RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17493
(101 letters)
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 86.9 bits (216), Expect = 4e-23
Identities = 24/71 (33%), Positives = 36/71 (50%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHV 82
VS ERG QLA G +F E SAK++INV+ F L I + + L+ ++P G
Sbjct: 130 VVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQ 189
Query: 83 KSSEPNRKPPS 93
+++ P
Sbjct: 190 GPQLTDQQAPP 200
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 85.8 bits (213), Expect = 1e-22
Identities = 21/76 (27%), Positives = 33/76 (43%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHV 82
V + ++ A + F+ETSA +S NVEDAF T+AR IK ++ K
Sbjct: 130 VVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKG 189
Query: 83 KSSEPNRKPPSWLSKC 98
+ + + C
Sbjct: 190 NVNLKGQSLTNTGGCC 205
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 85.0 bits (211), Expect = 2e-22
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGI 80
V ++ A GI F+ETSAKN+ NVE +F T+A +IK + A K +
Sbjct: 138 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNV 195
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 84.6 bits (210), Expect = 5e-22
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHV 82
QVS E + A ++ + ++ETSAK NV+ FF L R+I+ +K+E S G
Sbjct: 136 QVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIR---ARKMEDSKEKNGKKKR 192
Query: 83 KSSEPNRKPPSWLSKCSIL 101
KS + +C IL
Sbjct: 193 KSLAKRIR-----ERCCIL 206
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 82.4 bits (204), Expect = 4e-21
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPP 76
+V+ + +LA +YGI + ETSA NVE A TL I + E+ +E + P
Sbjct: 158 EVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQCVEKTQIP 211
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 81.5 bits (202), Expect = 4e-21
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEAS 73
V E +LA +YGI + ETSA N N+ A L I + E+ ++ S
Sbjct: 144 AVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMERSVDKS 194
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 81.5 bits (202), Expect = 5e-21
Identities = 37/53 (69%), Positives = 47/53 (88%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNP 75
QVS+ERGE+LA++YGIKFMETSAK +INVE+AFFTLARDIKA+ +K +A+
Sbjct: 130 QVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWKATAA 182
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 82.0 bits (203), Expect = 5e-21
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKK--LEASNPPKGGI 80
V+ ++GE LA E GI F+E+SAKN NV + FFTLA+ I+ + + + N +G I
Sbjct: 141 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGNGKEGNI 200
Query: 81 HVKSSEPNRKPPS 93
+ S N +
Sbjct: 201 SINSGSGNSSKSN 213
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 80.7 bits (200), Expect = 1e-20
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHV 82
+V + +A E+ FMETSAK + NV++ F L +
Sbjct: 130 EVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDG--------- 180
Query: 83 KSSEPNRKPPSWLSKCSIL 101
K S ++ KC+++
Sbjct: 181 KRSGKQKRTDRVKGKCTLM 199
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 80.4 bits (199), Expect = 2e-20
Identities = 18/71 (25%), Positives = 29/71 (40%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHV 82
V + A + + F+ETSA +S NVE+AF + +I +K A
Sbjct: 127 AVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPG 186
Query: 83 KSSEPNRKPPS 93
+ PP+
Sbjct: 187 NNVVDISVPPT 197
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 78.8 bits (195), Expect = 4e-20
Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKK 69
V RE GE+LA EYG+ FMETSAK +NV+ AF +A+++K ++ K
Sbjct: 133 VVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKA 179
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 79.2 bits (196), Expect = 4e-20
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 14/79 (17%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHV 82
V ++ + LA YGI F+ETSAK V+DAF+TL R+I+ EK
Sbjct: 125 TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEK-------------- 170
Query: 83 KSSEPNRKPPSWLSKCSIL 101
S + +K +KC I+
Sbjct: 171 MSKDGKKKKKKSKTKCVIM 189
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 79.2 bits (196), Expect = 5e-20
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNP 75
+VS++R E+ + + ++ETSAK S NVE F LA + ++ + +N
Sbjct: 148 EVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNV 200
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 78.9 bits (195), Expect = 6e-20
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQT 66
V GE+LA+ YG F ETSAK+ N+ +A LAR++K +T
Sbjct: 156 CVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKRT 199
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 78.4 bits (194), Expect = 6e-20
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEAS 73
V E + A + GI+ ETSAK ++NVE+ F + + + L
Sbjct: 130 VVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 180
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 78.0 bits (193), Expect = 1e-19
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKK 69
+VS E G LA K +ETSA N + F R I+ + +
Sbjct: 147 EVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRN 193
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 78.0 bits (193), Expect = 1e-19
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKK 69
+V E A G+ F+ETSA +S NVE AF T+ ++I A+ K+
Sbjct: 147 EVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 77.3 bits (191), Expect = 2e-19
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKL 70
V RE GE A E+G+ FMETSAK + NVE+AF A++I + ++ L
Sbjct: 143 DVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGL 190
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 76.8 bits (190), Expect = 2e-19
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65
+VS E G LA K +ETSA N + F R I+ +
Sbjct: 126 EVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 76.9 bits (190), Expect = 3e-19
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEK 68
V E G +LA + G +F E SAK +INV+ F L I + +
Sbjct: 144 VVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNE 189
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 77.0 bits (190), Expect = 5e-19
Identities = 20/75 (26%), Positives = 27/75 (36%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHV 82
V E + A E + F ETSA NS NV+ AF L I + K +
Sbjct: 135 AVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSANGNA 194
Query: 83 KSSEPNRKPPSWLSK 97
+ P L+
Sbjct: 195 NGASAPNGPTISLTP 209
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 75.7 bits (187), Expect = 5e-19
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEK 68
V+ ++GE LA E GI F+E+SAKN NV + FFTLA+ I+ + +
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 76.6 bits (189), Expect = 6e-19
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKK 69
+VS G A+ + KF+ETSA NV++ F + R ++ + + K
Sbjct: 162 EVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSK 208
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 75.6 bits (187), Expect = 6e-19
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPP 76
QV R + + + E SAK +NV++AF L R ++ K E PP
Sbjct: 131 QVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR----KYQEQELPP 180
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 76.1 bits (188), Expect = 6e-19
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKG 78
+V R G + A ++ + F+E SAK V+ AF L I QT E+ N G
Sbjct: 137 EVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKII-QTPGLWESENQNSG 191
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 76.1 bits (188), Expect = 6e-19
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKL 70
V ++ +LA YGI F+ETSAK VEDAF+TL R+I+ KKL
Sbjct: 142 TVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKL 189
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 75.2 bits (186), Expect = 7e-19
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65
+VS + G A+ + KF+ETSA NV+ F + R I+ +
Sbjct: 123 EVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 76.1 bits (188), Expect = 7e-19
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65
V ++ A GI F+ETSAKN+ NVE +F T+A +IK +
Sbjct: 155 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 197
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 76.2 bits (188), Expect = 8e-19
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHV 82
QVS E GE+ A E + F+ETSAK NV+ F +A + + + I +
Sbjct: 138 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQ---DRSREDMIDI 194
Query: 83 KSSEPNRKPPS 93
K +P +P S
Sbjct: 195 KLEKPQEQPVS 205
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 75.7 bits (187), Expect = 8e-19
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGG 79
+V+ + A E + F+ETSA NVE+AF AR I + E +P + G
Sbjct: 132 EVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESG--ELDPERMG 186
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 75.7 bits (187), Expect = 9e-19
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKK 69
+V+ + A E + F+ETSA NVE+AF AR I + +
Sbjct: 147 EVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSG 193
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 74.8 bits (185), Expect = 1e-18
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65
+ E E LA ++F TS K +NV + F LA +
Sbjct: 126 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 74.9 bits (185), Expect = 1e-18
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKK 69
+VS E G A+ + KF+ETSA NV + F + R ++ +
Sbjct: 128 EVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRDS 174
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 74.4 bits (184), Expect = 2e-18
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65
QVS E + A ++ + ++ETSAK NV+ FF L R+I+A+
Sbjct: 126 QVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 74.6 bits (184), Expect = 2e-18
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65
V E+G+ LA + G F E SAK +I+V AF L I +
Sbjct: 145 VVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDK 187
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 74.0 bits (183), Expect = 2e-18
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
+VS G LA E+G FMETSAK+ V++ F + R +
Sbjct: 125 EVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 74.1 bits (183), Expect = 3e-18
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQT 66
+V E LA + FMETSAK + NV++ F L K +T
Sbjct: 126 EVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRT 169
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 74.1 bits (183), Expect = 3e-18
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKK 69
QVS E + A ++ + ++ETSAK NV+ FF L R+I+A+ +
Sbjct: 140 QVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMED 186
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 73.7 bits (182), Expect = 3e-18
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 124 TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 73.8 bits (182), Expect = 5e-18
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKK 69
+V G++LA +G FME+SA+ + + F + ++I
Sbjct: 146 EVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVENSY 192
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 73.0 bits (180), Expect = 6e-18
Identities = 11/47 (23%), Positives = 17/47 (36%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKK 69
+ E+ + E G SAK +V F +A +I K
Sbjct: 132 TIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNK 178
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 73.0 bits (180), Expect = 1e-17
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAK---NSINVEDAFFTLARDIKAQ 65
QV + ++ A + + ETSAK ++ +VE F TLA +K+
Sbjct: 144 QVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSH 189
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 72.6 bits (179), Expect = 1e-17
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASN 74
+S E G+ LA + F+E+SAK + D F + + + + +
Sbjct: 128 VISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGACSQGKS 179
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 72.2 bits (178), Expect = 1e-17
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V+ E +Q A E G+ F+E SAK NVEDAF A+ I
Sbjct: 137 DVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 72.2 bits (178), Expect = 1e-17
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
V + A + G+ F+ETSA +S NVE AF T+ +I
Sbjct: 151 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 72.3 bits (178), Expect = 2e-17
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 24 VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHVK 83
++ + I + ETSAK +INVE AF T+AR+ Q E ++E N I +
Sbjct: 135 ATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ-ETEVELYNEFPEPIKLD 193
Query: 84 SSEPNRKPPSWLSKCS 99
+E + CS
Sbjct: 194 KNERAKASA---ESCS 206
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 71.9 bits (177), Expect = 4e-17
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAK-NSINVEDAFFTLARDIKAQTEKKLEASN 74
QV + + A + F + SA + + F ++A E K+ A
Sbjct: 150 QVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYEDKVAAFQ 202
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 71.1 bits (175), Expect = 6e-17
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 23 QVSRERGEQLAIEYGIK-FMETSAKNSINVEDAFFTLARDIKAQTEKKLEA 72
+VS + LA Y I +ETSAK+S NVE+AF +A ++ + L +
Sbjct: 151 EVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGPLFS 201
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 70.2 bits (173), Expect = 6e-17
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
VS + E A G K TSAK + +E+ F L + +
Sbjct: 128 HVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 70.7 bits (174), Expect = 7e-17
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAK-NSINVEDAFFTLARDIKAQTEKK 69
QVS E GE+LA E F E SA N+ + F+ L R+++ + +
Sbjct: 149 QVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMVQ 196
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 70.3 bits (173), Expect = 7e-17
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKK 69
+V+ E + A E G+ FMETSAK + NV++ F+ +AR + +
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTE 180
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 70.3 bits (173), Expect = 7e-17
Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAK-NSINVEDAFFTLARDIKAQ 65
+V+R++G+++A +Y I ++ETSAK +NV+ F L R I+ Q
Sbjct: 140 KVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 70.7 bits (174), Expect = 7e-17
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKK 69
+V + ++ A G +ETSAKN+IN+E+ F ++R I +
Sbjct: 145 EVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHE 191
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 70.3 bits (173), Expect = 9e-17
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 23 QVSRERGEQLAIEYG-IKFMETSAKNSINVEDAFFTLARDIKAQTEK 68
+ R +L+ + + ET A +NVE F +A+ + A +K
Sbjct: 138 VIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRKK 184
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 70.3 bits (173), Expect = 1e-16
Identities = 16/44 (36%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 23 QVSRERGEQLAIEY-GIKFMETSAKNSINVEDAFFTLARDIKAQ 65
+++R++GE+ A + G++F E SAK++ NV++ F L DI +
Sbjct: 148 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 70.8 bits (174), Expect = 1e-16
Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEAS---NPPKGG 79
++S++ ++ ++ E SAK + N F LAR + + ++ P +
Sbjct: 134 KISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPTEVN 193
Query: 80 IHVKSSEPNRK 90
S E ++
Sbjct: 194 YDYHSPEESKY 204
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 69.8 bits (172), Expect = 1e-16
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
+V + A F+ETSAKN+IN+ + F ++R I
Sbjct: 128 EVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 69.9 bits (172), Expect = 1e-16
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 23 QVSRERGEQLAIEYG-IKFMETSAKNSINVEDAFFTLARDIKAQTE 67
VS + ++LA G I TSAKN+INV+ AF +AR Q +
Sbjct: 136 IVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQNQ 181
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 69.5 bits (171), Expect = 1e-16
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + A + + FMETSAK S+NV + F +A+ +
Sbjct: 128 AVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 69.5 bits (171), Expect = 2e-16
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 23 QVSRERGEQLAIEYG-IKFMETSAKNSINVEDAFFTLARDIKAQTE 67
QVS E + + G + ETSAK++ NV AF R + A +
Sbjct: 132 QVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATED 177
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 69.5 bits (171), Expect = 2e-16
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
QVS E GE+ A E + F+ETSAK NV+ F +A +
Sbjct: 136 QVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 68.3 bits (168), Expect = 3e-16
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 23 QVSRERGEQLAIEY-GIKFMETSAKNSINVEDAFFTLARDIK 63
V +E+G+ LA ++ F+E+SAK+ INV + F+ L R I
Sbjct: 125 VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 68.3 bits (167), Expect = 7e-16
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
QV ++ A + + F++TSAK N+++ F+ LA +I
Sbjct: 163 QVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIY 203
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 67.6 bits (166), Expect = 1e-15
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAK-NSINVEDAFFTLARDIKAQ 65
QV++ G LA +G F E SA + +V+ F R+ + +
Sbjct: 144 QVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARRE 187
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 67.3 bits (165), Expect = 1e-15
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHV 82
+VS G A+ + KF+ETSA NV++ F + R ++ + + K E +
Sbjct: 131 EVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSK-EKNERRLAYQKR 189
Query: 83 KSS 85
K S
Sbjct: 190 KES 192
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 66.9 bits (163), Expect = 5e-15
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
+ L+ + ++ +ETSA++++NV+ AF TL + I
Sbjct: 215 YIRDAHTFALS-KKNLQVVETSARSNVNVDLAFSTLVQLID 254
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 62.3 bits (152), Expect = 2e-13
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEAS---NPPK 77
+ + + + +++ + SAK++ N E F LAR + + A PP+
Sbjct: 134 RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPE 191
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 56.5 bits (137), Expect = 2e-11
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 23 QVSRERGEQL-AIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKK 69
V R L A + ET A +NV+ F +A+ + +++
Sbjct: 127 VVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQ 174
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 54.8 bits (132), Expect = 6e-11
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65
+V+RE GE+LA E G+ F ETSAK NV D F + I +
Sbjct: 128 KVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 49.7 bits (119), Expect = 8e-09
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 16/78 (20%)
Query: 24 VSRERGEQLAIEYG-IKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHV 82
++ +GE+L + G ++E S+K NV+ F T + PP+
Sbjct: 139 ITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK----------VVLQPPR----- 183
Query: 83 KSSEPNRKPPSWLSKCSI 100
+ P R+ S CSI
Sbjct: 184 RKEVPRRRKNHRRSGCSI 201
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 48.8 bits (116), Expect = 2e-08
Identities = 7/43 (16%), Positives = 15/43 (34%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65
+ +++ + +F S KN VE +L +
Sbjct: 167 NIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHP 209
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 43.1 bits (102), Expect = 2e-06
Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 24 VSRERGEQLAIEYG-IKFMETSAKNSINVEDAFFTLARD-IKAQTEKK 69
V+++ G+ L + G + ++E S+ I + + F + K
Sbjct: 147 VTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNKPVPK 194
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 41.6 bits (98), Expect = 5e-06
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 24 VSRERGEQLAIEYG-IKFMETSAKNSINVEDAFFTLAR 60
++ +GE+L G ++E S+K+ NV+ F R
Sbjct: 140 ITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIR 177
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 41.3 bits (97), Expect = 7e-06
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 20 SMPQVSRERGEQLAIEYG-IKFMETSAKNSINVEDAFFTLAR 60
+ V+ RG+++A G + ++E SA+ NV F A
Sbjct: 164 GLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAE 205
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 40.8 bits (96), Expect = 1e-05
Identities = 4/52 (7%), Positives = 14/52 (26%), Gaps = 5/52 (9%)
Query: 22 PQVSRERGEQLAIEYGI-----KFMETSAKNSINVEDAFFTLARDIKAQTEK 68
+ ++L + G + + S + T+ + +
Sbjct: 131 KACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNFKIR 182
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 39.3 bits (92), Expect = 4e-05
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 24 VSRERGEQLAIEYG-IKFMETSAKNSINVEDAF 55
V E G +A ++E SAK V + F
Sbjct: 159 VRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 39.0 bits (91), Expect = 6e-05
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 24 VSRERGEQLAIEYG-IKFMETSAKNSINVEDAFFTLAR 60
V + G +A+ ++E SAK V + F T R
Sbjct: 159 VRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATR 196
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 39.0 bits (91), Expect = 6e-05
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 20 SMPQVSRERGEQLAIEYG-IKFMETSAKNSINVEDAFFTLARD-IKAQTEKK 69
+ ++ +G +A E G +K++E SA ++ F R + KK
Sbjct: 135 KLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKK 186
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 38.6 bits (90), Expect = 7e-05
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 20 SMPQVSRERGEQLAIEYG-IKFMETSAKNSINVEDAFFTLAR 60
+ ++ +G +A E G +K++E SA ++ F R
Sbjct: 160 KLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 201
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 38.6 bits (90), Expect = 7e-05
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 24 VSRERGEQLAIEYG-IKFMETSAKNSINVEDAFFTLARDIKAQTEKK 69
V E + LA E ++E SA N+++ F ++ +
Sbjct: 154 VPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSDTQ 200
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 35.3 bits (81), Expect = 0.001
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 24 VSRERGEQLAIEYG-IKFMETSAKNSINVEDAF 55
++ +G +A E G +K++E SA ++ F
Sbjct: 289 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 35.2 bits (81), Expect = 0.001
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 24 VSRERGEQLAIEYG-IKFMETSAKNSINVEDAFFTLAR 60
+ E+G++LA E G ++E SA ++ F
Sbjct: 152 ICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII 189
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 34.3 bits (79), Expect = 0.002
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 24 VSRERGEQLAIEYG-IKFMETSAKNSIN-VEDAF 55
VS ++G +A + G ++E SA S N V D F
Sbjct: 141 VSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 34.3 bits (79), Expect = 0.002
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 24 VSRERGEQLAIEYG-IKFMETSAKNSIN-VEDAF 55
VS ++G +A + G ++E SA S N V D F
Sbjct: 162 VSYDQGANMAKQIGAATYIECSALQSENSVRDIF 195
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.024
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 11/37 (29%)
Query: 65 QTEKKLEASNPPKGGIHVKSSEPNRKPPSWLS-KCSI 100
Q KKL+AS +K + P L+ K ++
Sbjct: 20 QALKKLQAS--------LKLYADDSAPA--LAIKATM 46
Score = 29.1 bits (64), Expect = 0.17
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 38 IKFMETSAKNSINVEDAFFTLARDIKAQTE 67
+K ++ S K + +D+ LA IKA E
Sbjct: 22 LKKLQASLK--LYADDSAPALA--IKATME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.15
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 10/59 (16%)
Query: 26 RERGE--QLAIEYGIKFMETSAKNSINV--------EDAFFTLARDIKAQTEKKLEASN 74
RG Q+A+ +IN ++A + + +T +E N
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN 1845
>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B
1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B*
1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B*
1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ...
Length = 1224
Score = 26.0 bits (57), Expect = 2.6
Identities = 5/34 (14%), Positives = 15/34 (44%)
Query: 52 EDAFFTLARDIKAQTEKKLEASNPPKGGIHVKSS 85
+ F L +DI ++ +E ++ + + +
Sbjct: 418 KTLFKKLTKDIFRYMQRTVEEAHDFNMKLAINAK 451
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.0 bits (56), Expect = 3.2
Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPKGGIHV 82
V + E L I Y F+ + I E ++ + + +L N +V
Sbjct: 78 MVQKFVEEVLRINYK--FL----MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 83 KSSEPNRKPPSWLSK 97
+P K L +
Sbjct: 132 SRLQPYLKLRQALLE 146
>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1210
Score = 24.5 bits (53), Expect = 8.9
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 52 EDAFFTLARDIKAQTEKKLEASNPPKGGIHVKSS 85
F + RD+ +K +E + + VKS+
Sbjct: 404 RMLFRKMTRDVYKYMQKCVETNREFNLTLAVKSN 437
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.127 0.354
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,375,757
Number of extensions: 65713
Number of successful extensions: 182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 92
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.3 bits)