLARDI-------LLKSGGRRSGNHS 182
Query: 83 KSSEPNRKPPSW--LSKCSI 100
K S + KP +KCS+
Sbjct: 183 KPSSTDLKPSDKKNTNKCSL 202
>sp|Q39433|RB1BV_BETVU Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1
Length = 215
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 37/48 (77%), Gaps = 3/48 (6%)
Query: 28 RGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK---AQTEKKLEA 72
+G+ LA EYGIKF ETSAK ++NVE+ FF++ARDIK A ++ + EA
Sbjct: 143 KGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADSDTRQEA 190
>sp|Q12526|RAS_EMENI Ras-like protein OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=rasA PE=2 SV=2
Length = 212
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGG 79
VS + GE LA ++G KF+ETSAK+ INVE+AF+ L R+I+ + E SNP G
Sbjct: 131 VSEQEGESLARQFGCKFIETSAKSRINVENAFYDLVREIRRYNK---EMSNPSGSG 183
>sp|Q58DS5|RAB13_BOVIN Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1
Length = 203
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 14/71 (19%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHV 82
+V +E+ ++LA E+GI+F ETSAK+S+NV++AF +LARDI ++ GG +
Sbjct: 130 KVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKS-----------GGRRL 178
Query: 83 KSSEPNRKPPS 93
K+ N KPPS
Sbjct: 179 KN---NNKPPS 186
>sp|O24466|RAE1A_ARATH Ras-related protein RABE1a OS=Arabidopsis thaliana GN=RABE1A PE=1
SV=1
Length = 216
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 38/51 (74%), Gaps = 3/51 (5%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK---AQTEKKLE 71
V + +G+ LA EYG+KF ETSAK ++NVE+ FF++A+DIK A T+ + E
Sbjct: 139 VPKSKGQALADEYGMKFFETSAKTNLNVEEVFFSIAKDIKQRLADTDARAE 189
>sp|P28186|RAE1C_ARATH Ras-related protein RABE1c OS=Arabidopsis thaliana GN=RABE1C PE=1
SV=1
Length = 216
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 30/36 (83%)
Query: 28 RGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
+G+ LA EYGIKF ETSAK ++NVE+ FF++ RDIK
Sbjct: 143 KGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIK 178
>sp|P79737|RASN_DANRE GTPase NRas OS=Danio rerio GN=nras PE=2 SV=1
Length = 188
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 14 VPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEAS 73
V N V ++ ++LA YGI+F+ETSAK VEDAF+TL R+I+ KKL +
Sbjct: 114 VGNICDLARTVDTKQAQELARSYGIEFVETSAKTRQGVEDAFYTLVREIRHYRMKKLNSR 173
Query: 74 NPPKGG 79
K G
Sbjct: 174 EDRKQG 179
>sp|P87018|RAS_BOTFU Ras-like protein OS=Botryotinia fuckeliana GN=ras1 PE=3 SV=1
Length = 212
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 35/41 (85%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
QVS++ G+QLA ++G KF+ETSAK+ INV++AF+ + R+I+
Sbjct: 130 QVSKQEGQQLADDFGCKFIETSAKSRINVDNAFYDIVREIR 170
>sp|Q5ZIT5|RAB10_CHICK Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1
Length = 200
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHVK 83
V + +GEQ+A E+GI+F ETSAK +IN+E AF TLA DI +T K P + +
Sbjct: 132 VPKAKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVK----EPNSENVDIS 187
Query: 84 SSEPNRKPPSWLSKC 98
S W SKC
Sbjct: 188 SGGG---VTGWKSKC 199
>sp|Q5R5U1|RAB10_PONAB Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1
Length = 200
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHVK 83
V + +GEQ+A E+GI+F ETSAK +IN+E AF TLA DI +T K P + +
Sbjct: 132 VPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVK----EPNSENVDIS 187
Query: 84 SSEPNRKPPSWLSKC 98
S W SKC
Sbjct: 188 SGGG---VTGWKSKC 199
>sp|P61027|RAB10_MOUSE Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1
Length = 200
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHVK 83
V + +GEQ+A E+GI+F ETSAK +IN+E AF TLA DI +T K P + +
Sbjct: 132 VPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVK----EPNSENVDIS 187
Query: 84 SSEPNRKPPSWLSKC 98
S W SKC
Sbjct: 188 SGGG---VTGWKSKC 199
>sp|P61026|RAB10_HUMAN Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1
Length = 200
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHVK 83
V + +GEQ+A E+GI+F ETSAK +IN+E AF TLA DI +T K P + +
Sbjct: 132 VPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVK----EPNSENVDIS 187
Query: 84 SSEPNRKPPSWLSKC 98
S W SKC
Sbjct: 188 SGGG---VTGWKSKC 199
>sp|Q9ULW5|RAB26_HUMAN Ras-related protein Rab-26 OS=Homo sapiens GN=RAB26 PE=1 SV=3
Length = 256
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 41/58 (70%), Gaps = 3/58 (5%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIH 81
V RE GE+LA EYG+ FMETSAK +NV+ AF +A+++K ++ ++A + P+ +H
Sbjct: 187 VKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK---QRSMKAPSEPRFRLH 241
>sp|P35286|RAB13_RAT Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2
Length = 203
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 36/44 (81%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQT 66
+V RE+ E+LA E+ I+F ETSAK+S+NV++AF +LARDI +T
Sbjct: 130 KVQREQAERLAREHRIRFFETSAKSSVNVDEAFSSLARDILLKT 173
>sp|P51153|RAB13_HUMAN Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1
Length = 203
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI--KAQTEKKLEASNPP 76
+V +E+ ++LA E+GI+F ETSAK+S+NV++AF +LARDI K+ + + PP
Sbjct: 130 KVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGNGNKPP 185
>sp|P24409|RAB10_CANFA Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=1 SV=1
Length = 200
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHVK 83
V + +GEQ+A E+GI+F ETSAK +IN+E AF TLA DI +T K P + +
Sbjct: 132 VPKGKGEQIAREHGIRFFETSAKVNINIEKAFLTLAEDILRKTPVK----EPNSENVDIS 187
Query: 84 SSEPNRKPPSWLSKC 98
S W SKC
Sbjct: 188 SGGG---VTGWKSKC 199
>sp|P22278|RAS1_MUCCL Ras-like protein 1 OS=Mucor circinelloides f. lusitanicus GN=RAS1
PE=2 SV=1
Length = 203
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHV 82
QVS + G LA +G +F+ETSAK INV++AFF + RDI+ + K+ E + GI
Sbjct: 132 QVSSQEGRDLAKNFGCQFIETSAKQRINVDEAFFEVVRDIR-RYNKEQETRGHDQFGIQ- 189
Query: 83 KSSEPNRKPPSWLSKCSIL 101
P KC IL
Sbjct: 190 ------DAPDVASDKCCIL 202
>sp|P51156|RAB26_RAT Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2
Length = 257
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 41/58 (70%), Gaps = 3/58 (5%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIH 81
V RE GE+LA EYG+ FMETSAK+ +NV+ AF +A+++K ++ K A + P+ +H
Sbjct: 188 VKREDGEKLAKEYGLPFMETSAKSGLNVDLAFTAIAKELKQRSTK---APSEPRFRLH 242
>sp|Q96DA2|RB39B_HUMAN Ras-related protein Rab-39B OS=Homo sapiens GN=RAB39B PE=1 SV=1
Length = 213
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 33/45 (73%)
Query: 18 VSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
+ + QV+R E+LA YG+K++ETSA+++INVE AF L RDI
Sbjct: 127 LDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDI 171
>sp|Q8BHC1|RB39B_MOUSE Ras-related protein Rab-39B OS=Mus musculus GN=Rab39b PE=2 SV=1
Length = 213
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 33/45 (73%)
Query: 18 VSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
+ + QV+R E+LA YG+K++ETSA+++INVE AF L RDI
Sbjct: 127 LDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDI 171
>sp|Q17QU4|RB39B_BOVIN Ras-related protein Rab-39B OS=Bos taurus GN=RAB39B PE=2 SV=1
Length = 213
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 33/45 (73%)
Query: 18 VSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
+ + QV+R E+LA YG+K++ETSA+++INVE AF L RDI
Sbjct: 127 LDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDI 171
>sp|Q9SF91|RAE1E_ARATH Ras-related protein RABE1e OS=Arabidopsis thaliana GN=RABE1E PE=1
SV=1
Length = 218
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 28 RGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHVKSSEP 87
+G+ LA EYGIKF ETSAK + NVE F ++A+DIK + + + P GI + +
Sbjct: 143 KGQALADEYGIKFFETSAKTNQNVEQVFLSIAKDIKQRLTESDTKAEPQ--GIKITKQDA 200
Query: 88 NRKPPS 93
N+ S
Sbjct: 201 NKASSS 206
>sp|Q9LZD4|RAE1D_ARATH Ras-related protein RABE1d OS=Arabidopsis thaliana GN=RABE1D PE=1
SV=1
Length = 216
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 7/54 (12%)
Query: 28 RGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK---AQTEKKLEASNPPKG 78
+G+ LA EYGIKF ETSAK ++NVE+ F ++A+DIK +T+ K E P+G
Sbjct: 143 KGQALADEYGIKFFETSAKTNLNVENVFMSIAKDIKQRLTETDTKAE----PQG 192
>sp|P41924|RYL1_YARLI Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=RYL1 PE=3 SV=1
Length = 203
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHVK 83
VS E+G+ LA ++GI F+E S+K +INVE+ F+++A I+ T K + + GGI++
Sbjct: 134 VSTEQGQALADKFGIPFLEASSKTNINVEECFYSVATRIR-DTVAKTKGNESGSGGINIA 192
Query: 84 SSEPN 88
E N
Sbjct: 193 EGEEN 197
>sp|Q504M8|RAB26_MOUSE Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=1 SV=1
Length = 260
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 40/58 (68%), Gaps = 3/58 (5%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIH 81
V RE GE+LA EYG+ FMETSA+ +NV+ AF +A+++K ++ K A + P+ +H
Sbjct: 191 VKREDGEKLAKEYGLPFMETSARTGLNVDLAFTAIAKELKQRSAK---APSEPRFRLH 245
>sp|Q5RD87|RASN_PONAB GTPase NRas OS=Pongo abelii GN=NRAS PE=2 SV=1
Length = 189
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGG 79
V ++ +LA YGI F+ETSAK VEDAF+TL R+I+ KKL +S+ G
Sbjct: 125 VDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLNSSDDGTQG 180
>sp|Q2MJK3|RASN_PIG GTPase NRas OS=Sus scrofa GN=NRAS PE=2 SV=1
Length = 189
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGG 79
V ++ +LA YGI F+ETSAK VEDAF+TL R+I+ KKL +S+ G
Sbjct: 125 VDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLNSSDDGTQG 180
>sp|P01111|RASN_HUMAN GTPase NRas OS=Homo sapiens GN=NRAS PE=1 SV=1
Length = 189
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGG 79
V ++ +LA YGI F+ETSAK VEDAF+TL R+I+ KKL +S+ G
Sbjct: 125 VDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLNSSDDGTQG 180
>sp|Q95ME4|RASN_MONDO GTPase NRas OS=Monodelphis domestica GN=NRAS PE=2 SV=1
Length = 189
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGG 79
V ++ +LA YGI F+ETSAK VEDAF+TL R+I+ KKL +S+ G
Sbjct: 125 VDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLNSSDDGTQG 180
>sp|O42785|RASL_COLTR Ras-like protein OS=Colletotrichum trifolii GN=RAS PE=2 SV=1
Length = 214
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHV 82
+V+R+ GE LA +G KF+ETSAK+ INV+ AF+ + R+I+ + ++++ + GG
Sbjct: 130 EVTRQEGEALAKSFGCKFIETSAKSRINVDKAFYDIVREIR-RYNREMQGYSTGSGGASG 188
Query: 83 KSSEP-------NRKPPSWLSKCSIL 101
+ P + SKC I+
Sbjct: 189 INGPPKPMDVENGEQEAGCCSKCLIM 214
>sp|P08556|RASN_MOUSE GTPase NRas OS=Mus musculus GN=Nras PE=2 SV=1
Length = 189
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGG 79
V ++ +LA YGI F+ETSAK VEDAF+TL R+I+ KKL +S+ G
Sbjct: 125 VDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRLKKLNSSDDGTQG 180
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.127 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,277,779
Number of Sequences: 539616
Number of extensions: 1066939
Number of successful extensions: 3529
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 3054
Number of HSP's gapped (non-prelim): 526
length of query: 101
length of database: 191,569,459
effective HSP length: 70
effective length of query: 31
effective length of database: 153,796,339
effective search space: 4767686509
effective search space used: 4767686509
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)