BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17497
(806 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R7X2|SR140_PONAB U2 snRNP-associated SURP motif-containing protein OS=Pongo abelii
GN=U2SURP PE=2 SV=1
Length = 1028
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/752 (51%), Positives = 509/752 (67%), Gaps = 72/752 (9%)
Query: 5 TMKKQIAEQKLKAFSIGSMG-AKRTLSKKEQEEQKKKEQEAAAAQAFEEFVATFQENPAA 63
+ + + E KLKAFSIG M AKRTLSKKEQEE KKKE E AAA+ +EEF+A F+ +
Sbjct: 71 NLSRPLLENKLKAFSIGKMSTAKRTLSKKEQEELKKKEDEKAAAEIYEEFLAAFEGSDGN 130
Query: 64 KTNKVWVKAGTYDAGRRREDTSEK-GKLYKPQSRLQEDKDS-SASKAEEYARLLGDKKTE 121
K K +V+ G +A + +T EK GK+YKP SR + K+ + S E LL E
Sbjct: 131 KV-KTFVRGGVVNAAKEEHETDEKRGKIYKPSSRFADQKNPPNQSSNERPPSLLV---IE 186
Query: 122 SQRLKKNNKIDIKKKSNLEMFKEELKMIQEEREERHKYKGVLKGVYSEEAEPPSA----- 176
+++ KKKSNLE+FKEELK IQEER+ERHK KG L EPP +
Sbjct: 187 TKKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLSRF-----EPPQSDSDGQ 241
Query: 177 ------------IAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLAS 224
++ + GS D GDP TTNLYLGN+NP++ E+ L + FGR+GPLAS
Sbjct: 242 RRSMDAPSRRNRSSVLDDYAPGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLAS 301
Query: 225 IKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVPIPSYP 284
+KIMWPR+DEE+AR RNCGFVAFMNR+D ERALK LNGK + S+EMKLGWGK+VPIP +P
Sbjct: 302 VKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPPHP 361
Query: 285 IYIPPKMLELTVPPPPSGLPFNAQPASKDKH-RIPKLRPGEPLTREDLDRLDQILNQAYV 343
IYIPP M+E T+PPPPSGLPFNAQP + K+ P L P P +ED ++ L+QA V
Sbjct: 362 IYIPPSMMEHTLPPPPSGLPFNAQPRERLKNPNAPMLPP--PKNKEDFEK---TLSQAIV 416
Query: 344 KVVVPTDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKM 403
KVV+PT+R LL LIHRM+EFVVREGPMFEAMIMN+EI+NP++RFLFENQ+PAH+YYRWK+
Sbjct: 417 KVVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKL 476
Query: 404 YSILQGDQPKEWRTNEFRMFDGGSVWRPPPMNLFTQGMPDELVEEEV--ESKTKGSLSNS 461
YSILQGD P +WRT +FRMF GS WRPPP+N + GM +E E E KG+L
Sbjct: 477 YSILQGDSPTKWRTEDFRMFKNGSFWRPPPLNPYLHGMSEEQETEAFVEEPSKKGALKEE 536
Query: 462 QRHRLEDFLRNLTPERVKVAEAMVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLYL 521
QR +LE+ LR LTP + + +AMVFC+ +++AAEEI +CI ESLS T L KKI RLYL
Sbjct: 537 QRDKLEEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYL 596
Query: 522 VSDILHNCGIKISNASFYRRGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAW 581
VSD+L+N K++NAS+YR+ FE++L QIF++++ TY ++ L++E + RVM FRAW
Sbjct: 597 VSDVLYNSSAKVANASYYRKFFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAW 656
Query: 582 EDWAVYPKDYLIKLQNVFLGLSDAVPLDANNGNEEDEDLDGAPL-SDVDG---EDLDGVP 637
EDWA+YP+ +LIKLQN+FLGL + + + + +DLDGAP+ ++DG ED+DG+P
Sbjct: 657 EDWAIYPEPFLIKLQNIFLGLVNII--EEKETEDVPDDLDGAPIEEELDGAPLEDVDGIP 714
Query: 638 LDGAALMKSLQRLPHSSSAPDEDDIDGVPCTYNITSATMDGEDLDGVPMDKVKPARAATF 697
+D + DD+DGVP ++D +DLDGVP+D + ++
Sbjct: 715 IDATPI----------------DDLDGVPI------KSLD-DDLDGVPLDATEDSKKNEP 751
Query: 698 I----PSKWETVEEN--EDSAVTSSKWDDVEQ 723
I PSKWE V+E+ E AVT+SKW+ +Q
Sbjct: 752 IFKVAPSKWEAVDESELEAQAVTTSKWELFDQ 783
>sp|Q6NV83|SR140_MOUSE U2 snRNP-associated SURP motif-containing protein OS=Mus musculus
GN=U2surp PE=1 SV=3
Length = 1029
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/753 (51%), Positives = 508/753 (67%), Gaps = 73/753 (9%)
Query: 5 TMKKQIAEQKLKAFSIGSMG-AKRTLSKKEQEEQKKKEQEAAAAQAFEEFVATFQENPAA 63
+ + + E KLKAFSIG M AKRTLSKKEQEE KKKE E AAA+ +EEF+A F+ +
Sbjct: 71 NLSRPLLENKLKAFSIGKMSTAKRTLSKKEQEELKKKEDEKAAAEIYEEFLAAFEGSDGN 130
Query: 64 KTNKVWVKAGTYDAGRRREDTSEK-GKLYKPQSRLQEDKDS-SASKAEEYARLLGDKKTE 121
K K +V+ G +A + +T EK GK+YKP SR + K+ + S E LL E
Sbjct: 131 KV-KTFVRGGVVNAAKDEHETDEKRGKIYKPSSRFADQKNPPNQSSNERPPSLLV---IE 186
Query: 122 SQRLKKNNKIDIKKKSNLEMFKEELKMIQEEREERHKYKGVLKGVYSEEAEPPSA----- 176
+++ KKKSNLE+FKEELK IQEER+ERHK KG L EPP +
Sbjct: 187 TKKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLSRF-----EPPQSDSDGQ 241
Query: 177 -------------IAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLA 223
+ + GS D GDP TTNLYLGN+NP++ E+ L + FGR+GPLA
Sbjct: 242 RRSMDVPSRRNRSSGVLDDYAPGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLA 301
Query: 224 SIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVPIPSY 283
S+KIMWPR+DEE+AR RNCGFVAFMNR+D ERALK LNGK + S+EMKLGWGK+VPIP +
Sbjct: 302 SVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPPH 361
Query: 284 PIYIPPKMLELTVPPPPSGLPFNAQPASKDKH-RIPKLRPGEPLTREDLDRLDQILNQAY 342
PIYIPP M+E T+PPPPSGLPFNAQP + K+ P L P P +ED ++ L+QA
Sbjct: 362 PIYIPPSMMEHTLPPPPSGLPFNAQPRERLKNPNAPMLPP--PKNKEDFEK---TLSQAI 416
Query: 343 VKVVVPTDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWK 402
VKVV+PT+R LL LIHRM+EFVVREGPMFEAMIMN+EI+NP++RFLFENQ+PAH+YYRWK
Sbjct: 417 VKVVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFRFLFENQTPAHVYYRWK 476
Query: 403 MYSILQGDQPKEWRTNEFRMFDGGSVWRPPPMNLFTQGMPDELVEEEV--ESKTKGSLSN 460
+YSILQGD P +WRT +FRMF GS WRPPP+N + GM +E E E KG+L
Sbjct: 477 LYSILQGDSPTKWRTEDFRMFKNGSFWRPPPLNPYLHGMSEEQETEAFVEEPSKKGALKE 536
Query: 461 SQRHRLEDFLRNLTPERVKVAEAMVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLY 520
QR +LE+ LR LTP + + +AMVFC+ +++AAEEI +CI ESLS T L KKI RLY
Sbjct: 537 EQRDKLEEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLY 596
Query: 521 LVSDILHNCGIKISNASFYRRGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRA 580
LVSD+L+N K++NAS+YR+ FE++L QIF++++ TY ++ L++E + RVM FRA
Sbjct: 597 LVSDVLYNSSAKVANASYYRKFFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRA 656
Query: 581 WEDWAVYPKDYLIKLQNVFLGLSDAVPLDANNGNEEDEDLDGAPL-SDVDG---EDLDGV 636
WEDWA+YP+ +LIKLQN+FLGL + + + + +DLDGAP+ ++DG ED+DG+
Sbjct: 657 WEDWAIYPEPFLIKLQNIFLGLVNII--EEKETEDVPDDLDGAPIEEELDGAPLEDVDGI 714
Query: 637 PLDGAALMKSLQRLPHSSSAPDEDDIDGVPCTYNITSATMDGEDLDGVPMDKVKPARAAT 696
P+D + DD+DGVP ++D +DLDGVP+D + ++
Sbjct: 715 PIDATPI----------------DDLDGVPIK------SLD-DDLDGVPLDATEDSKKNE 751
Query: 697 FI----PSKWETVEEN--EDSAVTSSKWDDVEQ 723
I PSKWE V+E+ E AVT+SKW+ +Q
Sbjct: 752 PIFKVAPSKWEAVDESELEAQAVTTSKWELFDQ 784
>sp|O15042|SR140_HUMAN U2 snRNP-associated SURP motif-containing protein OS=Homo sapiens
GN=U2SURP PE=1 SV=2
Length = 1029
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/753 (51%), Positives = 508/753 (67%), Gaps = 73/753 (9%)
Query: 5 TMKKQIAEQKLKAFSIGSMG-AKRTLSKKEQEEQKKKEQEAAAAQAFEEFVATFQENPAA 63
+ + + E KLKAFSIG M AKRTLSKKEQEE KKKE E AAA+ +EEF+A F+ +
Sbjct: 71 NLSRPLLENKLKAFSIGKMSTAKRTLSKKEQEELKKKEDEKAAAEIYEEFLAAFEGSDGN 130
Query: 64 KTNKVWVKAGTYDAGRRREDTSEK-GKLYKPQSRLQEDKDS-SASKAEEYARLLGDKKTE 121
K K +V+ G +A + +T EK GK+YKP SR + K+ + S E LL E
Sbjct: 131 KV-KTFVRGGVVNAAKEEHETDEKRGKIYKPSSRFADQKNPPNQSSNERPPSLLV---IE 186
Query: 122 SQRLKKNNKIDIKKKSNLEMFKEELKMIQEEREERHKYKGVLKGVYSEEAEPPSA----- 176
+++ KKKSNLE+FKEELK IQEER+ERHK KG L EPP +
Sbjct: 187 TKKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLSRF-----EPPQSDSDGQ 241
Query: 177 -------------IAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLA 223
+ + GS D GDP TTNLYLGN+NP++ E+ L + FGR+GPLA
Sbjct: 242 RRSMDAPSRRNRSSGVLDDYAPGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLA 301
Query: 224 SIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVPIPSY 283
S+KIMWPR+DEE+AR RNCGFVAFMNR+D ERALK LNGK + S+EMKLGWGK+VPIP +
Sbjct: 302 SVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPPH 361
Query: 284 PIYIPPKMLELTVPPPPSGLPFNAQPASKDKH-RIPKLRPGEPLTREDLDRLDQILNQAY 342
PIYIPP M+E T+PPPPSGLPFNAQP + K+ P L P P +ED ++ L+QA
Sbjct: 362 PIYIPPSMMEHTLPPPPSGLPFNAQPRERLKNPNAPMLPP--PKNKEDFEK---TLSQAI 416
Query: 343 VKVVVPTDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWK 402
VKVV+PT+R LL LIHRM+EFVVREGPMFEAMIMN+EI+NP++RFLFENQ+PAH+YYRWK
Sbjct: 417 VKVVIPTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFRFLFENQTPAHVYYRWK 476
Query: 403 MYSILQGDQPKEWRTNEFRMFDGGSVWRPPPMNLFTQGMPDELVEEEV--ESKTKGSLSN 460
+YSILQGD P +WRT +FRMF GS WRPPP+N + GM +E E E KG+L
Sbjct: 477 LYSILQGDSPTKWRTEDFRMFKNGSFWRPPPLNPYLHGMSEEQETEAFVEEPSKKGALKE 536
Query: 461 SQRHRLEDFLRNLTPERVKVAEAMVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLY 520
QR +LE+ LR LTP + + +AMVFC+ +++AAEEI +CI ESLS T L KKI RLY
Sbjct: 537 EQRDKLEEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLY 596
Query: 521 LVSDILHNCGIKISNASFYRRGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRA 580
LVSD+L+N K++NAS+YR+ FE++L QIF++++ TY ++ L++E + RVM FRA
Sbjct: 597 LVSDVLYNSSAKVANASYYRKFFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRA 656
Query: 581 WEDWAVYPKDYLIKLQNVFLGLSDAVPLDANNGNEEDEDLDGAPL-SDVDG---EDLDGV 636
WEDWA+YP+ +LIKLQN+FLGL + + + + +DLDGAP+ ++DG ED+DG+
Sbjct: 657 WEDWAIYPEPFLIKLQNIFLGLVNII--EEKETEDVPDDLDGAPIEEELDGAPLEDVDGI 714
Query: 637 PLDGAALMKSLQRLPHSSSAPDEDDIDGVPCTYNITSATMDGEDLDGVPMDKVKPARAAT 696
P+D + DD+DGVP ++D +DLDGVP+D + ++
Sbjct: 715 PIDATPI----------------DDLDGVPI------KSLD-DDLDGVPLDATEDSKKNE 751
Query: 697 FI----PSKWETVEEN--EDSAVTSSKWDDVEQ 723
I PSKWE V+E+ E AVT+SKW+ +Q
Sbjct: 752 PIFKVAPSKWEAVDESELEAQAVTTSKWELFDQ 784
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 9/140 (6%)
Query: 174 PSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSD 233
P A+YQ + DP T +++G L+ +T+ +L IFG++G L +KI
Sbjct: 238 PMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKI------ 291
Query: 234 EEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVPIPSYPIYIPPKMLE 293
G+ CGFV + N+ E AL LNG + ++L WG+S S
Sbjct: 292 ---PPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNKQSDQAQWNGGGYY 348
Query: 294 LTVPPPPSGLPFNAQPASKD 313
P P G + AQP ++D
Sbjct: 349 GYPPQPQGGYGYAAQPPTQD 368
Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 198 LYLGNLNPKITEQQLMEIFGR-YGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
+++G+L P++T+ L + F YG + K++ D R + GFV F + + RA
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVL---DRTTGRSKGYGFVRFADENEQMRA 212
Query: 257 LKYLNGKDVQSYEMKLG 273
+ +NG+ + M++G
Sbjct: 213 MTEMNGQYCSTRPMRIG 229
Score = 36.6 bits (83), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
+L++G+L + E +M +F + G S K++ ++ + GF+ F++ ER
Sbjct: 61 SLWIGDLQQWMDENYIMSVFAQSGEATSAKVI---RNKLTGQSEGYGFIEFVSHSVAERV 117
Query: 257 LKYLNGKDVQSYE--MKLGWGKS 277
L+ NG + S E +L W ++
Sbjct: 118 LQTYNGAPMPSTEQTFRLNWAQA 140
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 10/100 (10%)
Query: 178 AIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKA 237
A YQ T+G+ DP T +++G ++ +TE L +FG++G L +KI
Sbjct: 261 ASYQN-TQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKI---------P 310
Query: 238 RGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKS 277
G+ CGFV + NR E+AL LNG + ++L WG+S
Sbjct: 311 AGKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRS 350
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
+L++G+L P + E LM +FG G + K++ +++ GF+ F+N ER
Sbjct: 81 SLWIGDLQPWMDENYLMNVFGLTGEATAAKVI---RNKQNGYSEGYGFIEFVNHATAERN 137
Query: 257 LKYLNGKDVQSYE--MKLGWGK 276
L+ NG + S E +L W +
Sbjct: 138 LQTYNGAPMPSSEQAFRLNWAQ 159
Score = 40.4 bits (93), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 198 LYLGNLNPKITEQQLMEIF-GRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
+++G+L P +T+ L E F Y + K++ +D R + GFV F + + RA
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVV---NDRTTGRSKGYGFVRFADESEQIRA 231
Query: 257 LKYLNGKDVQSYEMKLG 273
+ +NG+ S M+ G
Sbjct: 232 MTEMNGQYCSSRPMRTG 248
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRK 251
DP T +++G L+P + E+ L ++F YG L +KI+ G+ CGFV F R
Sbjct: 278 DPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIV---------AGKRCGFVQFGTRA 328
Query: 252 DGERALKYLNGKDVQSYEMKLGWGKS 277
E+AL LNG + ++L WG+S
Sbjct: 329 SAEQALSSLNGTQLGGQSIRLSWGRS 354
Score = 33.9 bits (76), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 192 DPCTTNLYLGNLNPKITEQQLMEIF-GRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNR 250
D +++G+L +T+ L E F Y + K++ +D R + GFV F +
Sbjct: 172 DSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVV---TDRITGRSKGYGFVKFADE 228
Query: 251 KDGERALKYLNGKDVQSYEMKLG 273
+ RA+ +NG + M++G
Sbjct: 229 SEQLRAMTEMNGVLCSTRPMRIG 251
>sp|P32831|NGR1_YEAST Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NGR1 PE=1 SV=2
Length = 672
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRK 251
DP T +++G L PK TE QL +F +GP+ +++I G+NCGFV F R
Sbjct: 356 DPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRI---------PNGKNCGFVKFEKRI 406
Query: 252 DGERALKYLNGKDVQSYEMKLGWGK 276
D E +++ L G V ++L WG+
Sbjct: 407 DAEASIQGLQGFIVGGSPIRLSWGR 431
Score = 40.4 bits (93), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 198 LYLGNLNPKITEQQLMEIF-GRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
L++G+L+P TE L+ +F R+ + ++++M +D R GFV F + + RA
Sbjct: 194 LFVGDLSPTATEADLLSLFQTRFKSVKTVRVM---TDPLTGSSRCFGFVRFGDEDERRRA 250
Query: 257 LKYLNGKDVQSYEMKLGWG 275
L ++GK Q +++ +
Sbjct: 251 LIEMSGKWFQGRALRVAYA 269
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 180 YQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARG 239
YQ G DP T +++G L+ +T+ L +F +YG + +KI G
Sbjct: 245 YQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKI---------PAG 295
Query: 240 RNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKS 277
+ CGFV F + E AL+ LNG + ++L WG+S
Sbjct: 296 KRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRS 333
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 185 KGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGF 244
GS G+ + +++G L+ +TE+ LM+ F +G + S+KI G+ CGF
Sbjct: 316 NGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKI---------PVGKGCGF 366
Query: 245 VAFMNRKDGERALKYLNGKDVQSYEMKLGWGKS 277
V F NR+ E A+ LNG + ++L WG+S
Sbjct: 367 VQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRS 399
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 198 LYLGNLNPKITEQQLMEIF-GRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
+++G+L P +++ L+E F GRY + K++ D R + GFV F + + RA
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVV---IDSNTGRSKGYGFVRFGDENERSRA 271
Query: 257 LKYLNGKDVQSYEMKLG 273
+ +NG S +M++G
Sbjct: 272 MTEMNGAFCSSRQMRVG 288
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 63.5 bits (153), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNR 250
GD T +++G L+ +T++ L + F +G + S+KI G+ CGFV F+NR
Sbjct: 301 GDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI---------PVGKGCGFVQFVNR 351
Query: 251 KDGERALKYLNGKDVQSYEMKLGWGKS 277
+ E AL+ LNG + ++L WG++
Sbjct: 352 PNAEEALEKLNGTVIGKQTVRLSWGRN 378
Score = 36.6 bits (83), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 198 LYLGNLNPKITEQQLMEIFG-RYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
+++G+L P +++ L E F +Y + + K++ D R + GFV F + + +A
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVL---DANTGRSKGYGFVRFGDENERTKA 257
Query: 257 LKYLNGKDVQSYEMKLG 273
+ +NG S M++G
Sbjct: 258 MTEMNGVKCSSRAMRIG 274
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNR 250
GD T +++G L+ +T++ L + F +G + S+KI G+ CGFV F+NR
Sbjct: 299 GDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKI---------PVGKGCGFVQFVNR 349
Query: 251 KDGERALKYLNGKDVQSYEMKLGWGKS 277
+ E AL+ LNG + ++L WG++
Sbjct: 350 PNAEEALEKLNGTVIGKQTVRLSWGRN 376
Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 198 LYLGNLNPKITEQQLMEIFG-RYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
+++G+L+P +++ L E F +Y + + K++ D R + GFV F + + +A
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVL---DANTGRSKGYGFVRFGDENERTKA 255
Query: 257 LKYLNGKDVQSYEMKLG 273
+ +NG S M++G
Sbjct: 256 MTEMNGVKCSSRAMRIG 272
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 184 TKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCG 243
T GS GD T +++G L+ ++T+++L + F ++G + S+KI G+ CG
Sbjct: 283 THGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKI---------PAGKGCG 333
Query: 244 FVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKS 277
FV F +R + A++ L+G + ++L WG+S
Sbjct: 334 FVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRS 367
Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 197 NLYLGNLNPKITEQQLMEIFG-RYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
++++G+L +T+ L + F RY L K++ D + GFV F + + R
Sbjct: 178 SIFVGDLASDVTDTMLRDTFASRYPSLKGAKVV---VDANTGHSKGYGFVRFGDESERSR 234
Query: 256 ALKYLNGKDVQSYEMKLGWGKSVPIPSYP 284
A+ +NG S M++G V P P
Sbjct: 235 AMTEMNGVYCSSRAMRIG----VATPKKP 259
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDG 253
+ +LY+G L+P +TE L EIF GP+ASI++ D R +V ++N DG
Sbjct: 44 VSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVC---RDAVTRRSLGYAYVNYLNAADG 100
Query: 254 ERALKYLNGKDVQSYEMKLGWGKSVP 279
ERAL++LN ++ ++ W + P
Sbjct: 101 ERALEHLNYSLIKGQSCRIMWSQRDP 126
Score = 40.4 bits (93), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ N++ ++T+ + ++ +GP S+ + S +EK + GFV + N + +
Sbjct: 227 TNVYIKNVDLEVTDAEFEDLVKPFGPTISVAL----SRDEKGVSKGFGFVNYENHESARK 282
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ LN K+V ++ G
Sbjct: 283 AVDELNEKEVNGKKLYAG 300
Score = 34.7 bits (78), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
NLY+ NL+ + + +L F +G + S K+M R D +RG GFV + + + +
Sbjct: 330 VNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVM--RDDSGVSRG--FGFVCYSSPDEATK 385
Query: 256 ALKYLNGKDV 265
A+ +NGK +
Sbjct: 386 AVSEMNGKMI 395
Score = 34.3 bits (77), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
N+++ NL+ I + L + F +G + S K+ +E + R FV + + + A
Sbjct: 135 NIFIKNLDQSIDNKALHDTFAAFGDILSCKV----GTDENGKSRGFAFVHYSTGEAADAA 190
Query: 257 LKYLNG 262
+K +NG
Sbjct: 191 IKAVNG 196
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDG 253
+ +LY+G L+P +TE L EIF GP+ASI++ D R +V ++N DG
Sbjct: 44 VSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVC---RDAVTRRSLGYAYVNYLNAADG 100
Query: 254 ERALKYLNGKDVQSYEMKLGWGKSVP 279
ERAL++LN ++ ++ W + P
Sbjct: 101 ERALEHLNYSLIKGQSCRIMWSQRDP 126
Score = 40.4 bits (93), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ N++ ++T+ + ++ +GP S+ + S +EK + GFV + N + +
Sbjct: 227 TNVYIKNVDLEVTDAEFEDLVKPFGPTISVAL----SRDEKGVSKGFGFVNYENHESARK 282
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ LN K+V ++ G
Sbjct: 283 AVDELNEKEVNGKKLYAG 300
Score = 34.7 bits (78), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
NLY+ NL+ + + +L F +G + S K+M R D +RG GFV + + + +
Sbjct: 330 VNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVM--RDDSGVSRG--FGFVCYSSPDEATK 385
Query: 256 ALKYLNGKDV 265
A+ +NGK +
Sbjct: 386 AVSEMNGKMI 395
Score = 34.3 bits (77), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
N+++ NL+ I + L + F +G + S K+ +E + R FV + + + A
Sbjct: 135 NIFIKNLDQSIDNKALHDTFAAFGDILSCKV----GTDENGKSRGFAFVHYSTGEAADAA 190
Query: 257 LKYLNG 262
+K +NG
Sbjct: 191 IKAVNG 196
>sp|Q10200|YBY1_SCHPO Uncharacterized protein C11C11.01 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC11C11.01 PE=1 SV=2
Length = 466
Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 98/220 (44%), Gaps = 33/220 (15%)
Query: 451 ESKTKGSLSNSQRHRLEDFLRNLTPERVKVAEAMVFCMEHSDAAEEICECIMESLSNES- 509
ES+ K L+ R +LE ++ L E+ + + F +EH + EI + ++ N+
Sbjct: 202 ESQDKDKLTKLDRAKLEWLIQGLNCEKGSIGNLLCFAVEHVNNHVEITDAFLKEFFNDQP 261
Query: 510 ---TALH----------KKIGRLYLVSDILHNCGIKISNASFYRRGFESRLFQIFTEMHI 556
T ++ KK+ +YL++DIL N S YR FE + ++ ++++
Sbjct: 262 TDDTKVYDDDYINERGEKKLSLIYLMNDILFNGISGTSLVWRYRFSFEPHVERLLDDLYL 321
Query: 557 TYVNLESRLKAEGLRTRVMQVFRAWEDWAVYPKDYLIKLQNVFLG--------LSDAVPL 608
L R+K + +V++V W+ W + ++ L + F G S A+ +
Sbjct: 322 FSKRLGGRIKEDIFCKKVVKVIEVWKTWIAFQEETLERAWRNFSGNTPQSPQINSAALKV 381
Query: 609 DANNG----NEEDEDLDGAPLSDVDGEDLDGVPLDGAALM 644
+ N +EE E L D E+ +G+P+D L+
Sbjct: 382 ETKNSWTAISEETEGLQ-------DDEEYNGIPVDVNELL 414
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 60.1 bits (144), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 9/92 (9%)
Query: 186 GSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFV 245
GS G+ +++G ++P + ++ L + F ++G + S+KI G+ CGFV
Sbjct: 311 GSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKI---------PVGKGCGFV 361
Query: 246 AFMNRKDGERALKYLNGKDVQSYEMKLGWGKS 277
F +RK E A++ LNG + ++L WG+S
Sbjct: 362 QFADRKSAEDAIESLNGTVIGKNTVRLSWGRS 393
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 197 NLYLGNLNPKITEQQLMEIFG-RYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
++++G+L+P +T+ L E F RY + S K++ D R + GFV F + + R
Sbjct: 203 SVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVV---IDSNTGRSKGYGFVRFGDENERSR 259
Query: 256 ALKYLNGKDVQSYEMKLG 273
AL +NG + +M++G
Sbjct: 260 ALTEMNGAYCSNRQMRVG 277
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKD 252
P + +LY+G L+P +TE L E+F GP+ASI++ D R +V F N +D
Sbjct: 77 PTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVC---RDAVTRRSLGYAYVNFHNMED 133
Query: 253 GERALKYLNGKDVQSYEMKLGWGKSVP 279
GE+AL LN ++ ++ W + P
Sbjct: 134 GEKALDELNYTLIKGRPCRIMWSQRDP 160
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 50/78 (64%), Gaps = 4/78 (5%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ NL+ +ITEQ+ ++FG++G + S+ ++ ++D + R GFV + N + ++
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQND----KPRGFGFVNYANHECAQK 316
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ LN K+ + ++ +G
Sbjct: 317 AVDELNDKEYKGKKLYVG 334
Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGE 254
T N+++ NL+P I + L + F +G + S K+ + +E + GFV F + +
Sbjct: 167 TGNVFIKNLDPAIDNKALHDTFSAFGKILSCKV----AVDELGNAKGYGFVHFDSVESAN 222
Query: 255 RALKYLNGKDVQSYEMKLG 273
A++++NG + ++ +G
Sbjct: 223 AAIEHVNGMLLNDKKVYVG 241
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
NL++ NL ++ +++L F +G + S KIM +E+ + + GFV + ++ +
Sbjct: 364 VNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMT----DEQGKSKGFGFVCYTTPEEANK 419
Query: 256 ALKYLN 261
A+ +N
Sbjct: 420 AVTEMN 425
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 4/78 (5%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ N + +++L E+FG+YGP S+K+M ++ + + GFV+F +D ++
Sbjct: 191 TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVM----TDDNGKSKGFGFVSFERHEDAQK 246
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ +NGKD+ M +G
Sbjct: 247 AVDEMNGKDMNGKSMFVG 264
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
+LY+G+L+ +TE L E F GP+ SI++ D R +V F D ER
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAER 67
Query: 256 ALKYLNGKDVQSYEMKLGWGKSVP 279
AL +N ++ +++ W + P
Sbjct: 68 ALDTMNFDVIKGRPVRIMWSQRDP 91
Score = 41.2 bits (95), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 37/151 (24%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
NLY+ NL+ I +++L + F +G + S K+M E R + GFV F + ++ +
Sbjct: 294 VNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMM-----EGGRSKGFGFVCFSSPEEATK 348
Query: 256 ALKYLNGKDVQSYEMKLGWGK------------------SVPIPSYPIYIPPKMLELTVP 297
A+ +NG+ V + + + + SV +P+ P+ P +
Sbjct: 349 AVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRVPN-PVINPYQ------- 400
Query: 298 PPPSGLPFNAQPASKDKH------RIPKLRP 322
PPPS A P ++++ +I +LRP
Sbjct: 401 PPPSSYFMAAIPPAQNRAAYYPPGQIAQLRP 431
Score = 40.0 bits (92), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
N+++ NL+ I + L + F +G + S K++ DE ++G GFV F ++ ERA
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVV---CDENGSKG--YGFVHFETQEAAERA 154
Query: 257 LKYLNGKDVQSYEMKLGWGKS 277
+ +NG + ++ +G KS
Sbjct: 155 IDKMNGMLLNDRKVFVGRFKS 175
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 178 AIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKA 237
A+ E + + D+ + T+LY+G L+P +TE L EIF G +ASI++ D
Sbjct: 31 AVGNGEQRNNADAAN--NTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVC---RDAVTR 85
Query: 238 RGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVP 279
R +V F+N DGERA++ LN +++ ++ W + P
Sbjct: 86 RSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMWSQRDP 127
Score = 40.0 bits (92), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 51/89 (57%), Gaps = 11/89 (12%)
Query: 182 EETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRN 241
EET+ +F TN+Y N++P++T+ + ++F ++G + S + R ++ K++G
Sbjct: 220 EETRANF-------TNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQ--RDEDGKSKG-- 268
Query: 242 CGFVAFMNRKDGERALKYLNGKDVQSYEM 270
GFV F + + ++A+ L+ D + ++
Sbjct: 269 FGFVNFEDHNEAQKAVDELHDSDFKGQKL 297
Score = 37.4 bits (85), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
NLYL N+ +++L E F +G + S KIM R+ +RG GFV + ++ +
Sbjct: 330 VNLYLKNIPESYDDERLREEFAPFGAITSCKIM--RAPSGVSRG--FGFVCYSAPEEANK 385
Query: 256 ALKYLNGK 263
A+ +NGK
Sbjct: 386 AVSEMNGK 393
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ N + +++L E+FG++GP S+K+M +E + + GFV+F +D ++
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ +NGK++ ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
+LY+G+L+P +TE L E F GP+ SI++ D R +V F D ER
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAER 67
Query: 256 ALKYLNGKDVQSYEMKLGWGKSVP 279
AL +N ++ +++ W + P
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDP 91
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 41/154 (26%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
NLY+ NL+ I +++L + F +G + S K+M E R + GFV F + ++ +
Sbjct: 294 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-----EGGRSKGFGFVCFSSPEEATK 348
Query: 256 ALKYLNGKDVQS---------------------YEMKLGWGKSVPIPSYPIYIPPKMLEL 294
A+ +NG+ V + Y ++ ++VP P Y
Sbjct: 349 AVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPY-------- 400
Query: 295 TVPPPPSGLPFNAQPASKDK------HRIPKLRP 322
P PPSG A P ++++ +I +LRP
Sbjct: 401 -QPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRP 433
Score = 40.8 bits (94), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
N+++ NL+ I + L + F +G + S K++ DE ++G GFV F ++ ERA
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVV---CDENGSKG--YGFVHFETQEAAERA 154
Query: 257 LKYLNGKDVQSYEMKLGWGKS 277
++ +NG + ++ +G KS
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKS 175
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ N + +++L E+FG++GP S+K+M +E + + GFV+F +D ++
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ +NGK++ ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
+LY+G+L+P +TE L E F GP+ SI++ D R +V F D ER
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAER 67
Query: 256 ALKYLNGKDVQSYEMKLGWGKSVP 279
AL +N ++ +++ W + P
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDP 91
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 41/154 (26%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
NLY+ NL+ I +++L + F +G + S K+M E R + GFV F + ++ +
Sbjct: 294 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-----EGGRSKGFGFVCFSSPEEATK 348
Query: 256 ALKYLNGKDVQS---------------------YEMKLGWGKSVPIPSYPIYIPPKMLEL 294
A+ +NG+ V + Y ++ ++VP P Y
Sbjct: 349 AVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPY-------- 400
Query: 295 TVPPPPSGLPFNAQPASKDK------HRIPKLRP 322
P PPSG A P ++++ +I +LRP
Sbjct: 401 -QPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRP 433
Score = 40.8 bits (94), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
N+++ NL+ I + L + F +G + S K++ DE ++G GFV F ++ ERA
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC---DENGSKG--YGFVHFETQEAAERA 154
Query: 257 LKYLNGKDVQSYEMKLGWGKS 277
++ +NG + ++ +G KS
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKS 175
>sp|Q3ZCC5|RBM18_BOVIN Probable RNA-binding protein 18 OS=Bos taurus GN=RBM18 PE=2 SV=1
Length = 190
Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 184 TKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCG 243
++GS G L++GNL+PKITE L+ + ++G + ++ +S + + R
Sbjct: 17 SEGSLQEGH----RLWIGNLDPKITEYHLLRLLQKFGTVKQFDFLFHKSGALEGQPRGYC 72
Query: 244 FVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKS 277
FV F +++ E+A++ LNGK S ++ + W +
Sbjct: 73 FVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHA 106
>sp|Q5R6W3|RBM18_PONAB Probable RNA-binding protein 18 OS=Pongo abelii GN=RBM18 PE=2 SV=1
Length = 190
Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 184 TKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCG 243
++GS G L++GNL+PKITE L+++ ++G + ++ +S + + R
Sbjct: 17 SEGSLQEGH----RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYC 72
Query: 244 FVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKS 277
FV F +++ E+A++ LNGK S ++ + W +
Sbjct: 73 FVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHA 106
>sp|Q9CR83|RBM18_MOUSE Probable RNA-binding protein 18 OS=Mus musculus GN=Rbm18 PE=2 SV=1
Length = 190
Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 184 TKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCG 243
++GS G L++GNL+PKITE L+++ ++G + ++ +S + + R
Sbjct: 17 SEGSLQEGH----RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYC 72
Query: 244 FVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKS 277
FV F +++ E+A++ LNGK S ++ + W +
Sbjct: 73 FVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHA 106
>sp|Q96H35|RBM18_HUMAN Probable RNA-binding protein 18 OS=Homo sapiens GN=RBM18 PE=2 SV=1
Length = 190
Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 184 TKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCG 243
++GS G L++GNL+PKITE L+++ ++G + ++ +S + + R
Sbjct: 17 SEGSLQEGH----RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYC 72
Query: 244 FVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKS 277
FV F +++ E+A++ LNGK S ++ + W +
Sbjct: 73 FVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHA 106
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKD 252
P +++LY+G+L P+++EQ L EIF + G +++I++ D R + +V + N D
Sbjct: 7 PISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVC---RDTNTRRSLSYAYVNYYNGAD 63
Query: 253 GERALKYLNGKDVQSYEMKLGWGKSVP 279
ERAL LN ++ ++ W + P
Sbjct: 64 AERALDTLNNTPIRGKACRIMWSQRDP 90
Score = 40.4 bits (93), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
NLY+ N++ I +L E+F ++G + S +M D++ + GFV + + R
Sbjct: 284 VNLYIKNIDDSIDNDKLREVFSQFGTITSAIVM---KDDKATTSKGFGFVCYTAPDEATR 340
Query: 256 ALKYLNGKDV 265
A+ +NG+ +
Sbjct: 341 AVTEMNGRMI 350
Score = 35.0 bits (79), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN++ NL+ + QL E+ +YG + +I IM ++K + + GF F + + +
Sbjct: 188 TNVFFKNLSEDVGPDQLKELLQQYGEITNITIMA----DDKGKSKGFGFANFESAEAAKN 243
Query: 256 ALKYLNGK 263
++ NGK
Sbjct: 244 VVENENGK 251
Score = 34.3 bits (77), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
N+++ NL+ I + L + F +G + S K++ + K GFV + ++ ++A
Sbjct: 99 NVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKG----FGFVHYETQESADKA 154
Query: 257 LKYLNGKDVQSYEMKLGWGKS 277
+ +NG + ++ +G KS
Sbjct: 155 IAKVNGMMINGQKVFVGPFKS 175
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ N + +++L ++FG++GP S+K+M +E + + GFV+F +D ++
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ +NGK++ ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
+LY+G+L+P TE L E F GP+ SI++ D R +V F D ER
Sbjct: 11 ASLYVGDLHPDATEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAER 67
Query: 256 ALKYLNGKDVQSYEMKLGWGKSVP 279
AL +N ++ +++ W + P
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDP 91
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 41/154 (26%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
NLY+ NL+ I +++L + F +G + S K+M E R + GFV F + ++ +
Sbjct: 294 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-----EGGRSKGFGFVCFSSPEEATK 348
Query: 256 ALKYLNGKDVQS---------------------YEMKLGWGKSVPIPSYPIYIPPKMLEL 294
A+ +NG+ V + Y ++ ++VP P Y
Sbjct: 349 AVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPY-------- 400
Query: 295 TVPPPPSGLPFNAQPASKDK------HRIPKLRP 322
P PPSG A P ++++ +I +LRP
Sbjct: 401 -QPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRP 433
Score = 40.8 bits (94), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
N+++ NL+ I + L + F +G + S K++ DE ++G GFV F ++ ERA
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVV---CDENGSKG--YGFVHFETQEAAERA 154
Query: 257 LKYLNGKDVQSYEMKLGWGKS 277
++ +NG + ++ +G KS
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKS 175
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ N + +++L ++FG++GP S+K+M +E + + GFV+F +D ++
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ +NGK++ ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
+LY+G+L+P +TE L E F GP+ SI++ D R +V F D ER
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAER 67
Query: 256 ALKYLNGKDVQSYEMKLGWGKSVP 279
AL +N ++ +++ W + P
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDP 91
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 41/154 (26%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
NLY+ NL+ I +++L + F +G + S K+M E R + GFV F + ++ +
Sbjct: 294 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-----EGGRSKGFGFVCFSSPEEATK 348
Query: 256 ALKYLNGKDVQS---------------------YEMKLGWGKSVPIPSYPIYIPPKMLEL 294
A+ +NG+ V + Y ++ ++VP P Y
Sbjct: 349 AVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPY-------- 400
Query: 295 TVPPPPSGLPFNAQPASKDK------HRIPKLRP 322
P PPSG A P ++++ +I +LRP
Sbjct: 401 -QPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRP 433
Score = 40.8 bits (94), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
N+++ NL+ I + L + F +G + S K++ DE ++G GFV F ++ ERA
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVV---CDENGSKG--YGFVHFETQEAAERA 154
Query: 257 LKYLNGKDVQSYEMKLGWGKS 277
++ +NG + ++ +G KS
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKS 175
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ N + +++L ++FG++GP S+K+M +E + + GFV+F +D ++
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ +NGK++ ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
+LY+G+L+P +TE L E F GP+ SI++ D R +V F D ER
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAER 67
Query: 256 ALKYLNGKDVQSYEMKLGWGKSVP 279
AL +N ++ +++ W + P
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDP 91
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 41/154 (26%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
NLY+ NL+ I +++L + F +G + S K+M E R + GFV F + ++ +
Sbjct: 294 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-----EGGRSKGFGFVCFSSPEEATK 348
Query: 256 ALKYLNGKDVQS---------------------YEMKLGWGKSVPIPSYPIYIPPKMLEL 294
A+ +NG+ V + Y ++ ++VP P Y
Sbjct: 349 AVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPY-------- 400
Query: 295 TVPPPPSGLPFNAQPASKDK------HRIPKLRP 322
P PPSG A P ++++ +I +LRP
Sbjct: 401 -QPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRP 433
Score = 40.8 bits (94), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
N+++ NL+ I + L + F +G + S K++ DE ++G GFV F ++ ERA
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVV---CDENGSKG--YGFVHFETQEAAERA 154
Query: 257 LKYLNGKDVQSYEMKLGWGKS 277
++ +NG + ++ +G KS
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKS 175
>sp|Q6PBM8|RBM18_DANRE Probable RNA-binding protein 18 OS=Danio rerio GN=rbm18 PE=2 SV=1
Length = 188
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 48/80 (60%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++GN++PKITE L+++ ++G + ++ +S + + R FV F +++ ERA+
Sbjct: 25 LWIGNIDPKITEYHLVKLLEKFGKVKQFDFLFHKSGPLEGQPRGYCFVNFHTKEEAERAI 84
Query: 258 KYLNGKDVQSYEMKLGWGKS 277
+ LNGK S ++ + W +
Sbjct: 85 QCLNGKLALSKKLVVRWAHA 104
>sp|Q66J99|RBM18_XENLA Probable RNA-binding protein 18 OS=Xenopus laevis GN=rbm18 PE=2
SV=1
Length = 190
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 184 TKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCG 243
++GS G L++GN++PKITE L+++ ++G + ++ +S + + R
Sbjct: 17 SEGSLQDGH----RLWIGNVDPKITEYHLLKLLQKFGKVKQFDFLFHKSGPLEGQPRGYC 72
Query: 244 FVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKS 277
FV F + + ERA+ LNGK S ++ + W +
Sbjct: 73 FVNFETKAEAERAIHCLNGKMALSKKLVVRWAHA 106
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 183 ETKGSF-DSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRN 241
E KGS D GD +LY+G L+P +TE L EIF GP+ S+++ D R
Sbjct: 34 EEKGSKEDQGD--NASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVC---RDAITRRSLG 88
Query: 242 CGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVP 279
+V F N+ DG RAL+ LN ++ ++ W + P
Sbjct: 89 YAYVNFHNQADGIRALEELNYSPIKERPCRIMWSQRDP 126
Score = 42.7 bits (99), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
N+Y+ NL+P I + L + F +G + S KI + +E R GFV + + + E A
Sbjct: 135 NIYIKNLDPAIDNKALHDTFSAFGQILSCKI----ATDEFGNSRGFGFVHYESAESAESA 190
Query: 257 LKYLNG 262
++++NG
Sbjct: 191 IQHVNG 196
Score = 35.0 bits (79), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 14/81 (17%)
Query: 182 EETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRN 241
EE K SF TN+++ NL +ITE + E+ ++G +S+ + +DE G+
Sbjct: 220 EEQKNSF-------TNVFIKNLGTEITEAEFEELVNKFGETSSVHLST--NDE----GKP 266
Query: 242 CGFVAFMNRKDGERALKYLNG 262
GF F++ K+ + A+K ++G
Sbjct: 267 TGF-GFVDYKEHDVAVKAIDG 286
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
NLY+ NL+ I + +L F +G + S K+M +E + + GFV + + ++ +
Sbjct: 330 VNLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMV----DEAGKSKGFGFVCYSSPEEATK 385
Query: 256 ALKYLNGKDV 265
A+ +N + V
Sbjct: 386 AVTEMNHRLV 395
>sp|P32588|PUB1_YEAST Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PUB1 PE=1 SV=4
Length = 453
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
LY+GNL+ ITE L + F GP+A+IKIM +++ + N FV + D AL
Sbjct: 77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNN----KNVNYAFVEYHQSHDANIAL 132
Query: 258 KYLNGKDVQSYEMKLGW 274
+ LNGK +++ +K+ W
Sbjct: 133 QTLNGKQIENNIVKINW 149
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGE 254
T NL++G+LN + ++ L F + S +MW D + R GFV+F ++ D +
Sbjct: 161 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMW---DMQTGSSRGYGFVSFTSQDDAQ 217
Query: 255 RALKYLNGKDVQSYEMKLGW 274
A+ + G+D+ +++ W
Sbjct: 218 NAMDSMQGQDLNGRPLRINW 237
Score = 34.7 bits (78), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 190 SGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMN 249
S P T Y+GN+ TE L+ +F +G + K +P + C F+ +
Sbjct: 335 SAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFK-HYPE--------KGCCFIKYDT 385
Query: 250 RKDGERALKYLNGKDVQSYEMKLGWGK 276
+ + L Q ++ GWGK
Sbjct: 386 HEQAAVCIVALANFPFQGRNLRTGWGK 412
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 8/113 (7%)
Query: 161 GVLKGVYSEEAEPPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYG 220
GV V + +AE A A+ KGS P LY+G+L+ ITE L IF +G
Sbjct: 220 GVPIIVQASQAEKNRAAAMANNLQKGS---AGP--MRLYVGSLHFNITEDMLRGIFEPFG 274
Query: 221 PLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273
+ SI++M D E R + GF+ F + + ++AL+ LNG ++ MK+G
Sbjct: 275 RIESIQLMM---DSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 324
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 8/113 (7%)
Query: 161 GVLKGVYSEEAEPPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYG 220
GV V + +AE A A+ KGS P LY+G+L+ ITE L IF +G
Sbjct: 220 GVPIIVQASQAEKNRAAAMANNLQKGS---AGP--MRLYVGSLHFNITEDMLRGIFEPFG 274
Query: 221 PLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273
+ SI++M D E R + GF+ F + + ++AL+ LNG ++ MK+G
Sbjct: 275 RIESIQLMM---DSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 324
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 8/113 (7%)
Query: 161 GVLKGVYSEEAEPPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYG 220
GV V + +AE A A+ KGS P LY+G+L+ ITE L IF +G
Sbjct: 220 GVPIIVQASQAEKNRAAAMANNLQKGS---AGP--MRLYVGSLHFNITEDMLRGIFEPFG 274
Query: 221 PLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273
+ SI++M D E R + GF+ F + + ++AL+ LNG ++ MK+G
Sbjct: 275 RIESIQLMM---DSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 324
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 14/123 (11%)
Query: 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNR 250
D + +++G L+ ++E++L +F +G + +KI G+ CGFV F+NR
Sbjct: 298 ADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKI---------PPGKGCGFVQFVNR 348
Query: 251 KDGERALKYLNGKDVQSYEMKLGWGKSV-PIPSYPIYIPPKMLELTVPP----PPSGLPF 305
+ E A+ L G + + ++L WG++ PI + + ++ + T+P P LP
Sbjct: 349 QSAEIAINQLQGYPLGNSRIRLSWGRNQNPIAAPALNYQSQVSQTTIPATSLFPAMSLPP 408
Query: 306 NAQ 308
AQ
Sbjct: 409 QAQ 411
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 174 PSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSD 233
P A+ ++ P + +LY+G L+P +TE L E+F G +ASI++ D
Sbjct: 29 PEVTAVESSSPTSPNNNNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVC---RD 85
Query: 234 EEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVP 279
R +V + N DGERAL+ LN ++ ++ W + P
Sbjct: 86 AVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDP 131
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 55/95 (57%), Gaps = 4/95 (4%)
Query: 179 IYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKAR 238
I +++ + FD TN+Y+ N++P +TE++ +IF ++G + S + R E K+R
Sbjct: 215 ISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLS--RDPEGKSR 272
Query: 239 GRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273
G GFV + + + A+ ++ K+V++ ++ +G
Sbjct: 273 G--FGFVNYSTHESAQAAVDEMHDKEVKTQKLYVG 305
Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIM 228
NLY+ NL + +++L E+FG YG + S K+M
Sbjct: 335 VNLYVKNLTDDVDDEKLRELFGPYGTITSAKVM 367
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
N+++ NL+ I + L + F +G + S K+ + +E + GFV + + A
Sbjct: 140 NVFIKNLDSAIDNKALHDTFAAFGNILSCKV----AQDEFGNSKGYGFVHYETAEAANNA 195
Query: 257 LKYLNG 262
+K++NG
Sbjct: 196 IKHVNG 201
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
N+Y+ N + +++L ++FG++GP S+K+M +E + + GFV+F +D ++A
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQKA 247
Query: 257 LKYLNGKDVQSYEMKLG 273
+ +NGK++ ++ +G
Sbjct: 248 VDEMNGKELNGKQIYVG 264
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGE 254
T +LY+G+L+P +TE L E F GP+ SI+I D + N +V F + KD E
Sbjct: 10 TASLYVGDLHPDVTEAMLYEKFSPAGPILSIRIC---RDLITSGSSNYAYVNFQHTKDAE 66
Query: 255 RALKYLNGKDVQSYEMKLGWGKSVP 279
AL +N ++ +++ W + P
Sbjct: 67 HALDTMNFDVIKGKPVRIMWSQRDP 91
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGE 254
NLY+ NL+ I +++L + F +G + S K+M E R + GFV F + ++
Sbjct: 293 VVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM-----EGGRSKGFGFVCFSSPEEAT 347
Query: 255 RALKYLNGKDVQS 267
+A+ +NG+ V +
Sbjct: 348 KAVTEMNGRIVAT 360
Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
N+++ NL+ I + L + +G + S ++ DE ++G GFV F + ERA
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVC---DENGSKG--YGFVHFETHEAAERA 154
Query: 257 LKYLNGKDVQSYEMKLGWGKS 277
+K +NG + ++ +G KS
Sbjct: 155 IKKMNGMLLNGRKVFVGQFKS 175
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G LN + TE+ L ++F +YG +A + ++ D E R R GFV F N +D + A+
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVV---KDRESKRSRGFGFVTFENPEDAKDAM 64
Query: 258 KYLNGKDVQSYEMKL 272
+NGK V ++++
Sbjct: 65 MAMNGKSVDGRQIRV 79
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKD 252
P + +LY+G L+P +TE L E+F G +ASI++ D R +V + N D
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVC---RDAVTRRSLGYAYVNYNNTAD 108
Query: 253 GERALKYLNGKDVQSYEMKLGWGKSVP 279
GERAL+ LN ++ ++ W + P
Sbjct: 109 GERALEDLNYTLIKGRPCRIMWSQRDP 135
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 10/92 (10%)
Query: 182 EETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRN 241
EE K +F TN+Y+ N++ TE++ ++F ++G + S + D E + R
Sbjct: 229 EEMKANF-------TNVYVKNIDQDTTEEEFRDLFEKFGEITSATLA---RDAESGKSRG 278
Query: 242 CGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273
GFV F + + A++ LN KD + ++ +G
Sbjct: 279 FGFVNFTSHDNAAAAVEALNDKDFKGQKLYVG 310
Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
N+++ NL+ I + L + F +G + S K+ + +E + GFV + + + A
Sbjct: 144 NVFIKNLDTAIDNKALHDTFAAFGNILSCKV----AQDEFGNSKGYGFVHYETAEAAQNA 199
Query: 257 LKYLNG 262
+K++NG
Sbjct: 200 IKHVNG 205
Score = 34.7 bits (78), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIM 228
NLY+ NL+ I +++L E+F YG + S K+M
Sbjct: 340 VNLYIKNLSDDIDDEKLRELFSSYGTITSAKVM 372
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 174 PSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSD 233
P A+ + + P + +LY+G L+P +TE L E+F G +ASI++ D
Sbjct: 30 PEVTAVESASPSATPSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVC---RD 86
Query: 234 EEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVP 279
R +V + N DGERAL+ LN ++ ++ W + P
Sbjct: 87 AVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDP 132
Score = 42.0 bits (97), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 51/92 (55%), Gaps = 11/92 (11%)
Query: 182 EETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRN 241
EE K +F TN+Y+ N++ ++T+++ ++F ++G + S + S +++ + R
Sbjct: 226 EEMKANF-------TNVYIKNIDQEVTDEEFRKMFEKFGEITSATL----SRDQEGKSRG 274
Query: 242 CGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273
GFV F + A+ +N K+++ ++ +G
Sbjct: 275 FGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVG 306
Score = 34.7 bits (78), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
N+++ NL+ I + L + F +G + S K+ + +E + GFV + + A
Sbjct: 141 NVFIKNLDAAIDNKALHDTFAAFGNILSCKV----AQDEFGNSKGYGFVHYETAEAANNA 196
Query: 257 LKYLNG 262
+K++NG
Sbjct: 197 IKHVNG 202
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 179 IYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKAR 238
I +++ + FD TN+Y+ N+NP++T+ + +F +YG + S + D+E +
Sbjct: 225 IPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLA---RDQETGK 281
Query: 239 GRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273
R GFV F + +D +A++ LN K+ + +G
Sbjct: 282 SRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVG 316
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDG 253
+ +LY+G L+P +TE L E+F + G +ASI++ D R +V + DG
Sbjct: 59 ASASLYVGELDPSVTEAMLFELFSQIGSVASIRVC---RDAVTRRSLGYAYVNYNTTADG 115
Query: 254 ERALKYLNGKDVQSYEMKLGWGKSVP 279
E+AL+ LN ++ ++ W + P
Sbjct: 116 EKALEELNYTLIKGRPCRIMWSQRDP 141
Score = 36.2 bits (82), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
N+++ NL+ I + L + F +G + S K+ + +E + GFV + + +A
Sbjct: 150 NVFIKNLDVAIDNKALHDTFAAFGNILSCKV----AQDENGNSKGYGFVHYETDEAASQA 205
Query: 257 LKYLNGKDVQSYEMKLGWGKSVP 279
+K++NG + E K+ G +P
Sbjct: 206 IKHVNGMLLN--EKKVYVGHHIP 226
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 24/33 (72%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIM 228
NLY+ NL+ ++ +++L ++F +GP+ S K+M
Sbjct: 346 VNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVM 378
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 189 DSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFM 248
++ P + +LY+G L+P +TE L E+F G +ASI++ D R +V +
Sbjct: 42 NASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVC---RDAVTRRSLGYAYVNYN 98
Query: 249 NRKDGERALKYLNGKDVQSYEMKLGWGKSVP 279
N DGERAL+ LN ++ ++ W + P
Sbjct: 99 NTADGERALEDLNYTLIKGKPCRIMWSQRDP 129
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 11/92 (11%)
Query: 182 EETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRN 241
EE K +F TN+Y+ N++ +TE++ E+F ++G + S + S +++ + R
Sbjct: 223 EEMKANF-------TNVYIKNIDQDVTEEEFRELFEKFGEITSATL----SRDQEGKSRG 271
Query: 242 CGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273
GFV F + + A+ +N K++++ ++ +G
Sbjct: 272 FGFVNFSTHESAQAAVDEMNEKEIRTQKLYVG 303
Score = 37.0 bits (84), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 9/50 (18%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIM---------WPRSDEEK 236
NLY+ NL + +++L E+FG YG + S K+M P SD+EK
Sbjct: 333 VNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDTNIERTQTPESDKEK 382
Score = 34.7 bits (78), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
N+++ NL+ I + L + F +G + S K+ + +E + GFV + + A
Sbjct: 138 NVFIKNLDSAIDNKALHDTFAAFGNILSCKV----AQDEFGNSKGYGFVHYETAEAANNA 193
Query: 257 LKYLNG 262
+K++NG
Sbjct: 194 IKHVNG 199
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ N + +++L E FG+YG S+K+M D K+RG GFV+F +D ++
Sbjct: 191 TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMT--DDHGKSRG--FGFVSFERHEDAQK 246
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ +NGKD+ + +G
Sbjct: 247 AVDDMNGKDLNGKAIFVG 264
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
+LY+G+L+P +TE L E F GP+ SI++ D R +V F D ER
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAER 67
Query: 256 ALKYLNGKDVQSYEMKLGWGKSVP 279
AL +N ++ +++ W + P
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDP 91
Score = 42.0 bits (97), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 37/151 (24%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
NLY+ NL+ I +++L + F +G + S K+M E R + GFV F + ++ +
Sbjct: 294 VNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMM-----EGGRSKGFGFVCFSSPEEATK 348
Query: 256 ALKYLNGKDVQSYEMKLGWGK------------------SVPIPSYPIYIPPKMLELTVP 297
A+ +NG+ V + + + + SV +P+ P+ P +
Sbjct: 349 AVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRVPN-PVINPYQ------- 400
Query: 298 PPPSGLPFNAQPASKDKH------RIPKLRP 322
PPPS A P ++++ +I +LRP
Sbjct: 401 PPPSSYFMAAIPPAQNRAAYYPPGQIAQLRP 431
Score = 40.0 bits (92), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
N+++ NL+ I + L + F +G + S K++ DE ++G GFV F ++ ERA
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVV---CDENGSKG--YGFVHFETQEAAERA 154
Query: 257 LKYLNGKDVQSYEMKLGWGKS 277
+ +NG + ++ +G KS
Sbjct: 155 IDKMNGMLLNDRKVFVGRFKS 175
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKD 252
P + +LY+G L+P +TE L E+F G +ASI++ D R +V + N D
Sbjct: 49 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVC---RDAVTRRSLGYAYVNYNNTAD 105
Query: 253 GERALKYLNGKDVQSYEMKLGWGKSVP 279
GERAL+ LN ++ ++ W + P
Sbjct: 106 GERALEDLNYTLIKGKPCRIMWSQRDP 132
Score = 42.0 bits (97), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 51/92 (55%), Gaps = 11/92 (11%)
Query: 182 EETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRN 241
EE K +F TN+Y+ N++ ++T+++ ++F ++G + S + S +++ + R
Sbjct: 226 EEMKANF-------TNVYIKNIDQEVTDEEFRKMFEKFGEITSATL----SRDQEGKSRG 274
Query: 242 CGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273
GFV F + A+ +N K+++ ++ +G
Sbjct: 275 FGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVG 306
Score = 34.7 bits (78), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
N+++ NL+ I + L + F +G + S K+ + +E + GFV + + A
Sbjct: 141 NVFIKNLDAAIDNKALHDTFAAFGNILSCKV----AQDEFGNSKGYGFVHYETAEAANNA 196
Query: 257 LKYLNG 262
+K++NG
Sbjct: 197 IKHVNG 202
>sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator csx1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=csx1 PE=1 SV=1
Length = 632
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 10/92 (10%)
Query: 190 SGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMN 249
S DP T +++G L ++E+ L F +G + +IKI + G+ CGFV +
Sbjct: 291 SMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPF---------GKGCGFVQYSE 341
Query: 250 RKDGERALKYLNGKDVQSYEMKLGWG-KSVPI 280
+ E+A+ + G V + ++L WG ++P+
Sbjct: 342 KSAAEKAINTMQGALVGTSHIRLAWGHNTLPV 373
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKD 252
P + +LY+G L+P +TE L E+F G +ASI++ D R +V + N D
Sbjct: 51 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVC---RDAVTRRSLGYAYVNYNNTAD 107
Query: 253 GERALKYLNGKDVQSYEMKLGWGKSVP 279
GERAL+ LN ++ ++ W + P
Sbjct: 108 GERALEDLNYTLIKGKPCRIMWSQRDP 134
Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 11/92 (11%)
Query: 182 EETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRN 241
EE K +F TN+Y+ NL+ +I + + ++F ++G + S + S +++ + R
Sbjct: 228 EEMKANF-------TNVYIKNLDSEIDDDEFRKMFEKFGEITSATL----SRDQEGKSRG 276
Query: 242 CGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273
GFV F + + A++ +N K+++S ++ +G
Sbjct: 277 FGFVNFSTHESAQAAVEEMNDKEIRSQKLYVG 308
Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIM 228
NLY+ NL I +++L E+FG YG + S K+M
Sbjct: 338 VNLYVKNLTDDIDDEKLRELFGPYGTITSAKVM 370
Score = 33.9 bits (76), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
N+++ NL+ I + L + F +G + S K+ + +E + GFV + + A
Sbjct: 143 NVFIKNLDSAIDNKALHDTFAAFGNILSCKV----AQDEFGNSKGYGFVHYETAEAANNA 198
Query: 257 LKYLNG 262
+K++NG
Sbjct: 199 IKHVNG 204
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKD 252
P + +LY+G L+P +TE L E+F G +ASI++ D R +V + N D
Sbjct: 45 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVC---RDAVTRRSLGYAYVNYNNTAD 101
Query: 253 GERALKYLNGKDVQSYEMKLGWGKSVP 279
GERAL+ LN ++ ++ W + P
Sbjct: 102 GERALEDLNYTLIKGKPCRIMWSQRDP 128
Score = 42.7 bits (99), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 51/92 (55%), Gaps = 11/92 (11%)
Query: 182 EETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRN 241
EE K +F TN+Y+ NL+ +I+E++ ++F ++G + S + S +++ + R
Sbjct: 222 EEMKANF-------TNVYIKNLDQEISEEEFRQMFEKFGEITSATL----SRDQEGKSRG 270
Query: 242 CGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273
GFV + + A+ +N K+V+ ++ +G
Sbjct: 271 FGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVG 302
Score = 34.3 bits (77), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
N+++ NL+ I + L + F +G + S K+ + +E + GFV + + A
Sbjct: 137 NVFIKNLDAAIDNKALHDTFAAFGNILSCKV----AQDEFGNSKGYGFVHYETAEAANNA 192
Query: 257 LKYLNG 262
+K++NG
Sbjct: 193 IKHVNG 198
>sp|Q63627|SFR15_RAT Splicing factor, arginine/serine-rich 15 (Fragment) OS=Rattus
norvegicus GN=Scaf4 PE=2 SV=1
Length = 1048
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 11/83 (13%)
Query: 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDG 253
C+T L++G L+ + T+Q + + +GP+ SI ++ P R C ++ ++R+D
Sbjct: 420 CSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPP---------RGCAYIVMVHRQDA 470
Query: 254 ERALKYLNGKD--VQSYEMKLGW 274
RAL+ L+ + V +K+ W
Sbjct: 471 YRALQKLSRGNYKVNQKSIKIAW 493
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 306,406,165
Number of Sequences: 539616
Number of extensions: 13979701
Number of successful extensions: 72056
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 1559
Number of HSP's that attempted gapping in prelim test: 59399
Number of HSP's gapped (non-prelim): 11025
length of query: 806
length of database: 191,569,459
effective HSP length: 126
effective length of query: 680
effective length of database: 123,577,843
effective search space: 84032933240
effective search space used: 84032933240
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 66 (30.0 bits)