Query psy17493
Match_columns 101
No_of_seqs 204 out of 1339
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 23:55:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17493.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17493hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.9 5.2E-22 1.8E-26 127.5 5.8 60 7-66 119-178 (216)
2 2bcg_Y Protein YP2, GTP-bindin 99.6 7E-15 2.4E-19 92.4 9.0 63 7-69 114-176 (206)
3 2bov_A RAla, RAS-related prote 99.6 1E-14 3.4E-19 91.3 8.0 61 6-66 119-179 (206)
4 2g3y_A GTP-binding protein GEM 99.5 4.9E-14 1.7E-18 89.9 7.3 59 6-64 145-203 (211)
5 1vg8_A RAS-related protein RAB 99.5 9E-14 3.1E-18 87.1 7.6 62 6-68 117-179 (207)
6 2cjw_A GTP-binding protein GEM 99.5 2.2E-13 7.6E-18 85.2 7.4 61 6-66 114-174 (192)
7 2nzj_A GTP-binding protein REM 99.5 3.7E-13 1.3E-17 82.0 8.1 60 6-65 111-170 (175)
8 2fu5_C RAS-related protein RAB 99.4 4.1E-13 1.4E-17 82.6 7.7 62 7-68 114-175 (183)
9 3cbq_A GTP-binding protein REM 99.4 5.1E-13 1.7E-17 83.7 7.7 59 6-64 130-188 (195)
10 3q72_A GTP-binding protein RAD 99.4 7.7E-13 2.6E-17 80.1 7.6 60 6-65 106-165 (166)
11 3q85_A GTP-binding protein REM 99.4 5.2E-13 1.8E-17 81.0 6.8 59 6-64 109-167 (169)
12 4dsu_A GTPase KRAS, isoform 2B 99.4 2.5E-12 8.4E-17 79.2 9.9 63 6-69 109-171 (189)
13 3ihw_A Centg3; RAS, centaurin, 99.4 1E-12 3.5E-17 81.6 7.8 60 6-65 119-181 (184)
14 2iwr_A Centaurin gamma 1; ANK 99.4 1.2E-12 4.2E-17 80.1 7.8 63 6-68 108-173 (178)
15 2a5j_A RAS-related protein RAB 99.4 1.3E-12 4.3E-17 81.2 7.6 61 6-66 126-186 (191)
16 3kkq_A RAS-related protein M-R 99.4 1.3E-12 4.5E-17 80.3 7.5 58 7-64 124-182 (183)
17 3dz8_A RAS-related protein RAB 99.4 8E-13 2.7E-17 82.1 6.6 61 6-66 128-188 (191)
18 3t5g_A GTP-binding protein RHE 99.4 5.1E-13 1.7E-17 82.1 5.2 60 6-65 111-170 (181)
19 3tkl_A RAS-related protein RAB 99.4 2E-12 6.9E-17 80.2 7.8 60 7-66 122-181 (196)
20 2fn4_A P23, RAS-related protei 99.4 1.3E-12 4.6E-17 79.8 6.1 61 6-66 114-174 (181)
21 2hup_A RAS-related protein RAB 99.4 1.7E-12 5.7E-17 81.6 6.6 60 7-66 135-195 (201)
22 2ew1_A RAS-related protein RAB 99.4 1.5E-12 5E-17 82.1 6.3 60 7-66 132-191 (201)
23 3cpj_B GTP-binding protein YPT 99.4 5.2E-13 1.8E-17 85.0 4.2 60 7-66 119-178 (223)
24 3c5c_A RAS-like protein 12; GD 99.4 6.3E-13 2.1E-17 82.6 4.4 58 6-63 127-185 (187)
25 1z0f_A RAB14, member RAS oncog 99.3 1.7E-12 5.8E-17 79.2 6.0 58 7-64 121-178 (179)
26 2f7s_A C25KG, RAS-related prot 99.3 2.9E-12 9.9E-17 81.0 7.2 63 6-68 141-203 (217)
27 2gf9_A RAS-related protein RAB 99.3 2.9E-12 1E-16 79.4 6.9 60 6-65 127-186 (189)
28 2o52_A RAS-related protein RAB 99.3 2.7E-12 9.3E-17 80.5 6.8 62 6-67 130-191 (200)
29 2gf0_A GTP-binding protein DI- 99.3 7.6E-13 2.6E-17 82.3 4.2 58 6-64 114-171 (199)
30 3bc1_A RAS-related protein RAB 99.3 4.9E-12 1.7E-16 78.0 7.7 62 6-67 127-188 (195)
31 3tw8_B RAS-related protein RAB 99.3 3.8E-12 1.3E-16 77.8 7.1 62 7-68 114-175 (181)
32 2bme_A RAB4A, RAS-related prot 99.3 2.5E-12 8.6E-17 79.2 6.2 61 7-67 116-176 (186)
33 1zbd_A Rabphilin-3A; G protein 99.3 4.3E-12 1.5E-16 79.3 7.3 63 6-68 113-175 (203)
34 2atv_A RERG, RAS-like estrogen 99.3 3.7E-12 1.3E-16 79.4 6.9 60 6-65 132-192 (196)
35 3oes_A GTPase rhebl1; small GT 99.3 1.4E-12 4.8E-17 81.7 4.7 60 6-65 129-188 (201)
36 2g6b_A RAS-related protein RAB 99.3 5.2E-12 1.8E-16 77.3 7.0 60 6-65 116-175 (180)
37 2oil_A CATX-8, RAS-related pro 99.3 4.4E-12 1.5E-16 78.7 6.7 60 7-66 131-190 (193)
38 1z08_A RAS-related protein RAB 99.3 2.4E-12 8.3E-17 78.0 5.3 57 7-63 112-168 (170)
39 2a9k_A RAS-related protein RAL 99.3 5.6E-12 1.9E-16 77.3 7.0 61 6-66 123-183 (187)
40 1u8z_A RAS-related protein RAL 99.3 3.9E-12 1.3E-16 76.7 6.1 58 6-63 109-166 (168)
41 2hxs_A RAB-26, RAS-related pro 99.3 2.8E-12 9.7E-17 78.3 5.4 56 9-64 118-173 (178)
42 3q3j_B RHO-related GTP-binding 99.3 1.5E-12 5.3E-17 82.6 4.3 61 6-66 131-205 (214)
43 2atx_A Small GTP binding prote 99.3 1.2E-11 4.1E-16 76.8 8.0 58 6-63 122-192 (194)
44 1g16_A RAS-related protein SEC 99.3 7.8E-12 2.7E-16 75.6 6.7 59 6-65 108-166 (170)
45 1c1y_A RAS-related protein RAP 99.3 8.2E-12 2.8E-16 75.3 6.7 57 6-62 108-165 (167)
46 2efe_B Small GTP-binding prote 99.3 5.4E-12 1.8E-16 77.3 5.7 58 7-64 118-175 (181)
47 3t1o_A Gliding protein MGLA; G 99.3 6.9E-12 2.4E-16 77.6 6.2 60 6-67 135-195 (198)
48 2q3h_A RAS homolog gene family 99.3 1E-11 3.6E-16 77.5 7.1 61 6-66 124-197 (201)
49 1kao_A RAP2A; GTP-binding prot 99.3 3.7E-12 1.3E-16 76.7 4.5 58 6-63 108-165 (167)
50 3reg_A RHO-like small GTPase; 99.3 1.1E-11 3.9E-16 77.0 6.6 59 7-65 128-189 (194)
51 2yc2_C IFT27, small RAB-relate 99.3 1E-11 3.4E-16 77.6 6.3 63 6-68 132-196 (208)
52 1z2a_A RAS-related protein RAB 99.3 5.5E-12 1.9E-16 76.2 4.8 59 6-64 109-167 (168)
53 2il1_A RAB12; G-protein, GDP, 99.3 6.2E-12 2.1E-16 78.3 5.1 58 7-64 132-190 (192)
54 3cph_A RAS-related protein SEC 99.3 2.4E-11 8.1E-16 76.3 7.6 60 7-67 126-185 (213)
55 2p5s_A RAS and EF-hand domain 99.2 9.4E-12 3.2E-16 77.8 5.4 58 6-63 133-196 (199)
56 1ky3_A GTP-binding protein YPT 99.2 2.3E-11 7.7E-16 74.3 6.9 61 6-66 118-180 (182)
57 1r2q_A RAS-related protein RAB 99.2 7.8E-12 2.7E-16 75.5 4.6 54 9-62 114-167 (170)
58 2j1l_A RHO-related GTP-binding 99.2 1.2E-11 4.2E-16 78.3 5.5 60 6-65 138-210 (214)
59 1z0j_A RAB-22, RAS-related pro 99.2 1.4E-11 4.9E-16 74.5 5.6 55 8-62 113-167 (170)
60 2j0v_A RAC-like GTP-binding pr 99.2 2.7E-12 9.4E-17 80.8 2.5 60 6-65 113-181 (212)
61 1z06_A RAS-related protein RAB 99.2 1.3E-11 4.4E-16 76.4 5.3 58 6-63 127-187 (189)
62 2gco_A H9, RHO-related GTP-bin 99.2 2.6E-11 8.8E-16 75.9 6.7 58 6-63 129-199 (201)
63 1wms_A RAB-9, RAB9, RAS-relate 99.2 3E-11 1E-15 73.7 6.7 58 6-64 116-174 (177)
64 4djt_A GTP-binding nuclear pro 99.2 1.2E-11 4.2E-16 78.1 5.0 60 7-66 118-177 (218)
65 2fg5_A RAB-22B, RAS-related pr 99.2 5.9E-12 2E-16 78.3 3.3 59 6-64 128-186 (192)
66 3clv_A RAB5 protein, putative; 99.2 6.3E-11 2.2E-15 73.3 8.0 58 7-65 148-205 (208)
67 3con_A GTPase NRAS; structural 99.2 6.8E-11 2.3E-15 73.0 7.9 59 6-65 126-184 (190)
68 1x3s_A RAS-related protein RAB 99.2 5.9E-11 2E-15 73.3 7.2 58 7-65 122-179 (195)
69 2ce2_X GTPase HRAS; signaling 99.2 9.3E-11 3.2E-15 70.3 7.8 57 6-63 108-164 (166)
70 2y8e_A RAB-protein 6, GH09086P 99.2 1.3E-11 4.4E-16 75.2 3.9 57 7-63 120-176 (179)
71 3bwd_D RAC-like GTP-binding pr 99.2 8E-12 2.7E-16 76.5 3.0 58 6-63 112-180 (182)
72 2erx_A GTP-binding protein DI- 99.2 3.3E-11 1.1E-15 72.9 5.6 57 6-62 109-165 (172)
73 1m7b_A RND3/RHOE small GTP-bin 99.2 1.2E-11 4.2E-16 76.3 3.6 59 6-64 111-183 (184)
74 1ek0_A Protein (GTP-binding pr 99.2 2.1E-11 7.1E-16 73.7 4.4 56 7-62 109-167 (170)
75 2fv8_A H6, RHO-related GTP-bin 99.2 6.7E-11 2.3E-15 74.4 6.7 59 6-64 129-200 (207)
76 1mh1_A RAC1; GTP-binding, GTPa 99.2 3.7E-11 1.3E-15 73.7 5.3 59 6-64 109-180 (186)
77 1gwn_A RHO-related GTP-binding 99.2 2.7E-11 9.1E-16 76.5 4.3 59 6-64 132-204 (205)
78 2qu8_A Putative nucleolar GTP- 99.1 1.5E-10 5.2E-15 73.8 7.3 61 6-66 142-207 (228)
79 2wji_A Ferrous iron transport 99.1 6.3E-12 2.2E-16 76.6 0.6 56 6-62 108-163 (165)
80 4gzl_A RAS-related C3 botulinu 99.1 3.4E-11 1.2E-15 75.7 2.1 57 6-62 134-203 (204)
81 3llu_A RAS-related GTP-binding 99.1 2.1E-11 7E-16 76.1 0.9 56 6-62 129-195 (196)
82 2cxx_A Probable GTP-binding pr 99.1 1.7E-10 5.9E-15 71.0 5.0 57 6-65 122-185 (190)
83 2wkq_A NPH1-1, RAS-related C3 99.1 1.4E-10 4.8E-15 77.2 4.8 59 6-64 259-330 (332)
84 3th5_A RAS-related C3 botulinu 98.6 1.9E-11 6.4E-16 76.6 0.0 57 6-62 134-203 (204)
85 3l0i_B RAS-related protein RAB 99.0 6.3E-12 2.1E-16 78.6 -2.4 57 7-63 139-195 (199)
86 3r7w_B Gtpase2, GTP-binding pr 99.0 5.6E-12 1.9E-16 85.3 -2.8 58 7-65 107-175 (331)
87 3c5h_A Glucocorticoid receptor 99.0 1.1E-10 3.9E-15 76.0 3.3 55 6-62 198-253 (255)
88 4bas_A ADP-ribosylation factor 99.0 1.9E-10 6.5E-15 71.3 3.5 61 6-66 127-191 (199)
89 2f9l_A RAB11B, member RAS onco 99.0 1.4E-09 4.6E-14 67.9 7.4 60 7-66 111-170 (199)
90 3gj0_A GTP-binding nuclear pro 99.0 2.8E-10 9.6E-15 72.1 2.9 58 6-65 119-176 (221)
91 1f6b_A SAR1; gtpases, N-termin 99.0 5.3E-10 1.8E-14 70.0 3.9 54 6-61 126-196 (198)
92 1r8s_A ADP-ribosylation factor 98.9 6.2E-11 2.1E-15 71.4 -0.7 57 6-64 101-162 (164)
93 1m2o_B GTP-binding protein SAR 98.9 5E-10 1.7E-14 69.6 3.3 54 6-61 124-189 (190)
94 2wjg_A FEOB, ferrous iron tran 98.9 1.8E-10 6.1E-15 70.9 1.1 58 6-64 112-169 (188)
95 1upt_A ARL1, ADP-ribosylation 98.9 1.1E-10 3.9E-15 70.6 0.1 59 6-64 108-169 (171)
96 1oix_A RAS-related protein RAB 98.9 2E-09 6.8E-14 67.0 5.2 56 7-62 135-190 (191)
97 2zej_A Dardarin, leucine-rich 98.9 1.3E-10 4.4E-15 71.8 -0.3 59 6-64 112-178 (184)
98 3pqc_A Probable GTP-binding pr 98.9 6.7E-10 2.3E-14 68.5 2.5 58 6-63 133-193 (195)
99 1u0l_A Probable GTPase ENGC; p 98.9 8.1E-10 2.8E-14 73.7 3.1 53 6-60 115-169 (301)
100 2fh5_B SR-beta, signal recogni 98.9 1.6E-10 5.5E-15 72.7 -0.9 25 37-61 183-213 (214)
101 4dcu_A GTP-binding protein ENG 98.9 3.1E-09 1.1E-13 74.3 5.4 60 6-65 306-370 (456)
102 1svi_A GTP-binding protein YSX 98.8 1.6E-09 5.4E-14 67.0 3.4 57 6-62 134-193 (195)
103 1fzq_A ADP-ribosylation factor 98.8 4.3E-10 1.5E-14 69.3 0.7 57 6-64 117-178 (181)
104 2x77_A ADP-ribosylation factor 98.8 3.6E-10 1.2E-14 69.8 0.3 57 6-64 123-184 (189)
105 2b6h_A ADP-ribosylation factor 98.8 1.5E-10 5.1E-15 72.1 -1.7 56 6-63 130-190 (192)
106 2h57_A ADP-ribosylation factor 98.8 4.7E-09 1.6E-13 64.8 5.0 56 6-63 126-186 (190)
107 2dyk_A GTP-binding protein; GT 98.8 6.4E-10 2.2E-14 66.6 0.9 52 6-62 108-160 (161)
108 1cip_A Protein (guanine nucleo 98.8 5.2E-10 1.8E-14 76.3 0.4 60 6-65 260-345 (353)
109 2hf9_A Probable hydrogenase ni 98.8 5.2E-09 1.8E-13 66.3 4.9 54 10-63 168-223 (226)
110 1zj6_A ADP-ribosylation factor 98.8 7.3E-09 2.5E-13 63.8 4.4 57 6-64 117-178 (187)
111 3dpu_A RAB family protein; roc 98.8 4.8E-09 1.6E-13 74.7 4.0 58 7-64 151-208 (535)
112 3a1s_A Iron(II) transport prot 98.8 2.1E-09 7.2E-14 70.3 1.9 56 6-62 110-165 (258)
113 3b1v_A Ferrous iron uptake tra 98.7 1.9E-09 6.4E-14 71.1 1.4 56 6-62 107-162 (272)
114 3ohm_A Guanine nucleotide-bind 98.7 6.7E-10 2.3E-14 75.1 -0.8 60 6-65 234-319 (327)
115 1ksh_A ARF-like protein 2; sma 98.7 1.6E-08 5.5E-13 62.0 5.0 58 6-65 119-181 (186)
116 1zd9_A ADP-ribosylation factor 98.7 7.5E-10 2.5E-14 68.5 -1.2 57 6-64 124-185 (188)
117 2h17_A ADP-ribosylation factor 98.7 7E-09 2.4E-13 63.6 3.2 54 6-61 122-180 (181)
118 1moz_A ARL1, ADP-ribosylation 98.7 3E-08 1E-12 60.5 5.9 58 6-65 119-181 (183)
119 2yv5_A YJEQ protein; hydrolase 98.7 6.3E-09 2.2E-13 69.4 2.4 54 6-59 110-164 (302)
120 2e87_A Hypothetical protein PH 98.7 2.5E-08 8.6E-13 67.8 5.2 58 6-65 280-337 (357)
121 2lkc_A Translation initiation 98.7 2.6E-08 8.7E-13 60.5 4.7 56 6-64 107-171 (178)
122 1zcb_A G alpha I/13; GTP-bindi 98.7 3.2E-09 1.1E-13 72.6 0.6 61 6-66 268-355 (362)
123 3o47_A ADP-ribosylation factor 98.7 2.5E-09 8.7E-14 72.1 -0.2 57 6-64 266-327 (329)
124 2xtz_A Guanine nucleotide-bind 98.6 5.6E-09 1.9E-13 71.2 0.9 61 6-66 250-347 (354)
125 3iev_A GTP-binding protein ERA 98.6 7E-08 2.4E-12 64.4 5.0 57 6-62 122-180 (308)
126 2gj8_A MNME, tRNA modification 98.6 3.3E-09 1.1E-13 65.0 -1.4 50 7-63 116-165 (172)
127 2hjg_A GTP-binding protein ENG 98.6 9E-08 3.1E-12 66.6 5.3 59 6-64 286-349 (436)
128 3r7w_A Gtpase1, GTP-binding pr 98.5 1.7E-08 5.9E-13 67.4 1.4 56 6-62 115-179 (307)
129 3qq5_A Small GTP-binding prote 98.5 1.2E-08 4.2E-13 71.0 0.6 57 6-64 140-196 (423)
130 2qnr_A Septin-2, protein NEDD5 98.5 1.3E-08 4.6E-13 67.9 0.2 57 7-64 156-214 (301)
131 2wsm_A Hydrogenase expression/ 98.5 7E-08 2.4E-12 60.8 3.4 59 6-64 154-214 (221)
132 4dhe_A Probable GTP-binding pr 98.5 7.1E-08 2.4E-12 60.8 3.3 60 6-65 144-212 (223)
133 1xzp_A Probable tRNA modificat 98.5 1.5E-07 5.1E-12 66.6 5.0 56 6-64 350-405 (482)
134 1azs_C GS-alpha; complex (lyas 98.5 2.8E-08 9.5E-13 68.9 0.8 62 6-67 284-388 (402)
135 3k53_A Ferrous iron transport 98.4 3.1E-08 1.1E-12 64.9 0.4 56 7-63 110-165 (271)
136 3lvq_E ARF-GAP with SH3 domain 98.4 1.2E-08 4E-13 71.9 -1.8 58 6-65 423-485 (497)
137 1mky_A Probable GTP-binding pr 98.4 2.2E-07 7.6E-12 64.7 4.4 59 6-64 292-355 (439)
138 3iby_A Ferrous iron transport 98.4 4.1E-08 1.4E-12 64.1 -0.2 55 6-61 110-164 (256)
139 1lnz_A SPO0B-associated GTP-bi 98.4 3E-07 1E-11 62.4 4.0 54 6-63 274-329 (342)
140 3h2y_A GTPase family protein; 98.3 1.5E-06 5.2E-11 59.4 6.9 54 6-60 96-156 (368)
141 3i8s_A Ferrous iron transport 98.3 3.5E-08 1.2E-12 64.9 -2.0 56 6-62 112-167 (274)
142 3gee_A MNME, tRNA modification 98.3 7.1E-07 2.4E-11 63.0 4.5 55 6-63 343-397 (476)
143 2qag_A Septin-2, protein NEDD5 98.3 6.9E-08 2.4E-12 65.9 -0.8 59 6-65 174-234 (361)
144 1s0u_A EIF-2-gamma, translatio 98.2 1.1E-06 3.7E-11 60.7 4.2 55 8-62 137-196 (408)
145 4fid_A G protein alpha subunit 98.2 1.8E-07 6E-12 63.6 -0.5 59 6-64 228-328 (340)
146 1wb1_A Translation elongation 98.1 4.6E-06 1.6E-10 58.9 4.8 58 6-63 125-188 (482)
147 2qag_C Septin-7; cell cycle, c 98.1 4.1E-07 1.4E-11 63.3 -0.6 57 6-62 167-225 (418)
148 3geh_A MNME, tRNA modification 98.0 1.3E-06 4.6E-11 61.4 1.9 53 7-63 331-383 (462)
149 3ec1_A YQEH GTPase; atnos1, at 98.0 1.1E-05 3.6E-10 55.2 6.3 55 6-61 98-159 (369)
150 1ega_A Protein (GTP-binding pr 98.0 2.8E-06 9.7E-11 56.5 3.1 57 6-62 116-173 (301)
151 3cb4_D GTP-binding protein LEP 98.0 1E-05 3.4E-10 58.7 5.7 56 6-63 123-181 (599)
152 1mky_A Probable GTP-binding pr 98.0 3.9E-06 1.3E-10 58.4 3.0 55 6-64 110-166 (439)
153 1nrj_B SR-beta, signal recogni 97.9 1.1E-06 3.9E-11 55.0 -0.1 46 6-51 120-171 (218)
154 1udx_A The GTP-binding protein 97.9 1.1E-05 3.9E-10 56.1 4.7 57 6-64 269-325 (416)
155 2ywe_A GTP-binding protein LEP 97.9 1.3E-05 4.3E-10 58.2 4.8 56 6-63 125-183 (600)
156 1kk1_A EIF2gamma; initiation o 97.9 4.1E-06 1.4E-10 57.8 1.9 55 8-62 139-198 (410)
157 3sjy_A Translation initiation 97.9 2.4E-05 8.1E-10 53.9 5.3 55 8-62 131-190 (403)
158 1wf3_A GTP-binding protein; GT 97.8 3.1E-06 1.1E-10 56.4 0.8 53 6-62 117-171 (301)
159 3p32_A Probable GTPase RV1496/ 97.7 1.7E-05 5.9E-10 53.8 3.1 57 7-64 218-284 (355)
160 2elf_A Protein translation elo 97.7 2E-05 6.7E-10 54.0 2.5 58 6-64 111-180 (370)
161 1yrb_A ATP(GTP)binding protein 97.6 4.9E-05 1.7E-09 48.9 4.0 30 34-63 225-256 (262)
162 2hjg_A GTP-binding protein ENG 97.6 1E-05 3.5E-10 56.3 0.6 53 6-63 111-164 (436)
163 3p26_A Elongation factor 1 alp 97.6 1.8E-05 6.2E-10 55.7 1.9 46 9-54 174-228 (483)
164 2qtf_A Protein HFLX, GTP-bindi 97.6 7.3E-05 2.5E-09 51.1 4.8 58 7-65 293-355 (364)
165 2aka_B Dynamin-1; fusion prote 97.6 5E-06 1.7E-10 54.6 -1.4 55 6-60 192-249 (299)
166 1zun_B Sulfate adenylate trans 97.5 2.1E-05 7.2E-10 54.7 0.7 49 9-57 160-217 (434)
167 1puj_A YLQF, conserved hypothe 97.4 0.00015 5E-09 47.9 3.9 54 6-64 50-106 (282)
168 1pui_A ENGB, probable GTP-bind 97.4 9.8E-05 3.3E-09 45.8 2.8 57 6-62 137-197 (210)
169 2dy1_A Elongation factor G; tr 97.4 0.00019 6.6E-09 52.5 4.7 27 38-64 248-274 (665)
170 3izy_P Translation initiation 97.4 2.9E-05 1E-09 55.6 0.1 56 6-62 104-166 (537)
171 1jny_A EF-1-alpha, elongation 97.3 3.9E-05 1.3E-09 53.4 0.6 49 8-56 146-205 (435)
172 1d2e_A Elongation factor TU (E 97.3 4.3E-05 1.5E-09 52.6 0.8 53 10-62 123-193 (397)
173 1zo1_I IF2, translation initia 97.3 1.2E-05 4.1E-10 57.1 -2.6 55 6-60 103-163 (501)
174 3tr5_A RF-3, peptide chain rel 97.3 0.00052 1.8E-08 49.1 5.6 25 39-63 252-276 (528)
175 3j2k_7 ERF3, eukaryotic polype 97.2 0.00024 8E-09 49.6 3.7 51 6-56 154-217 (439)
176 2xtp_A GTPase IMAP family memb 97.2 5E-05 1.7E-09 49.0 0.2 55 9-64 141-208 (260)
177 3izq_1 HBS1P, elongation facto 97.2 0.00011 3.6E-09 53.4 1.9 47 9-55 308-363 (611)
178 3t5d_A Septin-7; GTP-binding p 97.2 2.4E-05 8.1E-10 51.2 -1.4 56 6-61 144-201 (274)
179 1r5b_A Eukaryotic peptide chai 97.2 6E-05 2E-09 53.0 0.1 48 9-56 184-244 (467)
180 2c78_A Elongation factor TU-A; 97.1 7.4E-05 2.5E-09 51.5 0.2 42 9-50 131-180 (405)
181 3t34_A Dynamin-related protein 97.1 4.6E-05 1.6E-09 51.7 -1.0 57 6-62 203-259 (360)
182 3avx_A Elongation factor TS, e 97.1 0.00042 1.5E-08 53.9 3.8 54 9-62 415-484 (1289)
183 1g7s_A Translation initiation 97.0 0.0027 9.2E-08 46.1 7.4 25 39-63 193-217 (594)
184 2p67_A LAO/AO transport system 97.0 0.0027 9.3E-08 42.8 6.7 57 7-63 195-260 (341)
185 3lxx_A GTPase IMAP family memb 96.9 0.0012 4.1E-08 42.0 4.1 57 8-64 147-214 (239)
186 1f60_A Elongation factor EEF1A 96.9 0.00032 1.1E-08 49.2 1.4 47 9-55 148-203 (458)
187 4dcu_A GTP-binding protein ENG 96.9 0.00028 9.5E-09 49.3 1.1 52 6-62 131-183 (456)
188 2www_A Methylmalonic aciduria 96.7 0.0051 1.8E-07 41.6 6.5 54 8-62 214-277 (349)
189 2qm8_A GTPase/ATPase; G protei 96.7 0.0036 1.2E-07 42.2 5.4 53 10-62 197-259 (337)
190 3cnl_A YLQF, putative uncharac 96.6 0.001 3.4E-08 43.5 2.1 52 6-60 46-97 (262)
191 3mca_A HBS1, elongation factor 96.6 0.00056 1.9E-08 49.5 1.0 44 9-52 318-371 (592)
192 2x2e_A Dynamin-1; nitration, h 96.3 2.8E-05 9.6E-10 52.7 -6.6 55 6-60 197-254 (353)
193 2rcn_A Probable GTPase ENGC; Y 96.0 0.0034 1.2E-07 42.9 2.4 51 6-58 160-213 (358)
194 2j69_A Bacterial dynamin-like 96.0 0.0026 9E-08 46.8 1.8 27 38-64 285-325 (695)
195 1jwy_B Dynamin A GTPase domain 95.9 0.0087 3E-07 39.3 4.0 58 6-63 198-261 (315)
196 1t9h_A YLOQ, probable GTPase E 95.6 0.00067 2.3E-08 45.4 -2.2 52 6-58 117-171 (307)
197 3lxw_A GTPase IMAP family memb 94.9 0.02 6.7E-07 36.8 3.1 58 7-64 140-208 (247)
198 2dby_A GTP-binding protein; GD 94.9 0.0066 2.3E-07 41.6 0.9 55 5-59 200-257 (368)
199 3l82_B F-box only protein 4; T 93.1 0.1 3.5E-06 33.5 3.6 56 5-62 161-221 (227)
200 3l2o_B F-box only protein 4; s 92.4 0.23 7.9E-06 33.3 4.7 56 5-62 246-306 (312)
201 1dar_A EF-G, elongation factor 91.1 0.33 1.1E-05 35.8 4.8 26 38-63 256-281 (691)
202 1wxq_A GTP-binding protein; st 89.7 0.025 8.5E-07 39.0 -2.0 45 7-56 215-262 (397)
203 2rdo_7 EF-G, elongation factor 88.9 1.2 4.1E-05 32.9 6.3 27 38-64 262-288 (704)
204 3zvr_A Dynamin-1; hydrolase, D 88.8 0.082 2.8E-06 39.6 0.0 53 6-60 217-274 (772)
205 2h5e_A Peptide chain release f 87.7 0.17 5.7E-06 36.2 1.1 47 6-54 134-185 (529)
206 2xex_A Elongation factor G; GT 84.7 2.8 9.5E-05 31.0 6.2 27 38-64 254-280 (693)
207 1jal_A YCHF protein; nucleotid 84.2 1 3.5E-05 30.8 3.5 42 6-47 199-240 (363)
208 2ged_A SR-beta, signal recogni 74.2 2.6 8.9E-05 25.0 2.8 19 6-24 156-174 (193)
209 2lju_A Putative oxidoreductase 70.0 7 0.00024 22.1 3.7 23 24-46 67-89 (108)
210 2jya_A AGR_C_3324P, uncharacte 68.7 7 0.00024 22.0 3.5 24 24-47 59-82 (106)
211 2h5e_A Peptide chain release f 62.2 4.2 0.00015 29.0 2.2 26 38-63 252-277 (529)
212 1tif_A IF3-N, translation init 54.3 12 0.00042 19.8 2.6 27 22-48 27-53 (78)
213 3tnt_A SARS coronavirus main p 45.2 14 0.00047 24.6 2.3 44 20-63 221-273 (306)
214 1h65_A Chloroplast outer envel 42.6 14 0.00049 23.4 2.1 21 8-28 156-176 (270)
215 3def_A T7I23.11 protein; chlor 42.1 21 0.00072 22.5 2.8 21 8-28 153-173 (262)
216 2j37_W Signal recognition part 41.0 8.5 0.00029 27.4 0.9 48 10-61 244-310 (504)
217 2jry_A R11.6, I-superfamily co 38.2 8.6 0.00029 18.2 0.4 10 91-100 14-23 (46)
218 1ko7_A HPR kinase/phosphatase; 37.0 40 0.0014 22.5 3.6 43 10-58 83-125 (314)
219 3vqt_A RF-3, peptide chain rel 35.1 22 0.00074 25.5 2.2 26 38-63 269-294 (548)
220 1se9_A Ubiquitin family; ubiqu 33.8 8.7 0.0003 22.2 0.0 9 92-101 118-126 (126)
221 3u02_A Putative transcription- 32.3 30 0.001 22.4 2.4 36 22-59 116-151 (252)
222 1ni3_A YCHF GTPase, YCHF GTP-b 31.9 71 0.0024 21.9 4.3 42 6-47 224-269 (392)
223 3j25_A Tetracycline resistance 28.6 53 0.0018 24.0 3.3 26 38-63 213-238 (638)
224 4mt2_A Metallothionein isoform 26.3 21 0.00073 17.8 0.7 8 92-99 31-38 (62)
225 4a9a_A Ribosome-interacting GT 26.1 1.2E+02 0.0042 20.6 4.6 46 8-60 251-296 (376)
226 3pg5_A Uncharacterized protein 22.8 45 0.0015 22.3 2.0 36 31-66 305-349 (361)
227 2yvq_A Carbamoyl-phosphate syn 21.7 60 0.002 18.7 2.2 38 5-42 93-130 (143)
228 4b2v_A S64; toxin, ICK; NMR {S 20.8 56 0.0019 13.6 1.3 10 91-100 16-25 (32)
229 1dl0_A J-atracotoxin-HV1C; neu 20.8 26 0.00088 15.3 0.3 7 93-99 11-17 (37)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.85 E-value=5.2e-22 Score=127.46 Aligned_cols=60 Identities=30% Similarity=0.314 Sum_probs=52.7
Q ss_pred CCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy17493 7 TKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQT 66 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~~ 66 (101)
..+.|||||+||.+.|.|+.+++.+||+++++.|||||||+|.||+++|..+++.+....
T Consensus 119 ~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~~ 178 (216)
T 4dkx_A 119 VIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGME 178 (216)
T ss_dssp SEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC----
T ss_pred CeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhhh
Confidence 345678999999999999999999999999999999999999999999999999887543
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.60 E-value=7e-15 Score=92.42 Aligned_cols=63 Identities=30% Similarity=0.351 Sum_probs=55.8
Q ss_pred CCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHHHhhh
Q psy17493 7 TKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKK 69 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~~~~~ 69 (101)
..+.||+||+|+.+.+.+..+++..++..++++||++||++|.||+++|..+++.+.+.....
T Consensus 114 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~~ 176 (206)
T 2bcg_Y 114 VLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQ 176 (206)
T ss_dssp CEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHCCHH
T ss_pred CCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 345688999999888889999999999999999999999999999999999999988765443
No 3
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.57 E-value=1e-14 Score=91.31 Aligned_cols=61 Identities=31% Similarity=0.442 Sum_probs=55.2
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQT 66 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~~ 66 (101)
+.++.+|+||+|+.+.+.++.+++..+++.++++||++||++|.||+++|..+++.+....
T Consensus 119 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 179 (206)
T 2bov_A 119 NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 179 (206)
T ss_dssp CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHcc
Confidence 4566788999999887889999999999999999999999999999999999999988754
No 4
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.51 E-value=4.9e-14 Score=89.92 Aligned_cols=59 Identities=24% Similarity=0.309 Sum_probs=53.4
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
+.++.||+||+||.+.+.++.+++..++..++++|||||||+|.||+++|..+++.+..
T Consensus 145 ~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 145 DIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRL 203 (211)
T ss_dssp TSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 45567889999998778899999999999999999999999999999999999998854
No 5
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.49 E-value=9e-14 Score=87.09 Aligned_cols=62 Identities=32% Similarity=0.345 Sum_probs=53.5
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHH-HhCCeEEEeccCCCCCHHHHHHHHHHHHHHHHhh
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAI-EYGIKFMETSAKNSINVEDAFFTLARDIKAQTEK 68 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~-~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~~~~ 68 (101)
+.++.+|+||+|+. .+.+..+++..++. ..+++||++||++|.||+++|..+++.+.+....
T Consensus 117 ~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 179 (207)
T 1vg8_A 117 NFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE 179 (207)
T ss_dssp GSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhccc
Confidence 45677889999997 57788899999998 6678999999999999999999999999876543
No 6
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.46 E-value=2.2e-13 Score=85.19 Aligned_cols=61 Identities=23% Similarity=0.304 Sum_probs=54.2
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQT 66 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~~ 66 (101)
+..+.||+||+|+...+.+..+++..++..++++|||||||+|.||+++|..+++.+....
T Consensus 114 ~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 114 DIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRR 174 (192)
T ss_dssp CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHHhhc
Confidence 4556788999999877889999999999999999999999999999999999999886543
No 7
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.45 E-value=3.7e-13 Score=81.99 Aligned_cols=60 Identities=25% Similarity=0.319 Sum_probs=54.0
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~ 65 (101)
+.++.+|+||+|+.+.+.++.+++..++..++++||++||++|.||+++|..+++.+...
T Consensus 111 ~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 111 HVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLR 170 (175)
T ss_dssp -CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 456678899999988889999999999999999999999999999999999999988754
No 8
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.44 E-value=4.1e-13 Score=82.62 Aligned_cols=62 Identities=60% Similarity=0.822 Sum_probs=50.8
Q ss_pred CCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHHHhh
Q psy17493 7 TKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEK 68 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~~~~ 68 (101)
.++.||+||+|+.+.+.++.+++..+++.++++||++||++|.||+++|..+++.+.+....
T Consensus 114 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~~ 175 (183)
T 2fu5_C 114 VEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 175 (183)
T ss_dssp CEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 45678899999988889999999999999999999999999999999999999998876543
No 9
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.43 E-value=5.1e-13 Score=83.72 Aligned_cols=59 Identities=25% Similarity=0.228 Sum_probs=53.5
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
+..+.||+||+|+.+.+.++.+++..+++.++++|||+||++|.||+++|..+++.+..
T Consensus 130 ~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 130 DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp CCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred CCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 34566889999998888999999999999999999999999999999999999988764
No 10
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.42 E-value=7.7e-13 Score=80.05 Aligned_cols=60 Identities=25% Similarity=0.306 Sum_probs=54.3
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~ 65 (101)
+.++.+|+||+|+.+.+.++.+++..++..++++||++||++|.||+++|..+++.+.+.
T Consensus 106 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 106 DVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence 345678899999998899999999999999999999999999999999999999887653
No 11
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.41 E-value=5.2e-13 Score=81.04 Aligned_cols=59 Identities=25% Similarity=0.228 Sum_probs=53.9
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
+.++.+|+||+|+.+.+.++.+++..+++.++++|+++||++|.||+++|..+++.+..
T Consensus 109 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 109 DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHh
Confidence 45667889999998888999999999999999999999999999999999999988764
No 12
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.41 E-value=2.5e-12 Score=79.19 Aligned_cols=63 Identities=35% Similarity=0.517 Sum_probs=54.8
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHHHhhh
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKK 69 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~~~~~ 69 (101)
+.++.+|+||+|+. .+.+..+++..+++.++++||++||++|.||+++|..+++.+.......
T Consensus 109 ~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~ 171 (189)
T 4dsu_A 109 DVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKM 171 (189)
T ss_dssp CCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhhhhc
Confidence 35567889999997 4778899999999999999999999999999999999999988765443
No 13
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.41 E-value=1e-12 Score=81.58 Aligned_cols=60 Identities=18% Similarity=0.302 Sum_probs=53.5
Q ss_pred cCCCcEEeecCCC--CCCCCCCHHHHHHHHHHhC-CeEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFV--SSMPQVSRERGEQLAIEYG-IKFMETSAKNSINVEDAFFTLARDIKAQ 65 (101)
Q Consensus 6 ~~~~~lv~nk~Dl--~~~~~v~~~~~~~~a~~~~-~~~~etSAk~~~~V~~~F~~~~~~i~~~ 65 (101)
+..+.||+||+|+ ...+.++.+++..+++.++ +.||++||++|.||+++|..+++.+.+.
T Consensus 119 ~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 119 EVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVAL 181 (184)
T ss_dssp GSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 3456788999999 4578899999999999997 8999999999999999999999988765
No 14
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.40 E-value=1.2e-12 Score=80.13 Aligned_cols=63 Identities=19% Similarity=0.271 Sum_probs=54.2
Q ss_pred cCCCcEEeecCCC--CCCCCCCHHHHHHHHHHh-CCeEEEeccCCCCCHHHHHHHHHHHHHHHHhh
Q psy17493 6 NTKSKYIEVPNFV--SSMPQVSRERGEQLAIEY-GIKFMETSAKNSINVEDAFFTLARDIKAQTEK 68 (101)
Q Consensus 6 ~~~~~lv~nk~Dl--~~~~~v~~~~~~~~a~~~-~~~~~etSAk~~~~V~~~F~~~~~~i~~~~~~ 68 (101)
+.++.||+||+|+ ...+.++.+++..++..+ +++||++||++|.||+++|..+++.+++....
T Consensus 108 ~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~ 173 (178)
T 2iwr_A 108 GLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQ 173 (178)
T ss_dssp CCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHHHhh
Confidence 3456788999999 456889999999999987 68999999999999999999999998876443
No 15
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.39 E-value=1.3e-12 Score=81.25 Aligned_cols=61 Identities=41% Similarity=0.489 Sum_probs=55.0
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQT 66 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~~ 66 (101)
+..+.+|+||+|+.+.+.++.+++..+++.+++.||++||++|.||+++|..+++.+.+..
T Consensus 126 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 126 NMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 186 (191)
T ss_dssp TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 3456788999999877889999999999999999999999999999999999999998754
No 16
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.39 E-value=1.3e-12 Score=80.31 Aligned_cols=58 Identities=29% Similarity=0.493 Sum_probs=53.3
Q ss_pred CCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccC-CCCCHHHHHHHHHHHHHH
Q psy17493 7 TKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAK-NSINVEDAFFTLARDIKA 64 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk-~~~~V~~~F~~~~~~i~~ 64 (101)
..+.+|+||+|+.+.+.++.+++..+++.++++||++||+ +|.||+++|..+++.+.+
T Consensus 124 ~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 124 FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp CCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 4567889999998889999999999999999999999999 999999999999988764
No 17
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.39 E-value=8e-13 Score=82.14 Aligned_cols=61 Identities=30% Similarity=0.364 Sum_probs=55.1
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQT 66 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~~ 66 (101)
+..+.||+||+|+.+.+.+..+++..+++.++++||++||++|.||+++|..+++.+.+..
T Consensus 128 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 128 NAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKM 188 (191)
T ss_dssp TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 3456788999999888899999999999999999999999999999999999999887653
No 18
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.38 E-value=5.1e-13 Score=82.06 Aligned_cols=60 Identities=20% Similarity=0.232 Sum_probs=54.3
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~ 65 (101)
+.++.+|+||+|+.+.+.++.+++..+++.++++||++||++|.||+++|..+++.+...
T Consensus 111 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 111 QIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKM 170 (181)
T ss_dssp -CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 355678899999988899999999999999999999999999999999999999988754
No 19
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.38 E-value=2e-12 Score=80.18 Aligned_cols=60 Identities=32% Similarity=0.424 Sum_probs=55.0
Q ss_pred CCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy17493 7 TKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQT 66 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~~ 66 (101)
.++.||+||+|+.+.+.+..+++..++..++++||++||++|.||+++|..+++.+.+..
T Consensus 122 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~ 181 (196)
T 3tkl_A 122 VNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181 (196)
T ss_dssp CEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 456778999999988999999999999999999999999999999999999999988754
No 20
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.36 E-value=1.3e-12 Score=79.79 Aligned_cols=61 Identities=23% Similarity=0.305 Sum_probs=54.8
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQT 66 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~~ 66 (101)
+.++.+|+||+|+.+.+.++.+++..++..+++.||++||++|.||+++|..+++.+.+..
T Consensus 114 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 114 DFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 174 (181)
T ss_dssp CCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 3456788999999887889999999999999999999999999999999999999887653
No 21
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.36 E-value=1.7e-12 Score=81.56 Aligned_cols=60 Identities=33% Similarity=0.385 Sum_probs=54.0
Q ss_pred CCCcEEeecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy17493 7 TKSKYIEVPNFVSSMPQVSRERGEQLAIEYGI-KFMETSAKNSINVEDAFFTLARDIKAQT 66 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~-~~~etSAk~~~~V~~~F~~~~~~i~~~~ 66 (101)
..+.||+||+|+.+.+.++.+++..+++.+++ .||++||++|.||+++|..+++.+.+..
T Consensus 135 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 135 IVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRH 195 (201)
T ss_dssp CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 44577899999988788999999999999999 9999999999999999999999887653
No 22
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.36 E-value=1.5e-12 Score=82.14 Aligned_cols=60 Identities=27% Similarity=0.328 Sum_probs=54.1
Q ss_pred CCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy17493 7 TKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQT 66 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~~ 66 (101)
..+.+|+||+|+.+.+.++.+++..++...+++||++||++|.||+++|..+++.+.+..
T Consensus 132 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~ 191 (201)
T 2ew1_A 132 VITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEA 191 (201)
T ss_dssp CEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 345678999999877889999999999999999999999999999999999999988754
No 23
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.35 E-value=5.2e-13 Score=85.04 Aligned_cols=60 Identities=30% Similarity=0.297 Sum_probs=52.7
Q ss_pred CCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy17493 7 TKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQT 66 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~~ 66 (101)
..+.||+||+|+...+.++.+++..+++.++++||++||++|.||+++|..+++.+.+..
T Consensus 119 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 178 (223)
T 3cpj_B 119 VAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKV 178 (223)
T ss_dssp CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTCC
T ss_pred CeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 446778999999877889999999999999999999999999999999999999887543
No 24
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.35 E-value=6.3e-13 Score=82.61 Aligned_cols=58 Identities=22% Similarity=0.297 Sum_probs=53.1
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEecc-CCCCCHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSA-KNSINVEDAFFTLARDIK 63 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSA-k~~~~V~~~F~~~~~~i~ 63 (101)
+..+.||+||+|+.+.+.++.+++.++++.+++.||++|| ++|.||+++|..+++.+.
T Consensus 127 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 127 SIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp CCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHh
Confidence 4567788999999888899999999999999999999999 899999999999998775
No 25
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.35 E-value=1.7e-12 Score=79.21 Aligned_cols=58 Identities=36% Similarity=0.405 Sum_probs=51.9
Q ss_pred CCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 7 TKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
.++.+|+||+|+.+.+.++.+++.++++.++++||++||++|.||+++|..+++.+.+
T Consensus 121 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 121 TVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 4467889999998778899999999999999999999999999999999999987753
No 26
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.34 E-value=2.9e-12 Score=80.95 Aligned_cols=63 Identities=32% Similarity=0.345 Sum_probs=56.0
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHHHhh
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEK 68 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~~~~ 68 (101)
+.++.||+||+|+.+.+.++.+++..+++.++++||++||++|.||+++|..+++.+.+....
T Consensus 141 ~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~ 203 (217)
T 2f7s_A 141 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQ 203 (217)
T ss_dssp CCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHHHhhc
Confidence 345678899999988788999999999999999999999999999999999999998876543
No 27
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.34 E-value=2.9e-12 Score=79.37 Aligned_cols=60 Identities=30% Similarity=0.365 Sum_probs=54.4
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~ 65 (101)
+.++.+|+||+|+.+.+.+..+++..+++.++++||++||++|.||+++|..+++.+.+.
T Consensus 127 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 127 NAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEK 186 (189)
T ss_dssp TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 345678899999988788999999999999999999999999999999999999988764
No 28
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.34 E-value=2.7e-12 Score=80.47 Aligned_cols=62 Identities=27% Similarity=0.274 Sum_probs=55.3
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTE 67 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~~~ 67 (101)
+..+.+|+||+|+...+.++.+++..+++.+++.||++||++|.||+++|..+++.+.+...
T Consensus 130 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~ 191 (200)
T 2o52_A 130 NIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKID 191 (200)
T ss_dssp TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 34567889999998778899999999999999999999999999999999999999887643
No 29
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.34 E-value=7.6e-13 Score=82.28 Aligned_cols=58 Identities=24% Similarity=0.226 Sum_probs=51.0
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
+.++.+|+||+|+.. +.+..+++..++..+++.||++||++|.||+++|..+++.+.+
T Consensus 114 ~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 114 DIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp GSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred CCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 456788899999975 6788999999999999999999999999999999999876643
No 30
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.34 E-value=4.9e-12 Score=77.98 Aligned_cols=62 Identities=29% Similarity=0.315 Sum_probs=55.6
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTE 67 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~~~ 67 (101)
+.++.+|+||+|+.+.+.+..+++..++..++++||++||++|.||+++|..+++.+.+...
T Consensus 127 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 188 (195)
T 3bc1_A 127 NPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRME 188 (195)
T ss_dssp SCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 45567889999998778899999999999999999999999999999999999999887643
No 31
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.34 E-value=3.8e-12 Score=77.75 Aligned_cols=62 Identities=24% Similarity=0.257 Sum_probs=55.6
Q ss_pred CCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHHHhh
Q psy17493 7 TKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEK 68 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~~~~ 68 (101)
.++.+|+||+|+.+.+.+..+++..++..++++||++||++|.||+++|..+.+.+.+....
T Consensus 114 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~ 175 (181)
T 3tw8_B 114 VCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKD 175 (181)
T ss_dssp SEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhhh
Confidence 44577899999988888999999999999999999999999999999999999988876544
No 32
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.33 E-value=2.5e-12 Score=79.15 Aligned_cols=61 Identities=28% Similarity=0.249 Sum_probs=54.9
Q ss_pred CCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q psy17493 7 TKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTE 67 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~~~ 67 (101)
.++.+|+||+|+...+.++.+++..++..++++||++||++|.||+++|..+++.+.+...
T Consensus 116 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 176 (186)
T 2bme_A 116 IVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIE 176 (186)
T ss_dssp CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHhh
Confidence 4467889999998778899999999999999999999999999999999999999887643
No 33
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.33 E-value=4.3e-12 Score=79.31 Aligned_cols=63 Identities=33% Similarity=0.393 Sum_probs=56.3
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHHHhh
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEK 68 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~~~~ 68 (101)
+.++.+|+||+|+.+.+.+..+++..+++.++++||++||++|.||+++|..+++.+.+....
T Consensus 113 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 175 (203)
T 1zbd_A 113 NAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSE 175 (203)
T ss_dssp SCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 455678899999988888999999999999999999999999999999999999988876543
No 34
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.33 E-value=3.7e-12 Score=79.40 Aligned_cols=60 Identities=30% Similarity=0.421 Sum_probs=54.4
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCC-CHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSI-NVEDAFFTLARDIKAQ 65 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~-~V~~~F~~~~~~i~~~ 65 (101)
+.++.+|+||+|+.+.+.++.+++..+++.++++||++||++|. ||+++|..+++.+.+.
T Consensus 132 ~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 132 NVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 192 (196)
T ss_dssp CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhh
Confidence 34567889999998778899999999999999999999999999 9999999999988764
No 35
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.32 E-value=1.4e-12 Score=81.69 Aligned_cols=60 Identities=22% Similarity=0.295 Sum_probs=54.6
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~ 65 (101)
+..+.||+||+|+...+.++.+++..++..++++||++||++|.||+++|..+++.+.+.
T Consensus 129 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 129 RVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188 (201)
T ss_dssp CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 345678899999988889999999999999999999999999999999999999988754
No 36
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.32 E-value=5.2e-12 Score=77.27 Aligned_cols=60 Identities=38% Similarity=0.524 Sum_probs=53.2
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~ 65 (101)
+.++.+|+||+|+...+.+..+++..+++.++++|+++||++|.||+++|..+++.+.+.
T Consensus 116 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 116 DVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR 175 (180)
T ss_dssp TCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred CCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 345678899999988888999999999999999999999999999999999999887643
No 37
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.32 E-value=4.4e-12 Score=78.74 Aligned_cols=60 Identities=32% Similarity=0.330 Sum_probs=54.2
Q ss_pred CCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy17493 7 TKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQT 66 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~~ 66 (101)
..+.+|+||+|+...+.+..+++..++..+++.||++||++|.||+++|..+++.+.+..
T Consensus 131 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (193)
T 2oil_A 131 IVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV 190 (193)
T ss_dssp CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 446788999999877889999999999999999999999999999999999999888754
No 38
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.31 E-value=2.4e-12 Score=78.00 Aligned_cols=57 Identities=23% Similarity=0.211 Sum_probs=52.0
Q ss_pred CCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHH
Q psy17493 7 TKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~ 63 (101)
.++.+|+||+|+.+.+.++.+++..+++.++++||++||++|.||+++|..+++.+.
T Consensus 112 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 112 ICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp SEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence 445788999999887889999999999999999999999999999999999998775
No 39
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.31 E-value=5.6e-12 Score=77.35 Aligned_cols=61 Identities=31% Similarity=0.442 Sum_probs=54.7
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQT 66 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~~ 66 (101)
+.++.+|+||+|+.+.+.+..+++..+++.++++||++||+++.||+++|..+++.+.+..
T Consensus 123 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 123 NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 183 (187)
T ss_dssp TCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHHhh
Confidence 3556788999999877889999999999999999999999999999999999999887643
No 40
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.31 E-value=3.9e-12 Score=76.67 Aligned_cols=58 Identities=31% Similarity=0.436 Sum_probs=52.8
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~ 63 (101)
+.++.+|+||+|+.+.+.++.+++..+++.++++||++||++|.||+++|..+++.+.
T Consensus 109 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 109 NVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp TSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 4566788999999877889999999999999999999999999999999999998775
No 41
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.31 E-value=2.8e-12 Score=78.33 Aligned_cols=56 Identities=20% Similarity=0.118 Sum_probs=51.2
Q ss_pred CcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 9 SKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 9 ~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
+.+|+||+|+.+.+.++.+++..+++.++++||++||++|.||+++|..+++.+.+
T Consensus 118 iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 118 VALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp EEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred EEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 46789999998778899999999999999999999999999999999999987754
No 42
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.31 E-value=1.5e-12 Score=82.57 Aligned_cols=61 Identities=21% Similarity=0.213 Sum_probs=52.9
Q ss_pred cCCCcEEeecCCCCC------------CCCCCHHHHHHHHHHhCC-eEEEeccCCCCC-HHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSS------------MPQVSRERGEQLAIEYGI-KFMETSAKNSIN-VEDAFFTLARDIKAQT 66 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~------------~~~v~~~~~~~~a~~~~~-~~~etSAk~~~~-V~~~F~~~~~~i~~~~ 66 (101)
+..+.||+||+|+.+ .+.++.+++..+++.+++ .|||+||++|.| |+++|..+++.++...
T Consensus 131 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 131 STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccC
Confidence 345678899999965 378999999999999998 899999999998 9999999999887653
No 43
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.30 E-value=1.2e-11 Score=76.78 Aligned_cols=58 Identities=22% Similarity=0.189 Sum_probs=51.4
Q ss_pred cCCCcEEeecCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEeccCCCCCHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSM------------PQVSRERGEQLAIEYGI-KFMETSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~------------~~v~~~~~~~~a~~~~~-~~~etSAk~~~~V~~~F~~~~~~i~ 63 (101)
+.++.||+||+|+.+. +.++.+++..+++.++. .||++||++|.||+++|..+++.++
T Consensus 122 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 122 NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 4566788999999753 67999999999999997 8999999999999999999998775
No 44
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.29 E-value=7.8e-12 Score=75.64 Aligned_cols=59 Identities=37% Similarity=0.517 Sum_probs=51.9
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~ 65 (101)
+.++.+|+||+|+ ..+.+..+++..+++.++++||++||++|.||+++|..+++.+.+.
T Consensus 108 ~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 108 EAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp TCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3456788999999 4577889999999999999999999999999999999999888653
No 45
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.29 E-value=8.2e-12 Score=75.34 Aligned_cols=57 Identities=30% Similarity=0.482 Sum_probs=51.3
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHh-CCeEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEY-GIKFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~-~~~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
+.++.+|+||+|+.+.+.++.+++..+++.+ +.+||++||++|.||+++|..+++.+
T Consensus 108 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 108 DVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 4556788999999888889999999999998 78999999999999999999998866
No 46
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.28 E-value=5.4e-12 Score=77.26 Aligned_cols=58 Identities=29% Similarity=0.382 Sum_probs=51.6
Q ss_pred CCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 7 TKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
..+.+|+||+|+.+.+.++.+++..+++.++++||++||++|.||+++|..+++.+..
T Consensus 118 ~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 118 MVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp CEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred CcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3466789999998888899999999999999999999999999999999999887654
No 47
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.28 E-value=6.9e-12 Score=77.58 Aligned_cols=60 Identities=12% Similarity=0.030 Sum_probs=53.1
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGI-KFMETSAKNSINVEDAFFTLARDIKAQTE 67 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~-~~~etSAk~~~~V~~~F~~~~~~i~~~~~ 67 (101)
+.++.||+||+|+.+ .++.+++..+++.+++ +||++||++|.||+++|..+++.+.+...
T Consensus 135 ~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 135 DVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp SSCEEEEEECTTSTT--CCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEEchhccc--ccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 456778899999974 4889999999999998 99999999999999999999999987643
No 48
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.28 E-value=1e-11 Score=77.45 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=53.5
Q ss_pred cCCCcEEeecCCCCC------------CCCCCHHHHHHHHHHhCC-eEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSS------------MPQVSRERGEQLAIEYGI-KFMETSAKNSINVEDAFFTLARDIKAQT 66 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~------------~~~v~~~~~~~~a~~~~~-~~~etSAk~~~~V~~~F~~~~~~i~~~~ 66 (101)
+.++.||+||+|+.. .+.++.+++..+++.++. +||++||++|.||+++|..+++.+++..
T Consensus 124 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 124 KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence 456678899999864 478899999999999997 8999999999999999999999887654
No 49
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.27 E-value=3.7e-12 Score=76.68 Aligned_cols=58 Identities=31% Similarity=0.400 Sum_probs=52.4
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~ 63 (101)
+.++.+|+||+|+.+.+.+..+++..+++.++++||++||++|.||+++|..+++.+.
T Consensus 108 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 108 KVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHh
Confidence 4566788999999877889999999999999999999999999999999999988764
No 50
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.27 E-value=1.1e-11 Score=76.96 Aligned_cols=59 Identities=17% Similarity=0.294 Sum_probs=52.4
Q ss_pred CCCcEEeecCCCCC--CCCCCHHHHHHHHHHhCCe-EEEeccCCCCCHHHHHHHHHHHHHHH
Q psy17493 7 TKSKYIEVPNFVSS--MPQVSRERGEQLAIEYGIK-FMETSAKNSINVEDAFFTLARDIKAQ 65 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~--~~~v~~~~~~~~a~~~~~~-~~etSAk~~~~V~~~F~~~~~~i~~~ 65 (101)
.++.||+||+|+.+ .+.+..+++..+++.+++. ||++||++|.||+++|..+++.+++.
T Consensus 128 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 128 AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp SEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred CCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhc
Confidence 45678899999975 4789999999999999988 99999999999999999999988653
No 51
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.27 E-value=1e-11 Score=77.55 Aligned_cols=63 Identities=14% Similarity=0.221 Sum_probs=44.9
Q ss_pred cCCCcEEeecCCCCC-CCCCCHHHHHHHHHHhCCeEEEeccCC-CCCHHHHHHHHHHHHHHHHhh
Q psy17493 6 NTKSKYIEVPNFVSS-MPQVSRERGEQLAIEYGIKFMETSAKN-SINVEDAFFTLARDIKAQTEK 68 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~-~~~v~~~~~~~~a~~~~~~~~etSAk~-~~~V~~~F~~~~~~i~~~~~~ 68 (101)
+.++.+|+||+|+.+ .+.++.+++..+++.++++|+++||++ |.||+++|..+++.+.+....
T Consensus 132 ~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~~~ 196 (208)
T 2yc2_C 132 PLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYED 196 (208)
T ss_dssp CCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHHHHHh
Confidence 455678899999987 788999999999999999999999999 999999999999988766543
No 52
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.26 E-value=5.5e-12 Score=76.18 Aligned_cols=59 Identities=22% Similarity=0.261 Sum_probs=53.1
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
+.++.+|+||+|+.+.+.++.+++..+++.++++||++||++|.||+++|..+++.+++
T Consensus 109 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 109 DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp SCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred CCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 45667889999998778899999999999999999999999999999999999987753
No 53
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.26 E-value=6.2e-12 Score=78.30 Aligned_cols=58 Identities=28% Similarity=0.470 Sum_probs=51.8
Q ss_pred CCCcEEeecCCCCCCCCCCHHHHHHHHHHh-CCeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 7 TKSKYIEVPNFVSSMPQVSRERGEQLAIEY-GIKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~-~~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
..+.||+||+|+.+.+.++.+++..+++.+ ++.||++||++|.||+++|..+++.+.+
T Consensus 132 ~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 132 AELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp CEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 446788999999887889999999999985 7899999999999999999999988764
No 54
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.25 E-value=2.4e-11 Score=76.26 Aligned_cols=60 Identities=37% Similarity=0.515 Sum_probs=53.1
Q ss_pred CCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q psy17493 7 TKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTE 67 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~~~ 67 (101)
.++.+|+||+|+ ..+.+..+++..+++.++++||++||++|.||+++|..+++.+.+...
T Consensus 126 ~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 185 (213)
T 3cph_A 126 AQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID 185 (213)
T ss_dssp SEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 456788999999 557888999999999999999999999999999999999998877653
No 55
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.25 E-value=9.4e-12 Score=77.78 Aligned_cols=58 Identities=33% Similarity=0.435 Sum_probs=51.2
Q ss_pred cCCCcEEeecCCCC------CCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVS------SMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~------~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~ 63 (101)
+.++.||+||+|+. ..+.+..+++..++..++++||++||++|.||+++|..+++.+.
T Consensus 133 ~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 133 TVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp -CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 35567889999985 46789999999999999999999999999999999999998775
No 56
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.24 E-value=2.3e-11 Score=74.32 Aligned_cols=61 Identities=31% Similarity=0.224 Sum_probs=51.9
Q ss_pred cCCCcEEeecCCCC-CCCCCCHHHHHHHHH-HhCCeEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVS-SMPQVSRERGEQLAI-EYGIKFMETSAKNSINVEDAFFTLARDIKAQT 66 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~-~~~~v~~~~~~~~a~-~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~~ 66 (101)
+.++.+|+||+|+. ..+.+..+++..+++ ..+.+||++||++|.||+++|..+++.++++.
T Consensus 118 ~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 118 TFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 180 (182)
T ss_dssp TCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 44667889999994 456788999999998 45689999999999999999999999887653
No 57
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.24 E-value=7.8e-12 Score=75.55 Aligned_cols=54 Identities=26% Similarity=0.346 Sum_probs=48.5
Q ss_pred CcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 9 SKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 9 ~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
+.+|+||+|+.+.+.++.+++..++..++++||++||++|.||+++|..+++.+
T Consensus 114 iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 114 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp EEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred EEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 456679999987788999999999999999999999999999999999998754
No 58
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.23 E-value=1.2e-11 Score=78.27 Aligned_cols=60 Identities=20% Similarity=0.205 Sum_probs=52.5
Q ss_pred cCCCcEEeecCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSM------------PQVSRERGEQLAIEYGI-KFMETSAKNSINVEDAFFTLARDIKAQ 65 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~------------~~v~~~~~~~~a~~~~~-~~~etSAk~~~~V~~~F~~~~~~i~~~ 65 (101)
+..+.||+||+|+... +.++.+++..+++.+++ +||++||++|.||+++|..+++.+++.
T Consensus 138 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 138 KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 4566788999999654 47899999999999997 899999999999999999999988754
No 59
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.23 E-value=1.4e-11 Score=74.47 Aligned_cols=55 Identities=25% Similarity=0.314 Sum_probs=49.6
Q ss_pred CCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 8 KSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 8 ~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
.+.+|+||+|+.+.+.+..+++..+++.++++||++||++|.||+++|..+++.+
T Consensus 113 ~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 113 VVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp EEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred cEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 3456789999988788999999999999999999999999999999999998765
No 60
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.23 E-value=2.7e-12 Score=80.79 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=51.4
Q ss_pred cCCCcEEeecCCCCCCC--------CCCHHHHHHHHHHhCC-eEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMP--------QVSRERGEQLAIEYGI-KFMETSAKNSINVEDAFFTLARDIKAQ 65 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~--------~v~~~~~~~~a~~~~~-~~~etSAk~~~~V~~~F~~~~~~i~~~ 65 (101)
+.++.||+||+|+.+.+ .++.+++..+++.++. +||++||++|.||+++|..+++.+.+.
T Consensus 113 ~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 113 NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhh
Confidence 45667889999986544 3588999999999996 899999999999999999999988754
No 61
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.23 E-value=1.3e-11 Score=76.42 Aligned_cols=58 Identities=29% Similarity=0.307 Sum_probs=49.6
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCC---CCHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNS---INVEDAFFTLARDIK 63 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~---~~V~~~F~~~~~~i~ 63 (101)
+..+.+|+||+|+.+.+.++.+++..++..+++.||++||+++ .||+++|..+++.+.
T Consensus 127 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 127 DIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred CCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 3556788999999887889999999999999999999999999 999999999988764
No 62
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.23 E-value=2.6e-11 Score=75.95 Aligned_cols=58 Identities=21% Similarity=0.186 Sum_probs=51.4
Q ss_pred cCCCcEEeecCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEeccCCCCCHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSM------------PQVSRERGEQLAIEYGI-KFMETSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~------------~~v~~~~~~~~a~~~~~-~~~etSAk~~~~V~~~F~~~~~~i~ 63 (101)
+.++.+|+||+|+... +.++.+++..+++.++. .||++||++|.||+++|..+++.++
T Consensus 129 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 129 NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 4566788999999764 67899999999999998 8999999999999999999998775
No 63
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.22 E-value=3e-11 Score=73.66 Aligned_cols=58 Identities=28% Similarity=0.213 Sum_probs=50.7
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHH-HhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAI-EYGIKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~-~~~~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
+.++.+|+||+|+. .+.+..+++..+++ ..+++||++||++|.||+++|..+++.+++
T Consensus 116 ~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 116 SFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp TSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 34567889999997 57889999999998 566899999999999999999999998864
No 64
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.22 E-value=1.2e-11 Score=78.11 Aligned_cols=60 Identities=17% Similarity=0.132 Sum_probs=50.8
Q ss_pred CCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy17493 7 TKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQT 66 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~~ 66 (101)
..+.+|+||+|+.+.+.+..+++..++..++++||++||++|.||+++|..+++.+.+..
T Consensus 118 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 118 APIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRP 177 (218)
T ss_dssp SCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCT
T ss_pred CCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence 466788999999888899999999999999999999999999999999999999887543
No 65
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.22 E-value=5.9e-12 Score=78.30 Aligned_cols=59 Identities=29% Similarity=0.329 Sum_probs=51.8
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
+.++.+|+||+|+.+.+.++.+++..+++.++++||++||++|.||+++|..+++.+.+
T Consensus 128 ~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 128 NIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp TCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred CCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 34567889999998778899999999999999999999999999999999999886643
No 66
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.21 E-value=6.3e-11 Score=73.32 Aligned_cols=58 Identities=22% Similarity=0.232 Sum_probs=51.5
Q ss_pred CCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy17493 7 TKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~ 65 (101)
.++.+|+||+| ...+.+..+++..+++.++++||++||++|.||+++|..+++.+.++
T Consensus 148 ~piilv~NK~D-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 148 YIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp CEEEEEEECTT-CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCC-cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 45678899999 55678999999999999999999999999999999999999988764
No 67
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.21 E-value=6.8e-11 Score=73.03 Aligned_cols=59 Identities=36% Similarity=0.526 Sum_probs=52.7
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~ 65 (101)
+.++.+|+||+|+.. +.+..+++.++++.++++||++||++|.||+++|..+++.+.+.
T Consensus 126 ~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 126 DVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp CCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 456678899999976 67889999999999999999999999999999999999988754
No 68
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.20 E-value=5.9e-11 Score=73.34 Aligned_cols=58 Identities=24% Similarity=0.210 Sum_probs=51.0
Q ss_pred CCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy17493 7 TKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~ 65 (101)
..+.+|+||+|+. .+.+..+++..+++.+++.||++||+++.||+++|..+++.+.+.
T Consensus 122 ~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 122 IVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 179 (195)
T ss_dssp CEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred CcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence 3446789999994 467889999999999999999999999999999999999988753
No 69
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.19 E-value=9.3e-11 Score=70.29 Aligned_cols=57 Identities=35% Similarity=0.557 Sum_probs=50.9
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~ 63 (101)
+.++.+++||+|+.. +.+..+++..+++.+++++|++||++|.||+++|..+++.+.
T Consensus 108 ~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 108 DVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp CCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred CCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 456678899999976 678889999999999999999999999999999999998764
No 70
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.19 E-value=1.3e-11 Score=75.24 Aligned_cols=57 Identities=33% Similarity=0.353 Sum_probs=50.9
Q ss_pred CCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHH
Q psy17493 7 TKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~ 63 (101)
.++.+|+||+|+.+.+.++.+++..++..++++|+++||++|.||+++|..+++.+.
T Consensus 120 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 120 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp SEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred CcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 345678999999887889999999999999999999999999999999999987553
No 71
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.19 E-value=8e-12 Score=76.53 Aligned_cols=58 Identities=21% Similarity=0.226 Sum_probs=49.7
Q ss_pred cCCCcEEeecCCCCCCCC----------CCHHHHHHHHHHhCC-eEEEeccCCCCCHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQ----------VSRERGEQLAIEYGI-KFMETSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~etSAk~~~~V~~~F~~~~~~i~ 63 (101)
+.++.+|+||+|+.+.+. ++.+++..+++.++. +||++||++|.||+++|..+++.++
T Consensus 112 ~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 112 GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456678899999865443 588999999999996 8999999999999999999988764
No 72
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.19 E-value=3.3e-11 Score=72.89 Aligned_cols=57 Identities=28% Similarity=0.204 Sum_probs=51.0
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
+.++.+|+||+|+.+.+.+...++..++..++++||++||++|.||+++|..+++.+
T Consensus 109 ~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 109 SIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred CCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence 456778899999987788999999999999999999999999999999999998644
No 73
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.18 E-value=1.2e-11 Score=76.31 Aligned_cols=59 Identities=24% Similarity=0.296 Sum_probs=50.7
Q ss_pred cCCCcEEeecCCCCC------------CCCCCHHHHHHHHHHhC-CeEEEeccC-CCCCHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSS------------MPQVSRERGEQLAIEYG-IKFMETSAK-NSINVEDAFFTLARDIKA 64 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~------------~~~v~~~~~~~~a~~~~-~~~~etSAk-~~~~V~~~F~~~~~~i~~ 64 (101)
+.++.||+||+|+.+ .+.++.+++..+++.++ .+||++||+ ++.||+++|..+++.+++
T Consensus 111 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 111 NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 345678899999964 37799999999999998 789999999 689999999999988763
No 74
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.18 E-value=2.1e-11 Score=73.65 Aligned_cols=56 Identities=36% Similarity=0.426 Sum_probs=48.8
Q ss_pred CCCcEEeecCCCCCC---CCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 7 TKSKYIEVPNFVSSM---PQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~---~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
..+.+|+||+|+... +.+..+++..++..++++||++||++|.||+++|..+++.+
T Consensus 109 ~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 109 IIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp CEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred CcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 345578999998654 78999999999999999999999999999999999987654
No 75
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.17 E-value=6.7e-11 Score=74.36 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=51.9
Q ss_pred cCCCcEEeecCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSM------------PQVSRERGEQLAIEYGI-KFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~------------~~v~~~~~~~~a~~~~~-~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
+.++.+|+||+|+... +.++.+++..++..++. .||++||++|.||+++|..+++.+++
T Consensus 129 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 129 NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 4566788999999654 67899999999999997 89999999999999999999988764
No 76
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.17 E-value=3.7e-11 Score=73.69 Aligned_cols=59 Identities=20% Similarity=0.222 Sum_probs=51.2
Q ss_pred cCCCcEEeecCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSM------------PQVSRERGEQLAIEYGI-KFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~------------~~v~~~~~~~~a~~~~~-~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
+.++.+|+||+|+.+. +.++.+++..+++.++. +||++||++|.||+++|..+++.+++
T Consensus 109 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 109 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence 4556788999998643 68899999999999997 89999999999999999999987753
No 77
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.16 E-value=2.7e-11 Score=76.48 Aligned_cols=59 Identities=24% Similarity=0.296 Sum_probs=50.9
Q ss_pred cCCCcEEeecCCCCC------------CCCCCHHHHHHHHHHhC-CeEEEeccC-CCCCHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSS------------MPQVSRERGEQLAIEYG-IKFMETSAK-NSINVEDAFFTLARDIKA 64 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~------------~~~v~~~~~~~~a~~~~-~~~~etSAk-~~~~V~~~F~~~~~~i~~ 64 (101)
+..+.||+||+|+.+ .+.++.+++..+++.++ ..||++||| ++.||+++|..+++.+++
T Consensus 132 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 132 NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 355678899999964 36799999999999998 689999999 689999999999988764
No 78
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.14 E-value=1.5e-10 Score=73.83 Aligned_cols=61 Identities=21% Similarity=0.063 Sum_probs=49.4
Q ss_pred cCCCcEEeecCCCCCCCCCCHH---HHHHHHHHhC--CeEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRE---RGEQLAIEYG--IKFMETSAKNSINVEDAFFTLARDIKAQT 66 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~---~~~~~a~~~~--~~~~etSAk~~~~V~~~F~~~~~~i~~~~ 66 (101)
+.++.+|+||+|+.+.+.+..+ .+..++...+ +.||++||++|.||+++|..+++.+.+..
T Consensus 142 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 142 NKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence 4556788999999877777765 5667778877 88999999999999999999999887654
No 79
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.13 E-value=6.3e-12 Score=76.56 Aligned_cols=56 Identities=11% Similarity=0.067 Sum_probs=46.7
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
+..+.+|+||+|+...+.++. ++..+++.++++|+++||++|.||+++|..+++.+
T Consensus 108 ~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 108 GANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp TCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred CCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 456678899999865555553 47889999999999999999999999999998754
No 80
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.08 E-value=3.4e-11 Score=75.70 Aligned_cols=57 Identities=21% Similarity=0.239 Sum_probs=48.5
Q ss_pred cCCCcEEeecCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSM------------PQVSRERGEQLAIEYGI-KFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~------------~~v~~~~~~~~a~~~~~-~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
+.++.+|+||+|+... +.++.+++..+++.++. +||++||++|.||+++|..+++.+
T Consensus 134 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 134 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp SCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred CCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 4566788999998654 34889999999999996 599999999999999999998754
No 81
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.07 E-value=2.1e-11 Score=76.13 Aligned_cols=56 Identities=14% Similarity=0.121 Sum_probs=47.4
Q ss_pred cCCCcEEeecCCCCC-------CCCCCHHHHHHHHH----HhCCeEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSS-------MPQVSRERGEQLAI----EYGIKFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~-------~~~v~~~~~~~~a~----~~~~~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
+..+.||+||+|+.+ .+.+..+++..+++ .+++.||+|||++ .||+++|..+++.+
T Consensus 129 ~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 129 DMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred CCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 456678899999753 46788888899999 7788999999999 99999999998865
No 82
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.07 E-value=1.7e-10 Score=70.96 Aligned_cols=57 Identities=18% Similarity=0.036 Sum_probs=48.0
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCe-------EEEeccCCCCCHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIK-------FMETSAKNSINVEDAFFTLARDIKAQ 65 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~-------~~etSAk~~~~V~~~F~~~~~~i~~~ 65 (101)
+.++.+|+||+|+...+ .+++..+++.++.+ ||++||++|.||+++|..+++.+.+.
T Consensus 122 ~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 122 DIPTIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp TCCEEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred CCceEEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 45677889999997544 67788999999875 69999999999999999999887654
No 83
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.06 E-value=1.4e-10 Score=77.16 Aligned_cols=59 Identities=20% Similarity=0.222 Sum_probs=51.7
Q ss_pred cCCCcEEeecCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSM------------PQVSRERGEQLAIEYGI-KFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~------------~~v~~~~~~~~a~~~~~-~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
+.++.+|+||+|+.+. +.++.+++..+++.++. +||++||++|.||+++|..+++.++.
T Consensus 259 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 259 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 4566788999998543 78999999999999997 89999999999999999999988764
No 84
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.62 E-value=1.9e-11 Score=76.60 Aligned_cols=57 Identities=21% Similarity=0.235 Sum_probs=48.6
Q ss_pred cCCCcEEeecCCCCCCC------------CCCHHHHHHHHHHhCC-eEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMP------------QVSRERGEQLAIEYGI-KFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~------------~v~~~~~~~~a~~~~~-~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
+.++.+|+||+|+.+.+ .++.+++..+++.++. +||++||++|.||+++|..+++.+
T Consensus 134 ~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 134 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 44567889999996543 6788899999999997 899999999999999999998765
No 85
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.04 E-value=6.3e-12 Score=78.60 Aligned_cols=57 Identities=33% Similarity=0.444 Sum_probs=44.2
Q ss_pred CCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHH
Q psy17493 7 TKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~ 63 (101)
.++.||+||+|+.+.+.+..+++..++..++++||++||++|.||+++|..+++.+.
T Consensus 139 ~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 139 VNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp SEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred CCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455678999999888888888899999999999999999999999999999987654
No 86
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.04 E-value=5.6e-12 Score=85.27 Aligned_cols=58 Identities=16% Similarity=0.119 Sum_probs=49.1
Q ss_pred CCCcEEeecCCCCCC-------CCCCHHHHHHHHHH----hCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy17493 7 TKSKYIEVPNFVSSM-------PQVSRERGEQLAIE----YGIKFMETSAKNSINVEDAFFTLARDIKAQ 65 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~-------~~v~~~~~~~~a~~----~~~~~~etSAk~~~~V~~~F~~~~~~i~~~ 65 (101)
.++.|+|||+||.++ |.|+.+++++||+. +++.|||||||+ .||.++|..+++.++..
T Consensus 107 ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 107 INIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp CEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSSTT
T ss_pred CcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHhh
Confidence 455678999999753 57889999999996 689999999998 59999999999887643
No 87
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.03 E-value=1.1e-10 Score=76.00 Aligned_cols=55 Identities=22% Similarity=0.224 Sum_probs=46.0
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHH-hCCeEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIE-YGIKFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~-~~~~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
+..+.||+||+|+.+.+.+ +++..++.. .++.||++||++|.||+++|..+++.+
T Consensus 198 ~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 198 KKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp TCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3556788999999765555 578888887 478999999999999999999998865
No 88
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.01 E-value=1.9e-10 Score=71.31 Aligned_cols=61 Identities=8% Similarity=0.013 Sum_probs=43.6
Q ss_pred cCCCcEEeecCCCCCCCCCC---HHHHHH-HHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVS---RERGEQ-LAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQT 66 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~---~~~~~~-~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~~ 66 (101)
+..+.||+||+|+....... ...+.. +++..++.||++||++|.||+++|..+++.+.+..
T Consensus 127 ~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 127 RVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp BCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 45677889999997543211 111111 12446788999999999999999999999887653
No 89
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.01 E-value=1.4e-09 Score=67.94 Aligned_cols=60 Identities=23% Similarity=0.286 Sum_probs=53.9
Q ss_pred CCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy17493 7 TKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQT 66 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~~ 66 (101)
..+.+++||.|+.+.+.++.+++..++...++.|++|||+++.|++++|..+.+.+.+..
T Consensus 111 ~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~~~ 170 (199)
T 2f9l_A 111 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIV 170 (199)
T ss_dssp CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 346778999999887888999999999999999999999999999999999999887654
No 90
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.96 E-value=2.8e-10 Score=72.06 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=48.5
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~ 65 (101)
+..+.+|+||+|+.+.+. . .++..+++.+++.||++||++|.||+++|..+++.+...
T Consensus 119 ~~p~ilv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 119 NIPIVLCGNKVDIKDRKV-K-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 176 (221)
T ss_dssp TCCEEEEEECTTSSSCSS-C-GGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTC
T ss_pred CCCEEEEEECCccccccc-c-HHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 456778899999975443 3 267778999999999999999999999999999988764
No 91
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.95 E-value=5.3e-10 Score=69.96 Aligned_cols=54 Identities=13% Similarity=-0.007 Sum_probs=43.8
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHH-----------------hCCeEEEeccCCCCCHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIE-----------------YGIKFMETSAKNSINVEDAFFTLARD 61 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~-----------------~~~~~~etSAk~~~~V~~~F~~~~~~ 61 (101)
+.++.+|+||+|+.. .++.+++.+++.. .+..||++||++|.||+++|..+++.
T Consensus 126 ~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 126 NVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp TSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred CCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 456678899999964 6788888887663 23579999999999999999998753
No 92
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.94 E-value=6.2e-11 Score=71.42 Aligned_cols=57 Identities=7% Similarity=-0.012 Sum_probs=38.7
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHH-H----HHHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQ-L----AIEYGIKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~-~----a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
+.++.+|+||+|+.+. ...++... + +...+++|+++||++|.||+++|..+++.+.+
T Consensus 101 ~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 101 DAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp TCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred CCeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence 4456788999999653 22222221 1 11234579999999999999999999987653
No 93
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.93 E-value=5e-10 Score=69.59 Aligned_cols=54 Identities=11% Similarity=-0.095 Sum_probs=42.9
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHH------------hCCeEEEeccCCCCCHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIE------------YGIKFMETSAKNSINVEDAFFTLARD 61 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~------------~~~~~~etSAk~~~~V~~~F~~~~~~ 61 (101)
+.++.+|+||+|+.. .++.+++.++... .+++||++||++|.||+++|..+++.
T Consensus 124 ~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 124 DVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred CCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 456778899999974 6777777766543 34679999999999999999998753
No 94
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.93 E-value=1.8e-10 Score=70.95 Aligned_cols=58 Identities=12% Similarity=0.079 Sum_probs=48.4
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
+.++.+++||+|+...+.+. .++..+++.++++|+++||+++.||+++|..+++.+..
T Consensus 112 ~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 112 GANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp TCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTT
T ss_pred CCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 45567889999986555555 46788999999999999999999999999999987754
No 95
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.92 E-value=1.1e-10 Score=70.58 Aligned_cols=59 Identities=12% Similarity=0.071 Sum_probs=40.8
Q ss_pred cCCCcEEeecCCCCCCCCC---CHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQV---SRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v---~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
+.++.+|+||+|+.+.... ....+..++...+++||++||++|.||+++|..+++.+.+
T Consensus 108 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 108 KAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp TCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 4556788999999754321 1111112233345689999999999999999999987753
No 96
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.90 E-value=2e-09 Score=66.96 Aligned_cols=56 Identities=29% Similarity=0.369 Sum_probs=50.4
Q ss_pred CCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 7 TKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
..+.+++||.|+.+.+.+..+++..++...++.|++|||+++.|++++|..+.+.+
T Consensus 135 ~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 135 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 34677899999987788889999999999999999999999999999999998765
No 97
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.90 E-value=1.3e-10 Score=71.83 Aligned_cols=59 Identities=12% Similarity=0.023 Sum_probs=46.1
Q ss_pred cCCCcEEeecCCCCCCCCCC---HHHHHHHHHHhCCe----EEEeccCCCC-CHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVS---RERGEQLAIEYGIK----FMETSAKNSI-NVEDAFFTLARDIKA 64 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~---~~~~~~~a~~~~~~----~~etSAk~~~-~V~~~F~~~~~~i~~ 64 (101)
+..+.||+||+|+.+.+.++ .+.+..+++.++++ |+++||++|. +++++|..+.+.+.+
T Consensus 112 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 112 SSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp TCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred CCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 45567789999997655543 35567777778876 9999999997 999999999887654
No 98
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.88 E-value=6.7e-10 Score=68.47 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=45.6
Q ss_pred cCCCcEEeecCCCCCC--CCCCHHHHHHHHHHhC-CeEEEeccCCCCCHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSM--PQVSRERGEQLAIEYG-IKFMETSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~--~~v~~~~~~~~a~~~~-~~~~etSAk~~~~V~~~F~~~~~~i~ 63 (101)
+..+.+|+||+|+.+. +.+..+++..++..++ ++||++||++|.||+++|..+++.+.
T Consensus 133 ~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 133 NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 4567788999998642 3445566777777755 78999999999999999999988764
No 99
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.88 E-value=8.1e-10 Score=73.68 Aligned_cols=53 Identities=15% Similarity=0.120 Sum_probs=43.4
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhC--CeEEEeccCCCCCHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYG--IKFMETSAKNSINVEDAFFTLAR 60 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~--~~~~etSAk~~~~V~~~F~~~~~ 60 (101)
+.++.||+||+||.+.+.+ +++..+++.++ ..||+|||++|.||+++|..+..
T Consensus 115 ~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 115 ELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp TCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred CCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 4456788999999754443 56788888888 89999999999999999988753
No 100
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.86 E-value=1.6e-10 Score=72.72 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=20.8
Q ss_pred CCeEEEeccCCC------CCHHHHHHHHHHH
Q psy17493 37 GIKFMETSAKNS------INVEDAFFTLARD 61 (101)
Q Consensus 37 ~~~~~etSAk~~------~~V~~~F~~~~~~ 61 (101)
++.|||||||+| .||+++|..+++.
T Consensus 183 ~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 183 KVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp CEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 677999999999 9999999999864
No 101
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.85 E-value=3.1e-09 Score=74.34 Aligned_cols=60 Identities=5% Similarity=-0.099 Sum_probs=51.1
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHh-----CCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEY-----GIKFMETSAKNSINVEDAFFTLARDIKAQ 65 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~-----~~~~~etSAk~~~~V~~~F~~~~~~i~~~ 65 (101)
+..+.||+||+|+.+.+.++.+++.++++.. +++|+++||++|.||+++|..+++.+...
T Consensus 306 ~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 306 GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp TCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred CCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence 4556788999999888888888888888876 57899999999999999999998876543
No 102
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.85 E-value=1.6e-09 Score=66.99 Aligned_cols=57 Identities=12% Similarity=0.041 Sum_probs=41.9
Q ss_pred cCCCcEEeecCCCCCCCCCCH--HHHHH-HHHHhCCeEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSR--ERGEQ-LAIEYGIKFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~--~~~~~-~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
+.++.+|+||+|+.+.+.+.. +++.+ ++...+.+||++||++|.||+++|..+++.+
T Consensus 134 ~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 134 GIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp TCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 356678899999976555433 23332 3333467899999999999999999998765
No 103
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.84 E-value=4.3e-10 Score=69.33 Aligned_cols=57 Identities=9% Similarity=-0.025 Sum_probs=39.4
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHH-----HHHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQL-----AIEYGIKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~-----a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
+.++.+++||+|+...+. .++.... +...++.||++||++|.||+++|..+++.+.+
T Consensus 117 ~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 117 CVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp TCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred CCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 456678899999975433 2332221 11234679999999999999999999887654
No 104
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.84 E-value=3.6e-10 Score=69.80 Aligned_cols=57 Identities=9% Similarity=0.031 Sum_probs=40.5
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHH-H----HHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGE-Q----LAIEYGIKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~-~----~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
+.++.+|+||+|+.... ..++.. . ++...+++|+++||++|.||+++|..+++.+.+
T Consensus 123 ~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 123 KSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp TCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHh
Confidence 44567889999997532 222222 1 222335679999999999999999999988764
No 105
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.83 E-value=1.5e-10 Score=72.12 Aligned_cols=56 Identities=9% Similarity=-0.006 Sum_probs=38.6
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHH-HH----HHHhCCeEEEeccCCCCCHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGE-QL----AIEYGIKFMETSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~-~~----a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~ 63 (101)
+.++.+|+||+|+.+. ...++.. .+ +...+++|+++||++|.||+++|..+++.+.
T Consensus 130 ~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 130 DAVLLVFANKQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp TCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred CCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 4456788999999653 2222221 11 1123457999999999999999999987653
No 106
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.83 E-value=4.7e-09 Score=64.82 Aligned_cols=56 Identities=11% Similarity=0.052 Sum_probs=43.3
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCCCCHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAI-----EYGIKFMETSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~-----~~~~~~~etSAk~~~~V~~~F~~~~~~i~ 63 (101)
+..+.+|+||+|+.+ .+..++...+.. ..++.||++||++|.||+++|..+++.+.
T Consensus 126 ~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 126 RIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp CCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred CCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 456678899999964 455666666653 23578999999999999999999988664
No 107
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.82 E-value=6.4e-10 Score=66.64 Aligned_cols=52 Identities=10% Similarity=0.013 Sum_probs=40.9
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGI-KFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~-~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
+.++.+|+||+|+.+. .+++..++ .+++ +||++||++|.||+++|..+++.+
T Consensus 108 ~~p~ilv~nK~Dl~~~----~~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 108 GKPVILVATKVDDPKH----ELYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp TCCEEEEEECCCSGGG----GGGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred CCCEEEEEECcccccc----hHhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 4556788999998653 24455566 6777 799999999999999999988753
No 108
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.82 E-value=5.2e-10 Score=76.31 Aligned_cols=60 Identities=15% Similarity=-0.021 Sum_probs=49.3
Q ss_pred cCCCcEEeecCCCCCCC---------------CCCHHHHHHHHH-----------HhCCeEEEeccCCCCCHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMP---------------QVSRERGEQLAI-----------EYGIKFMETSAKNSINVEDAFFTLA 59 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~---------------~v~~~~~~~~a~-----------~~~~~~~etSAk~~~~V~~~F~~~~ 59 (101)
+..+.|++||.||..++ .++.+++..|+. ..++.|++|||+++.||+++|..++
T Consensus 260 ~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~ 339 (353)
T 1cip_A 260 DTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVT 339 (353)
T ss_dssp TSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHH
Confidence 45677889999984322 478899999987 3467899999999999999999999
Q ss_pred HHHHHH
Q psy17493 60 RDIKAQ 65 (101)
Q Consensus 60 ~~i~~~ 65 (101)
+.+++.
T Consensus 340 ~~i~~~ 345 (353)
T 1cip_A 340 DVIIKN 345 (353)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 109
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.81 E-value=5.2e-09 Score=66.32 Aligned_cols=54 Identities=9% Similarity=-0.016 Sum_probs=45.2
Q ss_pred cEEeecCCCCCCCCCCHHHHHHHHHHh--CCeEEEeccCCCCCHHHHHHHHHHHHH
Q psy17493 10 KYIEVPNFVSSMPQVSRERGEQLAIEY--GIKFMETSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 10 ~lv~nk~Dl~~~~~v~~~~~~~~a~~~--~~~~~etSAk~~~~V~~~F~~~~~~i~ 63 (101)
.+++||+|+.+.+.+..+++..++..+ +.++|++||++|.||+++|..+++.+.
T Consensus 168 iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 168 LIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp EEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 678999998654456778888888775 578999999999999999999987664
No 110
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.77 E-value=7.3e-09 Score=63.80 Aligned_cols=57 Identities=7% Similarity=-0.067 Sum_probs=42.6
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAI-----EYGIKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~-----~~~~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
+..+.+|+||+|+.+ .+..++...... ..++.|+++||++|.||+++|..+++.+..
T Consensus 117 ~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 117 KAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp TCEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred CCeEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 455678899999964 344555544432 245689999999999999999999987643
No 111
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.77 E-value=4.8e-09 Score=74.65 Aligned_cols=58 Identities=12% Similarity=-0.000 Sum_probs=47.4
Q ss_pred CCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 7 TKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
..+.+|+||+|+...+.+..+++..++...+.+||++||++|.||+++|..+++.+.+
T Consensus 151 ~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 151 SPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp CCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred CCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence 5567889999998888899999999999999999999999999999999999887754
No 112
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.76 E-value=2.1e-09 Score=70.26 Aligned_cols=56 Identities=13% Similarity=-0.013 Sum_probs=47.3
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
+.++.+++||+|+...+.+.. ++..+++.+|++++++||++|.||+++|..+++.+
T Consensus 110 ~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 110 EKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp TCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHh
Confidence 556778899999876555553 47889999999999999999999999999998754
No 113
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.75 E-value=1.9e-09 Score=71.13 Aligned_cols=56 Identities=14% Similarity=0.019 Sum_probs=46.8
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
+.++.+++||+|+...+.+. .++..+++.+|++++++||++|.||+++|..+++.+
T Consensus 107 ~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 107 GIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp CSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred CCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 55677889999986555555 467789999999999999999999999999997643
No 114
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.75 E-value=6.7e-10 Score=75.10 Aligned_cols=60 Identities=13% Similarity=0.005 Sum_probs=49.2
Q ss_pred cCCCcEEeecCCCCCCC----------------CCCHHHHHHHH----------HHhCCeEEEeccCCCCCHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMP----------------QVSRERGEQLA----------IEYGIKFMETSAKNSINVEDAFFTLA 59 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~----------------~v~~~~~~~~a----------~~~~~~~~etSAk~~~~V~~~F~~~~ 59 (101)
++.+.|++||+||..++ .++.++|..|. ...++.+++|||+++.||+.+|..++
T Consensus 234 ~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~ 313 (327)
T 3ohm_A 234 NSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVK 313 (327)
T ss_dssp TCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHH
Confidence 45567889999985433 57889999884 44567889999999999999999999
Q ss_pred HHHHHH
Q psy17493 60 RDIKAQ 65 (101)
Q Consensus 60 ~~i~~~ 65 (101)
+.|++.
T Consensus 314 ~~Il~~ 319 (327)
T 3ohm_A 314 DTILQL 319 (327)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 999864
No 115
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.72 E-value=1.6e-08 Score=62.04 Aligned_cols=58 Identities=10% Similarity=-0.058 Sum_probs=41.6
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAI-----EYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~-----~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~ 65 (101)
+.++.+|+||+|+.+.. ..++...... ..+++|+++||++|.||+++|..+++.+.+.
T Consensus 119 ~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 119 GATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp TCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred CCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 34567889999997543 3333332221 3456899999999999999999999877543
No 116
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.72 E-value=7.5e-10 Score=68.51 Aligned_cols=57 Identities=11% Similarity=0.028 Sum_probs=38.9
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHH-HH----HHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQ-LA----IEYGIKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~-~a----~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
+..+.+|+||+|+... ...++... +. ...++.||++||++|.||+++|..+++.+.+
T Consensus 124 ~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 124 GIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp TCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred CCCEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4556788999999653 22222221 11 1234579999999999999999999876543
No 117
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.72 E-value=7e-09 Score=63.64 Aligned_cols=54 Identities=6% Similarity=-0.103 Sum_probs=39.1
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHH-----HHhCCeEEEeccCCCCCHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLA-----IEYGIKFMETSAKNSINVEDAFFTLARD 61 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a-----~~~~~~~~etSAk~~~~V~~~F~~~~~~ 61 (101)
+..+.+|+||+|+.+ .+..++...+. ...++.||++||++|.||+++|..+++.
T Consensus 122 ~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 122 KAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp TCEEEEEEECTTSTT--CCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred CCeEEEEEECCCccc--CCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 445678899999964 34444444432 2234689999999999999999998753
No 118
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.71 E-value=3e-08 Score=60.54 Aligned_cols=58 Identities=10% Similarity=-0.029 Sum_probs=42.1
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHH-----hCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIE-----YGIKFMETSAKNSINVEDAFFTLARDIKAQ 65 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~-----~~~~~~etSAk~~~~V~~~F~~~~~~i~~~ 65 (101)
+.++.+|+||+|+.+. ...++...+... .+++|+++||++|.||+++|..+++.+.++
T Consensus 119 ~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 119 DAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp SCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHhc
Confidence 4456788999999643 344444433221 234799999999999999999999988654
No 119
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.68 E-value=6.3e-09 Score=69.45 Aligned_cols=54 Identities=13% Similarity=0.049 Sum_probs=42.9
Q ss_pred cCCCcEEeecCCCCCCCCCC-HHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVS-RERGEQLAIEYGIKFMETSAKNSINVEDAFFTLA 59 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~-~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~ 59 (101)
+.++.||+||+||.+.+.++ .++...+++.+|+++|++||++|.||+++|..+.
T Consensus 110 ~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 110 KVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp TCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred CCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence 45567889999997544333 4566677778899999999999999999998775
No 120
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.67 E-value=2.5e-08 Score=67.76 Aligned_cols=58 Identities=12% Similarity=0.091 Sum_probs=47.0
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~ 65 (101)
+..+.+|+||.|+.....+ +++..++...+++++++||++|.||+++|..+.+.+...
T Consensus 280 ~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 280 DLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp TSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 4566788999999754333 556777888889999999999999999999999887553
No 121
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.67 E-value=2.6e-08 Score=60.51 Aligned_cols=56 Identities=18% Similarity=0.065 Sum_probs=40.0
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHh-------C--CeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEY-------G--IKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~-------~--~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
+.++.+|+||+|+.+. ..++........ + ++||++||++|.||+++|..+++.+..
T Consensus 107 ~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 107 NVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp SCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhh
Confidence 3456788999999642 233333332222 2 479999999999999999999987654
No 122
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.67 E-value=3.2e-09 Score=72.64 Aligned_cols=61 Identities=11% Similarity=0.001 Sum_probs=47.9
Q ss_pred cCCCcEEeecCCCCCCC----------------CCCHHHHHHHHH-----------HhCCeEEEeccCCCCCHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMP----------------QVSRERGEQLAI-----------EYGIKFMETSAKNSINVEDAFFTL 58 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~----------------~v~~~~~~~~a~-----------~~~~~~~etSAk~~~~V~~~F~~~ 58 (101)
++.+.|++||+||..++ .++.+++..|+. ..++.|++|||+++.||+++|..+
T Consensus 268 ~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v 347 (362)
T 1zcb_A 268 NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDV 347 (362)
T ss_dssp TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHH
Confidence 45677889999985322 378899988872 345789999999999999999999
Q ss_pred HHHHHHHH
Q psy17493 59 ARDIKAQT 66 (101)
Q Consensus 59 ~~~i~~~~ 66 (101)
++.+++..
T Consensus 348 ~~~i~~~~ 355 (362)
T 1zcb_A 348 KDTILHDN 355 (362)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887653
No 123
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.65 E-value=2.5e-09 Score=72.07 Aligned_cols=57 Identities=7% Similarity=-0.037 Sum_probs=39.3
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHH-H----HHHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQ-L----AIEYGIKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~-~----a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
+..+.||+||+|+.+... .++... + +...+++||++||++|.||+++|..+++.+.+
T Consensus 266 ~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 266 DAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp TCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred CCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 344678899999975332 222221 1 11224569999999999999999999987753
No 124
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.63 E-value=5.6e-09 Score=71.25 Aligned_cols=61 Identities=13% Similarity=0.049 Sum_probs=44.9
Q ss_pred cCCCcEEeecCCCCCCCC--C-------------------CHHHHHHHHHHh----------------CCeEEEeccCCC
Q psy17493 6 NTKSKYIEVPNFVSSMPQ--V-------------------SRERGEQLAIEY----------------GIKFMETSAKNS 48 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~--v-------------------~~~~~~~~a~~~----------------~~~~~etSAk~~ 48 (101)
...+.|++||+||..++. + +.+++..|+... .+.|++|||+++
T Consensus 250 ~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~ 329 (354)
T 2xtz_A 250 KTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQ 329 (354)
T ss_dssp SCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCH
T ss_pred CCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecc
Confidence 355678899999853221 2 257888885531 234689999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy17493 49 INVEDAFFTLARDIKAQT 66 (101)
Q Consensus 49 ~~V~~~F~~~~~~i~~~~ 66 (101)
.||+++|..+++.+++..
T Consensus 330 ~nV~~vF~~v~~~I~~~~ 347 (354)
T 2xtz_A 330 KLVKKTFKLVDETLRRRN 347 (354)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 999999999999887653
No 125
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.57 E-value=7e-08 Score=64.45 Aligned_cols=57 Identities=9% Similarity=-0.037 Sum_probs=48.0
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhC--CeEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYG--IKFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~--~~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
+.++.+|+||+|+...+....+....+++.++ ..+|++||++|.||+++|..+++.+
T Consensus 122 ~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 122 NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYL 180 (308)
T ss_dssp CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhC
Confidence 35667889999997456677788888888886 7899999999999999999998765
No 126
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.57 E-value=3.3e-09 Score=64.96 Aligned_cols=50 Identities=10% Similarity=0.039 Sum_probs=37.1
Q ss_pred CCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHH
Q psy17493 7 TKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~ 63 (101)
.++.+|+||+|+.+... .+++..+.+||++||++|.||+++|..+++.+.
T Consensus 116 ~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 116 LPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp CCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred CCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 45677899999853211 123345678999999999999999999987653
No 127
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.55 E-value=9e-08 Score=66.63 Aligned_cols=59 Identities=5% Similarity=-0.098 Sum_probs=45.1
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHH-HHHH----hCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQ-LAIE----YGIKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~-~a~~----~~~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
+..+.+++||+|+.+.+.++.++... +.+. .+++|+++||++|.||+++|..+.+.+..
T Consensus 286 ~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 286 GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp TCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred CCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence 55677889999998766666554433 2232 36889999999999999999999887654
No 128
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.54 E-value=1.7e-08 Score=67.35 Aligned_cols=56 Identities=11% Similarity=0.046 Sum_probs=47.9
Q ss_pred cCCCcEEeecCCCCC--CCC----CCHHHHHHHHHHhC---CeEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSS--MPQ----VSRERGEQLAIEYG---IKFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~--~~~----v~~~~~~~~a~~~~---~~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
+.++.+++||+|+.. .+. +..+++..+++.+| ++|++|||++ .++.++|..+++.+
T Consensus 115 ~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 115 DAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp TCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred CCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 456778899999976 555 77789999999998 7899999999 89999999998754
No 129
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.53 E-value=1.2e-08 Score=71.02 Aligned_cols=57 Identities=14% Similarity=-0.034 Sum_probs=47.8
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
+.++.+|+||+|+...+.. +.+..+++.++++|+++||++|.||+++|..+++.+.+
T Consensus 140 ~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 140 EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCC
T ss_pred CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 4566788999999865554 67777888889999999999999999999999987743
No 130
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.51 E-value=1.3e-08 Score=67.85 Aligned_cols=57 Identities=16% Similarity=0.079 Sum_probs=38.6
Q ss_pred CCCcEEeecCCCCCCCC--CCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 7 TKSKYIEVPNFVSSMPQ--VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~--v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
..+.+|+||.|+...+. +..+++.++++.+++.||++||+++ ||+++|..+++.+..
T Consensus 156 ~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 156 VNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp SCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 35678899999875433 3457888999999999999999999 999999999988864
No 131
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.51 E-value=7e-08 Score=60.85 Aligned_cols=59 Identities=12% Similarity=-0.021 Sum_probs=45.9
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhC--CeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYG--IKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~--~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
+....+++||+|+...+.+..++...++...+ ++++++||++|.||+++|..+.+.+..
T Consensus 154 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 154 RVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred hcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 34567889999986433456777777777654 689999999999999999999887654
No 132
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.50 E-value=7.1e-08 Score=60.76 Aligned_cols=60 Identities=8% Similarity=-0.045 Sum_probs=40.3
Q ss_pred cCCCcEEeecCCCCCCCCCCH--HHHH-HHHHH------hCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSR--ERGE-QLAIE------YGIKFMETSAKNSINVEDAFFTLARDIKAQ 65 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~--~~~~-~~a~~------~~~~~~etSAk~~~~V~~~F~~~~~~i~~~ 65 (101)
+..+.+|+||+|+...+.+.. ++.. .+... .+.++|++||++|.||+++|..+.+.+...
T Consensus 144 ~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 144 GKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp CCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred CCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 345678899999865333211 1122 22222 457899999999999999999998877543
No 133
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.49 E-value=1.5e-07 Score=66.56 Aligned_cols=56 Identities=13% Similarity=0.023 Sum_probs=43.5
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
+.++.+|+||+|+.. .++.++...++. ++.+|+++||++|.||+++|..+.+.+..
T Consensus 350 ~~piivV~NK~DL~~--~~~~~~~~~~~~-~~~~~i~iSAktg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 350 NKRYLVVINKVDVVE--KINEEEIKNKLG-TDRHMVKISALKGEGLEKLEESIYRETQE 405 (482)
T ss_dssp TSSEEEEEEECSSCC--CCCHHHHHHHHT-CSTTEEEEEGGGTCCHHHHHHHHHHHTHH
T ss_pred CCCEEEEEECccccc--ccCHHHHHHHhc-CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 456678899999964 355566555543 44689999999999999999999987664
No 134
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.46 E-value=2.8e-08 Score=68.87 Aligned_cols=62 Identities=10% Similarity=-0.140 Sum_probs=45.2
Q ss_pred cCCCcEEeecCCCCCCCC---C---------------------------CHHHHHHHH-----HH--------hCCeEEE
Q psy17493 6 NTKSKYIEVPNFVSSMPQ---V---------------------------SRERGEQLA-----IE--------YGIKFME 42 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~---v---------------------------~~~~~~~~a-----~~--------~~~~~~e 42 (101)
+..+.|++||+||...+. + +.++|..|+ +. +++.|++
T Consensus 284 ~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~ 363 (402)
T 1azs_C 284 TISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 363 (402)
T ss_dssp SCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEE
T ss_pred CCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEE
Confidence 455678899999854322 2 146777764 22 2456889
Q ss_pred eccCCCCCHHHHHHHHHHHHHHHHh
Q psy17493 43 TSAKNSINVEDAFFTLARDIKAQTE 67 (101)
Q Consensus 43 tSAk~~~~V~~~F~~~~~~i~~~~~ 67 (101)
|||+++.||+++|..+++.+++...
T Consensus 364 TSA~d~~nV~~vF~~v~~~I~~~~l 388 (402)
T 1azs_C 364 TCAVDTENIRRVFNDCRDIIQRMHL 388 (402)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecCcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988876543
No 135
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.43 E-value=3.1e-08 Score=64.85 Aligned_cols=56 Identities=14% Similarity=0.044 Sum_probs=45.4
Q ss_pred CCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHH
Q psy17493 7 TKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~ 63 (101)
.++.+++||.|+...+.+... ...+++.+|++++++||++|.||+++|..+.+.+.
T Consensus 110 ~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 110 KNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAE 165 (271)
T ss_dssp CSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred CCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 566788999998644444433 67788999999999999999999999999987653
No 136
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.43 E-value=1.2e-08 Score=71.90 Aligned_cols=58 Identities=5% Similarity=-0.020 Sum_probs=38.9
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHH-----HHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQL-----AIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~-----a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~ 65 (101)
+..+.||+||+|+... ...++.... +...++.||++||++|.||+++|..+++.+.+.
T Consensus 423 ~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 423 DAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSK 485 (497)
T ss_dssp TCEEEEEEECCSSSSC--CCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC--
T ss_pred CCcEEEEEECCCCCcC--CCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4556788999999643 233332221 111234699999999999999999998876543
No 137
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.42 E-value=2.2e-07 Score=64.70 Aligned_cols=59 Identities=8% Similarity=-0.074 Sum_probs=43.6
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHH-HHHH----hCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQ-LAIE----YGIKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~-~a~~----~~~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
|..+.+++||+|+.+.+.++.++... +++. .+++++++||++|.||+++|..+++.+..
T Consensus 292 ~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 292 GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 55677889999997655555544432 2232 35789999999999999999999876544
No 138
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.37 E-value=4.1e-08 Score=64.10 Aligned_cols=55 Identities=13% Similarity=0.017 Sum_probs=43.9
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARD 61 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~ 61 (101)
+.++.+++||+|+...+.+.. ....+++.+|++++++||++|.||+++|..+.+.
T Consensus 110 ~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 110 GKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp CSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred CCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 556778899999865444432 2455888899999999999999999999998764
No 139
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.37 E-value=3e-07 Score=62.44 Aligned_cols=54 Identities=11% Similarity=0.102 Sum_probs=43.9
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhC--CeEEEeccCCCCCHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYG--IKFMETSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~--~~~~etSAk~~~~V~~~F~~~~~~i~ 63 (101)
..++.+|+||+|+... .+....+++.++ .++|++||+++.||+++|..+++.+.
T Consensus 274 ~~p~ilV~NK~Dl~~~----~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 274 ERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp TSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred CCCEEEEEECccCCCC----HHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence 4567889999998642 245677888776 68999999999999999999988764
No 140
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.33 E-value=1.5e-06 Score=59.42 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=41.2
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHH----HHHhCC---eEEEeccCCCCCHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQL----AIEYGI---KFMETSAKNSINVEDAFFTLAR 60 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~----a~~~~~---~~~etSAk~~~~V~~~F~~~~~ 60 (101)
+.++.+|+||+||.+ +.+..++..+| ++..|. .++++||++|.||+++|..+.+
T Consensus 96 ~~p~ilV~NK~DL~~-~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~ 156 (368)
T 3h2y_A 96 NNKVLLVGNKADLIP-KSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEY 156 (368)
T ss_dssp SSCEEEEEECGGGSC-TTSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred CCcEEEEEEChhcCC-cccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhh
Confidence 455678899999964 34444555444 666787 7999999999999999998865
No 141
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.29 E-value=3.5e-08 Score=64.92 Aligned_cols=56 Identities=7% Similarity=-0.004 Sum_probs=44.4
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
+.++.+|+||+|+...+.+.. ....+++.+|++++++||++|.||+++|..+.+.+
T Consensus 112 ~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 112 GIPCIVALNMLDIAEKQNIRI-EIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp TCCEEEEEECHHHHHHTTEEE-CHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred CCCEEEEEECccchhhhhHHH-HHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456778899999865444332 35678889999999999999999999999887644
No 142
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.28 E-value=7.1e-07 Score=63.01 Aligned_cols=55 Identities=13% Similarity=-0.019 Sum_probs=41.8
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~ 63 (101)
+.++.+|+||+|+...+.+. ...+++....+++++|||+|.||+++|..+.+.+.
T Consensus 343 ~~piIvV~NK~Dl~~~~~~~---~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 343 AAKFLTVANKLDRAANADAL---IRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TSEEEEEEECTTSCTTTHHH---HHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred CCCEEEEEECcCCCCccchh---HHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 34567789999997654432 24455553478999999999999999999988764
No 143
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.27 E-value=6.9e-08 Score=65.87 Aligned_cols=59 Identities=17% Similarity=0.089 Sum_probs=38.4
Q ss_pred cCCCcEEeecCCCCCCCCCCH--HHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSR--ERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~--~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~~ 65 (101)
+.++.+|+||+|+...+.+.. +++..+++.++++||++||+++.| ++.|..+++.+.+.
T Consensus 174 ~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 174 KVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp -SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 355678899999976555554 577788888899999999999999 99999999888653
No 144
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.22 E-value=1.1e-06 Score=60.71 Aligned_cols=55 Identities=13% Similarity=0.042 Sum_probs=36.7
Q ss_pred CCcEEeecCCCCCCCC--CCHHHHHHHHHHh---CCeEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 8 KSKYIEVPNFVSSMPQ--VSRERGEQLAIEY---GIKFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 8 ~~~lv~nk~Dl~~~~~--v~~~~~~~~a~~~---~~~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
++.+++||+|+.+... ...++...+++.. ++++|++||++|.||+++|+.+.+.+
T Consensus 137 ~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 137 KIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp CEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred eEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 4567899999975433 3456677777653 57899999999999999999987654
No 145
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.17 E-value=1.8e-07 Score=63.60 Aligned_cols=59 Identities=12% Similarity=0.019 Sum_probs=45.0
Q ss_pred cCCCcEEeecCCCCCCC---------------CCCHHHHHHHHHH-h--------------------------CCeEEEe
Q psy17493 6 NTKSKYIEVPNFVSSMP---------------QVSRERGEQLAIE-Y--------------------------GIKFMET 43 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~---------------~v~~~~~~~~a~~-~--------------------------~~~~~et 43 (101)
+..+.|++||+||..++ ....++|..|... + ++.+++|
T Consensus 228 ~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~T 307 (340)
T 4fid_A 228 GAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPT 307 (340)
T ss_dssp TSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEE
T ss_pred CCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEE
Confidence 45567889999974311 1357777766543 2 3678999
Q ss_pred ccCCCCCHHHHHHHHHHHHHH
Q psy17493 44 SAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 44 SAk~~~~V~~~F~~~~~~i~~ 64 (101)
||++..||..+|..+++.|++
T Consensus 308 sA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 308 NATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp CTTCHHHHHHHHHHHHHHHHH
T ss_pred EeeCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999987
No 146
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.06 E-value=4.6e-06 Score=58.87 Aligned_cols=58 Identities=9% Similarity=0.011 Sum_probs=42.9
Q ss_pred cCCCcEEeecCCCCCCC--CCCHHHHHHHHHHh----CCeEEEeccCCCCCHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMP--QVSRERGEQLAIEY----GIKFMETSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~--~v~~~~~~~~a~~~----~~~~~etSAk~~~~V~~~F~~~~~~i~ 63 (101)
+.+..+++||+|+.+.. ....++...+.+.. +.+++++||++|.||+++|+.+.+.+.
T Consensus 125 ~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 125 NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 55668889999986421 11234455566555 578999999999999999999988664
No 147
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.06 E-value=4.1e-07 Score=63.33 Aligned_cols=57 Identities=7% Similarity=-0.042 Sum_probs=32.0
Q ss_pred cCCCcEEeecCCCCCCCCCCH--HHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSR--ERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~--~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
+..+.+|+||+|+...+.+.. +++..++..+++.||++||+++.+++++|..+...+
T Consensus 167 ~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 167 KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp TSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred cCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 455678899999876556655 677888899999999999999999999998887543
No 148
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.05 E-value=1.3e-06 Score=61.40 Aligned_cols=53 Identities=6% Similarity=-0.068 Sum_probs=38.9
Q ss_pred CCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHH
Q psy17493 7 TKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~ 63 (101)
.++.+|+||+|+...+.+. ....++ .+.+++++||++|.||+++|..+.+.+.
T Consensus 331 ~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~~ 383 (462)
T 3geh_A 331 RPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQGIDSLETAILEIVQ 383 (462)
T ss_dssp SCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567789999997654443 111111 3568999999999999999999988664
No 149
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.05 E-value=1.1e-05 Score=55.24 Aligned_cols=55 Identities=15% Similarity=0.088 Sum_probs=40.7
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHH----HHHhCC---eEEEeccCCCCCHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQL----AIEYGI---KFMETSAKNSINVEDAFFTLARD 61 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~----a~~~~~---~~~etSAk~~~~V~~~F~~~~~~ 61 (101)
+.++.+|+||+||.+ ..+..+....| ++..|. .+|.+||++|.|+++++..+.+.
T Consensus 98 ~~piilV~NK~DLl~-~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 98 DNPILLVGNKADLLP-RSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp TSCEEEEEECGGGSC-TTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred CCCEEEEEEChhcCC-CccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 456678899999965 33444444444 556676 68999999999999999888653
No 150
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.03 E-value=2.8e-06 Score=56.51 Aligned_cols=57 Identities=11% Similarity=-0.013 Sum_probs=43.0
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGI-KFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~-~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
+.++.+++||.|+...+....+....+++.++. .++.+||+++.|++++|..+...+
T Consensus 116 ~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 116 KAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp SSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence 456778899999865233334555667666775 699999999999999999987543
No 151
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.00 E-value=1e-05 Score=58.66 Aligned_cols=56 Identities=21% Similarity=0.215 Sum_probs=43.3
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCe---EEEeccCCCCCHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIK---FMETSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~---~~etSAk~~~~V~~~F~~~~~~i~ 63 (101)
+.++.+++||+|+...+ ..+...++++.++.. ++++||++|.||+++|..+++.+.
T Consensus 123 ~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 123 DLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp TCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred CCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence 44567789999997533 344456777777764 999999999999999999887653
No 152
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.97 E-value=3.9e-06 Score=58.42 Aligned_cols=55 Identities=13% Similarity=0.169 Sum_probs=40.5
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHH-HHHHHHhCC-eEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERG-EQLAIEYGI-KFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~-~~~a~~~~~-~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
+.++.||+||+|+... + ..++ ..+. ..|+ .++++||++|.||+++|..+++.+.+
T Consensus 110 ~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 110 TVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp TCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhccc
Confidence 4567788999997521 1 1223 4443 4576 69999999999999999999987754
No 153
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.93 E-value=1.1e-06 Score=55.04 Aligned_cols=46 Identities=7% Similarity=-0.154 Sum_probs=30.0
Q ss_pred cCCCcEEeecCCCCCCCCCC------HHHHHHHHHHhCCeEEEeccCCCCCH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVS------RERGEQLAIEYGIKFMETSAKNSINV 51 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~------~~~~~~~a~~~~~~~~etSAk~~~~V 51 (101)
+..+.+|+||+|+...+.+. .+++..++..++..|+++||++|.+.
T Consensus 120 ~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~~ 171 (218)
T 1nrj_B 120 GIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEED 171 (218)
T ss_dssp CCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred CCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 45567889999998777665 56788888888899999999998763
No 154
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.93 E-value=1.1e-05 Score=56.07 Aligned_cols=57 Identities=9% Similarity=-0.084 Sum_probs=43.9
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
..+..|++||.|+... ...++...+.+..+..++.+||+++.||+++|..+++.+.+
T Consensus 269 ~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 269 RRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRS 325 (416)
T ss_dssp HSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred cCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHh
Confidence 4556778899998643 22344455555667899999999999999999999988764
No 155
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.91 E-value=1.3e-05 Score=58.15 Aligned_cols=56 Identities=16% Similarity=0.117 Sum_probs=42.8
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCC---eEEEeccCCCCCHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGI---KFMETSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~---~~~etSAk~~~~V~~~F~~~~~~i~ 63 (101)
+.++.+++||+|+...+ ..+...++++.+++ .++++||++|.||+++|+.+++.+.
T Consensus 125 ~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 125 DLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp TCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCCEEEEEeccCccccC--HHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 44567789999997533 23445667777776 4999999999999999999987654
No 156
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.89 E-value=4.1e-06 Score=57.83 Aligned_cols=55 Identities=7% Similarity=-0.054 Sum_probs=39.7
Q ss_pred CCcEEeecCCCCCCCC--CCHHHHHHHHHH---hCCeEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 8 KSKYIEVPNFVSSMPQ--VSRERGEQLAIE---YGIKFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 8 ~~~lv~nk~Dl~~~~~--v~~~~~~~~a~~---~~~~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
.+.+++||+|+.+... ...++...+.+. .++++|++||++|.||+++|+.+.+.+
T Consensus 139 ~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 139 NIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp CEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred cEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 4567799999864321 223445555554 357899999999999999999887654
No 157
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.85 E-value=2.4e-05 Score=53.94 Aligned_cols=55 Identities=15% Similarity=0.100 Sum_probs=37.1
Q ss_pred CCcEEeecCCCCCCCCC--CHHHHHHHHHHh---CCeEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 8 KSKYIEVPNFVSSMPQV--SRERGEQLAIEY---GIKFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 8 ~~~lv~nk~Dl~~~~~v--~~~~~~~~a~~~---~~~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
++.+++||+|+.+.... ..++...+.... ++++|++||++|.||+++|..+.+.+
T Consensus 131 ~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 131 NLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp CEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred CEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 46778999998642211 112222222222 46899999999999999999988654
No 158
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.85 E-value=3.1e-06 Score=56.38 Aligned_cols=53 Identities=11% Similarity=-0.058 Sum_probs=37.7
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHh-C-CeEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEY-G-IKFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~-~-~~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
+.++.+|+||+|+...+. +...+++.+ + ..++++||++|.||+++|..+++.+
T Consensus 117 ~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 117 KVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp TSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence 456778899999864322 022333332 3 5689999999999999999987654
No 159
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.74 E-value=1.7e-05 Score=53.81 Aligned_cols=57 Identities=9% Similarity=0.028 Sum_probs=38.0
Q ss_pred CCCcEEeecCCCCCCCCCCHHHHHHHHHH----------hCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 7 TKSKYIEVPNFVSSMPQVSRERGEQLAIE----------YGIKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~----------~~~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
....+|+||+|+....... .....+... ++.+++.+||++|.||+++|..+.+.+..
T Consensus 218 ~p~ivVlNK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 218 LADIVVVNKADGEHHKEAR-LAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp GCSEEEEECCCGGGHHHHH-HHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCcChhHHH-HHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3557789999985321111 111223222 25779999999999999999999876644
No 160
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.67 E-value=2e-05 Score=53.99 Aligned_cols=58 Identities=7% Similarity=-0.021 Sum_probs=41.5
Q ss_pred cCCC-cEEee-cCCCCCCCCCCH--HHHHHHHHHhC---CeEEE--eccCC---CCCHHHHHHHHHHHHHH
Q psy17493 6 NTKS-KYIEV-PNFVSSMPQVSR--ERGEQLAIEYG---IKFME--TSAKN---SINVEDAFFTLARDIKA 64 (101)
Q Consensus 6 ~~~~-~lv~n-k~Dl~~~~~v~~--~~~~~~a~~~~---~~~~e--tSAk~---~~~V~~~F~~~~~~i~~ 64 (101)
|.+. .++.| |+|+ +.+.+.. ++...+.+.++ +++++ +||++ +.||+++|..+.+.+..
T Consensus 111 ~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 111 GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 4444 66788 9998 4332322 45555655543 68999 99999 99999999999877643
No 161
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.64 E-value=4.9e-05 Score=48.86 Aligned_cols=30 Identities=20% Similarity=0.021 Sum_probs=24.8
Q ss_pred HHhC--CeEEEeccCCCCCHHHHHHHHHHHHH
Q psy17493 34 IEYG--IKFMETSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 34 ~~~~--~~~~etSAk~~~~V~~~F~~~~~~i~ 63 (101)
+.++ .+++++||+++.||+++|..+.+.+.
T Consensus 225 ~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 225 TEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 4444 47999999999999999999887654
No 162
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.62 E-value=1e-05 Score=56.27 Aligned_cols=53 Identities=11% Similarity=0.030 Sum_probs=36.4
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCCCHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGI-KFMETSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~-~~~etSAk~~~~V~~~F~~~~~~i~ 63 (101)
+.++.|++||+|+...+. ++..+. ..|+ .++++||++|.||+++|..+++.+.
T Consensus 111 ~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 111 KKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp CSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred CCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence 456678899999864321 111232 3565 6999999999999999999987664
No 163
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.62 E-value=1.8e-05 Score=55.74 Aligned_cols=46 Identities=11% Similarity=-0.068 Sum_probs=32.2
Q ss_pred CcEEeecCCCCCCCCCCHHHHHH----HHHHh-----CCeEEEeccCCCCCHHHH
Q psy17493 9 SKYIEVPNFVSSMPQVSRERGEQ----LAIEY-----GIKFMETSAKNSINVEDA 54 (101)
Q Consensus 9 ~~lv~nk~Dl~~~~~v~~~~~~~----~a~~~-----~~~~~etSAk~~~~V~~~ 54 (101)
+.+++||+|+.+.+....++... +.... +++|+++||++|.||+++
T Consensus 174 iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 174 LIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp EEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred EEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 67789999997644444444433 33333 357999999999999864
No 164
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.62 E-value=7.3e-05 Score=51.08 Aligned_cols=58 Identities=12% Similarity=-0.120 Sum_probs=40.9
Q ss_pred CCCcEEeecCCCCCCCCCC--HHHHHHHHHHh-C--CeEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy17493 7 TKSKYIEVPNFVSSMPQVS--RERGEQLAIEY-G--IKFMETSAKNSINVEDAFFTLARDIKAQ 65 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v~--~~~~~~~a~~~-~--~~~~etSAk~~~~V~~~F~~~~~~i~~~ 65 (101)
..+.+|+||+|+.+.. .. ...+..++..+ . ..++.+||+++.|++++|..+.+.+...
T Consensus 293 ~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 293 KPILVTLNKIDKINGD-LYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp CCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCch-HHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence 3456789999986432 11 12344455665 2 4689999999999999999998876553
No 165
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.58 E-value=5e-06 Score=54.56 Aligned_cols=55 Identities=16% Similarity=0.067 Sum_probs=36.9
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHH--HHHhC-CeEEEeccCCCCCHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQL--AIEYG-IKFMETSAKNSINVEDAFFTLAR 60 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~--a~~~~-~~~~etSAk~~~~V~~~F~~~~~ 60 (101)
+..+.+|+||+|+.+.+....+..... ....+ .+++++||++|.||+++|..+.+
T Consensus 192 ~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 192 GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp CSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred CCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 456678899999975444333322210 00112 35789999999999999999886
No 166
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.49 E-value=2.1e-05 Score=54.71 Aligned_cols=49 Identities=12% Similarity=-0.039 Sum_probs=36.4
Q ss_pred CcEEeecCCCCCCCC--C--CHHHHHHHHHHhC-----CeEEEeccCCCCCHHHHHHH
Q psy17493 9 SKYIEVPNFVSSMPQ--V--SRERGEQLAIEYG-----IKFMETSAKNSINVEDAFFT 57 (101)
Q Consensus 9 ~~lv~nk~Dl~~~~~--v--~~~~~~~~a~~~~-----~~~~etSAk~~~~V~~~F~~ 57 (101)
+.+++||+|+.+... + ..++...+++.++ ++++++||++|.||+++|..
T Consensus 160 iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 160 IVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp EEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred EEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence 567899999965211 1 2345667777777 67999999999999987654
No 167
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.40 E-value=0.00015 Score=47.92 Aligned_cols=54 Identities=9% Similarity=0.011 Sum_probs=39.4
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHH---HHHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQL---AIEYGIKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~---a~~~~~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
+.+..+|.||+||.+ .+..+.| .+..|.+++.+||+++.|+++++..+.+.+..
T Consensus 50 ~kp~ilVlNK~DL~~-----~~~~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 50 NKPRIMLLNKADKAD-----AAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp SSCEEEEEECGGGSC-----HHHHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred CCCEEEEEECcccCC-----HHHHHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 345578899999964 2333333 34457889999999999999999887766543
No 168
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.39 E-value=9.8e-05 Score=45.78 Aligned_cols=57 Identities=7% Similarity=-0.038 Sum_probs=39.6
Q ss_pred cCCCcEEeecCCCCCC--CCCCHHHHHHHHHHhC--CeEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSM--PQVSRERGEQLAIEYG--IKFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~--~~v~~~~~~~~a~~~~--~~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
+....+++||.|+... ++.....+..++...+ +.++.|||+++.|++++|..+.+.+
T Consensus 137 ~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 137 NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 3344567899997532 1222345566666554 4688999999999999999887654
No 169
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.39 E-value=0.00019 Score=52.50 Aligned_cols=27 Identities=11% Similarity=0.066 Sum_probs=23.9
Q ss_pred CeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 38 IKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 38 ~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
+++|++||++|.||+++|..+++.+..
T Consensus 248 ~pv~~~SA~~~~Gv~~Ll~~i~~~lp~ 274 (665)
T 2dy1_A 248 YPVALASGEREIGVLPLLELILEALPS 274 (665)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred eEEEEeecccCcCHHHHHHHHHHhCCC
Confidence 479999999999999999999987653
No 170
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.36 E-value=2.9e-05 Score=55.62 Aligned_cols=56 Identities=11% Similarity=-0.044 Sum_probs=36.7
Q ss_pred cCCCcEEeecCCCCCCC--CCCHHHHHHH---HHHhC--CeEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMP--QVSRERGEQL---AIEYG--IKFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~--~v~~~~~~~~---a~~~~--~~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
+.++.+++||+|+.+.+ .+.. +...+ +..++ ++||++||++|.||+++|..+...+
T Consensus 104 ~vPiIVViNKiDl~~~~~~~v~~-~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 104 HVPIVLAINKCDKAEADPEKVKK-ELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp TCCEEECCBSGGGTTTSCCSSSS-HHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred CCcEEEEEecccccccchHHHHH-HHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence 44566778999986422 2221 22111 22232 4799999999999999999987654
No 171
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.34 E-value=3.9e-05 Score=53.42 Aligned_cols=49 Identities=12% Similarity=0.117 Sum_probs=36.3
Q ss_pred CCcEEeecCCCCCCC------CCCHHHHHHHHHHhC-----CeEEEeccCCCCCHHHHHH
Q psy17493 8 KSKYIEVPNFVSSMP------QVSRERGEQLAIEYG-----IKFMETSAKNSINVEDAFF 56 (101)
Q Consensus 8 ~~~lv~nk~Dl~~~~------~v~~~~~~~~a~~~~-----~~~~etSAk~~~~V~~~F~ 56 (101)
.+.+++||+|+.+.. ....++...+++.++ ++|+++||++|.||.++|.
T Consensus 146 ~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 146 QLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred eEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 356789999986521 122456677777776 6799999999999987765
No 172
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.34 E-value=4.3e-05 Score=52.55 Aligned_cols=53 Identities=13% Similarity=0.060 Sum_probs=37.7
Q ss_pred cEEeecCCCCCCCC---CCHHHHHHHHHHhC-----CeEEEeccCCCCC----------HHHHHHHHHHHH
Q psy17493 10 KYIEVPNFVSSMPQ---VSRERGEQLAIEYG-----IKFMETSAKNSIN----------VEDAFFTLARDI 62 (101)
Q Consensus 10 ~lv~nk~Dl~~~~~---v~~~~~~~~a~~~~-----~~~~etSAk~~~~----------V~~~F~~~~~~i 62 (101)
.+++||+|+.+... ...++...+++.++ ++|+++||++|.| |+++|+.+.+.+
T Consensus 123 ivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 123 VVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp EEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 56799999864211 12246667777776 5899999999875 888888776544
No 173
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.27 E-value=1.2e-05 Score=57.14 Aligned_cols=55 Identities=16% Similarity=0.134 Sum_probs=36.1
Q ss_pred cCCCcEEeecCCCCCC--CCCCHH--HHHHHHHHhC--CeEEEeccCCCCCHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSM--PQVSRE--RGEQLAIEYG--IKFMETSAKNSINVEDAFFTLAR 60 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~--~~v~~~--~~~~~a~~~~--~~~~etSAk~~~~V~~~F~~~~~ 60 (101)
+.++.+++||+|+... ..+..+ +...+++.++ ++|+++||++|.||+++|+.++.
T Consensus 103 ~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 103 QVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp TCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred CceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 4556778999998632 122111 0011223343 68999999999999999998864
No 174
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.26 E-value=0.00052 Score=49.05 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=22.1
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHHH
Q psy17493 39 KFMETSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 39 ~~~etSAk~~~~V~~~F~~~~~~i~ 63 (101)
++|.+||++|.||+++|..+++.+.
T Consensus 252 PV~~gSA~~~~GV~~Lld~i~~~~p 276 (528)
T 3tr5_A 252 PIFFGSAINNFGVGELLDAFVKEAP 276 (528)
T ss_dssp EEEECBGGGTBSHHHHHHHHHHHSC
T ss_pred EEEeccccCCccHHHHHHHHHHhCC
Confidence 6889999999999999999987653
No 175
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.24 E-value=0.00024 Score=49.61 Aligned_cols=51 Identities=16% Similarity=0.079 Sum_probs=34.6
Q ss_pred cCC-CcEEeecCCCCCC------CCCCHHHHHHHHHHhC------CeEEEeccCCCCCHHHHHH
Q psy17493 6 NTK-SKYIEVPNFVSSM------PQVSRERGEQLAIEYG------IKFMETSAKNSINVEDAFF 56 (101)
Q Consensus 6 ~~~-~~lv~nk~Dl~~~------~~v~~~~~~~~a~~~~------~~~~etSAk~~~~V~~~F~ 56 (101)
|.+ +.+++||+|+... .....++...+++..| ++|+.+||++|.||++++.
T Consensus 154 ~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 154 GVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 444 5678999998531 1112234455666655 4699999999999999765
No 176
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.24 E-value=5e-05 Score=48.97 Aligned_cols=55 Identities=7% Similarity=0.042 Sum_probs=39.3
Q ss_pred CcEEee-cCCCCCCCCCCH-------HHHHHHHHHhCCe---E--EEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 9 SKYIEV-PNFVSSMPQVSR-------ERGEQLAIEYGIK---F--METSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 9 ~~lv~n-k~Dl~~~~~v~~-------~~~~~~a~~~~~~---~--~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
..++.| |.|+... .+.. .++..+++..+.. | +++||+++.||+++|..+++.+..
T Consensus 141 ~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 141 TIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp EEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 344455 9999743 2322 3455677777653 3 789999999999999999987754
No 177
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.00011 Score=53.43 Aligned_cols=47 Identities=13% Similarity=-0.065 Sum_probs=33.0
Q ss_pred CcEEeecCCCCCCCCCCHH----HHHHHHHHhC-----CeEEEeccCCCCCHHHHH
Q psy17493 9 SKYIEVPNFVSSMPQVSRE----RGEQLAIEYG-----IKFMETSAKNSINVEDAF 55 (101)
Q Consensus 9 ~~lv~nk~Dl~~~~~v~~~----~~~~~a~~~~-----~~~~etSAk~~~~V~~~F 55 (101)
+.+++||+|+.+.+....+ +...+....| ++||.+||++|.||+++.
T Consensus 308 iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 308 LIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp EEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred EEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence 6678999999754333333 3344455544 589999999999998764
No 178
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.23 E-value=2.4e-05 Score=51.17 Aligned_cols=56 Identities=7% Similarity=-0.052 Sum_probs=28.7
Q ss_pred cCCCcEEeecCCCCCCCCCC--HHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVS--RERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARD 61 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~--~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~ 61 (101)
+.++.+|+||+|+.....+. .+........+++.+|++||+++.|+++++..+...
T Consensus 144 ~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 144 KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 35567789999975322221 123344555678999999999999999999887653
No 179
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.18 E-value=6e-05 Score=52.99 Aligned_cols=48 Identities=19% Similarity=0.107 Sum_probs=34.1
Q ss_pred CcEEeecCCCCCCC------CCCHHHHHHHHHHh-C------CeEEEeccCCCCCHHHHHH
Q psy17493 9 SKYIEVPNFVSSMP------QVSRERGEQLAIEY-G------IKFMETSAKNSINVEDAFF 56 (101)
Q Consensus 9 ~~lv~nk~Dl~~~~------~v~~~~~~~~a~~~-~------~~~~etSAk~~~~V~~~F~ 56 (101)
+.+++||+|+.... ....++...+++.+ + ++|+++||++|.||+++|.
T Consensus 184 iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~ 244 (467)
T 1r5b_A 184 LVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 244 (467)
T ss_dssp EEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred EEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence 56789999985311 11223566777766 4 5699999999999998773
No 180
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.13 E-value=7.4e-05 Score=51.47 Aligned_cols=42 Identities=12% Similarity=0.060 Sum_probs=29.5
Q ss_pred CcEEeecCCCCCCCC---CCHHHHHHHHHHhC-----CeEEEeccCCCCC
Q psy17493 9 SKYIEVPNFVSSMPQ---VSRERGEQLAIEYG-----IKFMETSAKNSIN 50 (101)
Q Consensus 9 ~~lv~nk~Dl~~~~~---v~~~~~~~~a~~~~-----~~~~etSAk~~~~ 50 (101)
+.+++||+|+.+... ...++...+++.++ ++|+++||++|.|
T Consensus 131 iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 131 IVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp EEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred EEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence 456899999864211 11235666777766 5799999999987
No 181
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.11 E-value=4.6e-05 Score=51.66 Aligned_cols=57 Identities=5% Similarity=-0.046 Sum_probs=43.8
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
|..+.+|+||.|+.+......+.+..++..++.+|+++|++++.+|++.|..+....
T Consensus 203 ~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~~ 259 (360)
T 3t34_A 203 GDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAARK 259 (360)
T ss_dssp CTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHHH
T ss_pred CCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHHH
Confidence 456778899999977666666666666666778999999999999998876655443
No 182
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.07 E-value=0.00042 Score=53.86 Aligned_cols=54 Identities=11% Similarity=-0.033 Sum_probs=38.0
Q ss_pred CcEEeecCCCCCCCC---CCHHHHHHHHHHhC-----CeEEEeccCCC--------CCHHHHHHHHHHHH
Q psy17493 9 SKYIEVPNFVSSMPQ---VSRERGEQLAIEYG-----IKFMETSAKNS--------INVEDAFFTLARDI 62 (101)
Q Consensus 9 ~~lv~nk~Dl~~~~~---v~~~~~~~~a~~~~-----~~~~etSAk~~--------~~V~~~F~~~~~~i 62 (101)
+.+++||+|+.+... ...++...+++.++ ++|+++||++| .||+++|+.+...+
T Consensus 415 IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 415 IIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp EEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred EEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 356899999974221 12346667777776 57999999999 45888887776543
No 183
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.02 E-value=0.0027 Score=46.05 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=22.5
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHHH
Q psy17493 39 KFMETSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 39 ~~~etSAk~~~~V~~~F~~~~~~i~ 63 (101)
+++.+||++|.||++++..+...+.
T Consensus 193 pvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 193 SIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eEEEEeccCCCCchhHHHHHHhhcc
Confidence 7999999999999999999887654
No 184
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.96 E-value=0.0027 Score=42.77 Aligned_cols=57 Identities=7% Similarity=-0.036 Sum_probs=36.3
Q ss_pred CCCcEEeecCCCCCCCCCCH--HHHHHHHHHh-------CCeEEEeccCCCCCHHHHHHHHHHHHH
Q psy17493 7 TKSKYIEVPNFVSSMPQVSR--ERGEQLAIEY-------GIKFMETSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v~~--~~~~~~a~~~-------~~~~~etSAk~~~~V~~~F~~~~~~i~ 63 (101)
....+|+||+|+.....+.. ++........ ..+++.+||++|.||++++..+.+.+.
T Consensus 195 ~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 195 VADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred ccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 34567899999863211111 0111111111 356899999999999999999987654
No 185
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.86 E-value=0.0012 Score=41.95 Aligned_cols=57 Identities=11% Similarity=0.018 Sum_probs=39.3
Q ss_pred CCcEEeecCCCCCCCCCC------HHHHHHHHHHhCCeEEEeccCCC-----CCHHHHHHHHHHHHHH
Q psy17493 8 KSKYIEVPNFVSSMPQVS------RERGEQLAIEYGIKFMETSAKNS-----INVEDAFFTLARDIKA 64 (101)
Q Consensus 8 ~~~lv~nk~Dl~~~~~v~------~~~~~~~a~~~~~~~~etSAk~~-----~~V~~~F~~~~~~i~~ 64 (101)
.+.+|+||+|+...+.+. .+..+.+++..+..|+..+++.+ .+|.++|..+.+.+.+
T Consensus 147 ~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 147 FMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp GEEEEEECGGGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 567889999986544443 24678888999988887777654 6899999888776643
No 186
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=96.86 E-value=0.00032 Score=49.20 Aligned_cols=47 Identities=13% Similarity=-0.016 Sum_probs=33.5
Q ss_pred CcEEeecCCCCCCCC----CCHHHHHHHHHHhC-----CeEEEeccCCCCCHHHHH
Q psy17493 9 SKYIEVPNFVSSMPQ----VSRERGEQLAIEYG-----IKFMETSAKNSINVEDAF 55 (101)
Q Consensus 9 ~~lv~nk~Dl~~~~~----v~~~~~~~~a~~~~-----~~~~etSAk~~~~V~~~F 55 (101)
+.+++||+|+.+... ...++...+++.++ ++|+++||++|.||+++.
T Consensus 148 iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~ 203 (458)
T 1f60_A 148 LIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT 203 (458)
T ss_dssp EEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred EEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccc
Confidence 567899999863111 12345666777776 579999999999998653
No 187
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.85 E-value=0.00028 Score=49.33 Aligned_cols=52 Identities=10% Similarity=0.011 Sum_probs=31.6
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGI-KFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~-~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
+.++.||+||+|+.+.+ .....+. ..+. .++++||++|.||+++|..+.+.+
T Consensus 131 ~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 131 KKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHF 183 (456)
T ss_dssp CSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred CCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeecccccchHHHHHHHHhhc
Confidence 45567889999985322 1111111 2333 467999999999999999997654
No 188
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.72 E-value=0.0051 Score=41.62 Aligned_cols=54 Identities=7% Similarity=-0.010 Sum_probs=34.1
Q ss_pred CCcEEeecCCCCCCCCCCHHHHHHHHH----------HhCCeEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 8 KSKYIEVPNFVSSMPQVSRERGEQLAI----------EYGIKFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 8 ~~~lv~nk~Dl~~~~~v~~~~~~~~a~----------~~~~~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
...++.||+|+.+.... ......+.. .++.+++.+||++|.|+++++..+.+.+
T Consensus 214 ~~ivVlNK~Dl~~~~~~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 214 ADLVAVTKSDGDLIVPA-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp CSEEEECCCSGGGHHHH-HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEeeecCCCchhH-HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 34567899998521100 011122322 1245789999999999999999887754
No 189
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.66 E-value=0.0036 Score=42.23 Aligned_cols=53 Identities=2% Similarity=-0.095 Sum_probs=34.5
Q ss_pred cEEeecCCCCCCCCCCHHHHHHHHHHh----------CCeEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 10 KYIEVPNFVSSMPQVSRERGEQLAIEY----------GIKFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 10 ~lv~nk~Dl~~~~~v~~~~~~~~a~~~----------~~~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
.++.||.|+...........+.+.... ..+++.+||+++.|+++++..+.+..
T Consensus 197 ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 197 MIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp EEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 456799997432222222333443321 35678899999999999998887654
No 190
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.57 E-value=0.001 Score=43.48 Aligned_cols=52 Identities=6% Similarity=-0.142 Sum_probs=35.4
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLAR 60 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~ 60 (101)
+.+..+|.||+||.+... .+....+.+..|.++ .+||+++.|+++++..+..
T Consensus 46 ~k~~iivlNK~DL~~~~~--~~~~~~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 46 RKETIILLNKVDIADEKT--TKKWVEFFKKQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp TSEEEEEEECGGGSCHHH--HHHHHHHHHHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred CCCcEEEEECccCCCHHH--HHHHHHHHHHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 445678899999864211 112233444557888 9999999999999876643
No 191
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=96.57 E-value=0.00056 Score=49.47 Aligned_cols=44 Identities=14% Similarity=-0.010 Sum_probs=28.6
Q ss_pred CcEEeecCCCCCCCCCC----HHHHHHHH-HHhCC-----eEEEeccCCCCCHH
Q psy17493 9 SKYIEVPNFVSSMPQVS----RERGEQLA-IEYGI-----KFMETSAKNSINVE 52 (101)
Q Consensus 9 ~~lv~nk~Dl~~~~~v~----~~~~~~~a-~~~~~-----~~~etSAk~~~~V~ 52 (101)
+.+++||+|+.+..... ..+...+. +.+|+ +|+.+||++|.||+
T Consensus 318 iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 318 IVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp EEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred EEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 56789999986421111 12333344 33454 69999999999998
No 192
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.32 E-value=2.8e-05 Score=52.65 Aligned_cols=55 Identities=18% Similarity=0.090 Sum_probs=35.2
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHH--HHHHHhC-CeEEEeccCCCCCHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGE--QLAIEYG-IKFMETSAKNSINVEDAFFTLAR 60 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~--~~a~~~~-~~~~etSAk~~~~V~~~F~~~~~ 60 (101)
+..+.+|+||.|+.+......+... .+...++ ..++.+||+++.|++++|..+.+
T Consensus 197 ~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 197 GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp CTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred CCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 4566788999998654332121111 0111123 24678999999999999998876
No 193
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.99 E-value=0.0034 Score=42.87 Aligned_cols=51 Identities=6% Similarity=-0.094 Sum_probs=35.2
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHH---HhCCeEEEeccCCCCCHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAI---EYGIKFMETSAKNSINVEDAFFTL 58 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~---~~~~~~~etSAk~~~~V~~~F~~~ 58 (101)
|.+..||.||+||.+... .+....|.. ..|++.+.+||+++.|++++-..+
T Consensus 160 ~~~~iivlNK~DL~~~~~--~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 160 QVEPLIVLNKIDLLDDEG--MDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp TCEEEEEEECGGGCCHHH--HHHHHHHHHHHHTTTCCEEECBTTTTBTHHHHHHHH
T ss_pred CCCEEEEEECccCCCchh--HHHHHHHHHHHHhCCCcEEEEecCCCcCHHHHHHhc
Confidence 566778899999964211 112333433 457889999999999999886543
No 194
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=95.97 E-value=0.0026 Score=46.81 Aligned_cols=27 Identities=11% Similarity=0.068 Sum_probs=23.2
Q ss_pred CeEEEeccC--------------CCCCHHHHHHHHHHHHHH
Q psy17493 38 IKFMETSAK--------------NSINVEDAFFTLARDIKA 64 (101)
Q Consensus 38 ~~~~etSAk--------------~~~~V~~~F~~~~~~i~~ 64 (101)
..+|.+||+ ++.||+++|..+.+.+..
T Consensus 285 ~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 285 ERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp GTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 368999999 999999999999876643
No 195
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.89 E-value=0.0087 Score=39.32 Aligned_cols=58 Identities=7% Similarity=-0.023 Sum_probs=35.0
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCC------CCCHHHHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKN------SINVEDAFFTLARDIK 63 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~------~~~V~~~F~~~~~~i~ 63 (101)
+..+.+|+||.|+........+.........+..|+++|+++ +.||++++..+...+.
T Consensus 198 ~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 198 GKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK 261 (315)
T ss_dssp CSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence 455678899999875443222222210011235688887765 6888998887766543
No 196
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.64 E-value=0.00067 Score=45.43 Aligned_cols=52 Identities=12% Similarity=0.029 Sum_probs=34.6
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHH---HHhCCeEEEeccCCCCCHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLA---IEYGIKFMETSAKNSINVEDAFFTL 58 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a---~~~~~~~~etSAk~~~~V~~~F~~~ 58 (101)
|.+..||.||+||.+.... .+....+. +..|.+.+.+||+++.|++++|...
T Consensus 117 ~~~~vivlnK~DL~~~~~~-~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~~~ 171 (307)
T 1t9h_A 117 DIQPIICITKMDLIEDQDT-EDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHF 171 (307)
T ss_dssp TCEEEEEEECGGGCCCHHH-HHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGGGG
T ss_pred CCCEEEEEECCccCchhhh-HHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHhhc
Confidence 4566788999999753210 01133333 3457889999999999988877543
No 197
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.94 E-value=0.02 Score=36.75 Aligned_cols=58 Identities=9% Similarity=-0.044 Sum_probs=38.9
Q ss_pred CCCcEEeecCCCCCCCCC------CHHHHHHHHHHhCCeEEEeccCC-----CCCHHHHHHHHHHHHHH
Q psy17493 7 TKSKYIEVPNFVSSMPQV------SRERGEQLAIEYGIKFMETSAKN-----SINVEDAFFTLARDIKA 64 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v------~~~~~~~~a~~~~~~~~etSAk~-----~~~V~~~F~~~~~~i~~ 64 (101)
..+.|++||.|+.+.... ..+..+.+.+..|..|+..+++. +.||+++|..+.+.+.+
T Consensus 140 ~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 140 WMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp GEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 445678899999653211 11345777888887766555544 58999999988776653
No 198
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.93 E-value=0.0066 Score=41.57 Aligned_cols=55 Identities=15% Similarity=0.009 Sum_probs=40.7
Q ss_pred ccCCCcEEeecCCCC--CC-CCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q psy17493 5 INTKSKYIEVPNFVS--SM-PQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLA 59 (101)
Q Consensus 5 ~~~~~~lv~nk~Dl~--~~-~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~ 59 (101)
...++.+++||.|.+ +. +..-.+....+++.+|++++.+||++..+|.+++..-.
T Consensus 200 t~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~~~ 257 (368)
T 2dby_A 200 TAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGEEA 257 (368)
T ss_dssp GGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHHHH
T ss_pred hcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchHHH
Confidence 345677889998632 22 13456777889999999999999999888887776543
No 199
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=93.08 E-value=0.1 Score=33.45 Aligned_cols=56 Identities=4% Similarity=-0.165 Sum_probs=35.5
Q ss_pred ccCCCcEEeecC-CCCCCCCCCHHHHHHHHHH--hC--CeEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 5 INTKSKYIEVPN-FVSSMPQVSRERGEQLAIE--YG--IKFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 5 ~~~~~~lv~nk~-Dl~~~~~v~~~~~~~~a~~--~~--~~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
.|..+-+.+||. |+. ...+..+....-.- .. ...+.|||++|+|+.+.++=++..+
T Consensus 161 ~gapLLVlANKqqDlp--~Ams~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 161 SGRPLLVLSCISQGDV--KRMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp SCSCEEEEEEESSTTS--CBCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred CCCeEEEEeCCCcCcc--CCCCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 455555667985 663 45565544322111 11 2357899999999999998887544
No 200
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=92.40 E-value=0.23 Score=33.32 Aligned_cols=56 Identities=4% Similarity=-0.166 Sum_probs=36.1
Q ss_pred ccCCCcEEeec-CCCCCCCCCCHHHHHHHHHH--hC--CeEEEeccCCCCCHHHHHHHHHHHH
Q psy17493 5 INTKSKYIEVP-NFVSSMPQVSRERGEQLAIE--YG--IKFMETSAKNSINVEDAFFTLARDI 62 (101)
Q Consensus 5 ~~~~~~lv~nk-~Dl~~~~~v~~~~~~~~a~~--~~--~~~~etSAk~~~~V~~~F~~~~~~i 62 (101)
.|..+-+.+|| -|+. ...+..+....-.- .. ...+.|||++|+|+.+.++=++..+
T Consensus 246 ~~apLLVfANKkQDlp--~Ams~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l 306 (312)
T 3l2o_B 246 SGRPLLVLSCISQGDV--KRMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV 306 (312)
T ss_dssp TTCCEEEEEEESSTTS--CBCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred CCCeEEEEeCCccccc--CCCCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence 45556666787 4774 45555444322111 11 2357899999999999999888765
No 201
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=91.11 E-value=0.33 Score=35.82 Aligned_cols=26 Identities=12% Similarity=-0.022 Sum_probs=22.4
Q ss_pred CeEEEeccCCCCCHHHHHHHHHHHHH
Q psy17493 38 IKFMETSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 38 ~~~~etSAk~~~~V~~~F~~~~~~i~ 63 (101)
.+.|..||++|.||+.++..++..+.
T Consensus 256 ~Pv~~gSA~~~~Gv~~LLd~i~~~lP 281 (691)
T 1dar_A 256 TPVFLGSALKNKGVQLLLDAVVDYLP 281 (691)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHSC
T ss_pred eEEEEeecccCcCHHHHHHHHHHhCC
Confidence 46899999999999999999887653
No 202
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=89.70 E-value=0.025 Score=39.02 Aligned_cols=45 Identities=20% Similarity=0.095 Sum_probs=31.2
Q ss_pred CCCcEEeecCCCCCCCCCCHHHHHHHHHH---hCCeEEEeccCCCCCHHHHHH
Q psy17493 7 TKSKYIEVPNFVSSMPQVSRERGEQLAIE---YGIKFMETSAKNSINVEDAFF 56 (101)
Q Consensus 7 ~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~---~~~~~~etSAk~~~~V~~~F~ 56 (101)
.++.+++||.|+.. .+....+.+. .+..++.+||+.+.++.+++.
T Consensus 215 kP~i~v~NK~D~~~-----~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 215 KPMVIAANKADAAS-----DEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp SCEEEEEECGGGSC-----HHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred CCEEEEEeCccccc-----hHHHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence 55677899999751 2333333333 377899999999999977543
No 203
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=88.94 E-value=1.2 Score=32.94 Aligned_cols=27 Identities=15% Similarity=0.027 Sum_probs=23.4
Q ss_pred CeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 38 IKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 38 ~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
++.|..||++|.||+.+++.++..+..
T Consensus 262 ~Pv~~gSa~~~~Gv~~LLd~i~~~lPs 288 (704)
T 2rdo_7 262 ILVTCGSAFKNKGVQAMLDAVIDYLPS 288 (704)
T ss_pred eEEEEeecccCccHHHHHHHHHHHCCC
Confidence 468999999999999999999887653
No 204
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=88.76 E-value=0.082 Score=39.59 Aligned_cols=53 Identities=17% Similarity=0.023 Sum_probs=34.4
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHH----hC-CeEEEeccCCCCCHHHHHHHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIE----YG-IKFMETSAKNSINVEDAFFTLAR 60 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~----~~-~~~~etSAk~~~~V~~~F~~~~~ 60 (101)
|..+.+|.||.|+.+.......... .+. .+ ..++.+||++|.|+++++..+.+
T Consensus 217 g~pvIlVlNKiDlv~~~~~~~~il~--~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 217 GQRTIGVITKLDLMDEGTDARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp CSSEEEEEECTTSSCTTCCSHHHHT--TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred CCCEEEEEeCcccCCcchhhHHHHH--HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 4567888999998754333221111 011 12 23567999999999999988875
No 205
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=87.68 E-value=0.17 Score=36.20 Aligned_cols=47 Identities=13% Similarity=-0.143 Sum_probs=30.1
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCe-----EEEeccCCCCCHHHH
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIK-----FMETSAKNSINVEDA 54 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~-----~~etSAk~~~~V~~~ 54 (101)
+.++.+++||.|+.... ..+....+.+.++.. |..+||+++.||.++
T Consensus 134 ~ipiivviNK~Dl~~~~--~~~~~~~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl 185 (529)
T 2h5e_A 134 DTPILTFMNKLDRDIRD--PMELLDEVENELKIGCAPITWPIGCGKLFKGVYHL 185 (529)
T ss_dssp TCCEEEEEECTTSCCSC--HHHHHHHHHHHHCCEEEESEEEESCGGGCCEEEET
T ss_pred CCCEEEEEcCcCCcccc--HHHHHHHHHHHhCCCccceecceecccCcceeeeh
Confidence 45667789999986432 234455666666643 556788777776544
No 206
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=84.68 E-value=2.8 Score=30.96 Aligned_cols=27 Identities=7% Similarity=-0.025 Sum_probs=22.5
Q ss_pred CeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy17493 38 IKFMETSAKNSINVEDAFFTLARDIKA 64 (101)
Q Consensus 38 ~~~~etSAk~~~~V~~~F~~~~~~i~~ 64 (101)
.+.|..||++|.||+.++..+++.+..
T Consensus 254 ~Pv~~gSA~~~~Gv~~LLd~i~~~lPs 280 (693)
T 2xex_A 254 YPVLCGTAFKNKGVQLMLDAVIDYLPS 280 (693)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred eeEEEeecccCcCHHHHHHHHHHHCCC
Confidence 368899999999999999888876643
No 207
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=84.23 E-value=1 Score=30.76 Aligned_cols=42 Identities=17% Similarity=0.039 Sum_probs=30.6
Q ss_pred cCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCC
Q psy17493 6 NTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKN 47 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~ 47 (101)
.-++.+++|+.|.......-......++..++++++.+||+.
T Consensus 199 ~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 199 LKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp TSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred CCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 455677899988543223345677788888899999999874
No 208
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=74.23 E-value=2.6 Score=24.95 Aligned_cols=19 Identities=0% Similarity=-0.295 Sum_probs=13.8
Q ss_pred cCCCcEEeecCCCCCCCCC
Q psy17493 6 NTKSKYIEVPNFVSSMPQV 24 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~~~~~v 24 (101)
+..+.+|+||+|+...+.+
T Consensus 156 ~~p~ilv~nK~Dl~~~~~~ 174 (193)
T 2ged_A 156 GIDILIACNKSELFTARPP 174 (193)
T ss_dssp CCCEEEEEECTTSTTCCCH
T ss_pred CCCEEEEEEchHhcCCCCH
Confidence 4556788999999765554
No 209
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=69.98 E-value=7 Score=22.08 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHhCCeEEEeccC
Q psy17493 24 VSRERGEQLAIEYGIKFMETSAK 46 (101)
Q Consensus 24 v~~~~~~~~a~~~~~~~~etSAk 46 (101)
-+.++|..||+.+|+.|.-.-.+
T Consensus 67 ~skE~AiayAek~G~~y~V~ep~ 89 (108)
T 2lju_A 67 TTRELAIAYAVAHKIDYTVLQDN 89 (108)
T ss_dssp SSHHHHHHHHHHTTCEEEEECSS
T ss_pred CCHHHHHHHHHHcCCEEEEecCC
Confidence 46799999999999998765444
No 210
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=68.68 E-value=7 Score=22.00 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHhCCeEEEeccCC
Q psy17493 24 VSRERGEQLAIEYGIKFMETSAKN 47 (101)
Q Consensus 24 v~~~~~~~~a~~~~~~~~etSAk~ 47 (101)
-+.++|..||+.+|+.|.-.-.+.
T Consensus 59 ~skE~AiayAek~G~~y~V~ep~~ 82 (106)
T 2jya_A 59 ETQEQAEAYAQRKGIEYRVILPKE 82 (106)
T ss_dssp SSHHHHHHHHHHHTCEEEECCCTT
T ss_pred CCHHHHHHHHHHcCCEEEEeCCCc
Confidence 467999999999999987665544
No 211
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=62.19 E-value=4.2 Score=29.02 Aligned_cols=26 Identities=12% Similarity=0.004 Sum_probs=22.3
Q ss_pred CeEEEeccCCCCCHHHHHHHHHHHHH
Q psy17493 38 IKFMETSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 38 ~~~~etSAk~~~~V~~~F~~~~~~i~ 63 (101)
.++|..||++|.||+.+++.++..+.
T Consensus 252 ~Pv~~gSA~~~~Gv~~LLd~i~~~~P 277 (529)
T 2h5e_A 252 TPVFFGTALGNFGVDHMLDGLVEWAP 277 (529)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred eEEEeeecccCCCHHHHHHHHHHhCC
Confidence 47899999999999999998877553
No 212
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=54.34 E-value=12 Score=19.77 Aligned_cols=27 Identities=7% Similarity=0.134 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHHhCCeEEEeccCCC
Q psy17493 22 PQVSRERGEQLAIEYGIKFMETSAKNS 48 (101)
Q Consensus 22 ~~v~~~~~~~~a~~~~~~~~etSAk~~ 48 (101)
-.++..+|...|++.++...++|....
T Consensus 27 Gv~~~~eAl~~A~e~~LDLVevsp~a~ 53 (78)
T 1tif_A 27 GIKSKQEALEIAARRNLDLVLVAPNAK 53 (78)
T ss_dssp EEEEHHHHHHHHHHTTCEEEEEETTSS
T ss_pred CcccHHHHHHHHHHcCCCEEEECCCCC
Confidence 358999999999999999999998643
No 213
>3tnt_A SARS coronavirus main protease; 3C-like protease, hydrolase-hydrolase inhibitor CO; HET: G85; 1.59A {Sars coronavirus} PDB: 1uk2_A 1uk3_A 1uk4_A 1z1i_A 2a5a_A 1uj1_A* 2bx3_A 2bx4_A 2c3s_A 2a5i_A 2gt7_A* 2gx4_A* 2gz7_A* 2gz8_A* 2gz9_A 2duc_A 2hob_A* 2v6n_A* 2z3c_A* 2z3d_A* ...
Probab=45.18 E-value=14 Score=24.56 Aligned_cols=44 Identities=18% Similarity=0.159 Sum_probs=34.4
Q ss_pred CCCCCCHHHHHHHHHHhCCeEEE---------eccCCCCCHHHHHHHHHHHHH
Q psy17493 20 SMPQVSRERGEQLAIEYGIKFME---------TSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 20 ~~~~v~~~~~~~~a~~~~~~~~e---------tSAk~~~~V~~~F~~~~~~i~ 63 (101)
....++.++-..||..++..-++ -+||||..|+.+...|-+.+.
T Consensus 221 ~~~~~sv~dfN~WA~~ngft~~~~~~~~~~~~Laa~TGVsVe~lL~aI~~ll~ 273 (306)
T 3tnt_A 221 NRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQ 273 (306)
T ss_dssp CSCCCCHHHHHHHHHHTTBCCCCHHHHHHTHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred eccEecHHHHHHHHHhcCCccccccHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 45678899999999999976554 468999999998877765444
No 214
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=42.60 E-value=14 Score=23.38 Aligned_cols=21 Identities=10% Similarity=-0.067 Sum_probs=14.5
Q ss_pred CCcEEeecCCCCCCCCCCHHH
Q psy17493 8 KSKYIEVPNFVSSMPQVSRER 28 (101)
Q Consensus 8 ~~~lv~nk~Dl~~~~~v~~~~ 28 (101)
.+.+|+||+|+...+.++.++
T Consensus 156 ~iivV~nK~Dl~~~~~~~~~~ 176 (270)
T 1h65_A 156 KAIVALTHAQFSPPDGLPYDE 176 (270)
T ss_dssp GEEEEEECCSCCCGGGCCHHH
T ss_pred CEEEEEECcccCCcCCCCHHH
Confidence 567889999997555444443
No 215
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=42.13 E-value=21 Score=22.50 Aligned_cols=21 Identities=19% Similarity=0.094 Sum_probs=14.2
Q ss_pred CCcEEeecCCCCCCCCCCHHH
Q psy17493 8 KSKYIEVPNFVSSMPQVSRER 28 (101)
Q Consensus 8 ~~~lv~nk~Dl~~~~~v~~~~ 28 (101)
.+.+|+||+|+...+....++
T Consensus 153 ~~ivv~nK~Dl~~~~~~~~e~ 173 (262)
T 3def_A 153 KTLLVLTHAQFSPPDELSYET 173 (262)
T ss_dssp GEEEEEECTTCCCSTTCCHHH
T ss_pred CEEEEEeCcccCCCCCccHHH
Confidence 456789999996555555443
No 216
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=40.96 E-value=8.5 Score=27.41 Aligned_cols=48 Identities=6% Similarity=-0.202 Sum_probs=30.7
Q ss_pred cEEeecCCCCCCCCCCHHHHHHHHHHhCCeE------------------EEeccCCCCC-HHHHHHHHHHH
Q psy17493 10 KYIEVPNFVSSMPQVSRERGEQLAIEYGIKF------------------METSAKNSIN-VEDAFFTLARD 61 (101)
Q Consensus 10 ~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~------------------~etSAk~~~~-V~~~F~~~~~~ 61 (101)
-+|.||.|...... .+.......+.+. +.+||.+|.| |+++++.+.+.
T Consensus 244 gvVlNK~D~~~~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 244 SVIVTKLDGHAKGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CEEEECTTSCCCCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred EEEEeCCccccchH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 57889999763221 1223334455432 2379999999 99988888654
No 217
>2jry_A R11.6, I-superfamily conotoxin R11A; IOTA-conotoxin; HET: HYP DPN; NMR {Conus radiatus} PDB: 2p4l_A* 2jtu_A*
Probab=38.20 E-value=8.6 Score=18.18 Aligned_cols=10 Identities=10% Similarity=0.185 Sum_probs=7.1
Q ss_pred CCCCcccccc
Q psy17493 91 PPSWLSKCSI 100 (101)
Q Consensus 91 ~~~~cc~Cc~ 100 (101)
....||+||.
T Consensus 14 ~hsdCCgCC~ 23 (46)
T 2jry_A 14 YHADCCNCCL 23 (46)
T ss_dssp CSTTSSSEEE
T ss_pred cccceeccCC
Confidence 4467888874
No 218
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=36.98 E-value=40 Score=22.50 Aligned_cols=43 Identities=12% Similarity=-0.008 Sum_probs=31.5
Q ss_pred cEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q psy17493 10 KYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTL 58 (101)
Q Consensus 10 ~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~ 58 (101)
-+|..|.|.. .++..+.|++++++.+.|++.+...+..+-..+
T Consensus 83 ~IIltrg~~~------peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l 125 (314)
T 1ko7_A 83 AIIVTRDLEP------PEELIEAAKEHETPLITSKIATTQLMSRLTTFL 125 (314)
T ss_dssp CEEECTTCCC------CHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHH
T ss_pred EEEEeCCCCC------CHHHHHHHHHCCCeEEEECCchhHHHHHHHHHH
Confidence 3455666642 456778899999999999999887777764443
No 219
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=35.06 E-value=22 Score=25.52 Aligned_cols=26 Identities=15% Similarity=0.046 Sum_probs=22.0
Q ss_pred CeEEEeccCCCCCHHHHHHHHHHHHH
Q psy17493 38 IKFMETSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 38 ~~~~etSAk~~~~V~~~F~~~~~~i~ 63 (101)
.+.|-.||++|.||+.++..+++.+.
T Consensus 269 ~PV~~gSA~~~~Gv~~LLd~iv~~~P 294 (548)
T 3vqt_A 269 TPVFFGSAINNFGVREMLDMFVEFAP 294 (548)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHSC
T ss_pred ceeeecccccCcCHHHHHHHHHHhCC
Confidence 46789999999999999988876554
No 220
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=33.84 E-value=8.7 Score=22.24 Aligned_cols=9 Identities=22% Similarity=0.449 Sum_probs=0.0
Q ss_pred CCCccccccC
Q psy17493 92 PSWLSKCSIL 101 (101)
Q Consensus 92 ~~~cc~Cc~~ 101 (101)
+.+|| |.||
T Consensus 118 k~~C~-C~Il 126 (126)
T 1se9_A 118 MNKCV-CSVM 126 (126)
T ss_dssp ----------
T ss_pred CCCce-EEeC
Confidence 34455 8775
No 221
>3u02_A Putative transcription-associated protein TFIIS; structural genomics, PSI-biology; HET: TPO MSE CIT MES; 2.40A {Pyrococcus furiosus dsm 3638}
Probab=32.31 E-value=30 Score=22.42 Aligned_cols=36 Identities=14% Similarity=0.161 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q psy17493 22 PQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLA 59 (101)
Q Consensus 22 ~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~ 59 (101)
..++.++|..+|+..|+.++. -++|.||=-+.-.+.
T Consensus 116 ~vvt~~~A~~~a~~~gi~~~~--~~~grGiIGALAAiG 151 (252)
T 3u02_A 116 EHVTIEEAEHVARKVNAEVYK--FKLGRGIIGGLAAIG 151 (252)
T ss_dssp SCCCHHHHHHHHHHTTCEEET--CCSSTHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHCCcEEEe--cCCCCeeeehhhhcc
Confidence 468899999999999998763 388999877765554
No 222
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=31.86 E-value=71 Score=21.88 Aligned_cols=42 Identities=7% Similarity=-0.131 Sum_probs=27.9
Q ss_pred cCCCcEEeecCCCC-C-CCCCCHHHHHHHHHHhC--CeEEEeccCC
Q psy17493 6 NTKSKYIEVPNFVS-S-MPQVSRERGEQLAIEYG--IKFMETSAKN 47 (101)
Q Consensus 6 ~~~~~lv~nk~Dl~-~-~~~v~~~~~~~~a~~~~--~~~~etSAk~ 47 (101)
.-.+.++.|+.|.. . ...--.....+++..++ ..++.+||+.
T Consensus 224 ~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~ 269 (392)
T 1ni3_A 224 AKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAF 269 (392)
T ss_dssp GSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHH
T ss_pred cCceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHH
Confidence 45567788987732 0 11222566778888776 7899999985
No 223
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=28.61 E-value=53 Score=23.97 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=21.7
Q ss_pred CeEEEeccCCCCCHHHHHHHHHHHHH
Q psy17493 38 IKFMETSAKNSINVEDAFFTLARDIK 63 (101)
Q Consensus 38 ~~~~etSAk~~~~V~~~F~~~~~~i~ 63 (101)
.+.|..||+++.||+.++..++..+.
T Consensus 213 ~Pv~~gSa~~~~Gv~~LLd~i~~~~p 238 (638)
T 3j25_A 213 FPLYHGSAKSNIGIDNLIEVITNKFY 238 (638)
T ss_dssp CCCCCCCSTTCCSHHHHHHHHHHSCC
T ss_pred ccccccccccCCCchhHhhhhhcccc
Confidence 56788999999999999988876543
No 224
>4mt2_A Metallothionein isoform II; 2.00A {Rattus rattus} SCOP: g.46.1.1 PDB: 2mrt_A 1mrt_A 1mhu_A 1dfs_A 2mhu_A 1dft_A 2mrb_A
Probab=26.34 E-value=21 Score=17.81 Aligned_cols=8 Identities=13% Similarity=0.272 Sum_probs=5.3
Q ss_pred CCCccccc
Q psy17493 92 PSWLSKCS 99 (101)
Q Consensus 92 ~~~cc~Cc 99 (101)
+++||+||
T Consensus 31 KKscCsCC 38 (62)
T 4mt2_A 31 KKSCCSCC 38 (62)
T ss_dssp CCCSSTTS
T ss_pred cccccccc
Confidence 45677776
No 225
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=26.14 E-value=1.2e+02 Score=20.61 Aligned_cols=46 Identities=15% Similarity=-0.029 Sum_probs=29.0
Q ss_pred CCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHH
Q psy17493 8 KSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLAR 60 (101)
Q Consensus 8 ~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~etSAk~~~~V~~~F~~~~~ 60 (101)
+..++.||.|.. +.++...+.+ ...++..|+..+.|++.+-..+.+
T Consensus 251 p~i~v~nKid~~-----~~eele~l~~--~~~~~~is~~~e~gLd~Li~~~y~ 296 (376)
T 4a9a_A 251 PAIYVLNKIDSL-----SIEELELLYR--IPNAVPISSGQDWNLDELLQVMWD 296 (376)
T ss_dssp CEEEEEECGGGS-----CHHHHHHHTT--STTEEECCTTTCTTHHHHHHHHHH
T ss_pred ceEEEEeccccc-----CHHHHHHHhc--ccchhhhhhhhcccchhHHHHHHH
Confidence 455677888852 3444433322 134889999999999876555443
No 226
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=22.82 E-value=45 Score=22.27 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=14.6
Q ss_pred HHHHHhCCeEEEeccCC---------CCCHHHHHHHHHHHHHHHH
Q psy17493 31 QLAIEYGIKFMETSAKN---------SINVEDAFFTLARDIKAQT 66 (101)
Q Consensus 31 ~~a~~~~~~~~etSAk~---------~~~V~~~F~~~~~~i~~~~ 66 (101)
..|...+.+.|+.++.+ ..+..+.|..+|..+++..
T Consensus 305 ~~aq~~~~Pi~~l~~~~~~~g~~~~~~~~~~~~~~~la~~i~~~~ 349 (361)
T 3pg5_A 305 ATAQDVHAPIMELSSSDRVRGAQINQRNAYAEKINSVAANVYKAL 349 (361)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCeEECchhcCCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677888887765 4578899999999998764
No 227
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=21.74 E-value=60 Score=18.72 Aligned_cols=38 Identities=8% Similarity=-0.049 Sum_probs=21.4
Q ss_pred ccCCCcEEeecCCCCCCCCCCHHHHHHHHHHhCCeEEE
Q psy17493 5 INTKSKYIEVPNFVSSMPQVSRERGEQLAIEYGIKFME 42 (101)
Q Consensus 5 ~~~~~~lv~nk~Dl~~~~~v~~~~~~~~a~~~~~~~~e 42 (101)
...++++|.|-.+-........-..+..|-.++++++-
T Consensus 93 ~~g~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~T 130 (143)
T 2yvq_A 93 RDGSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLLT 130 (143)
T ss_dssp HTTSCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEEC
T ss_pred HCCCceEEEECCCCCCcCCccHHHHHHHHHHhCCCeEc
Confidence 34678888885442111111122345668888998883
No 228
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=20.85 E-value=56 Score=13.58 Aligned_cols=10 Identities=20% Similarity=0.338 Sum_probs=6.4
Q ss_pred CCCCcccccc
Q psy17493 91 PPSWLSKCSI 100 (101)
Q Consensus 91 ~~~~cc~Cc~ 100 (101)
-..|||+-|+
T Consensus 16 mgdwccgrci 25 (32)
T 4b2v_A 16 MGDWCCGRCI 25 (32)
T ss_dssp TCCCCSSEEE
T ss_pred hcchhhhHHH
Confidence 4468887564
No 229
>1dl0_A J-atracotoxin-HV1C; neurotoxin, insecticidal, cystine knot, vicinal disulfide; NMR {Synthetic} SCOP: g.3.6.2
Probab=20.77 E-value=26 Score=15.27 Aligned_cols=7 Identities=14% Similarity=0.339 Sum_probs=3.9
Q ss_pred CCccccc
Q psy17493 93 SWLSKCS 99 (101)
Q Consensus 93 ~~cc~Cc 99 (101)
..||-||
T Consensus 11 aaccpcc 17 (37)
T 1dl0_A 11 AACCPCC 17 (37)
T ss_dssp CSSCCCC
T ss_pred ccccCCC
Confidence 3466665
Done!