RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17493
(101 letters)
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 56.8 bits (136), Expect = 4e-12
Identities = 23/42 (54%), Positives = 31/42 (73%)
Query: 22 PQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V RE GE+LA EYG+ FMETSAK +NV+ AF +A+++K
Sbjct: 128 RVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 169
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 55.9 bits (134), Expect = 1e-11
Identities = 36/48 (75%), Positives = 44/48 (91%)
Query: 21 MPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEK 68
QVS+ERGE+LA++YGIKFMETSAK +INVE+AFFTLARDIKA+ +K
Sbjct: 126 KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 173
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 54.0 bits (128), Expect = 5e-11
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 1 MEIQINTKSKYIEVPNFVSSMPQ--VSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTL 58
+ I V N + VS + G A+ + KF+ETSA NV+ F +
Sbjct: 98 RRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 157
Query: 59 ARDIKAQTEKK 69
R I+ + + K
Sbjct: 158 VRQIRLRRDSK 168
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 54.1 bits (129), Expect = 6e-11
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 26 RERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLE 71
+ +LA +YGI + ETSA NVE A TL I + E+ +E
Sbjct: 141 ERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQCVE 186
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 52.2 bits (124), Expect = 2e-10
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 21 MPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
V+ E +Q A E G+ F+E SAK NVEDAF A+ I
Sbjct: 124 QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 52.2 bits (124), Expect = 2e-10
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 21 MPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKL 70
V RE GE A E+G+ FMETSAK + NVE+AF A++I + ++ L
Sbjct: 123 RRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGL 172
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 51.1 bits (121), Expect = 5e-10
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 21 MPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
+VS G LA E+G FMETSAK+ V++ F + R +
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 51.1 bits (121), Expect = 6e-10
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 21 MPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65
QVS E + A ++ + ++ETSAK NV+ FF L R+I+A+
Sbjct: 124 KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 50.9 bits (121), Expect = 7e-10
Identities = 22/45 (48%), Positives = 31/45 (68%)
Query: 21 MPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65
V+ ++GE LA E GI F+E+SAKN NV + FFTLA+ I+ +
Sbjct: 121 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 165
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 50.4 bits (119), Expect = 1e-09
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 21 MPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQT 66
+V E LA + FMETSAK + NV++ F L K +T
Sbjct: 123 SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRT 168
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 50.4 bits (119), Expect = 1e-09
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 21 MPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKA 64
+ +V + A F+ETSAKN+IN+ + F ++R I +
Sbjct: 124 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 167
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 50.1 bits (118), Expect = 2e-09
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 21 MPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTE 67
+VS G A+ + KF+ETSA NV++ F + R ++ + +
Sbjct: 126 CREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRD 172
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 50.0 bits (118), Expect = 2e-09
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 20 SMPQVSRERGEQLAIEYG-IKFMETSAKNSINVEDAFFTLARDI 62
+ E+G++LA E G ++E SA ++ F I
Sbjct: 139 KEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 182
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 49.6 bits (117), Expect = 2e-09
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 21 MPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
V + + LA YGI ++ETSAK VEDAF+TL R+I+
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 49.6 bits (117), Expect = 2e-09
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 21 MPQVSRERGEQLAIE-YGIKFMETSAKNSINVEDAFFTLARDIKAQTEKK 69
V R L + + ET A +NV+ F +A+ + +++
Sbjct: 123 PRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQ 172
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 49.1 bits (116), Expect = 3e-09
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 21 MPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
+V R G + A ++ + F+E SAK V+ AF L I
Sbjct: 127 NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 168
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 48.4 bits (114), Expect = 6e-09
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 21 MPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
VS + E A G K TSAK + +E+ F L + +
Sbjct: 123 ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 164
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 48.1 bits (113), Expect = 7e-09
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 21 MPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEK 68
QV R + + + E SAK +NV++AF L R ++ E+
Sbjct: 126 QRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQ 173
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 48.1 bits (113), Expect = 8e-09
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 19 SSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
+V+RE GE+LA E G+ F ETSAK NV D F + I
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 48.0 bits (113), Expect = 9e-09
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 19 SSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
+ QVS E GE+ A E + F+ETSAK NV+ F +A +
Sbjct: 118 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 48.0 bits (113), Expect = 9e-09
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 25 SRERGEQLAIEYG-IKFMETSAKNSINVEDAFFTLARDIKA 64
S E + + G + ETSAK++ NV AF R + A
Sbjct: 133 STEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 173
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 47.8 bits (112), Expect = 1e-08
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 21 MPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
+S E G+ LA + F+E+SAK + D F + + +
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAE 166
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 47.4 bits (111), Expect = 1e-08
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 20 SMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
+ E E LA ++F TS K +NV + F LA
Sbjct: 120 DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 47.3 bits (111), Expect = 2e-08
Identities = 3/44 (6%), Positives = 13/44 (29%)
Query: 20 SMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
++ ++S+ ++ A + + +K
Sbjct: 133 TVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 176
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 46.6 bits (109), Expect = 3e-08
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 17 FVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTE 67
+ QV++E G+QLA + + +ME SAK +NV+ AF L R I+ E
Sbjct: 121 DLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKFQE 171
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 46.6 bits (109), Expect = 4e-08
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 21 MPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPK 77
++ + I + ETSAK +INVE AF T+AR+ Q + + P+
Sbjct: 126 RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPE 182
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 46.4 bits (109), Expect = 4e-08
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 31 QLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKK 69
+ A E + F+ETSA NVE+AF AR I + E
Sbjct: 135 RFAQENELMFLETSALTGENVEEAFVQCARKILNKIESG 173
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 46.1 bits (108), Expect = 4e-08
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 21 MPQVSRERGEQLAIEY-GIKFMETSAKNSINVEDAFFTLARDIK 63
V +E+G+ LA ++ F+E+SAK+ INV + F+ L R I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 46.2 bits (108), Expect = 4e-08
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 26 RERGEQLAIEYGIKFMETSAK---NSINVEDAFFTLA 59
+ ++ A + + ETSAK ++ +VE F TLA
Sbjct: 129 TDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 45.4 bits (106), Expect = 7e-08
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 21 MPQVSRERGEQLAIEYGIKFMETSAK-NSINVEDAFFTLARDIKAQ 65
QVS E GE+LA E F E SA N+ + F+ L R+++ +
Sbjct: 121 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 166
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 45.4 bits (106), Expect = 8e-08
Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAK-NSINVEDAFFTLARDIKAQ 65
+V+R++G+++A +Y I ++ETSAK +NV+ F L R I+ Q
Sbjct: 126 KVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 169
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 45.4 bits (106), Expect = 9e-08
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 21 MPQVSRERGEQLAIEYG-IKFMETSAKNSINVEDAFFTLARDI 62
V E G +A G +ME SAK V + F R
Sbjct: 133 QEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 175
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 45.0 bits (105), Expect = 1e-07
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 20 SMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
+ V + + A + + FMETSAK S+NV + F +A+ +
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 44.9 bits (105), Expect = 1e-07
Identities = 4/44 (9%), Positives = 13/44 (29%)
Query: 20 SMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
++ + G + + A + + + L + K
Sbjct: 130 KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 45.0 bits (105), Expect = 1e-07
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 20 SMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKL 70
S +VS+E + + +SA + + L IK E++L
Sbjct: 135 SASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK---EEQL 182
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 44.6 bits (104), Expect = 2e-07
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 20 SMPQVSRERGEQLAIEYG-IKFMETSAKNSINVEDAFFTLARDI 62
+ ++ +G +A E G +K++E SA ++ F R +
Sbjct: 135 KLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 44.5 bits (104), Expect = 2e-07
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 21 MPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKK 69
+ V + A + + F+ETSA +S NVE+AF + +I +K
Sbjct: 124 LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK 172
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 44.4 bits (104), Expect = 2e-07
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 21 MPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65
+VS++R E+ + + ++ETSAK S NVE F LA + ++
Sbjct: 125 RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 169
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 44.3 bits (103), Expect = 2e-07
Identities = 11/52 (21%), Positives = 22/52 (42%)
Query: 14 VPNFVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65
N V + + + + +++ + SAK++ N E F LAR +
Sbjct: 113 CGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 164
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 44.1 bits (103), Expect = 2e-07
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 31 QLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65
QLA G +F E SAK++INV+ F L I +
Sbjct: 135 QLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 43.5 bits (101), Expect = 4e-07
Identities = 4/40 (10%), Positives = 13/40 (32%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
+++ + G T A + + + L+ +
Sbjct: 121 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 43.2 bits (100), Expect = 5e-07
Identities = 7/46 (15%), Positives = 20/46 (43%)
Query: 20 SMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65
+ +++ G + + +TSA +++A L +K++
Sbjct: 123 TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 168
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 43.0 bits (100), Expect = 6e-07
Identities = 4/43 (9%), Positives = 14/43 (32%)
Query: 20 SMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
+++ + + SA V+D + +++
Sbjct: 134 PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 42.8 bits (99), Expect = 8e-07
Identities = 6/41 (14%), Positives = 13/41 (31%)
Query: 23 QVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIK 63
++ + + I S K N++ L + K
Sbjct: 124 ELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 164
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 41.9 bits (97), Expect = 2e-06
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 21 MPQVSRERGEQLAIEY-GIKFMETSAKNSINVEDAFFTLARDIKAQTEKK 69
++ E E+LA + +K++E SA +++ F E K
Sbjct: 134 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPK 183
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 41.2 bits (95), Expect = 3e-06
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 38 IKFMETSAKNSINVEDAFFTLARDIKAQTE 67
I TSAKN+INV+ AF +AR Q +
Sbjct: 146 IPLFLTSAKNAINVDTAFEEIARSALQQNQ 175
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 38.5 bits (88), Expect = 3e-05
Identities = 6/46 (13%), Positives = 13/46 (28%)
Query: 20 SMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQ 65
S + + + SA ++ L DI ++
Sbjct: 120 SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 38.5 bits (88), Expect = 3e-05
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 23 QVSRERGEQLAIEYGI-KFMETSAKNSIN-VEDAFFTLARDI 62
VS ++G +A + G ++E SA S N V D F
Sbjct: 135 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 176
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 38.3 bits (88), Expect = 3e-05
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 36 YGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPPK 77
+ F+ETSA +S NVEDAF T+AR IK ++ K
Sbjct: 141 NKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQK 182
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 34.7 bits (78), Expect = 6e-04
Identities = 4/40 (10%), Positives = 16/40 (40%)
Query: 21 MPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLAR 60
+ ++ +++ + ++ S +AF L++
Sbjct: 126 LGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 33.1 bits (74), Expect = 0.002
Identities = 4/36 (11%), Positives = 10/36 (27%)
Query: 27 ERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDI 62
+ ++ S + F +A+ I
Sbjct: 150 SVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 25.3 bits (54), Expect = 1.6
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 38 IKFMETSAKNSINVEDAFFTLARDI 62
I T A ++ N+ F + I
Sbjct: 170 IYSHFTCATDTENIRFVFAAVKDTI 194
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 24.1 bits (51), Expect = 3.5
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 38 IKFMETSAKNSINVEDAFFTLARDI 62
I T A ++ NV+ F + I
Sbjct: 167 IYTHFTCATDTKNVQFVFDAVTDVI 191
>d1zcza2 c.97.1.4 (A:158-452) AICAR transformylase domain of
bifunctional purine biosynthesis enzyme ATIC {Thermotoga
maritima [TaxId: 2336]}
Length = 295
Score = 23.9 bits (51), Expect = 4.3
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 17 FVSSMPQVSRERGEQLAIEYGIKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEASNPP 76
Q SR+R A AK ++ DAFF ++ + ++A P
Sbjct: 210 VGIGSGQPSRKR----AAWIATVMAGEKAKGAVAASDAFFPFPDSLEILAQAGVKAVVAP 265
Query: 77 KGGI 80
G I
Sbjct: 266 LGSI 269
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 23.5 bits (49), Expect = 7.1
Identities = 4/35 (11%), Positives = 12/35 (34%)
Query: 38 IKFMETSAKNSINVEDAFFTLARDIKAQTEKKLEA 72
+ + SA + + L + ++L+
Sbjct: 192 VSIIPISAITGEGIPELLTMLMGLAQQYLREQLKI 226
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.127 0.354
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 335,335
Number of extensions: 12451
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 58
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.5 bits)