Query psy17497
Match_columns 806
No_of_seqs 589 out of 2724
Neff 5.9
Searched_HMMs 46136
Date Sat Aug 17 00:02:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17497.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17497hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0151|consensus 100.0 5E-142 1E-146 1185.7 41.6 666 14-726 2-681 (877)
2 smart00582 RPR domain present 99.9 4.3E-23 9.3E-28 194.6 10.7 119 466-596 2-120 (121)
3 KOG2669|consensus 99.8 9.7E-19 2.1E-23 187.6 11.4 129 459-600 2-130 (325)
4 cd03562 CID CID (CTD-Interacti 99.7 4.1E-16 8.9E-21 145.9 10.7 108 466-589 7-114 (114)
5 PF01805 Surp: Surp module; I 99.6 1.8E-16 3.9E-21 130.0 5.5 54 353-406 1-54 (55)
6 smart00648 SWAP Suppressor-of- 99.6 1.8E-15 4E-20 123.6 5.5 52 355-407 2-53 (54)
7 PLN03134 glycine-rich RNA-bind 99.6 2.4E-14 5.1E-19 139.9 14.1 84 194-280 33-116 (144)
8 KOG4368|consensus 99.5 1.3E-13 2.7E-18 154.2 13.1 134 455-602 98-237 (757)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 3.4E-13 7.3E-18 148.5 13.1 82 194-278 268-349 (352)
10 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 3.2E-13 7E-18 148.6 10.5 81 195-278 3-83 (352)
11 PF00076 RRM_1: RNA recognitio 99.4 5.5E-13 1.2E-17 111.7 8.7 70 198-271 1-70 (70)
12 TIGR01645 half-pint poly-U bin 99.4 1.4E-12 3.1E-17 152.2 12.1 122 131-275 63-184 (612)
13 TIGR01659 sex-lethal sex-letha 99.4 1.2E-12 2.6E-17 144.9 11.0 85 190-277 102-186 (346)
14 KOG0122|consensus 99.4 1.4E-12 3E-17 133.9 10.2 83 193-278 187-269 (270)
15 TIGR01645 half-pint poly-U bin 99.3 4.6E-12 1E-16 148.0 11.7 82 194-278 203-284 (612)
16 PF04818 CTD_bind: RNA polymer 99.3 6.8E-13 1.5E-17 112.0 2.8 64 515-588 1-64 (64)
17 KOG0121|consensus 99.3 3.3E-12 7.1E-17 119.8 7.3 81 193-276 34-114 (153)
18 KOG0148|consensus 99.3 1.2E-11 2.6E-16 128.6 10.3 84 189-281 158-241 (321)
19 TIGR01659 sex-lethal sex-letha 99.3 2E-11 4.4E-16 135.2 12.9 85 194-281 192-278 (346)
20 TIGR01628 PABP-1234 polyadenyl 99.2 8.3E-11 1.8E-15 138.2 15.7 82 193-278 283-364 (562)
21 PLN03120 nucleic acid binding 99.2 5E-11 1.1E-15 125.6 11.9 79 195-280 4-82 (260)
22 KOG0107|consensus 99.2 1.9E-11 4E-16 120.3 7.9 78 194-279 9-86 (195)
23 KOG4207|consensus 99.2 2.1E-11 4.6E-16 122.5 8.3 84 194-280 12-95 (256)
24 PLN03213 repressor of silencin 99.2 2.3E-11 4.9E-16 134.3 9.3 78 194-278 9-88 (759)
25 KOG0111|consensus 99.2 7.6E-12 1.6E-16 126.5 4.8 86 194-282 9-94 (298)
26 PF14259 RRM_6: RNA recognitio 99.2 4.7E-11 1E-15 101.1 9.0 70 198-271 1-70 (70)
27 KOG0113|consensus 99.2 5.2E-11 1.1E-15 125.3 10.7 86 191-280 98-183 (335)
28 KOG0149|consensus 99.2 6.1E-11 1.3E-15 121.6 10.7 84 190-277 7-90 (247)
29 TIGR01622 SF-CC1 splicing fact 99.2 4.5E-11 9.8E-16 136.6 10.8 82 193-277 184-265 (457)
30 TIGR01628 PABP-1234 polyadenyl 99.2 4.3E-11 9.3E-16 140.6 10.5 79 196-277 1-79 (562)
31 KOG0125|consensus 99.2 9.9E-11 2.1E-15 124.5 10.4 81 194-279 95-175 (376)
32 TIGR01642 U2AF_lg U2 snRNP aux 99.2 1.3E-10 2.9E-15 134.4 11.6 83 194-279 294-376 (509)
33 KOG0148|consensus 99.2 5.3E-11 1.1E-15 123.8 7.2 82 195-279 62-143 (321)
34 KOG0124|consensus 99.1 5.8E-11 1.3E-15 127.2 7.3 76 195-273 113-188 (544)
35 smart00362 RRM_2 RNA recogniti 99.1 2.8E-10 6.2E-15 93.8 9.5 72 197-273 1-72 (72)
36 KOG0126|consensus 99.1 1.1E-11 2.4E-16 122.4 0.9 85 193-280 33-117 (219)
37 COG0724 RNA-binding proteins ( 99.1 1.9E-10 4E-15 117.9 10.0 80 195-277 115-194 (306)
38 KOG0145|consensus 99.1 1.6E-10 3.5E-15 119.4 9.1 86 191-279 37-122 (360)
39 TIGR01648 hnRNP-R-Q heterogene 99.1 4.1E-10 9E-15 131.5 12.6 76 194-280 232-309 (578)
40 TIGR01648 hnRNP-R-Q heterogene 99.1 2.5E-10 5.5E-15 133.3 10.0 78 194-275 57-135 (578)
41 PLN03121 nucleic acid binding 99.1 9.8E-10 2.1E-14 114.4 12.7 76 193-275 3-78 (243)
42 TIGR01622 SF-CC1 splicing fact 99.1 4.8E-10 1E-14 128.2 10.9 82 192-277 86-167 (457)
43 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 5.9E-10 1.3E-14 128.9 11.7 81 192-280 272-353 (481)
44 smart00360 RRM RNA recognition 99.1 6.1E-10 1.3E-14 91.3 8.2 71 200-273 1-71 (71)
45 KOG0108|consensus 99.0 5.5E-10 1.2E-14 126.2 9.5 82 196-280 19-100 (435)
46 KOG0114|consensus 99.0 9.5E-10 2.1E-14 100.0 8.7 76 195-276 18-93 (124)
47 cd00590 RRM RRM (RNA recogniti 99.0 2.3E-09 4.9E-14 88.8 9.7 74 197-274 1-74 (74)
48 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 1.4E-09 3E-14 125.9 10.9 76 195-279 2-79 (481)
49 KOG0131|consensus 99.0 5.4E-10 1.2E-14 110.8 5.9 79 195-276 9-87 (203)
50 KOG0105|consensus 99.0 7.9E-10 1.7E-14 109.6 6.9 81 193-279 4-84 (241)
51 KOG0117|consensus 99.0 1.6E-09 3.5E-14 119.3 10.0 81 193-276 81-162 (506)
52 PF12243 CTK3: CTD kinase subu 99.0 4.4E-09 9.5E-14 102.0 11.8 132 461-600 5-136 (139)
53 KOG0145|consensus 98.9 4.2E-09 9.1E-14 109.1 10.6 80 195-277 278-357 (360)
54 PF13893 RRM_5: RNA recognitio 98.9 5E-09 1.1E-13 85.5 8.5 56 212-275 1-56 (56)
55 KOG0130|consensus 98.9 2E-09 4.3E-14 102.1 6.7 84 194-280 71-154 (170)
56 KOG0144|consensus 98.9 2.5E-09 5.5E-14 117.3 7.6 87 189-278 28-117 (510)
57 KOG0117|consensus 98.9 2.8E-09 6.1E-14 117.4 7.7 74 195-279 259-332 (506)
58 KOG0144|consensus 98.9 1.8E-09 3.9E-14 118.4 5.5 83 193-279 122-207 (510)
59 KOG0131|consensus 98.9 2.3E-09 4.9E-14 106.4 5.7 86 194-282 95-181 (203)
60 KOG0153|consensus 98.9 4.7E-09 1E-13 112.8 8.2 79 190-277 223-302 (377)
61 KOG0415|consensus 98.8 7.6E-09 1.6E-13 111.0 8.8 86 192-280 236-321 (479)
62 KOG0132|consensus 98.8 5.9E-09 1.3E-13 121.0 8.0 82 191-281 417-498 (894)
63 KOG0127|consensus 98.8 1.1E-08 2.4E-13 114.9 9.2 81 193-276 290-376 (678)
64 KOG0146|consensus 98.8 4.6E-09 9.9E-14 109.2 5.5 87 190-279 280-366 (371)
65 KOG0109|consensus 98.8 7.5E-09 1.6E-13 108.9 7.1 75 196-281 3-77 (346)
66 smart00361 RRM_1 RNA recogniti 98.8 1.5E-08 3.3E-13 86.8 7.7 61 209-272 2-69 (70)
67 KOG0127|consensus 98.7 2E-08 4.3E-13 112.9 8.3 81 195-279 117-197 (678)
68 KOG0147|consensus 98.7 1.3E-08 2.8E-13 115.0 6.3 78 197-277 280-357 (549)
69 KOG4206|consensus 98.7 3.5E-08 7.6E-13 101.3 8.2 78 196-279 10-91 (221)
70 KOG0109|consensus 98.6 3.8E-08 8.2E-13 103.7 6.1 75 193-278 76-150 (346)
71 TIGR01642 U2AF_lg U2 snRNP aux 98.6 1.1E-07 2.3E-12 110.3 10.2 85 192-276 406-500 (509)
72 KOG0123|consensus 98.5 1.5E-07 3.3E-12 105.3 8.2 75 196-279 2-76 (369)
73 KOG4208|consensus 98.5 2E-07 4.4E-12 94.5 7.9 81 193-276 47-128 (214)
74 KOG1457|consensus 98.5 6.5E-07 1.4E-11 91.5 10.5 86 195-282 34-122 (284)
75 KOG4661|consensus 98.5 2E-07 4.4E-12 104.9 7.2 83 195-280 405-487 (940)
76 KOG0124|consensus 98.5 3E-07 6.5E-12 99.2 8.2 79 195-276 210-288 (544)
77 KOG0110|consensus 98.5 1.3E-07 2.8E-12 109.5 5.6 91 187-280 605-695 (725)
78 KOG0123|consensus 98.4 5.1E-07 1.1E-11 101.1 7.8 75 198-278 79-153 (369)
79 KOG0110|consensus 98.3 1.1E-06 2.5E-11 102.0 8.3 82 195-276 515-596 (725)
80 KOG0533|consensus 98.3 2.4E-06 5.1E-11 90.2 9.3 86 192-281 80-165 (243)
81 KOG4212|consensus 98.3 1.8E-06 4E-11 95.1 8.5 76 195-274 44-120 (608)
82 KOG4212|consensus 98.3 1.3E-06 2.8E-11 96.3 6.8 76 192-275 533-608 (608)
83 KOG1548|consensus 98.2 3.5E-06 7.7E-11 91.0 8.3 83 192-278 131-221 (382)
84 KOG0226|consensus 98.2 2E-06 4.4E-11 89.6 5.1 78 193-273 188-265 (290)
85 KOG0146|consensus 98.1 3.9E-06 8.5E-11 87.8 6.1 81 194-278 18-101 (371)
86 KOG0106|consensus 98.1 3.2E-06 6.9E-11 87.6 4.3 72 196-278 2-73 (216)
87 KOG4209|consensus 98.1 1.2E-05 2.6E-10 84.8 8.6 83 192-278 98-180 (231)
88 KOG4205|consensus 98.0 3.9E-06 8.5E-11 91.7 4.9 82 194-279 5-86 (311)
89 KOG1847|consensus 98.0 2E-06 4.4E-11 98.3 1.4 65 343-409 178-242 (878)
90 KOG4660|consensus 98.0 6.4E-06 1.4E-10 93.8 5.3 72 192-271 72-143 (549)
91 KOG0151|consensus 97.9 2.4E-05 5.1E-10 91.0 8.3 77 617-708 597-679 (877)
92 KOG4205|consensus 97.9 1.8E-05 3.8E-10 86.7 5.8 83 194-280 96-178 (311)
93 KOG0116|consensus 97.9 2.2E-05 4.7E-10 89.0 6.6 79 195-277 288-366 (419)
94 KOG4454|consensus 97.8 8.4E-06 1.8E-10 83.4 2.2 78 193-275 7-84 (267)
95 KOG1190|consensus 97.7 0.00017 3.7E-09 79.6 10.9 78 195-280 297-375 (492)
96 KOG0132|consensus 97.7 6.7E-05 1.5E-09 88.2 7.8 130 463-603 4-139 (894)
97 COG5175 MOT2 Transcriptional r 97.7 0.00017 3.6E-09 77.9 9.7 83 194-277 113-202 (480)
98 KOG1457|consensus 97.6 5.7E-05 1.2E-09 77.7 4.1 69 191-266 206-274 (284)
99 KOG4206|consensus 97.6 0.00023 5E-09 73.6 8.2 80 189-276 140-220 (221)
100 PF04059 RRM_2: RNA recognitio 97.5 0.00048 1E-08 63.3 8.9 80 196-278 2-87 (97)
101 KOG1995|consensus 97.3 0.00027 6E-09 77.3 5.0 85 192-279 63-155 (351)
102 PF11608 Limkain-b1: Limkain b 97.3 0.0011 2.4E-08 59.0 7.7 68 196-276 3-75 (90)
103 KOG0120|consensus 97.0 0.0005 1.1E-08 79.2 3.9 82 195-279 289-370 (500)
104 KOG4210|consensus 96.9 0.00066 1.4E-08 73.9 3.7 84 193-280 183-266 (285)
105 KOG4211|consensus 96.9 0.0054 1.2E-07 69.7 10.4 77 195-278 10-86 (510)
106 KOG0106|consensus 96.9 0.00066 1.4E-08 70.6 3.0 70 192-272 96-165 (216)
107 KOG0147|consensus 96.8 0.00066 1.4E-08 77.7 2.4 79 194-276 178-256 (549)
108 KOG1855|consensus 96.7 0.0017 3.7E-08 72.4 4.5 77 188-264 224-310 (484)
109 PF08777 RRM_3: RNA binding mo 96.4 0.0072 1.6E-07 56.4 6.1 59 196-263 2-60 (105)
110 KOG0120|consensus 96.3 0.01 2.2E-07 68.7 7.9 65 211-275 425-489 (500)
111 KOG0112|consensus 96.2 0.009 2E-07 72.0 7.1 82 193-283 453-536 (975)
112 KOG3152|consensus 96.2 0.0032 6.9E-08 66.3 2.9 75 194-269 73-157 (278)
113 KOG1456|consensus 96.1 0.019 4.1E-07 63.3 8.3 77 195-279 120-200 (494)
114 KOG1190|consensus 96.1 0.014 2.9E-07 65.1 7.2 81 190-277 409-490 (492)
115 KOG1456|consensus 95.9 0.04 8.7E-07 60.9 9.8 83 191-281 283-366 (494)
116 KOG4849|consensus 95.8 0.044 9.4E-07 60.0 9.4 76 197-275 82-160 (498)
117 PF14605 Nup35_RRM_2: Nup53/35 95.7 0.021 4.6E-07 46.7 5.2 52 196-257 2-53 (53)
118 KOG1548|consensus 95.5 0.035 7.5E-07 60.9 7.5 74 194-274 264-348 (382)
119 KOG2314|consensus 95.1 0.034 7.4E-07 64.2 6.1 76 195-274 58-140 (698)
120 KOG0129|consensus 95.1 0.047 1E-06 62.7 7.0 64 194-260 258-326 (520)
121 KOG2193|consensus 95.0 0.02 4.4E-07 63.9 3.9 74 196-278 2-76 (584)
122 KOG0112|consensus 95.0 0.0074 1.6E-07 72.7 0.4 81 193-277 370-450 (975)
123 cd00197 VHS_ENTH_ANTH VHS, ENT 94.9 0.13 2.8E-06 48.2 8.6 100 475-583 16-115 (115)
124 PF05172 Nup35_RRM: Nup53/35/4 94.9 0.098 2.1E-06 48.5 7.3 78 195-276 6-90 (100)
125 KOG4211|consensus 94.5 0.093 2E-06 60.0 7.6 77 194-274 102-178 (510)
126 KOG4307|consensus 94.4 0.1 2.3E-06 61.5 7.9 76 195-274 867-943 (944)
127 KOG2416|consensus 94.3 0.093 2E-06 61.1 7.0 80 192-280 441-524 (718)
128 KOG0129|consensus 94.3 0.091 2E-06 60.4 6.8 63 194-259 369-432 (520)
129 KOG4676|consensus 94.1 0.18 3.9E-06 56.2 8.4 79 197-276 9-88 (479)
130 PF08952 DUF1866: Domain of un 94.1 0.2 4.4E-06 49.3 7.9 56 211-278 52-107 (146)
131 PF15023 DUF4523: Protein of u 93.8 0.2 4.3E-06 49.1 7.2 76 190-276 81-160 (166)
132 KOG1365|consensus 93.8 0.91 2E-05 50.7 13.0 75 195-273 280-357 (508)
133 KOG2071|consensus 93.7 0.18 4E-06 59.1 8.1 102 465-582 8-110 (579)
134 KOG1996|consensus 93.2 0.18 4E-06 54.3 6.4 63 210-275 301-364 (378)
135 PF04847 Calcipressin: Calcipr 92.5 0.37 8E-06 49.5 7.4 64 208-280 8-73 (184)
136 KOG1847|consensus 91.7 0.12 2.6E-06 60.5 2.9 61 343-406 416-476 (878)
137 KOG2068|consensus 91.5 0.086 1.9E-06 57.9 1.5 80 196-278 78-163 (327)
138 KOG0128|consensus 91.3 0.021 4.5E-07 68.7 -3.8 69 195-266 667-735 (881)
139 KOG0115|consensus 91.0 0.47 1E-05 50.5 6.3 64 196-263 32-95 (275)
140 KOG2202|consensus 90.7 0.13 2.7E-06 54.7 1.8 61 211-275 84-145 (260)
141 KOG0128|consensus 89.8 0.28 6E-06 59.5 3.7 79 195-277 736-814 (881)
142 KOG4574|consensus 88.6 0.37 8E-06 58.3 3.6 74 198-280 301-376 (1007)
143 KOG0105|consensus 86.8 1.6 3.4E-05 44.6 6.3 63 194-266 114-176 (241)
144 PF08675 RNA_bind: RNA binding 84.9 3.5 7.6E-05 37.2 6.8 56 195-261 8-63 (87)
145 KOG4285|consensus 84.6 2.7 5.8E-05 45.9 7.1 64 196-270 198-261 (350)
146 KOG2135|consensus 84.2 0.76 1.6E-05 52.6 3.0 77 194-280 371-448 (526)
147 PF00790 VHS: VHS domain; Int 81.3 7.5 0.00016 37.9 8.4 102 466-585 6-120 (140)
148 PF03467 Smg4_UPF3: Smg-4/UPF3 81.1 3.9 8.4E-05 41.7 6.5 85 195-280 7-100 (176)
149 PF03880 DbpA: DbpA RNA bindin 81.0 7.3 0.00016 33.8 7.3 67 197-275 2-74 (74)
150 KOG2253|consensus 79.9 1.5 3.2E-05 52.3 3.3 75 188-274 33-107 (668)
151 PF01417 ENTH: ENTH domain; I 78.0 10 0.00022 36.1 8.0 107 466-580 4-118 (125)
152 KOG1365|consensus 77.6 12 0.00026 42.3 9.2 70 195-269 161-234 (508)
153 KOG4307|consensus 77.1 1.7 3.6E-05 51.9 2.7 77 194-274 433-510 (944)
154 cd03561 VHS VHS domain family; 76.4 13 0.00029 35.9 8.3 76 491-584 32-113 (133)
155 PF07576 BRAP2: BRCA1-associat 76.2 19 0.00041 34.1 9.0 79 195-278 13-95 (110)
156 KOG0965|consensus 76.1 0.81 1.8E-05 54.9 -0.1 61 348-408 527-587 (988)
157 smart00288 VHS Domain present 73.4 17 0.00038 35.1 8.3 105 467-584 2-112 (133)
158 KOG4660|consensus 72.5 5.5 0.00012 46.8 5.3 82 195-279 388-474 (549)
159 PF10309 DUF2414: Protein of u 69.7 18 0.00039 30.9 6.4 53 196-260 6-62 (62)
160 cd03568 VHS_STAM VHS domain fa 68.7 24 0.00053 34.8 8.3 93 478-584 16-111 (144)
161 KOG2318|consensus 66.5 14 0.0003 43.8 6.8 81 193-273 172-301 (650)
162 KOG4210|consensus 66.3 3.5 7.6E-05 45.2 2.0 83 193-278 86-168 (285)
163 cd03567 VHS_GGA VHS domain fam 63.9 45 0.00097 32.8 9.0 109 466-583 2-116 (139)
164 KOG4454|consensus 61.1 3.7 8.1E-05 43.1 0.9 71 191-265 76-150 (267)
165 KOG4019|consensus 57.4 16 0.00034 37.6 4.6 77 195-280 10-92 (193)
166 KOG1924|consensus 51.2 28 0.00061 42.8 6.0 81 465-548 789-908 (1102)
167 KOG2891|consensus 48.4 5.2 0.00011 43.1 -0.4 69 196-264 150-246 (445)
168 KOG1924|consensus 47.9 29 0.00062 42.7 5.4 19 463-481 701-719 (1102)
169 KOG2591|consensus 47.5 33 0.00071 40.6 5.7 63 189-261 169-233 (684)
170 cd03569 VHS_Hrs_Vps27p VHS dom 46.9 77 0.0017 31.2 7.6 106 465-584 4-115 (142)
171 KOG0804|consensus 46.8 46 0.001 38.6 6.6 67 195-266 74-141 (493)
172 PF11767 SET_assoc: Histone ly 40.7 1.3E+02 0.0029 25.9 7.1 56 205-272 10-65 (66)
173 KOG2193|consensus 38.2 2.4 5.3E-05 48.0 -4.9 75 195-275 80-154 (584)
174 KOG4676|consensus 37.4 7.6 0.00017 43.9 -1.2 64 195-266 151-214 (479)
175 KOG4410|consensus 37.3 2.5E+02 0.0055 31.0 10.0 50 193-250 328-377 (396)
176 COG0724 RNA-binding proteins ( 30.7 61 0.0013 32.8 4.2 38 191-228 221-258 (306)
177 cd03565 VHS_Tom1 VHS domain fa 28.0 2.3E+02 0.005 27.8 7.5 84 490-584 32-116 (141)
178 PF05918 API5: Apoptosis inhib 27.2 1.8E+02 0.0039 35.1 7.7 52 457-508 52-108 (556)
179 PF14733 ACDC: AP2-coincident 24.9 71 0.0015 28.9 3.0 20 514-533 8-27 (91)
180 PF12348 CLASP_N: CLASP N term 23.5 3.8E+02 0.0083 27.5 8.6 111 476-601 24-142 (228)
181 KOG4365|consensus 20.8 19 0.0004 41.4 -1.9 81 195-279 3-83 (572)
No 1
>KOG0151|consensus
Probab=100.00 E-value=5.1e-142 Score=1185.66 Aligned_cols=666 Identities=53% Similarity=0.895 Sum_probs=569.3
Q ss_pred HHhhhhccccccCCCCchhHHHHHHhhHHHHHHHHHHHHHHHHhcCCCCccccceeEEeccccCCCCccccccc-CcccC
Q psy17497 14 KLKAFSIGSMGAKRTLSKKEQEEQKKKEQEAAAAQAFEEFVATFQENPAAKTNKVWVKAGTYDAGRRREDTSEK-GKLYK 92 (806)
Q Consensus 14 kl~~f~~g~~~~k~~~~~kE~ee~kkkeee~~aa~~y~eFv~sF~~~~~~~~~k~FVr~g~~~~~~~~~~~~~~-g~~y~ 92 (806)
||.+|+||++. |+++++||.+++|||+.+.+||++|.|||++|.+.+..+ .|+||+|||++|+......+++ |+.
T Consensus 2 ~~~~f~i~~~s-~p~~~~re~e~~kkK~~~~~~a~~~~ef~~~f~~~~~~~-~k~fv~~gtina~~~r~~~d~~~~k~-- 77 (877)
T KOG0151|consen 2 KLDAFSIGSVS-KPKLSKRENEEEKKKEDAGAAARYYQEFVENFPKGDNVG-SKTFVEAGTINAAKARRKLDEKGGKK-- 77 (877)
T ss_pred ccccccccccc-ccchhhhhhHhhhcccchhhHHHHHHHHHHhccCCCCcc-ceeeeeccccccccccccchhhcccc--
Confidence 78999999998 899999999999999999999999999999997655444 8999999999999866555555 444
Q ss_pred CCcccccCcCCchhhHHHHHHHhcCCccchhHhhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccc-----ccc
Q psy17497 93 PQSRLQEDKDSSASKAEEYARLLGDKKTESQRLKKNNKIDIKKKSNLEMFKEELKMIQEEREERHKYKGVLK-----GVY 167 (806)
Q Consensus 93 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~Kk~~id~f~EELK~~QeereeR~~~k~~~~-----~~~ 167 (806)
++...++..+ .+...+..+.++ .+.|++.+ ++|++|||+|+||||++|++||+||+.+++.. ...
T Consensus 78 -k~~~~p~~~~------~~~~~~~~~~kk-~~~kk~~~--k~K~snle~FkeELkr~QE~Re~R~~~r~~~~~~~~d~~~ 147 (877)
T KOG0151|consen 78 -KSTEVPSFVE------PPTRLLVKDPKK-GPLKKKQE--KKKKSNLELFKEELKRIQEEREERHKDRHHLEDPQSDSAV 147 (877)
T ss_pred -cCCCCCCcCC------CcchhcccCCCC-Ccchhhhc--ccchhhHHHHHHHHHHHHHHHHHHhhhhhcccccccCcch
Confidence 2222221110 111223333333 34455544 78999999999999999999999999987642 233
Q ss_pred CcCCCCCchhhhhccccCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEe
Q psy17497 168 SEEAEPPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAF 247 (806)
Q Consensus 168 ~sr~~~p~~~~~~~~~~~gs~d~~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F 247 (806)
.+|+++.. +.....+.+|+++.+||.+||||||||++.++++.|...|++||+|.+|+|||||++.+..+.+.||||.|
T Consensus 148 s~r~~~~p-~~~~~s~~~gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvaf 226 (877)
T KOG0151|consen 148 SSRFDPLP-SRFDPSGRPGSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAF 226 (877)
T ss_pred hhccCCCc-cccCCCCCCCcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeee
Confidence 44544322 22222236799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHhCCceeCCeeEEEEeccCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy17497 248 MNRKDGERALKYLNGKDVQSYEMKLGWGKSVPIPSYPIYIPPKMLELTVPPPPSGLPFNAQPASKDKHRIPKLRPGEPLT 327 (806)
Q Consensus 248 ~~~~dAe~Ai~~LnG~~l~Gr~LrV~~ak~~~~p~~~~~~P~~~~~~~~Pp~psg~Pf~a~P~~~~~~~~~~~~~~~~~~ 327 (806)
+++.||++|+..|||..+.++.|+++||+++++|++++|+|+.+.+.+.|++++++||||||.+ ...+|.... .
T Consensus 227 mnR~D~era~k~lqg~iv~~~e~K~gWgk~V~ip~~p~~ipp~~h~~~lp~p~s~Lpfnaqp~p--~~~~pn~N~----e 300 (877)
T KOG0151|consen 227 MNRADAERALKELQGIIVMEYEMKLGWGKAVPIPNIPIYIPPPLHEATLPPPPSNLPFNAQPGP--PKSLPNQNA----E 300 (877)
T ss_pred hhhhhHHHHHHHhcceeeeeeeeeeccccccccCCccccCCChhhhccCCCCccCCcccCCCCc--cccCCCccc----c
Confidence 9999999999999999999999999999999999999999999999999999999999999986 222222111 1
Q ss_pred CcchhhHhhhcccceeeeecCCCHHHHHHHHHHHHHHHhcChHHHHHHHhhcCCCCCcccccCCCCCCCchhHHHHHHHh
Q psy17497 328 REDLDRLDQILNQAYVKVVVPTDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSIL 407 (806)
Q Consensus 328 ~~~~~~~~~~l~~~~V~v~~P~d~~~~~~Idk~a~~V~~~G~~FE~~l~~re~~np~F~FL~d~~sp~h~YYrwrl~s~~ 407 (806)
....+++.. +.|+||++..|+++||+||.||+++||+||++||+++.+||+|+|||+++++.|+||+||||||+
T Consensus 301 ~~~~edv~~------i~Vvip~d~~L~~vidrM~~fV~~egp~fea~im~re~~nplF~flfen~s~~htyyrwklySil 374 (877)
T KOG0151|consen 301 LVNTEDVED------ILVVIPTDRHLLMVIDRMAEFVVREGPMFEAMIMERERGNPLFSFLFENGSPAHTYYRWKLYSIL 374 (877)
T ss_pred ccCcCCccc------eeEecCchHHHHHHHHHHHHHHhccCccHHHHHHHhhccChhHHHHHhcCchHHHHHHHHHHHHH
Confidence 122233332 44999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccCccccccCCCCccCCCCCCCCCCCCCcchhhh---HHhhhhcCCCChHHHHHHHHHHhhcCcchHhHHHHH
Q psy17497 408 QGDQPKEWRTNEFRMFDGGSVWRPPPMNLFTQGMPDELVEE---EVESKTKGSLSNSQRHRLEDFLRNLTPERVKVAEAM 484 (806)
Q Consensus 408 ~gd~~~~w~~~~f~m~~~g~~w~PP~~~~~~~~~~~~~~~~---~~e~~~~~~L~~~~r~~Le~lL~~Lt~tr~sI~~~m 484 (806)
|||+++.|+++||+||+||++|+||++|+|.++||++++.+ ..+...++.|+.++|++|++||+.|||.|.+|++||
T Consensus 375 QgdT~~ewr~e~frmfknggrwipppin~~~~~mp~ee~~~t~a~~e~~~k~~Ltd~qRdklE~liR~LTpEk~sIg~aM 454 (877)
T KOG0151|consen 375 QGDTPQEWRTEPFRMFKNGGRWIPPPINNYRKGMPEEEERSTDAEGESEDKGALTDLQRDKLEDLIRGLTPEKSSIGDAM 454 (877)
T ss_pred cCCCHHHhhhhhhhhcccCceecCCCCCcccccCchhhhcccccccchhhhcccchHHHHHHHHHHHhcCcccchHHHHH
Confidence 99999999999999999999999999999999999876544 233567899999999999999999999999999999
Q ss_pred HHHhhcccchHHHHHHHHHHhhcccccchhhhhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy17497 485 VFCMEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASFYRRGFESRLFQIFTEMHITYVNLESR 564 (806)
Q Consensus 485 ~w~l~ha~~A~eIvd~i~~sl~~~~t~~~kKLa~LYLinDILhNs~~kv~na~~yr~~fe~~Lp~IF~~l~~~y~~~~gr 564 (806)
.|||+|+++|.|||+||+++|++..+++++||+||||||||||||.++|.|||.||..||..|+.||+.|+.+|++|.||
T Consensus 455 ~FalenA~aa~EI~eci~eSlt~~~t~~~kKiarLyLvsDIL~N~sarv~nas~YR~~FEa~L~~Ifd~l~~~yr~I~gR 534 (877)
T KOG0151|consen 455 VFALENADAAGEIVECITESLTNKETPLPKKIARLYLVSDILHNSSARVANASAYRKSFEATLEDIFDDLNDLYRSIGGR 534 (877)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhccccccCCHHHHHHHHHHHcCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCC-chhh
Q psy17497 565 LKAEGLRTRVMQVFRAWEDWAVYPKDYLIKLQNVFLGLSDAVPLDANNGNEEDEDLDGAPLSDVDGEDLDGVPLD-GAAL 643 (806)
Q Consensus 565 ~~ae~~k~kV~~VL~iWe~~~vfp~~~l~~L~~~f~g~~~~~~~~e~~~~~~~~didG~pi~~~~~~d~dgvPld-~~~~ 643 (806)
|+++.|+++|++||++|++|.|||.+||++|+++|+|... .+.+.+.+....||+|+|+.+ +.+|+||+|+| +.++
T Consensus 535 IkaE~fkqRV~kVirvWedW~ifpe~~l~~l~~~Flg~~~--~~~~~~se~~~~die~~~~a~-~eedldgvple~~~ag 611 (877)
T KOG0151|consen 535 IKAEAFKQRVMKVIRVWEDWAIFPEDFLIGLQNTFLGLNN--IVTEKESEADAPDIENAPLAG-NEEDLDGVPLEDEDAG 611 (877)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHhcCCC--CcccccccccchhhccCcccC-chhhccCCCchhhhcC
Confidence 9999999999999999999999999999999999999776 455555555668899999854 56899999998 4434
Q ss_pred hhhhccCCCCCCC-CCCCCCCCccccCcCCCcCCCCCCCCCCCCCCCCcc-ccCccCCCCccccCCC--cccccccCCcc
Q psy17497 644 MKSLQRLPHSSSA-PDEDDIDGVPCTYNITSATMDGEDLDGVPMDKVKPA-RAATFIPSKWETVEEN--EDSAVTSSKWD 719 (806)
Q Consensus 644 ~~~~~~~~~~~~~-~~~ddiDG~P~~~~~~~~~~~~~d~dg~p~~~~~~~-~~~~~~~SkWe~vd~~--e~~~~~~skw~ 719 (806)
+ |+. .-.|+|||+|+ ..+++|||+||.....+ ....-++|||++||+. +.|+++||||+
T Consensus 612 i---------p~~n~pi~eld~~~l--------~~dd~ldgipm~~e~~ss~s~~~~~sk~e~vd~~~~~~q~vstskwe 674 (877)
T KOG0151|consen 612 I---------PLMNTPIDELDGRPL--------NLDDDLDGIPMMVETKSSLSDPETPSKWEAVDESFKEGQAVSTSKWE 674 (877)
T ss_pred C---------ccccCchhhhccccc--------cccccccCceeeeeeccccCCCcccccccccCcccccccccchhhhh
Confidence 3 222 11489999996 35799999999976432 2223448999999999 99999999999
Q ss_pred ccccCCC
Q psy17497 720 DVEQSES 726 (806)
Q Consensus 720 ~~~~~~~ 726 (806)
+.++..+
T Consensus 675 ~~~~~~~ 681 (877)
T KOG0151|consen 675 HVDDEFE 681 (877)
T ss_pred hcccccc
Confidence 9887765
No 2
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=99.89 E-value=4.3e-23 Score=194.57 Aligned_cols=119 Identities=18% Similarity=0.343 Sum_probs=108.2
Q ss_pred HHHHHhhcCcchHhHHHHHHHHhhcccchHHHHHHHHHHhhcccccchhhhhhhhhhhhhhhhcccCCCChhhHHHHHHH
Q psy17497 466 LEDFLRNLTPERVKVAEAMVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASFYRRGFES 545 (806)
Q Consensus 466 Le~lL~~Lt~tr~sI~~~m~w~l~ha~~A~eIvd~i~~sl~~~~t~~~kKLa~LYLinDILhNs~~kv~na~~yr~~fe~ 545 (806)
|+++|++|++++.+|+++|.||++|+++|.+||++|.+++... +..+||++|||+|||||||..+ .+..|+..|..
T Consensus 2 f~~~L~~L~~s~~~I~~lt~~~~~~~~~a~~Iv~~i~~~~~~~--~~~~kL~~LYlindIl~n~~~~--~~~~f~~~~~~ 77 (121)
T smart00582 2 FEQKLESLNNSQESIQTLTKWAIEHASHAKEIVELWEKYIKKA--PPPRKLPLLYLLDSIVQNSKRK--YGSEFGDELGP 77 (121)
T ss_pred hHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CccceehhHHhHHHHHHHHhhc--cHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999774 4489999999999999999765 57789999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhccccccCCHHHHHHHH
Q psy17497 546 RLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWAVYPKDYLIKLQ 596 (806)
Q Consensus 546 ~Lp~IF~~l~~~y~~~~gr~~ae~~k~kV~~VL~iWe~~~vfp~~~l~~L~ 596 (806)
+++.+|.++.... .++++++|.+||++|++|.|||++++.+|+
T Consensus 78 ~~~~~~~~~~~~~--------~~~~~~ki~kll~iW~~~~iF~~~~i~~L~ 120 (121)
T smart00582 78 VFQDALRDVLGAA--------NDETKKKIRRLLNIWEERGIFPPSVLRPLR 120 (121)
T ss_pred HHHHHHHHHHHhC--------CHHHHHHHHHHHHHHhcCCCCCHHHHHHhh
Confidence 9999988765542 278999999999999999999999999997
No 3
>KOG2669|consensus
Probab=99.77 E-value=9.7e-19 Score=187.59 Aligned_cols=129 Identities=18% Similarity=0.324 Sum_probs=115.5
Q ss_pred ChHHHHHHHHHHhhcCcchHhHHHHHHHHhhcccchHHHHHHHHHHhhcccccchhhhhhhhhhhhhhhhcccCCCChhh
Q psy17497 459 SNSQRHRLEDFLRNLTPERVKVAEAMVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASF 538 (806)
Q Consensus 459 ~~~~r~~Le~lL~~Lt~tr~sI~~~m~w~l~ha~~A~eIvd~i~~sl~~~~t~~~kKLa~LYLinDILhNs~~kv~na~~ 538 (806)
.....+.|...|..|++|+++|+.+..|||.|..+|..||++|.+.|..... .+||.+|||+|||+|||.+ .+..
T Consensus 2 ~~fsee~l~~kL~~L~~TQeSIqtlS~Wli~hkk~a~~IV~~Wl~~~~~~~~--~~Kl~llYLaNDVvQnskr---k~~e 76 (325)
T KOG2669|consen 2 SAFSEEALEKKLAELSNTQESIQTLSLWLIHHKKHARLIVDVWLKELKKSSV--NHKLTLLYLANDVVQNSKR---KGPE 76 (325)
T ss_pred CcccHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccCC--CceeeehhhhHHHHHHhhh---cCch
Confidence 3455678999999999999999999999999999999999999999988555 9999999999999999944 5668
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhccccccCCHHHHHHHHHHHc
Q psy17497 539 YRRGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWAVYPKDYLIKLQNVFL 600 (806)
Q Consensus 539 yr~~fe~~Lp~IF~~l~~~y~~~~gr~~ae~~k~kV~~VL~iWe~~~vfp~~~l~~L~~~f~ 600 (806)
|...|..+++..|.|+.... ....|.+|.+||+||++|.||++.++..|+..|.
T Consensus 77 f~~ef~~v~~~a~~~i~~~~--------~~~~k~~l~Rl~nIw~eR~Vf~~~~~~~l~~~l~ 130 (325)
T KOG2669|consen 77 FVDEFWPVVLKAFAHIVEET--------DVKCKKKLGRLINIWEERNVFSPESLVDLEESLG 130 (325)
T ss_pred hHHHHHHHHHHHHHHHHHhc--------chhhhHHHHHHHHHHHHhccCCHHHHHHHHHHhc
Confidence 99999999999988866542 3556899999999999999999999999999987
No 4
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=99.66 E-value=4.1e-16 Score=145.87 Aligned_cols=108 Identities=24% Similarity=0.410 Sum_probs=90.6
Q ss_pred HHHHHhhcCcchHhHHHHHHHHhhcccchHHHHHHHHHHhhcccccchhhhhhhhhhhhhhhhcccCCCChhhHHHHHHH
Q psy17497 466 LEDFLRNLTPERVKVAEAMVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASFYRRGFES 545 (806)
Q Consensus 466 Le~lL~~Lt~tr~sI~~~m~w~l~ha~~A~eIvd~i~~sl~~~~t~~~kKLa~LYLinDILhNs~~kv~na~~yr~~fe~ 545 (806)
+...|..|+.++.+|+.++.||++|..+|.+||++|.+++... +..+||+.|||+|||++||..+ |...|..
T Consensus 7 ~l~~L~~~~~S~~~I~~lt~~a~~~~~~a~~iv~~i~~~i~~~--~~~~KL~~LYL~dsIvkn~~~~------~~~~~~~ 78 (114)
T cd03562 7 LLEKLTFNKNSQPSIQTLTKLAIENRKHAKEIVEIIEKHIKKC--PPEQKLPLLYLLDSIVKNVGRK------YKEFFSE 78 (114)
T ss_pred HHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CcccchHHHHHHHHHHHHcccc------hHHHHHH
Confidence 3334444545999999999999999999999999999999774 5599999999999999999765 6677888
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhccccccCCH
Q psy17497 546 RLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWAVYPK 589 (806)
Q Consensus 546 ~Lp~IF~~l~~~y~~~~gr~~ae~~k~kV~~VL~iWe~~~vfp~ 589 (806)
.++.+|.+ +|... .++.+++|.+||++|+++.+|+.
T Consensus 79 ~~~~~f~~---~~~~~-----~~~~r~kl~rl~~iW~~~~~f~~ 114 (114)
T cd03562 79 FLVPLFLD---AYEKV-----DEKTRKKLERLLNIWEERFVFGS 114 (114)
T ss_pred HHHHHHHH---HHHhC-----CHHHHHHHHHHHHHccCCCCCCC
Confidence 87888754 55444 48899999999999999999973
No 5
>PF01805 Surp: Surp module; InterPro: IPR000061 SWAP is derived from the Suppressor-of-White-APricot splicing regulator from Drosophila melanogaster. The domain is found in regulators responsible for pervasive, nonsex-specific alternative pre-mRNA splicing characteristics and has been found in splicing regulatory proteins []. These ancient, conserved SWAP proteins share a colinearly arrayed series of novel sequence motifs [].; GO: 0003723 RNA binding, 0006396 RNA processing; PDB: 2E5Z_A 2DT7_B 2DT6_A 1UG0_A 1X4P_A 2E60_A 1X4O_A 4DGW_B.
Probab=99.64 E-value=1.8e-16 Score=130.00 Aligned_cols=54 Identities=43% Similarity=0.865 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHhhcCCCCCcccccCCCCCCCchhHHHHHHH
Q psy17497 353 LLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSI 406 (806)
Q Consensus 353 ~~~~Idk~a~~V~~~G~~FE~~l~~re~~np~F~FL~d~~sp~h~YYrwrl~s~ 406 (806)
++.+|++||+||+++|++||++||+++.+||+|+||++.+||+|.||+|+|+++
T Consensus 1 ~~~~I~~tA~~Va~~G~~fE~~l~~~~~~np~F~FL~~~~~~~~~yY~~~l~~y 54 (55)
T PF01805_consen 1 LREIIDKTAEFVAKNGPEFEEKLRERERNNPQFNFLFPSDSPYHAYYRWKLAEY 54 (55)
T ss_dssp HHHHHHHHHHHHHHCSHHHHHHHHHHTTTSGGGGGGSTTSSTHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHhcCCCCCCcCcCCCCCCCchHHHHHHHHh
Confidence 478999999999999999999999999999999999988899999999999886
No 6
>smart00648 SWAP Suppressor-of-White-APricot splicing regulator. domain present in regulators which are responsible for pre-mRNA splicing processes
Probab=99.58 E-value=1.8e-15 Score=123.58 Aligned_cols=52 Identities=40% Similarity=0.720 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhcChHHHHHHHhhcCCCCCcccccCCCCCCCchhHHHHHHHh
Q psy17497 355 MLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSIL 407 (806)
Q Consensus 355 ~~Idk~a~~V~~~G~~FE~~l~~re~~np~F~FL~d~~sp~h~YYrwrl~s~~ 407 (806)
.+|++||.||+++|++||++||+++.+||+|+||++ ++|+|.||+|+|+++.
T Consensus 2 ~iI~~tA~~Va~~G~~fe~~l~~~~~~n~~F~FL~~-~~~~h~yy~~~l~~~~ 53 (54)
T smart00648 2 DIIDKTAQFVARNGPEFEAKLMERERNNPQFDFLKP-NDPYHAYYRKKLAEYR 53 (54)
T ss_pred cHHHHHHHHHHHhhHHHHHHHHHhcCCCCCCccCCC-CCCCcHHHHHHHHHHh
Confidence 589999999999999999999999999999999998 7899999999998875
No 7
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.58 E-value=2.4e-14 Score=139.90 Aligned_cols=84 Identities=24% Similarity=0.506 Sum_probs=79.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
.+++|||+|||+.+++++|+++|.+||.|.+|+|+ .+..+++++|||||+|.+.++|+.|+..|||..|+|+.|+|.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~---~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVI---VDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEE---ecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 46889999999999999999999999999999999 688899999999999999999999999999999999999999
Q ss_pred eccCCCC
Q psy17497 274 WGKSVPI 280 (806)
Q Consensus 274 ~ak~~~~ 280 (806)
|++..+.
T Consensus 110 ~a~~~~~ 116 (144)
T PLN03134 110 PANDRPS 116 (144)
T ss_pred eCCcCCC
Confidence 9986543
No 8
>KOG4368|consensus
Probab=99.50 E-value=1.3e-13 Score=154.16 Aligned_cols=134 Identities=18% Similarity=0.416 Sum_probs=106.6
Q ss_pred cCCCChHHHHHHHHHHhhc--CcchHhHHHHHHHHhhcccchHHHHHHHHHHhhccc----ccchhhhhhhhhhhhhhhh
Q psy17497 455 KGSLSNSQRHRLEDFLRNL--TPERVKVAEAMVFCMEHSDAAEEICECIMESLSNES----TALHKKIGRLYLVSDILHN 528 (806)
Q Consensus 455 ~~~L~~~~r~~Le~lL~~L--t~tr~sI~~~m~w~l~ha~~A~eIvd~i~~sl~~~~----t~~~kKLa~LYLinDILhN 528 (806)
.+.|.-.+ |..+|..+ +|+++.|..++.|+.++++ +...|++|+..|++.- .-+..+||+||||||+|||
T Consensus 98 ~~~l~~~~---~~~~l~~~~~~c~kd~is~~k~w~f~~~~-s~~~~e~~~~~l~n~~~~~~~~~~lrlh~~ylind~~~h 173 (757)
T KOG4368|consen 98 ETQLDMNE---FDNLLQPIIDTCTKDAISAGKNWMFSNAK-SPPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHH 173 (757)
T ss_pred hccCCHHH---HHHHHHHHHHHHhHHHHHHhhhhhhhcCC-CchHHHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHH
Confidence 33444444 44444433 6999999999999999999 5678888888877643 3478999999999999999
Q ss_pred cccCCCChhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhccccccCCHHHHHHHHHHHcCC
Q psy17497 529 CGIKISNASFYRRGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWAVYPKDYLIKLQNVFLGL 602 (806)
Q Consensus 529 s~~kv~na~~yr~~fe~~Lp~IF~~l~~~y~~~~gr~~ae~~k~kV~~VL~iWe~~~vfp~~~l~~L~~~f~g~ 602 (806)
|.++ .+.....+++.++..|||.- +.++ .|.-.+++.++|..||.+.+|...++.+|++..+|.
T Consensus 174 cqrk--~~~~~~~~l~~~v~~~yc~~---~~~~-----~e~~~~~~~~ll~~we~~~yf~ds~~~ql~~~~~~~ 237 (757)
T KOG4368|consen 174 CQRK--QARELLAALQKVVVPIYCTS---FLAV-----EEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGL 237 (757)
T ss_pred HHHH--HHHHHHHHHHHHhHHHHHhh---hhhh-----HhHHHHHHHHHHHHHhhcCchhHHHHHHhhhhhhhh
Confidence 9876 77788899999998888751 1112 256678899999999999999999999999998874
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.46 E-value=3.4e-13 Score=148.48 Aligned_cols=82 Identities=23% Similarity=0.463 Sum_probs=77.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
.+.+|||+|||+.+++++|.++|++||.|.+|+|+ .|..+|+++|||||.|.+.++|..||..|||..|+|+.|+|.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~---~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~ 344 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKII---RDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVS 344 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEe---EcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34579999999999999999999999999999999 688899999999999999999999999999999999999999
Q ss_pred eccCC
Q psy17497 274 WGKSV 278 (806)
Q Consensus 274 ~ak~~ 278 (806)
|....
T Consensus 345 ~~~~~ 349 (352)
T TIGR01661 345 FKTNK 349 (352)
T ss_pred EccCC
Confidence 98754
No 10
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.43 E-value=3.2e-13 Score=148.63 Aligned_cols=81 Identities=26% Similarity=0.506 Sum_probs=77.5
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEe
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGW 274 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~ 274 (806)
.++|||+|||+.+++++|+.+|+.||+|.+|+|+ .+..+|+++|||||+|.+.++|++|+..|||..|.|+.|+|.|
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~---~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~ 79 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLV---RDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSY 79 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEE---EcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEe
Confidence 6899999999999999999999999999999999 6888899999999999999999999999999999999999999
Q ss_pred ccCC
Q psy17497 275 GKSV 278 (806)
Q Consensus 275 ak~~ 278 (806)
+++.
T Consensus 80 a~~~ 83 (352)
T TIGR01661 80 ARPS 83 (352)
T ss_pred eccc
Confidence 9754
No 11
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.42 E-value=5.5e-13 Score=111.73 Aligned_cols=70 Identities=37% Similarity=0.772 Sum_probs=66.0
Q ss_pred EEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 198 LfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
|||+|||+.+++++|+.+|++||.|..+.++. + .+++.++||||+|.+.++|+.|+..|||..++|+.||
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~---~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMR---N-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEE---E-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccc---c-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999982 3 6688999999999999999999999999999999986
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.39 E-value=1.4e-12 Score=152.21 Aligned_cols=122 Identities=18% Similarity=0.349 Sum_probs=94.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccccCcCCCCCchhhhhccccCCCCCCCCCCCCEEEEcCCCCCCcHH
Q psy17497 131 IDIKKKSNLEMFKEELKMIQEEREERHKYKGVLKGVYSEEAEPPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQ 210 (806)
Q Consensus 131 ~~~~Kk~~id~f~EELK~~QeereeR~~~k~~~~~~~~sr~~~p~~~~~~~~~~~gs~d~~dp~~ttLfVgNLp~~vte~ 210 (806)
.++-|+..++.-+++...+|..+.+..+.....+ ...+ .......++|||||||+.++++
T Consensus 63 ~~~~~~~~~~~s~~~~~lkQ~~~~qqqq~~~q~~--~~~r------------------~~a~~~~~rLfVGnLp~~~tEe 122 (612)
T TIGR01645 63 IQKAKKYAMEQSIKQVLLKQTKAHQQQQLENQQR--QQQR------------------QQALAIMCRVYVGSISFELRED 122 (612)
T ss_pred HHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHHHH--HHHH------------------hhhhcCCCEEEEcCCCCCCCHH
Confidence 3355888888887777666554433322221110 0000 0012235899999999999999
Q ss_pred HHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEec
Q psy17497 211 QLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWG 275 (806)
Q Consensus 211 ~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~a 275 (806)
+|+.+|.+||.|.+|+|+ .|..+|+++|||||+|.+.++|.+|+..|||..|+|+.|+|.+.
T Consensus 123 ~Lr~lF~~fG~I~sV~I~---~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 123 TIRRAFDPFGPIKSINMS---WDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred HHHHHHHccCCEEEEEEe---ecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 999999999999999999 58889999999999999999999999999999999999999853
No 13
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.39 E-value=1.2e-12 Score=144.89 Aligned_cols=85 Identities=28% Similarity=0.506 Sum_probs=79.9
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCee
Q psy17497 190 SGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYE 269 (806)
Q Consensus 190 ~~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~ 269 (806)
......++|||+|||+.+|+++|+++|..||.|.+|+|+ .|..+++++|||||+|.+.++|.+|+..|||..|.+++
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~---~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~ 178 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIM---RDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKR 178 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---ecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCce
Confidence 345568999999999999999999999999999999999 68889999999999999999999999999999999999
Q ss_pred EEEEeccC
Q psy17497 270 MKLGWGKS 277 (806)
Q Consensus 270 LrV~~ak~ 277 (806)
|+|.|+++
T Consensus 179 i~V~~a~p 186 (346)
T TIGR01659 179 LKVSYARP 186 (346)
T ss_pred eeeecccc
Confidence 99999875
No 14
>KOG0122|consensus
Probab=99.38 E-value=1.4e-12 Score=133.91 Aligned_cols=83 Identities=27% Similarity=0.532 Sum_probs=79.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
...++|-|.||+.++++.+|.++|.+||.|.+|.|. +|..||.++|||||+|.++++|.+||..|||+-++.-.|+|
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvyla---rdK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrv 263 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLA---RDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRV 263 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEE---EccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEE
Confidence 357889999999999999999999999999999999 79999999999999999999999999999999999999999
Q ss_pred EeccCC
Q psy17497 273 GWGKSV 278 (806)
Q Consensus 273 ~~ak~~ 278 (806)
.|+++.
T Consensus 264 EwskP~ 269 (270)
T KOG0122|consen 264 EWSKPS 269 (270)
T ss_pred EecCCC
Confidence 999975
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.33 E-value=4.6e-12 Score=148.00 Aligned_cols=82 Identities=15% Similarity=0.353 Sum_probs=77.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
..++|||+||++.+++++|+.+|+.||.|.+|+|+ .+..+|+++|||||.|.+.++|..|+..|||+.|+|+.|+|+
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~---~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~ 279 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLA---RAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVG 279 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEE---ecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 45789999999999999999999999999999999 677889999999999999999999999999999999999999
Q ss_pred eccCC
Q psy17497 274 WGKSV 278 (806)
Q Consensus 274 ~ak~~ 278 (806)
++...
T Consensus 280 kAi~p 284 (612)
T TIGR01645 280 KCVTP 284 (612)
T ss_pred ecCCC
Confidence 98754
No 16
>PF04818 CTD_bind: RNA polymerase II-binding domain.; InterPro: IPR006903 This entry represents a conserved region found in a number of uncharacterised eukaryotic proteins.; PDB: 2L0I_A 2KM4_A 3D9I_B 3D9N_B 3D9O_A 3D9P_B 3D9K_A 3D9M_A 3D9J_A 3D9L_A ....
Probab=99.32 E-value=6.8e-13 Score=111.95 Aligned_cols=64 Identities=30% Similarity=0.576 Sum_probs=55.4
Q ss_pred hhhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhccccccCC
Q psy17497 515 KIGRLYLVSDILHNCGIKISNASFYRRGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWAVYP 588 (806)
Q Consensus 515 KLa~LYLinDILhNs~~kv~na~~yr~~fe~~Lp~IF~~l~~~y~~~~gr~~ae~~k~kV~~VL~iWe~~~vfp 588 (806)
||++|||+|||||||.++ +.+.|...|+++||.+|.++ |... .++.+++|.+||++|++|.||+
T Consensus 1 KL~~lYl~ndI~q~sk~k--~~~~f~~~F~~~l~~~~~~~---~~~~-----~~~~~~kv~rll~iW~~r~if~ 64 (64)
T PF04818_consen 1 KLALLYLANDILQNSKRK--NPDEFAPAFSPVLPDAFAHA---YKNV-----DPEVRKKVQRLLNIWEERNIFS 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHH--TTHCHHHHHHCCHHHHHHHH---CCCS------HHHHHHHHHHHHHHHHCTSS-
T ss_pred CcceeehHHHHHHHhhhc--ChHHHHHHHHHHHHHHHHHH---HhcC-----CHHHHHHHHHHHHHhhCCCCCC
Confidence 799999999999999765 77899999999999998884 4333 4788999999999999999996
No 17
>KOG0121|consensus
Probab=99.31 E-value=3.3e-12 Score=119.78 Aligned_cols=81 Identities=28% Similarity=0.541 Sum_probs=75.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
..++|||||||+..++|+.|.++|+++|.|..|-+- .|..+....||+||+|.++++|+.|+..++|..|+.++|+|
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMG---Ldr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~ 110 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMG---LDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRI 110 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEec---cccCCcCccceEEEEEecchhHHHHHHHhccCcccccceee
Confidence 347999999999999999999999999999998665 57778889999999999999999999999999999999999
Q ss_pred Eecc
Q psy17497 273 GWGK 276 (806)
Q Consensus 273 ~~ak 276 (806)
+|.-
T Consensus 111 D~D~ 114 (153)
T KOG0121|consen 111 DWDA 114 (153)
T ss_pred eccc
Confidence 9964
No 18
>KOG0148|consensus
Probab=99.28 E-value=1.2e-11 Score=128.56 Aligned_cols=84 Identities=21% Similarity=0.544 Sum_probs=78.0
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCe
Q psy17497 189 DSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSY 268 (806)
Q Consensus 189 d~~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr 268 (806)
....+.+|+|||||++..++++.|+..|++||+|.+|+|. +-+||+||.|.+.+.|..||..|||..|+|+
T Consensus 158 NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvF---------k~qGYaFVrF~tkEaAahAIv~mNntei~G~ 228 (321)
T KOG0148|consen 158 NQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVF---------KDQGYAFVRFETKEAAAHAIVQMNNTEIGGQ 228 (321)
T ss_pred ccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEe---------cccceEEEEecchhhHHHHHHHhcCceeCce
Confidence 4467889999999999999999999999999999999998 5579999999999999999999999999999
Q ss_pred eEEEEeccCCCCC
Q psy17497 269 EMKLGWGKSVPIP 281 (806)
Q Consensus 269 ~LrV~~ak~~~~p 281 (806)
.+|+.|+|.....
T Consensus 229 ~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 229 LVRCSWGKEGDDG 241 (321)
T ss_pred EEEEeccccCCCC
Confidence 9999999987543
No 19
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.28 E-value=2e-11 Score=135.23 Aligned_cols=85 Identities=29% Similarity=0.457 Sum_probs=78.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCC--eeEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQS--YEMK 271 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~G--r~Lr 271 (806)
..++|||+|||..+|+++|+++|++||.|..|+|+ .+..++++++||||+|.+.++|++||+.||+..+.| ++|+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~---~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~ 268 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNIL---RDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLT 268 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEe---ecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEE
Confidence 46789999999999999999999999999999999 678889999999999999999999999999999876 7999
Q ss_pred EEeccCCCCC
Q psy17497 272 LGWGKSVPIP 281 (806)
Q Consensus 272 V~~ak~~~~p 281 (806)
|.|++.....
T Consensus 269 V~~a~~~~~~ 278 (346)
T TIGR01659 269 VRLAEEHGKA 278 (346)
T ss_pred EEECCccccc
Confidence 9999876543
No 20
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.24 E-value=8.3e-11 Score=138.18 Aligned_cols=82 Identities=30% Similarity=0.541 Sum_probs=76.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
...++|||+||+..+++++|+++|++||.|.+|+|+ .+ .+|+++|||||+|.+.++|.+|+..|||..++|++|+|
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~---~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V 358 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVM---LD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYV 358 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEE---EC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEE
Confidence 456889999999999999999999999999999999 45 67899999999999999999999999999999999999
Q ss_pred EeccCC
Q psy17497 273 GWGKSV 278 (806)
Q Consensus 273 ~~ak~~ 278 (806)
.||...
T Consensus 359 ~~a~~k 364 (562)
T TIGR01628 359 ALAQRK 364 (562)
T ss_pred EeccCc
Confidence 999753
No 21
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.23 E-value=5e-11 Score=125.65 Aligned_cols=79 Identities=19% Similarity=0.351 Sum_probs=70.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEe
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGW 274 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~ 274 (806)
.++|||||||+.+++++|+++|+.||.|.+|.|+ .+. ..+|||||+|.+.++|+.|+. |||..|.|+.|+|.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~---~d~---~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~ 76 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQ---SEN---ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITP 76 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEe---ecC---CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEe
Confidence 5789999999999999999999999999999998 343 246899999999999999995 999999999999999
Q ss_pred ccCCCC
Q psy17497 275 GKSVPI 280 (806)
Q Consensus 275 ak~~~~ 280 (806)
+.....
T Consensus 77 a~~~~~ 82 (260)
T PLN03120 77 AEDYQL 82 (260)
T ss_pred ccCCCC
Confidence 775543
No 22
>KOG0107|consensus
Probab=99.23 E-value=1.9e-11 Score=120.33 Aligned_cols=78 Identities=32% Similarity=0.644 Sum_probs=71.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
..|.||||||+..+++.+|..+|..||+|.+|-|- ....|||||+|++..||+.|+..|||..|+|..|+|.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvA--------rnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE 80 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVA--------RNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVE 80 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEe--------ecCCCceEEeccCcccHHHHHhhcCCccccCceEEEE
Confidence 36899999999999999999999999999999876 2567999999999999999999999999999999999
Q ss_pred eccCCC
Q psy17497 274 WGKSVP 279 (806)
Q Consensus 274 ~ak~~~ 279 (806)
+..-.+
T Consensus 81 ~S~G~~ 86 (195)
T KOG0107|consen 81 LSTGRP 86 (195)
T ss_pred eecCCc
Confidence 886544
No 23
>KOG4207|consensus
Probab=99.23 E-value=2.1e-11 Score=122.50 Aligned_cols=84 Identities=24% Similarity=0.422 Sum_probs=79.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
..++|-|-||.+.++.++|+.+|.+||.|..|.|. .|..|+.++|||||-|....+|+.|+.+|+|.+|+|+.|+|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIP---rdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIP---RDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecc---cccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 46889999999999999999999999999999998 588899999999999999999999999999999999999999
Q ss_pred eccCCCC
Q psy17497 274 WGKSVPI 280 (806)
Q Consensus 274 ~ak~~~~ 280 (806)
+|+....
T Consensus 89 ~arygr~ 95 (256)
T KOG4207|consen 89 MARYGRP 95 (256)
T ss_pred hhhcCCC
Confidence 9987654
No 24
>PLN03213 repressor of silencing 3; Provisional
Probab=99.23 E-value=2.3e-11 Score=134.26 Aligned_cols=78 Identities=18% Similarity=0.336 Sum_probs=71.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecCh--HHHHHHHHHhCCceeCCeeEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNR--KDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~--~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
...+||||||++.+++++|..+|+.||.|.+|.|+ +.+| ||||||+|.+. .++.+||..|||..|+|+.|+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp-----RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV-----RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe-----cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 35789999999999999999999999999999998 3456 99999999987 689999999999999999999
Q ss_pred EEeccCC
Q psy17497 272 LGWGKSV 278 (806)
Q Consensus 272 V~~ak~~ 278 (806)
|.-|++.
T Consensus 82 VNKAKP~ 88 (759)
T PLN03213 82 LEKAKEH 88 (759)
T ss_pred EeeccHH
Confidence 9988754
No 25
>KOG0111|consensus
Probab=99.22 E-value=7.6e-12 Score=126.46 Aligned_cols=86 Identities=27% Similarity=0.451 Sum_probs=81.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
..++||||+|...|++..|...|-.||.|..|+|. .|-+++++||||||+|..++||..||..||+.+|.||.|+|.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiP---lDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIP---LDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccc---cchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 35789999999999999999999999999999998 788999999999999999999999999999999999999999
Q ss_pred eccCCCCCC
Q psy17497 274 WGKSVPIPS 282 (806)
Q Consensus 274 ~ak~~~~p~ 282 (806)
+|+|..+..
T Consensus 86 ~AkP~kike 94 (298)
T KOG0111|consen 86 LAKPEKIKE 94 (298)
T ss_pred ecCCccccC
Confidence 999987653
No 26
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.22 E-value=4.7e-11 Score=101.12 Aligned_cols=70 Identities=33% Similarity=0.782 Sum_probs=63.3
Q ss_pred EEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 198 LfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
|||+|||+.+++++|+.+|+.||.|..|++. .+.. |..+++|||+|.+.++|.+|+..++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~---~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLI---KNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEE---ESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEE---eeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999998 4444 78899999999999999999999999999999875
No 27
>KOG0113|consensus
Probab=99.21 E-value=5.2e-11 Score=125.33 Aligned_cols=86 Identities=22% Similarity=0.504 Sum_probs=80.6
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
+|| .+||||+.|++.++|..|+..|..||+|..|+|+ .+..||+++|||||+|+...+...|.+..+|..|+|+.|
T Consensus 98 gDP-y~TLFv~RLnydT~EskLrreF~~YG~IkrirlV---~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 98 GDP-YKTLFVARLNYDTSESKLRREFEKYGPIKRIRLV---RDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred CCc-cceeeeeeccccccHHHHHHHHHhcCcceeEEEe---eecccCCccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 444 7999999999999999999999999999999999 799999999999999999999999999999999999999
Q ss_pred EEEeccCCCC
Q psy17497 271 KLGWGKSVPI 280 (806)
Q Consensus 271 rV~~ak~~~~ 280 (806)
-|++-+...+
T Consensus 174 ~VDvERgRTv 183 (335)
T KOG0113|consen 174 LVDVERGRTV 183 (335)
T ss_pred EEEecccccc
Confidence 9999876543
No 28
>KOG0149|consensus
Probab=99.21 E-value=6.1e-11 Score=121.62 Aligned_cols=84 Identities=20% Similarity=0.389 Sum_probs=75.8
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCee
Q psy17497 190 SGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYE 269 (806)
Q Consensus 190 ~~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~ 269 (806)
..|...|+||||+|++.+..+.|+++|.+||.|.+..|+ +|+.+|+++|||||+|.+.+.|.+|+... +-.|+||+
T Consensus 7 ~~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvi---td~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~ 82 (247)
T KOG0149|consen 7 FGDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVI---TDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRK 82 (247)
T ss_pred CCCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEE---eccCCccccceeeEEeecHHHHHHHhcCC-CCcccccc
Confidence 356778999999999999999999999999999999999 89999999999999999999999999754 35689999
Q ss_pred EEEEeccC
Q psy17497 270 MKLGWGKS 277 (806)
Q Consensus 270 LrV~~ak~ 277 (806)
-.+..|.-
T Consensus 83 aNcnlA~l 90 (247)
T KOG0149|consen 83 ANCNLASL 90 (247)
T ss_pred cccchhhh
Confidence 88887643
No 29
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.20 E-value=4.5e-11 Score=136.56 Aligned_cols=82 Identities=32% Similarity=0.660 Sum_probs=77.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
+..++|||+|||+.+++++|..+|++||.|..|.|+ .+..+|+++|||||+|.+.++|..|+..|||..|.|+.|+|
T Consensus 184 p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~---~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v 260 (457)
T TIGR01622 184 PNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLH---RDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKV 260 (457)
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEE---EcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEE
Confidence 447899999999999999999999999999999998 67788899999999999999999999999999999999999
Q ss_pred EeccC
Q psy17497 273 GWGKS 277 (806)
Q Consensus 273 ~~ak~ 277 (806)
.|+..
T Consensus 261 ~~a~~ 265 (457)
T TIGR01622 261 GYAQD 265 (457)
T ss_pred EEccC
Confidence 99983
No 30
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.20 E-value=4.3e-11 Score=140.58 Aligned_cols=79 Identities=33% Similarity=0.692 Sum_probs=75.3
Q ss_pred CEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEec
Q psy17497 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWG 275 (806)
Q Consensus 196 ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~a 275 (806)
.+|||||||+++|+++|+++|++||.|.+|+|+ +|..+++++|||||+|.+.++|++|+..||+..|.|+.|+|.|+
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~---~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s 77 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVC---RDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWS 77 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---ecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecc
Confidence 379999999999999999999999999999999 78888999999999999999999999999999999999999997
Q ss_pred cC
Q psy17497 276 KS 277 (806)
Q Consensus 276 k~ 277 (806)
..
T Consensus 78 ~~ 79 (562)
T TIGR01628 78 QR 79 (562)
T ss_pred cc
Confidence 64
No 31
>KOG0125|consensus
Probab=99.17 E-value=9.9e-11 Score=124.55 Aligned_cols=81 Identities=21% Similarity=0.427 Sum_probs=73.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
..++|||+|||....+.||+.+|++||.|.+|.|++ ++ ..++|||||+|++..||++|-..|+|..|.||+|.|.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIf---NE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIF---NE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEe---cc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 357899999999999999999999999999999994 22 3579999999999999999999999999999999999
Q ss_pred eccCCC
Q psy17497 274 WGKSVP 279 (806)
Q Consensus 274 ~ak~~~ 279 (806)
.|.+.-
T Consensus 170 ~ATarV 175 (376)
T KOG0125|consen 170 NATARV 175 (376)
T ss_pred ccchhh
Confidence 987653
No 32
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.15 E-value=1.3e-10 Score=134.38 Aligned_cols=83 Identities=20% Similarity=0.390 Sum_probs=77.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
..++|||||||..+++++|..+|..||.|..+.|+ .+..+|.++|||||+|.+..+|..|+..|||..|+|+.|+|.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~---~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~ 370 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLI---KDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQ 370 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE---ecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 35789999999999999999999999999999998 677889999999999999999999999999999999999999
Q ss_pred eccCCC
Q psy17497 274 WGKSVP 279 (806)
Q Consensus 274 ~ak~~~ 279 (806)
|+....
T Consensus 371 ~a~~~~ 376 (509)
T TIGR01642 371 RACVGA 376 (509)
T ss_pred ECccCC
Confidence 997543
No 33
>KOG0148|consensus
Probab=99.15 E-value=5.3e-11 Score=123.81 Aligned_cols=82 Identities=27% Similarity=0.649 Sum_probs=77.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEe
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGW 274 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~ 274 (806)
.-.+|||.|.+.++.+.|++.|.+||.|..++|+ +|..|++++|||||.|.++.+|++||..|||.-|++|.||..|
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvi---rD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNW 138 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVI---RDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNW 138 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEe---ecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccc
Confidence 4469999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q psy17497 275 GKSVP 279 (806)
Q Consensus 275 ak~~~ 279 (806)
|.-.+
T Consensus 139 ATRKp 143 (321)
T KOG0148|consen 139 ATRKP 143 (321)
T ss_pred cccCc
Confidence 96544
No 34
>KOG0124|consensus
Probab=99.14 E-value=5.8e-11 Score=127.17 Aligned_cols=76 Identities=24% Similarity=0.568 Sum_probs=73.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
.|++|||.+.+.+.|+.|+..|..||+|++|.+.| |..|++++|||||+|+-.+.|..|++.|||..++||.|+|+
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSW---Dp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSW---DPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeeccc---ccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 58899999999999999999999999999999998 88899999999999999999999999999999999999997
No 35
>smart00362 RRM_2 RNA recognition motif.
Probab=99.13 E-value=2.8e-10 Score=93.78 Aligned_cols=72 Identities=35% Similarity=0.730 Sum_probs=66.0
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 197 tLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
+|||+|||..++.++|..+|.+||.|..+.++. +. +.++++|||+|.+..+|..|+..|+|..+.|+.|+|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~---~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPK---DT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEec---CC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 589999999999999999999999999999883 33 6778999999999999999999999999999998873
No 36
>KOG0126|consensus
Probab=99.13 E-value=1.1e-11 Score=122.41 Aligned_cols=85 Identities=18% Similarity=0.441 Sum_probs=78.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
..+.-|||||||+..||.+|..+|++||.|..|.++ +|..||+++||||++|++..+.-.|+..|||..|.||.|+|
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLi---RDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirV 109 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLI---RDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRV 109 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEE---ecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEe
Confidence 346789999999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred EeccCCCC
Q psy17497 273 GWGKSVPI 280 (806)
Q Consensus 273 ~~ak~~~~ 280 (806)
+.-.....
T Consensus 110 DHv~~Yk~ 117 (219)
T KOG0126|consen 110 DHVSNYKK 117 (219)
T ss_pred eecccccC
Confidence 97554433
No 37
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.13 E-value=1.9e-10 Score=117.93 Aligned_cols=80 Identities=29% Similarity=0.651 Sum_probs=76.5
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEe
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGW 274 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~ 274 (806)
.++|||||||..+++++|..+|..||.|..|.|+ .+..+|..+|||||+|.+.++|..|+..|+|..|.|+.|+|.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~---~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLV---RDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEee---eccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeec
Confidence 6899999999999999999999999999999998 5768899999999999999999999999999999999999999
Q ss_pred ccC
Q psy17497 275 GKS 277 (806)
Q Consensus 275 ak~ 277 (806)
+..
T Consensus 192 ~~~ 194 (306)
T COG0724 192 AQP 194 (306)
T ss_pred ccc
Confidence 875
No 38
>KOG0145|consensus
Probab=99.12 E-value=1.6e-10 Score=119.43 Aligned_cols=86 Identities=29% Similarity=0.533 Sum_probs=81.5
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
.+...|+|.|.-||.++|+++|+.+|+..|.|.+|+++ +|+-+|.+-|||||.|.+..||++|++.|||..|..+.|
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLv---RDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTI 113 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLV---RDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTI 113 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeee---eccccccccccceeeecChHHHHHHHhhhcceeeccceE
Confidence 34557899999999999999999999999999999999 799999999999999999999999999999999999999
Q ss_pred EEEeccCCC
Q psy17497 271 KLGWGKSVP 279 (806)
Q Consensus 271 rV~~ak~~~ 279 (806)
+|.||++..
T Consensus 114 KVSyARPSs 122 (360)
T KOG0145|consen 114 KVSYARPSS 122 (360)
T ss_pred EEEeccCCh
Confidence 999999764
No 39
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.10 E-value=4.1e-10 Score=131.52 Aligned_cols=76 Identities=30% Similarity=0.521 Sum_probs=70.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccC--CCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRY--GPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~f--G~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
..++|||+||+..+++++|+++|++| |.|.+|+++ ++||||+|.++++|++|+..|||..|+|+.|+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-----------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~ 300 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-----------RDYAFVHFEDREDAVKAMDELNGKELEGSEIE 300 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-----------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEE
Confidence 35789999999999999999999999 999999887 46999999999999999999999999999999
Q ss_pred EEeccCCCC
Q psy17497 272 LGWGKSVPI 280 (806)
Q Consensus 272 V~~ak~~~~ 280 (806)
|.|+++...
T Consensus 301 V~~Akp~~~ 309 (578)
T TIGR01648 301 VTLAKPVDK 309 (578)
T ss_pred EEEccCCCc
Confidence 999987643
No 40
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.09 E-value=2.5e-10 Score=133.28 Aligned_cols=78 Identities=21% Similarity=0.488 Sum_probs=71.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeC-CeeEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQ-SYEMKL 272 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~-Gr~LrV 272 (806)
..|+|||+|||+.+++++|..+|++||.|.+|+|+ .| .+|+++|||||+|.+.++|++||+.|||..|. |+.|.|
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~---~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V 132 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLM---MD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGV 132 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEE---EC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccc
Confidence 46899999999999999999999999999999999 56 78999999999999999999999999999985 787777
Q ss_pred Eec
Q psy17497 273 GWG 275 (806)
Q Consensus 273 ~~a 275 (806)
.++
T Consensus 133 ~~S 135 (578)
T TIGR01648 133 CIS 135 (578)
T ss_pred ccc
Confidence 654
No 41
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.08 E-value=9.8e-10 Score=114.39 Aligned_cols=76 Identities=21% Similarity=0.347 Sum_probs=67.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
+...+|||+||++.+|+++|+++|+.||.|.+|+|+ ++ +..++||||+|.+..+|+.|+ .|||..|.++.|.|
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~---~D---~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~I 75 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEII---RS---GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCI 75 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEe---cC---CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEE
Confidence 346789999999999999999999999999999998 34 345589999999999999999 59999999999988
Q ss_pred Eec
Q psy17497 273 GWG 275 (806)
Q Consensus 273 ~~a 275 (806)
.-.
T Consensus 76 t~~ 78 (243)
T PLN03121 76 TRW 78 (243)
T ss_pred EeC
Confidence 743
No 42
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.06 E-value=4.8e-10 Score=128.18 Aligned_cols=82 Identities=18% Similarity=0.357 Sum_probs=75.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
....++|||+|||..+++++|+.+|++||.|..|+|+ .+..+|+++|||||+|.+.++|.+||. |+|..+.|++|.
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~---~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~ 161 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCI---KDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPII 161 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe---ecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeE
Confidence 3447899999999999999999999999999999999 678889999999999999999999996 999999999999
Q ss_pred EEeccC
Q psy17497 272 LGWGKS 277 (806)
Q Consensus 272 V~~ak~ 277 (806)
|.++..
T Consensus 162 v~~~~~ 167 (457)
T TIGR01622 162 VQSSQA 167 (457)
T ss_pred Eeecch
Confidence 987654
No 43
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.06 E-value=5.9e-10 Score=128.92 Aligned_cols=81 Identities=19% Similarity=0.318 Sum_probs=73.7
Q ss_pred CCCCCEEEEcCCCC-CCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 192 DPCTTNLYLGNLNP-KITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 192 dp~~ttLfVgNLp~-~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
.+.+++|||+||++ .+|+++|+.+|+.||.|.+|+|+. + .+|||||+|.+.++|..|+..|||..|.|+.|
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~---~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l 343 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMK---N-----KKETALIEMADPYQAQLALTHLNGVKLFGKPL 343 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEe---C-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceE
Confidence 45678999999998 699999999999999999999993 2 36999999999999999999999999999999
Q ss_pred EEEeccCCCC
Q psy17497 271 KLGWGKSVPI 280 (806)
Q Consensus 271 rV~~ak~~~~ 280 (806)
+|.+++...+
T Consensus 344 ~v~~s~~~~~ 353 (481)
T TIGR01649 344 RVCPSKQQNV 353 (481)
T ss_pred EEEEcccccc
Confidence 9999987654
No 44
>smart00360 RRM RNA recognition motif.
Probab=99.06 E-value=6.1e-10 Score=91.32 Aligned_cols=71 Identities=34% Similarity=0.745 Sum_probs=64.9
Q ss_pred EcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 200 LGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 200 VgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
|+|||..+++++|+.+|.+||.|..+.|. .+..++.++|+|||.|.+.++|..|+..|+|..+.|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~---~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLV---RDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEE---eCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999998 344467889999999999999999999999999999998873
No 45
>KOG0108|consensus
Probab=99.03 E-value=5.5e-10 Score=126.21 Aligned_cols=82 Identities=26% Similarity=0.582 Sum_probs=78.7
Q ss_pred CEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEec
Q psy17497 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWG 275 (806)
Q Consensus 196 ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~a 275 (806)
+.+||||+|+.++++.|..+|+..|.|.+++++ .|.++|+.+||||++|.+.++|..|++.|||..+.|++|+|.|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v---~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLV---YDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeec---ccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecc
Confidence 889999999999999999999999999999999 78999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy17497 276 KSVPI 280 (806)
Q Consensus 276 k~~~~ 280 (806)
.....
T Consensus 96 ~~~~~ 100 (435)
T KOG0108|consen 96 SNRKN 100 (435)
T ss_pred cccch
Confidence 76653
No 46
>KOG0114|consensus
Probab=99.02 E-value=9.5e-10 Score=100.01 Aligned_cols=76 Identities=28% Similarity=0.491 Sum_probs=69.3
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEe
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGW 274 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~ 274 (806)
++-|||.|||..+|.++..++|++||+|..|+|- .+...+|.|||.|++..+|.+|+..|+|+.++++.|.|.|
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG------~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIG------NTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEec------CccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 6789999999999999999999999999999996 2335689999999999999999999999999999999987
Q ss_pred cc
Q psy17497 275 GK 276 (806)
Q Consensus 275 ak 276 (806)
-.
T Consensus 92 yq 93 (124)
T KOG0114|consen 92 YQ 93 (124)
T ss_pred cC
Confidence 43
No 47
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.00 E-value=2.3e-09 Score=88.82 Aligned_cols=74 Identities=34% Similarity=0.759 Sum_probs=66.8
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEe
Q psy17497 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGW 274 (806)
Q Consensus 197 tLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~ 274 (806)
+|||+|||+.+++++|..+|..||.|..+.+.+ +..+ ..+++|||.|.+.++|..|+..+++..+.|+.|.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~---~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVR---DKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEee---CCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999983 2222 6689999999999999999999999999999999875
No 48
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.99 E-value=1.4e-09 Score=125.85 Aligned_cols=76 Identities=14% Similarity=0.324 Sum_probs=69.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHh--CCceeCCeeEEE
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYL--NGKDVQSYEMKL 272 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~L--nG~~l~Gr~LrV 272 (806)
+++|||+|||+.+++++|+++|++||.|.+|+|+ +.++||||+|.+.++|.+|+..| ++..|+|+.|+|
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~---------~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v 72 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMML---------PGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFF 72 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEE---------CCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEE
Confidence 6789999999999999999999999999999998 34689999999999999999874 788999999999
Q ss_pred EeccCCC
Q psy17497 273 GWGKSVP 279 (806)
Q Consensus 273 ~~ak~~~ 279 (806)
.|+....
T Consensus 73 ~~s~~~~ 79 (481)
T TIGR01649 73 NYSTSQE 79 (481)
T ss_pred EecCCcc
Confidence 9997544
No 49
>KOG0131|consensus
Probab=98.98 E-value=5.4e-10 Score=110.76 Aligned_cols=79 Identities=28% Similarity=0.519 Sum_probs=75.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEe
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGW 274 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~ 274 (806)
..|||||||+..++++.|.++|-+.|+|..++|. .|..+...+|||||+|.++++|+-|++.||...|.|++|+|.-
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iP---kDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIP---KDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecc---hhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 5789999999999999999999999999999997 7888899999999999999999999999999999999999987
Q ss_pred cc
Q psy17497 275 GK 276 (806)
Q Consensus 275 ak 276 (806)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 65
No 50
>KOG0105|consensus
Probab=98.98 E-value=7.9e-10 Score=109.60 Aligned_cols=81 Identities=22% Similarity=0.423 Sum_probs=72.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
...++|||||||..+.+.+|..+|-+||.|..|.+--|+ ....||||+|++..+|+.||..-+|+.++|+.|+|
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~------g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRV 77 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP------GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRV 77 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC------CCCCeeEEEecCccchhhhhhcccccccCcceEEE
Confidence 356899999999999999999999999999999876322 45689999999999999999999999999999999
Q ss_pred EeccCCC
Q psy17497 273 GWGKSVP 279 (806)
Q Consensus 273 ~~ak~~~ 279 (806)
.|+....
T Consensus 78 Efprggr 84 (241)
T KOG0105|consen 78 EFPRGGR 84 (241)
T ss_pred EeccCCC
Confidence 9987654
No 51
>KOG0117|consensus
Probab=98.98 E-value=1.6e-09 Score=119.28 Aligned_cols=81 Identities=20% Similarity=0.448 Sum_probs=76.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeC-CeeEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQ-SYEMK 271 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~-Gr~Lr 271 (806)
+..|-||||.||.++.|++|.-+|.+.|.|..++|| +|+.+|.+||||||+|.+.++|+.|++.||+.+|. |+.|.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLM---mD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ig 157 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLM---MDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLG 157 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEe---ecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeE
Confidence 568999999999999999999999999999999999 79899999999999999999999999999999986 89998
Q ss_pred EEecc
Q psy17497 272 LGWGK 276 (806)
Q Consensus 272 V~~ak 276 (806)
|..+-
T Consensus 158 vc~Sv 162 (506)
T KOG0117|consen 158 VCVSV 162 (506)
T ss_pred EEEee
Confidence 88654
No 52
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=98.98 E-value=4.4e-09 Score=101.98 Aligned_cols=132 Identities=17% Similarity=0.324 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhhcCcchHhHHHHHHHHhhcccchHHHHHHHHHHhhcccccchhhhhhhhhhhhhhhhcccCCCChhhHH
Q psy17497 461 SQRHRLEDFLRNLTPERVKVAEAMVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASFYR 540 (806)
Q Consensus 461 ~~r~~Le~lL~~Lt~tr~sI~~~m~w~l~ha~~A~eIvd~i~~sl~~~~t~~~kKLa~LYLinDILhNs~~kv~na~~yr 540 (806)
+.|-+|..+|++||.++.||+.|..|+|.|.+.++++.+||.+.|... .+..|+.++|+|--++.-|.........|.
T Consensus 5 E~r~~F~~~L~~L~aS~qSi~kaa~fAlk~~~~~edL~~cIle~le~~--~lN~R~nI~~fID~l~e~~~~~~~~~~~Yv 82 (139)
T PF12243_consen 5 EVRMQFTQLLRRLNASQQSIQKAAQFALKNRDMEEDLWSCILEQLEKE--NLNTRINIFYFIDSLCESSQKSKKYNYPYV 82 (139)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHHccccHHHHHHHHHHHHhcc--chhhHHHHHHHHHHHHHHHHhcccccchhH
Confidence 457899999999999999999999999999999999999999999775 679999999999774444443322356799
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhccccccCCHHHHHHHHHHHc
Q psy17497 541 RGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWAVYPKDYLIKLQNVFL 600 (806)
Q Consensus 541 ~~fe~~Lp~IF~~l~~~y~~~~gr~~ae~~k~kV~~VL~iWe~~~vfp~~~l~~L~~~f~ 600 (806)
..++..||.|..... .+++..+ ...+.+.+||+.|..+.+++...+..+...+.
T Consensus 83 ~~l~~dL~~Iv~~V~-----P~~~~g~-~N~~~~~kvL~~~~~k~~l~~~~~~~~~~~l~ 136 (139)
T PF12243_consen 83 SMLQRDLPRIVDAVA-----PPDNSGA-ANLKSVRKVLKNWSKKKILDPEEYEEIEASLK 136 (139)
T ss_pred HHHHHHHHHHHHHhC-----CCCCccc-hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 999999999954322 1233322 56789999999999999999999988876654
No 53
>KOG0145|consensus
Probab=98.94 E-value=4.2e-09 Score=109.09 Aligned_cols=80 Identities=23% Similarity=0.472 Sum_probs=75.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEe
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGW 274 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~ 274 (806)
.-.|||-||.+..+|.-|..+|++||.|..|+|+ +|-.|.+.+|||||++.+.++|..||..|||+.++++.|.|.|
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvi---rD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsF 354 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVI---RDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 354 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEE---ecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEE
Confidence 4569999999999999999999999999999999 7888999999999999999999999999999999999999998
Q ss_pred ccC
Q psy17497 275 GKS 277 (806)
Q Consensus 275 ak~ 277 (806)
-..
T Consensus 355 Ktn 357 (360)
T KOG0145|consen 355 KTN 357 (360)
T ss_pred ecC
Confidence 643
No 54
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.92 E-value=5e-09 Score=85.50 Aligned_cols=56 Identities=29% Similarity=0.638 Sum_probs=50.4
Q ss_pred HHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEec
Q psy17497 212 LMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWG 275 (806)
Q Consensus 212 L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~a 275 (806)
|..+|++||.|..+.+.. ..+++|||+|.+.++|..|+..|||..++|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~--------~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFK--------KKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEET--------TSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEe--------CCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 678999999999999982 11599999999999999999999999999999999996
No 55
>KOG0130|consensus
Probab=98.91 E-value=2e-09 Score=102.07 Aligned_cols=84 Identities=17% Similarity=0.334 Sum_probs=78.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
..-.|||.++-...+++++...|+.||+|+.+.+. .|..||..+|||.|+|.+.++|+.|+..|||..|.|..|.|+
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLN---LDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLN---LDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeec---cccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 45679999999999999999999999999999998 788999999999999999999999999999999999999999
Q ss_pred eccCCCC
Q psy17497 274 WGKSVPI 280 (806)
Q Consensus 274 ~ak~~~~ 280 (806)
|+...+.
T Consensus 148 w~Fv~gp 154 (170)
T KOG0130|consen 148 WCFVKGP 154 (170)
T ss_pred EEEecCC
Confidence 9986543
No 56
>KOG0144|consensus
Probab=98.89 E-value=2.5e-09 Score=117.26 Aligned_cols=87 Identities=22% Similarity=0.555 Sum_probs=77.3
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCce-eCC
Q psy17497 189 DSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKD-VQS 267 (806)
Q Consensus 189 d~~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~-l~G 267 (806)
+..|...-+||||.+|..++|.+|+.+|.+||.|.+|.|+ +|+.|+.++|||||.|.++++|.+|+.+|++.. |-|
T Consensus 28 d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~---kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG 104 (510)
T KOG0144|consen 28 DNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLI---KDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPG 104 (510)
T ss_pred CCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEee---cccccCcccceEEEEeccHHHHHHHHHHhhcccccCC
Confidence 3455667789999999999999999999999999999999 899999999999999999999999999999876 444
Q ss_pred --eeEEEEeccCC
Q psy17497 268 --YEMKLGWGKSV 278 (806)
Q Consensus 268 --r~LrV~~ak~~ 278 (806)
.+|.|.||..-
T Consensus 105 ~~~pvqvk~Ad~E 117 (510)
T KOG0144|consen 105 MHHPVQVKYADGE 117 (510)
T ss_pred CCcceeecccchh
Confidence 77888887543
No 57
>KOG0117|consensus
Probab=98.89 E-value=2.8e-09 Score=117.40 Aligned_cols=74 Identities=31% Similarity=0.538 Sum_probs=70.3
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEe
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGW 274 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~ 274 (806)
-..|||.||+.++|++.|.++|.+||.|..|+.+ +-||||.|.++++|.+||+.|||+.|+|..|.|.+
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-----------rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtL 327 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP-----------RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTL 327 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecc-----------cceeEEeecchHHHHHHHHHhcCceecCceEEEEe
Confidence 4679999999999999999999999999999887 56999999999999999999999999999999999
Q ss_pred ccCCC
Q psy17497 275 GKSVP 279 (806)
Q Consensus 275 ak~~~ 279 (806)
||++.
T Consensus 328 AKP~~ 332 (506)
T KOG0117|consen 328 AKPVD 332 (506)
T ss_pred cCChh
Confidence 99875
No 58
>KOG0144|consensus
Probab=98.87 E-value=1.8e-09 Score=118.43 Aligned_cols=83 Identities=27% Similarity=0.506 Sum_probs=73.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCce-eCC--ee
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKD-VQS--YE 269 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~-l~G--r~ 269 (806)
+...+||||-|+..+||.+++++|++||.|.+|.|+ +|. -|.+||||||+|.+++-|..||+.|||.. +.| .+
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~il---rd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~P 197 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYIL---RDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQP 197 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhhe---ecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCc
Confidence 346789999999999999999999999999999999 444 47899999999999999999999999986 555 78
Q ss_pred EEEEeccCCC
Q psy17497 270 MKLGWGKSVP 279 (806)
Q Consensus 270 LrV~~ak~~~ 279 (806)
|.|.||.+..
T Consensus 198 LVVkFADtqk 207 (510)
T KOG0144|consen 198 LVVKFADTQK 207 (510)
T ss_pred eEEEecccCC
Confidence 9999997653
No 59
>KOG0131|consensus
Probab=98.87 E-value=2.3e-09 Score=106.43 Aligned_cols=86 Identities=24% Similarity=0.498 Sum_probs=78.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEE-EEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASI-KIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sV-kI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
.+.+||||||.+.+++..|..+|+.||.+.+. +|| ++..||.++|||||.|.+.+.+.+|+..|||+.++++++.|
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~---rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv 171 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIM---RDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITV 171 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCccc---ccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEE
Confidence 35899999999999999999999999998765 788 78899999999999999999999999999999999999999
Q ss_pred EeccCCCCCC
Q psy17497 273 GWGKSVPIPS 282 (806)
Q Consensus 273 ~~ak~~~~p~ 282 (806)
.|++......
T Consensus 172 ~ya~k~~~kg 181 (203)
T KOG0131|consen 172 SYAFKKDTKG 181 (203)
T ss_pred EEEEecCCCc
Confidence 9997665433
No 60
>KOG0153|consensus
Probab=98.86 E-value=4.7e-09 Score=112.78 Aligned_cols=79 Identities=32% Similarity=0.701 Sum_probs=70.4
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHH-hCCceeCCe
Q psy17497 190 SGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKY-LNGKDVQSY 268 (806)
Q Consensus 190 ~~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~-LnG~~l~Gr 268 (806)
..|...++||||+|...+++.+|+.+|.+||.|.++.++ ..++||||+|.++..|+.|... +|...|+|+
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~---------~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRIL---------PRKGCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEee---------cccccceeeehhhHHHHHHHHhhcceeeecce
Confidence 356678999999999999999999999999999999998 3467999999999999998864 555568999
Q ss_pred eEEEEeccC
Q psy17497 269 EMKLGWGKS 277 (806)
Q Consensus 269 ~LrV~~ak~ 277 (806)
+|+|.||++
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 999999998
No 61
>KOG0415|consensus
Probab=98.84 E-value=7.6e-09 Score=111.03 Aligned_cols=86 Identities=23% Similarity=0.454 Sum_probs=81.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
.|+.+.|||..|+|-++.++|.-+|++||.|.+|.|+ +|..||.+-.||||+|.+.++++.|.=.|++..|+.+.|+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVI---RD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVI---RDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEE---ecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 4667889999999999999999999999999999999 7999999999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q psy17497 272 LGWGKSVPI 280 (806)
Q Consensus 272 V~~ak~~~~ 280 (806)
|+|+.++..
T Consensus 313 VDFSQSVsk 321 (479)
T KOG0415|consen 313 VDFSQSVSK 321 (479)
T ss_pred eehhhhhhh
Confidence 999988754
No 62
>KOG0132|consensus
Probab=98.83 E-value=5.9e-09 Score=120.98 Aligned_cols=82 Identities=28% Similarity=0.606 Sum_probs=75.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
....++|||||.|+..+++.+|..+|+.||.|.+|.++ .+++||||++..+.+|.+|+..|++..+.++.|
T Consensus 417 isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li---------~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~I 487 (894)
T KOG0132|consen 417 ISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI---------PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTI 487 (894)
T ss_pred eeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeec---------cCCceeEEEEeehhHHHHHHHHHhcccccceee
Confidence 34457999999999999999999999999999999998 568999999999999999999999999999999
Q ss_pred EEEeccCCCCC
Q psy17497 271 KLGWGKSVPIP 281 (806)
Q Consensus 271 rV~~ak~~~~p 281 (806)
+|.||....+-
T Consensus 488 ki~Wa~g~G~k 498 (894)
T KOG0132|consen 488 KIAWAVGKGPK 498 (894)
T ss_pred EEeeeccCCcc
Confidence 99999766543
No 63
>KOG0127|consensus
Probab=98.81 E-value=1.1e-08 Score=114.93 Aligned_cols=81 Identities=19% Similarity=0.343 Sum_probs=74.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHh-----CC-ceeC
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYL-----NG-KDVQ 266 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~L-----nG-~~l~ 266 (806)
....+|||.|||+.+|++.|..+|++||.|..+.|+ .+..||+++|+|||.|.+..+|..||.+. .| ..|+
T Consensus 290 ~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV---~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~ 366 (678)
T KOG0127|consen 290 TEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIV---KDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLD 366 (678)
T ss_pred cccceEEEecCCccccHHHHHHHHHhhccceeEEEE---eccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEe
Confidence 346899999999999999999999999999999999 79999999999999999999999999876 34 6789
Q ss_pred CeeEEEEecc
Q psy17497 267 SYEMKLGWGK 276 (806)
Q Consensus 267 Gr~LrV~~ak 276 (806)
||.|+|..|-
T Consensus 367 GR~Lkv~~Av 376 (678)
T KOG0127|consen 367 GRLLKVTLAV 376 (678)
T ss_pred ccEEeeeecc
Confidence 9999999764
No 64
>KOG0146|consensus
Probab=98.80 E-value=4.6e-09 Score=109.17 Aligned_cols=87 Identities=22% Similarity=0.426 Sum_probs=80.9
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCee
Q psy17497 190 SGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYE 269 (806)
Q Consensus 190 ~~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~ 269 (806)
...|..|||||-.||......+|..+|-.||-|.+.++. .|+.|..+++||||.|.+..+|+.||.+|||+.|+-++
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVF---vDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKR 356 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVF---VDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKR 356 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeee---ehhccccccceeeEecCCchhHHHHHHHhcchhhhhhh
Confidence 345789999999999999999999999999999999998 68899999999999999999999999999999999999
Q ss_pred EEEEeccCCC
Q psy17497 270 MKLGWGKSVP 279 (806)
Q Consensus 270 LrV~~ak~~~ 279 (806)
|+|..-++..
T Consensus 357 LKVQLKRPkd 366 (371)
T KOG0146|consen 357 LKVQLKRPKD 366 (371)
T ss_pred hhhhhcCccc
Confidence 9999877654
No 65
>KOG0109|consensus
Probab=98.80 E-value=7.5e-09 Score=108.93 Aligned_cols=75 Identities=29% Similarity=0.540 Sum_probs=70.9
Q ss_pred CEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEec
Q psy17497 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWG 275 (806)
Q Consensus 196 ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~a 275 (806)
..|||||||..+++.+|+.+|.+||.|.+|.|+ ++||||..++...|+.|+..|+|..|+|..|.|.-+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaS 71 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-----------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEAS 71 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-----------cccceEEeecccccHHHHhhcccceecceEEEEEec
Confidence 469999999999999999999999999999999 799999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy17497 276 KSVPIP 281 (806)
Q Consensus 276 k~~~~p 281 (806)
|+...+
T Consensus 72 ksKsk~ 77 (346)
T KOG0109|consen 72 KSKSKA 77 (346)
T ss_pred cccCCC
Confidence 887544
No 66
>smart00361 RRM_1 RNA recognition motif.
Probab=98.80 E-value=1.5e-08 Score=86.79 Aligned_cols=61 Identities=23% Similarity=0.405 Sum_probs=53.5
Q ss_pred HHHHHHHhc----cCCCeeEEE-EeCCCCcccc--CCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 209 EQQLMEIFG----RYGPLASIK-IMWPRSDEEK--ARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 209 e~~L~~~F~----~fG~I~sVk-I~~Pr~d~~t--g~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
+++|+.+|+ +||.|.+|. |+. +..+ ++++|||||+|.+.++|..|+..|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~---~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYI---DNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEe---CCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888888 999999995 653 3334 889999999999999999999999999999999986
No 67
>KOG0127|consensus
Probab=98.74 E-value=2e-08 Score=112.92 Aligned_cols=81 Identities=25% Similarity=0.479 Sum_probs=72.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEe
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGW 274 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~ 274 (806)
.-.|.|.|||+.|...+|..+|+.||.|..|.|. +.. .|+.+|||||.|....+|..|++.|||..|+||+|-|+|
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP---~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDW 192 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIP---RKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDW 192 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcc---cCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEee
Confidence 5679999999999999999999999999999986 222 356679999999999999999999999999999999999
Q ss_pred ccCCC
Q psy17497 275 GKSVP 279 (806)
Q Consensus 275 ak~~~ 279 (806)
|-+..
T Consensus 193 AV~Kd 197 (678)
T KOG0127|consen 193 AVDKD 197 (678)
T ss_pred ecccc
Confidence 96554
No 68
>KOG0147|consensus
Probab=98.72 E-value=1.3e-08 Score=114.96 Aligned_cols=78 Identities=33% Similarity=0.628 Sum_probs=73.9
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEecc
Q psy17497 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGK 276 (806)
Q Consensus 197 tLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~ak 276 (806)
.||||||-.++++++|+.+|..||.|..|.++ .|.+||+++|||||+|.+.++|.+|+..|||++|-|+.|+|+...
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~---~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLT---KDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeec---cccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 39999999999999999999999999999998 788899999999999999999999999999999999999998764
Q ss_pred C
Q psy17497 277 S 277 (806)
Q Consensus 277 ~ 277 (806)
.
T Consensus 357 ~ 357 (549)
T KOG0147|consen 357 E 357 (549)
T ss_pred e
Confidence 4
No 69
>KOG4206|consensus
Probab=98.70 E-value=3.5e-08 Score=101.26 Aligned_cols=78 Identities=28% Similarity=0.505 Sum_probs=71.6
Q ss_pred CEEEEcCCCCCCcHHHHHH----HhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 196 TNLYLGNLNPKITEQQLME----IFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 196 ttLfVgNLp~~vte~~L~~----~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
.||||.||+..+..++|+. +|++||.|..|... .+.+.||-|||.|.+.+.|-.|+..|+|+.+.|++|+
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~------kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF------KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec------CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3999999999999998887 99999999999887 3568899999999999999999999999999999999
Q ss_pred EEeccCCC
Q psy17497 272 LGWGKSVP 279 (806)
Q Consensus 272 V~~ak~~~ 279 (806)
|.||+...
T Consensus 84 iqyA~s~s 91 (221)
T KOG4206|consen 84 IQYAKSDS 91 (221)
T ss_pred eecccCcc
Confidence 99998664
No 70
>KOG0109|consensus
Probab=98.63 E-value=3.8e-08 Score=103.73 Aligned_cols=75 Identities=29% Similarity=0.524 Sum_probs=70.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
..+|+|+||||.+.++.++|+..|.+||+|..+.|+ ++|+||.|.-.++|..|++.|||.++.|++|+|
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-----------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~v 144 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-----------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHV 144 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeee-----------cceeEEEEeeccchHHHHhcccccccccceeee
Confidence 347899999999999999999999999999999999 789999999999999999999999999999999
Q ss_pred EeccCC
Q psy17497 273 GWGKSV 278 (806)
Q Consensus 273 ~~ak~~ 278 (806)
..+.+.
T Consensus 145 q~stsr 150 (346)
T KOG0109|consen 145 QLSTSR 150 (346)
T ss_pred eeeccc
Confidence 987654
No 71
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.62 E-value=1.1e-07 Score=110.29 Aligned_cols=85 Identities=22% Similarity=0.341 Sum_probs=71.7
Q ss_pred CCCCCEEEEcCCCCCC----------cHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhC
Q psy17497 192 DPCTTNLYLGNLNPKI----------TEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLN 261 (806)
Q Consensus 192 dp~~ttLfVgNLp~~v----------te~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~Ln 261 (806)
...+.+|+|.||...- ..++|+.+|++||.|.+|+|+.|..+..++.+.|++||+|.+.++|+.|+..||
T Consensus 406 ~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~ln 485 (509)
T TIGR01642 406 GKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMN 485 (509)
T ss_pred CCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcC
Confidence 3456789999996321 235789999999999999998665556667788999999999999999999999
Q ss_pred CceeCCeeEEEEecc
Q psy17497 262 GKDVQSYEMKLGWGK 276 (806)
Q Consensus 262 G~~l~Gr~LrV~~ak 276 (806)
|..|+|+.|.|.|-.
T Consensus 486 Gr~~~gr~v~~~~~~ 500 (509)
T TIGR01642 486 GRKFNDRVVVAAFYG 500 (509)
T ss_pred CCEECCeEEEEEEeC
Confidence 999999999999854
No 72
>KOG0123|consensus
Probab=98.54 E-value=1.5e-07 Score=105.34 Aligned_cols=75 Identities=31% Similarity=0.599 Sum_probs=70.0
Q ss_pred CEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEec
Q psy17497 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWG 275 (806)
Q Consensus 196 ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~a 275 (806)
..|||| +.||+..|.++|+.+|+|.+|++. +|. | +-|||||.|.+..+|++||..||...+.|++|+|.|+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc---~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s 72 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVC---RDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWS 72 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEe---ecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehh
Confidence 469999 999999999999999999999999 676 5 8999999999999999999999999999999999999
Q ss_pred cCCC
Q psy17497 276 KSVP 279 (806)
Q Consensus 276 k~~~ 279 (806)
...+
T Consensus 73 ~rd~ 76 (369)
T KOG0123|consen 73 QRDP 76 (369)
T ss_pred ccCC
Confidence 7654
No 73
>KOG4208|consensus
Probab=98.53 E-value=2e-07 Score=94.50 Aligned_cols=81 Identities=11% Similarity=0.240 Sum_probs=72.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccC-CCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRY-GPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~f-G~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
....-+||+.+|..+.+..+..+|.+| |.|..+++- ++..||.++|||||+|++.+.|.-|-..||++.|+|+.|.
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rls---RnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLS---RNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEee---cccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 335669999999999999999999998 667777776 6888999999999999999999999999999999999999
Q ss_pred EEecc
Q psy17497 272 LGWGK 276 (806)
Q Consensus 272 V~~ak 276 (806)
+.+-.
T Consensus 124 c~vmp 128 (214)
T KOG4208|consen 124 CHVMP 128 (214)
T ss_pred eEEeC
Confidence 98743
No 74
>KOG1457|consensus
Probab=98.49 E-value=6.5e-07 Score=91.53 Aligned_cols=86 Identities=14% Similarity=0.287 Sum_probs=72.5
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeC---CeeEE
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQ---SYEMK 271 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~---Gr~Lr 271 (806)
-+||||.+||.++...+|..+|..|-......|-+ ++......+-+|||+|.+..+|..|+++|||..++ +..|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~--Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKY--TSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeee--ccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 58999999999999999999999998877776653 33333345589999999999999999999999986 89999
Q ss_pred EEeccCCCCCC
Q psy17497 272 LGWGKSVPIPS 282 (806)
Q Consensus 272 V~~ak~~~~p~ 282 (806)
|.+||+.....
T Consensus 112 iElAKSNtK~k 122 (284)
T KOG1457|consen 112 IELAKSNTKRK 122 (284)
T ss_pred eeehhcCcccc
Confidence 99999876543
No 75
>KOG4661|consensus
Probab=98.49 E-value=2e-07 Score=104.89 Aligned_cols=83 Identities=18% Similarity=0.415 Sum_probs=76.3
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEe
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGW 274 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~ 274 (806)
.+||||.+|+..+...+|+.+|++||.|.-.+|+ ++..+...++||||++.+..+|.+||..|+...|+|+.|.|.-
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVV---TNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVV---TNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeee---ecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 5799999999999999999999999999999999 6666667789999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy17497 275 GKSVPI 280 (806)
Q Consensus 275 ak~~~~ 280 (806)
++.-+.
T Consensus 482 aKNEp~ 487 (940)
T KOG4661|consen 482 AKNEPG 487 (940)
T ss_pred cccCcc
Confidence 886543
No 76
>KOG0124|consensus
Probab=98.48 E-value=3e-07 Score=99.16 Aligned_cols=79 Identities=15% Similarity=0.379 Sum_probs=73.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEe
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGW 274 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~ 274 (806)
..+|||..+.++.++++|+.+|..||+|.+|.+- ++..++.++||||++|.+......|+..||-+.|+|..|||+-
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LA---r~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLA---RAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEee---ccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 4789999999999999999999999999999998 6777788999999999999999999999999999999999985
Q ss_pred cc
Q psy17497 275 GK 276 (806)
Q Consensus 275 ak 276 (806)
+-
T Consensus 287 ~v 288 (544)
T KOG0124|consen 287 CV 288 (544)
T ss_pred cc
Confidence 54
No 77
>KOG0110|consensus
Probab=98.48 E-value=1.3e-07 Score=109.50 Aligned_cols=91 Identities=22% Similarity=0.394 Sum_probs=79.4
Q ss_pred CCCCCCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeC
Q psy17497 187 SFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQ 266 (806)
Q Consensus 187 s~d~~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~ 266 (806)
.........|+|+|.|||...+-.+++.+|+.||.|.+|+|. .-...+.++|||||.|.+..+|.+|+.+|.+..|.
T Consensus 605 K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlP---KK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHly 681 (725)
T KOG0110|consen 605 KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLP---KKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLY 681 (725)
T ss_pred cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccc---hhhcchhhccceeeeccCcHHHHHHHHhhccccee
Confidence 333444557899999999999999999999999999999997 22445667999999999999999999999999999
Q ss_pred CeeEEEEeccCCCC
Q psy17497 267 SYEMKLGWGKSVPI 280 (806)
Q Consensus 267 Gr~LrV~~ak~~~~ 280 (806)
||.|.+.||+....
T Consensus 682 GRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 682 GRRLVLEWAKSDNT 695 (725)
T ss_pred chhhheehhccchH
Confidence 99999999987654
No 78
>KOG0123|consensus
Probab=98.40 E-value=5.1e-07 Score=101.15 Aligned_cols=75 Identities=24% Similarity=0.498 Sum_probs=69.1
Q ss_pred EEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEeccC
Q psy17497 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKS 277 (806)
Q Consensus 198 LfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~ak~ 277 (806)
|||.||++.++...|..+|+.||.|.+|+++ ++.. | ++|| ||.|.+.+.|.+|+..|||..+.|+.|.|+....
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~---~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVA---TDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEE---EcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 9999999999999999999999999999999 4543 3 8999 9999999999999999999999999999987654
Q ss_pred C
Q psy17497 278 V 278 (806)
Q Consensus 278 ~ 278 (806)
.
T Consensus 153 ~ 153 (369)
T KOG0123|consen 153 K 153 (369)
T ss_pred h
Confidence 3
No 79
>KOG0110|consensus
Probab=98.32 E-value=1.1e-06 Score=101.95 Aligned_cols=82 Identities=28% Similarity=0.423 Sum_probs=70.1
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEe
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGW 274 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~ 274 (806)
.|+|||.||+..++.+.|..+|..+|.|.++.|..-+.....-.+.|||||+|.+.++|.+|+..|||..|+|+.|.|.+
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 34499999999999999999999999999998873111111223559999999999999999999999999999999999
Q ss_pred cc
Q psy17497 275 GK 276 (806)
Q Consensus 275 ak 276 (806)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 87
No 80
>KOG0533|consensus
Probab=98.29 E-value=2.4e-06 Score=90.19 Aligned_cols=86 Identities=26% Similarity=0.405 Sum_probs=76.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
+...++|+|.||++.|++.+|+++|..||.+..+-+.| ...|++.|+|-|.|....||.+||..+||..++|+.|+
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy----~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk 155 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHY----DRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMK 155 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeecc----CCCCCCCccceeeecchHhHHHHHHHhcCcccCCceee
Confidence 44458899999999999999999999999999998874 44688999999999999999999999999999999999
Q ss_pred EEeccCCCCC
Q psy17497 272 LGWGKSVPIP 281 (806)
Q Consensus 272 V~~ak~~~~p 281 (806)
+...-.....
T Consensus 156 ~~~i~~~~~~ 165 (243)
T KOG0533|consen 156 IEIISSPSQS 165 (243)
T ss_pred eEEecCcccc
Confidence 9876655443
No 81
>KOG4212|consensus
Probab=98.29 E-value=1.8e-06 Score=95.14 Aligned_cols=76 Identities=20% Similarity=0.431 Sum_probs=69.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHh-ccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIF-GRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F-~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
.+.+||.|+|+.+.+++|+.+| .+-|.|..|.++. ...|+.||||.|+|.+++.+++|++.||.+.+.||+|.|.
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~----D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLF----DESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeec----ccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 5669999999999999999999 5789999999983 4569999999999999999999999999999999999997
Q ss_pred e
Q psy17497 274 W 274 (806)
Q Consensus 274 ~ 274 (806)
-
T Consensus 120 E 120 (608)
T KOG4212|consen 120 E 120 (608)
T ss_pred c
Confidence 3
No 82
>KOG4212|consensus
Probab=98.27 E-value=1.3e-06 Score=96.26 Aligned_cols=76 Identities=25% Similarity=0.371 Sum_probs=69.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
.+..|+|||.|||.++|++.|+.-|..||.|..+.|| +.|+.+| .|.|.+.++|++|+..|||..|.|+.|+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim------e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~ 604 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM------ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIK 604 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhh------ccCCccc--eEEecCHHHHHHHHHHhccCcccCceee
Confidence 3567899999999999999999999999999999998 3456665 8999999999999999999999999999
Q ss_pred EEec
Q psy17497 272 LGWG 275 (806)
Q Consensus 272 V~~a 275 (806)
|.|.
T Consensus 605 V~y~ 608 (608)
T KOG4212|consen 605 VTYF 608 (608)
T ss_pred eeeC
Confidence 9873
No 83
>KOG1548|consensus
Probab=98.20 E-value=3.5e-06 Score=91.00 Aligned_cols=83 Identities=18% Similarity=0.384 Sum_probs=73.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeE--------EEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCc
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLAS--------IKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGK 263 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~s--------VkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~ 263 (806)
...+++|||.|||..+|-+++..+|++||.|.. |++. ++.. |..+|=|.++|..+++.+.|+..|++.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlY---rd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~ 206 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLY---RDNQ-GKLKGDALCCYIKRESVELAIKILDED 206 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEE---ecCC-CCccCceEEEeecccHHHHHHHHhCcc
Confidence 445788999999999999999999999999853 6776 3443 899999999999999999999999999
Q ss_pred eeCCeeEEEEeccCC
Q psy17497 264 DVQSYEMKLGWGKSV 278 (806)
Q Consensus 264 ~l~Gr~LrV~~ak~~ 278 (806)
.+.|+.|+|.-|+-.
T Consensus 207 ~~rg~~~rVerAkfq 221 (382)
T KOG1548|consen 207 ELRGKKLRVERAKFQ 221 (382)
T ss_pred cccCcEEEEehhhhh
Confidence 999999999988643
No 84
>KOG0226|consensus
Probab=98.15 E-value=2e-06 Score=89.55 Aligned_cols=78 Identities=26% Similarity=0.494 Sum_probs=73.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
.....||.|.|...++.+.|...|.+|-.....+++ ++..||+++|||||.|.+..++.+|+..|||.+++.++|++
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akvi---RdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVI---RDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhcccc---ccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 345679999999999999999999999999999999 79999999999999999999999999999999999999877
Q ss_pred E
Q psy17497 273 G 273 (806)
Q Consensus 273 ~ 273 (806)
.
T Consensus 265 R 265 (290)
T KOG0226|consen 265 R 265 (290)
T ss_pred h
Confidence 5
No 85
>KOG0146|consensus
Probab=98.11 E-value=3.9e-06 Score=87.76 Aligned_cols=81 Identities=17% Similarity=0.444 Sum_probs=70.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeC-C--eeE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQ-S--YEM 270 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~-G--r~L 270 (806)
..++||||-|...-.|++++.+|..||.|.+|.+++ ...|.++||+||.|.+..+|..||+.|+|..-. | ..|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlr----g~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSL 93 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLR----GPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSL 93 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEec----CCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccce
Confidence 357899999999999999999999999999999983 234789999999999999999999999998743 4 678
Q ss_pred EEEeccCC
Q psy17497 271 KLGWGKSV 278 (806)
Q Consensus 271 rV~~ak~~ 278 (806)
.|.|+...
T Consensus 94 VVK~ADTd 101 (371)
T KOG0146|consen 94 VVKFADTD 101 (371)
T ss_pred EEEeccch
Confidence 89998543
No 86
>KOG0106|consensus
Probab=98.06 E-value=3.2e-06 Score=87.57 Aligned_cols=72 Identities=22% Similarity=0.494 Sum_probs=67.1
Q ss_pred CEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEec
Q psy17497 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWG 275 (806)
Q Consensus 196 ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~a 275 (806)
..+|||+||+.+.+.+|..+|..||.+..|.+. .|||||.|.+..+|..|+..|||..|+|-.+.|.|+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~ 70 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHA 70 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-----------cccceeccCchhhhhcccchhcCceecceeeeeecc
Confidence 469999999999999999999999999999876 589999999999999999999999999988999998
Q ss_pred cCC
Q psy17497 276 KSV 278 (806)
Q Consensus 276 k~~ 278 (806)
+..
T Consensus 71 r~~ 73 (216)
T KOG0106|consen 71 RGK 73 (216)
T ss_pred ccc
Confidence 854
No 87
>KOG4209|consensus
Probab=98.06 E-value=1.2e-05 Score=84.76 Aligned_cols=83 Identities=16% Similarity=0.309 Sum_probs=76.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
....+.+||||+.+.+|.+.+..+|..||.|..|.|. .|..+|+++||+||+|.+.+.++.|+. |||..|.|+.+.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~---~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~ 173 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVP---KDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIE 173 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeee---ccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccce
Confidence 3456889999999999999999999999999999998 788888999999999999999999998 999999999999
Q ss_pred EEeccCC
Q psy17497 272 LGWGKSV 278 (806)
Q Consensus 272 V~~ak~~ 278 (806)
|.|-+..
T Consensus 174 vt~~r~~ 180 (231)
T KOG4209|consen 174 VTLKRTN 180 (231)
T ss_pred eeeeeee
Confidence 9988765
No 88
>KOG4205|consensus
Probab=98.04 E-value=3.9e-06 Score=91.67 Aligned_cols=82 Identities=23% Similarity=0.400 Sum_probs=70.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
..++||||+|++.++++.|+..|++||.|..+.|| +|..+++++||+||+|.+.+...+++. ..-..|+|+.|-+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm---~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k 80 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVM---RDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPK 80 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEe---ccCCCCCcccccceecCCCcchheeec-ccccccCCccccce
Confidence 46899999999999999999999999999999999 799999999999999999888888775 33456788887776
Q ss_pred eccCCC
Q psy17497 274 WGKSVP 279 (806)
Q Consensus 274 ~ak~~~ 279 (806)
-+.+..
T Consensus 81 ~av~r~ 86 (311)
T KOG4205|consen 81 RAVSRE 86 (311)
T ss_pred eccCcc
Confidence 665443
No 89
>KOG1847|consensus
Probab=97.99 E-value=2e-06 Score=98.29 Aligned_cols=65 Identities=25% Similarity=0.480 Sum_probs=56.7
Q ss_pred eeeecCCCHHHHHHHHHHHHHHHhcChHHHHHHHhhcCCCCCcccccCCCCCCCchhHHHHHHHhcC
Q psy17497 343 VKVVVPTDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSILQG 409 (806)
Q Consensus 343 V~v~~P~d~~~~~~Idk~a~~V~~~G~~FE~~l~~re~~np~F~FL~d~~sp~h~YYrwrl~s~~~g 409 (806)
+.+.+|+...+..||.+||.||++||.+||-+|+.+|.+||.|.||. .+|-.|.||+| |..++.+
T Consensus 178 ~~~eLPpt~KlH~IIerTaSFV~~~G~Q~EIvlkaKQ~~N~qFgFL~-fDH~Lnpyykf-lQkll~e 242 (878)
T KOG1847|consen 178 LRQELPPTEKLHQIIERTASFVSKHGGQSEIVLKAKQGDNPQFGFLM-FDHHLNPYYKF-LQKLLTE 242 (878)
T ss_pred ccccCCchHHHHHHHHHHHHHHhhcCcceEEEeeeccCCCcccceec-cccccCHHHHH-HHHHHhc
Confidence 45778888899999999999999999999999999999999999995 45569999998 4555544
No 90
>KOG4660|consensus
Probab=97.99 E-value=6.4e-06 Score=93.82 Aligned_cols=72 Identities=33% Similarity=0.540 Sum_probs=65.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
+.++.+|+|-|||..|++++|..+|+.||.|..|+.- ...+|..||+|.+..+|++|+++|++..+.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t--------~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET--------PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc--------cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4567899999999999999999999999999996643 35689999999999999999999999999999988
No 91
>KOG0151|consensus
Probab=97.92 E-value=2.4e-05 Score=90.97 Aligned_cols=77 Identities=31% Similarity=0.482 Sum_probs=47.8
Q ss_pred CCCCCCCCCCCC-CCCCCCCccCCchhhhhhhccCCCCCCCCCCCCCCCccccCcCCCcCCCCCCCCCCCCCCCCcc---
Q psy17497 617 DEDLDGAPLSDV-DGEDLDGVPLDGAALMKSLQRLPHSSSAPDEDDIDGVPCTYNITSATMDGEDLDGVPMDKVKPA--- 692 (806)
Q Consensus 617 ~~didG~pi~~~-~~~d~dgvPld~~~~~~~~~~~~~~~~~~~~ddiDG~P~~~~~~~~~~~~~d~dg~p~~~~~~~--- 692 (806)
++|+||.|++++ .+-+++--|||.++++ |+ ..+|+|||+||..-..+ -..+. +. .++|++|
T Consensus 597 eedldgvple~~~agip~~n~pi~eld~~---------~l-~~dd~ldgipm~~e~~s--s~s~~--~~-~sk~e~vd~~ 661 (877)
T KOG0151|consen 597 EEDLDGVPLEDEDAGIPLMNTPIDELDGR---------PL-NLDDDLDGIPMMVETKS--SLSDP--ET-PSKWEAVDES 661 (877)
T ss_pred hhhccCCCchhhhcCCccccCchhhhccc---------cc-cccccccCceeeeeecc--ccCCC--cc-cccccccCcc
Confidence 689999998732 2445556666666655 42 33689999999521100 01111 11 4677654
Q ss_pred --ccCccCCCCccccCCC
Q psy17497 693 --RAATFIPSKWETVEEN 708 (806)
Q Consensus 693 --~~~~~~~SkWe~vd~~ 708 (806)
.++.+.+|||+.|++.
T Consensus 662 ~~~~q~vstskwe~~~~~ 679 (877)
T KOG0151|consen 662 FKEGQAVSTSKWEHVDDE 679 (877)
T ss_pred cccccccchhhhhhcccc
Confidence 4557788999999887
No 92
>KOG4205|consensus
Probab=97.86 E-value=1.8e-05 Score=86.66 Aligned_cols=83 Identities=23% Similarity=0.440 Sum_probs=74.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
.+..+|||+||+.+++.+|+..|.+||.|..+.|| .|..+.+.+|||||.|.+.+.++.++. .....|+|+.+.|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~---~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevk 171 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIM---YDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVK 171 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEe---ecccccccccceeeEeccccccceecc-cceeeecCceeeEe
Confidence 46789999999999999999999999999999999 799999999999999999999988875 56678999999999
Q ss_pred eccCCCC
Q psy17497 274 WGKSVPI 280 (806)
Q Consensus 274 ~ak~~~~ 280 (806)
-|-+..+
T Consensus 172 rA~pk~~ 178 (311)
T KOG4205|consen 172 RAIPKEV 178 (311)
T ss_pred eccchhh
Confidence 8876643
No 93
>KOG0116|consensus
Probab=97.86 E-value=2.2e-05 Score=88.99 Aligned_cols=79 Identities=20% Similarity=0.370 Sum_probs=65.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEe
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGW 274 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~ 274 (806)
..+|||.|||++++..+|.++|..||.|....|.. +. ..++..+||||+|.+...+..|+.+ +-..|+|++|.|.-
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~v--r~-~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQV--RS-PGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEE 363 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEE--ec-cCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEe
Confidence 45599999999999999999999999999998872 11 2234449999999999999999975 46678999999986
Q ss_pred ccC
Q psy17497 275 GKS 277 (806)
Q Consensus 275 ak~ 277 (806)
-+.
T Consensus 364 k~~ 366 (419)
T KOG0116|consen 364 KRP 366 (419)
T ss_pred ccc
Confidence 554
No 94
>KOG4454|consensus
Probab=97.82 E-value=8.4e-06 Score=83.41 Aligned_cols=78 Identities=23% Similarity=0.321 Sum_probs=68.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
+...||||+|+...|+|+-|.++|-+.|+|..|.|. .+ ..+..+ ||||.|.+.....-|++.|||..+.+.+++|
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip---~~-~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~ 81 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIP---SG-QDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR 81 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCC---CC-ccCCCc-eeeeecccccchhhhhhhcccchhccchhhc
Confidence 345789999999999999999999999999999986 22 234444 9999999999999999999999999999888
Q ss_pred Eec
Q psy17497 273 GWG 275 (806)
Q Consensus 273 ~~a 275 (806)
.+-
T Consensus 82 ~~r 84 (267)
T KOG4454|consen 82 TLR 84 (267)
T ss_pred ccc
Confidence 763
No 95
>KOG1190|consensus
Probab=97.74 E-value=0.00017 Score=79.62 Aligned_cols=78 Identities=21% Similarity=0.475 Sum_probs=69.9
Q ss_pred CCEEEEcCCC-CCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 195 TTNLYLGNLN-PKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 195 ~ttLfVgNLp-~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
++.|.|.||. ..||.+.|..+|+.||.|.+|+|++ ..+--|.|.|.+...|+-|+..|+|..|.|+.|||.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~--------nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt 368 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILY--------NKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVT 368 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeee--------cCCcceeeeecchhHHHHHHHHhhcceecCceEEEe
Confidence 5789999997 5699999999999999999999994 334679999999999999999999999999999999
Q ss_pred eccCCCC
Q psy17497 274 WGKSVPI 280 (806)
Q Consensus 274 ~ak~~~~ 280 (806)
++|-..+
T Consensus 369 ~SKH~~v 375 (492)
T KOG1190|consen 369 LSKHTNV 375 (492)
T ss_pred eccCccc
Confidence 9985543
No 96
>KOG0132|consensus
Probab=97.72 E-value=6.7e-05 Score=88.16 Aligned_cols=130 Identities=11% Similarity=0.231 Sum_probs=106.9
Q ss_pred HHHHHHHHhhcC-----cchHhHHHHHHHHhhcccchHHHHHHHHHHhhcccccchhhhhhhhhhhhhhhhcccCCC-Ch
Q psy17497 463 RHRLEDFLRNLT-----PERVKVAEAMVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKIS-NA 536 (806)
Q Consensus 463 r~~Le~lL~~Lt-----~tr~sI~~~m~w~l~ha~~A~eIvd~i~~sl~~~~t~~~kKLa~LYLinDILhNs~~kv~-na 536 (806)
...|...|.+|. -++..|..++..+|+|.+-..+||..+.+++.. ++...||..||+|..|+-.+.-... +-
T Consensus 4 v~~Fn~eL~SL~DsK~~IS~sKi~~ITkaAikaIk~ykhVVqsVeKfi~k--Ckpe~Kl~gLYVIDSIVRqsrhq~~~~k 81 (894)
T KOG0132|consen 4 VKEFNGELDSLEDSKPGISGSKILKITKAAIKAIKLYKHVVQSVEKFIKK--CKPEYKLPGLYVIDSIVRQSRHQFGKEK 81 (894)
T ss_pred HHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccccCeeEEehHHHHHHHHhhcccc
Confidence 456777777776 477899999999999999999999999999977 5569999999999999998864322 45
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhccccccCCHHHHHHHHHHHcCCC
Q psy17497 537 SFYRRGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWAVYPKDYLIKLQNVFLGLS 603 (806)
Q Consensus 537 ~~yr~~fe~~Lp~IF~~l~~~y~~~~gr~~ae~~k~kV~~VL~iWe~~~vfp~~~l~~L~~~f~g~~ 603 (806)
+.|-..|...+-..|+.|..+ ..+.|.++.++|++|..+.||-.+.|.-|.++..+..
T Consensus 82 d~F~prf~~n~~~tf~~L~~c---------~~edks~iIrvlNlwqkn~VfK~e~IqpLlDm~~~s~ 139 (894)
T KOG0132|consen 82 DVFGPRFSKNFTGTFQNLYEC---------PQEDKSDIIRVLNLWQKNNVFKSEIIQPLLDMADGSG 139 (894)
T ss_pred cccCCccchhHHHHHHHHHhc---------CHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHhccC
Confidence 567777777777777766555 2677889999999999999999999999999987643
No 97
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.69 E-value=0.00017 Score=77.86 Aligned_cols=83 Identities=19% Similarity=0.496 Sum_probs=63.0
Q ss_pred CCCEEEEcCCCCCCcHHH----H--HHHhccCCCeeEEEEeCCCCccccCCcccEE-EEEecChHHHHHHHHHhCCceeC
Q psy17497 194 CTTNLYLGNLNPKITEQQ----L--MEIFGRYGPLASIKIMWPRSDEEKARGRNCG-FVAFMNRKDGERALKYLNGKDVQ 266 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~----L--~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~a-FV~F~~~~dAe~Ai~~LnG~~l~ 266 (806)
+..-+||-+||+.+..++ | .++|++||.|..|.|-. ++.........+| ||+|.+.++|.+||...+|..++
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNk-kt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNK-KTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecc-cccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 356689999999886655 3 37899999999988762 1101111111233 99999999999999999999999
Q ss_pred CeeEEEEeccC
Q psy17497 267 SYEMKLGWGKS 277 (806)
Q Consensus 267 Gr~LrV~~ak~ 277 (806)
||.|+..||..
T Consensus 192 Gr~lkatYGTT 202 (480)
T COG5175 192 GRVLKATYGTT 202 (480)
T ss_pred CceEeeecCch
Confidence 99999999853
No 98
>KOG1457|consensus
Probab=97.58 E-value=5.7e-05 Score=77.65 Aligned_cols=69 Identities=26% Similarity=0.466 Sum_probs=58.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeC
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQ 266 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~ 266 (806)
+..-+.||||.||.++|+|+.|+.+|++|.....++|.- ......|||.|++.+.|..||..|+|..|-
T Consensus 206 ~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-------~~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 206 GARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-------RGGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred cchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-------CCCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 344577999999999999999999999999988888861 133467999999999999999999998763
No 99
>KOG4206|consensus
Probab=97.56 E-value=0.00023 Score=73.60 Aligned_cols=80 Identities=21% Similarity=0.439 Sum_probs=71.7
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeC-C
Q psy17497 189 DSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQ-S 267 (806)
Q Consensus 189 d~~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~-G 267 (806)
....+.+..||+.|||..++.+.|..+|.+|+....|+++.++ ++.|||+|.+...|..|...++|..|- .
T Consensus 140 ~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~--------~~iAfve~~~d~~a~~a~~~lq~~~it~~ 211 (221)
T KOG4206|consen 140 AQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR--------SGIAFVEFLSDRQASAAQQALQGFKITKK 211 (221)
T ss_pred ccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC--------CceeEEecchhhhhHHHhhhhccceeccC
Confidence 3345778899999999999999999999999999999999533 688999999999999999999999987 8
Q ss_pred eeEEEEecc
Q psy17497 268 YEMKLGWGK 276 (806)
Q Consensus 268 r~LrV~~ak 276 (806)
..|+|.+++
T Consensus 212 ~~m~i~~a~ 220 (221)
T KOG4206|consen 212 NTMQITFAK 220 (221)
T ss_pred ceEEecccC
Confidence 999998875
No 100
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.52 E-value=0.00048 Score=63.30 Aligned_cols=80 Identities=20% Similarity=0.277 Sum_probs=66.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHhcc--CCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeC----Cee
Q psy17497 196 TNLYLGNLNPKITEQQLMEIFGR--YGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQ----SYE 269 (806)
Q Consensus 196 ttLfVgNLp~~vte~~L~~~F~~--fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~----Gr~ 269 (806)
|||-|.|+|...|.++|.+++.. .|...-+-+. .|-.++.+.|||||.|.+...|..-...++|..|. .+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLP---iDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kv 78 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLP---IDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKV 78 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEee---eeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcE
Confidence 78999999999999999988854 2444444443 67788899999999999999999999999999986 477
Q ss_pred EEEEeccCC
Q psy17497 270 MKLGWGKSV 278 (806)
Q Consensus 270 LrV~~ak~~ 278 (806)
+.|.||+-.
T Consensus 79 c~i~yAriQ 87 (97)
T PF04059_consen 79 CEISYARIQ 87 (97)
T ss_pred EEEehhHhh
Confidence 899998754
No 101
>KOG1995|consensus
Probab=97.28 E-value=0.00027 Score=77.28 Aligned_cols=85 Identities=16% Similarity=0.308 Sum_probs=76.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeE--------EEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCc
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLAS--------IKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGK 263 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~s--------VkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~ 263 (806)
.....+|||.+||..+++.+|..+|.+||.|.. |.|. ++.+|+..++=|.|+|.+...|+.|+..++++
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y---~dkeT~~~KGeatvS~~D~~~akaai~~~agk 139 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIY---TDKETGAPKGEATVSYEDPPAAKAAIEWFAGK 139 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhcc---ccccccCcCCceeeeecChhhhhhhhhhhccc
Confidence 556778999999999999999999999999853 4444 78899999999999999999999999999999
Q ss_pred eeCCeeEEEEeccCCC
Q psy17497 264 DVQSYEMKLGWGKSVP 279 (806)
Q Consensus 264 ~l~Gr~LrV~~ak~~~ 279 (806)
.++|+.|+|..+....
T Consensus 140 df~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 140 DFCGNTIKVSLAERRT 155 (351)
T ss_pred cccCCCchhhhhhhcc
Confidence 9999999999886543
No 102
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.27 E-value=0.0011 Score=59.00 Aligned_cols=68 Identities=24% Similarity=0.374 Sum_probs=48.5
Q ss_pred CEEEEcCCCCCCcHHH----HHHHhccCCC-eeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 196 TNLYLGNLNPKITEQQ----LMEIFGRYGP-LASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 196 ttLfVgNLp~~vte~~----L~~~F~~fG~-I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
+.|||.|||...+... |+.++.-||. |.+| . .+.|+|.|.+.+.|.+|.+-|+|..+.|+.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~-----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI 69 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S-----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKI 69 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e-----------CCEEEEEeCCHHHHHHHHHhhcccccccceE
Confidence 5799999999888654 6778888885 3332 3 4789999999999999999999999999999
Q ss_pred EEEecc
Q psy17497 271 KLGWGK 276 (806)
Q Consensus 271 rV~~ak 276 (806)
.|.|..
T Consensus 70 ~v~~~~ 75 (90)
T PF11608_consen 70 SVSFSP 75 (90)
T ss_dssp EEESS-
T ss_pred EEEEcC
Confidence 999874
No 103
>KOG0120|consensus
Probab=97.00 E-value=0.0005 Score=79.19 Aligned_cols=82 Identities=18% Similarity=0.415 Sum_probs=76.2
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEe
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGW 274 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~ 274 (806)
...+|||+||..+++..+.++...||++....++ .+..+|.++||||-+|.+......|+..|||..++++.|.|..
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv---~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLV---KDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheee---cccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 4579999999999999999999999999999998 7888899999999999999999999999999999999999998
Q ss_pred ccCCC
Q psy17497 275 GKSVP 279 (806)
Q Consensus 275 ak~~~ 279 (806)
|-...
T Consensus 366 A~~g~ 370 (500)
T KOG0120|consen 366 AIVGA 370 (500)
T ss_pred hhccc
Confidence 86543
No 104
>KOG4210|consensus
Probab=96.91 E-value=0.00066 Score=73.89 Aligned_cols=84 Identities=23% Similarity=0.410 Sum_probs=74.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
+..+-++|+||+..+++++|+.+|..+|.|..+++. .++.++...|||||.|+....+..|+.. +...+.|++++|
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~---~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 258 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLP---TDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRL 258 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccC---CCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccc
Confidence 334445599999999999999999999999999998 7888999999999999999999999887 888899999999
Q ss_pred EeccCCCC
Q psy17497 273 GWGKSVPI 280 (806)
Q Consensus 273 ~~ak~~~~ 280 (806)
.++.+.+-
T Consensus 259 ~~~~~~~~ 266 (285)
T KOG4210|consen 259 EEDEPRPK 266 (285)
T ss_pred ccCCCCcc
Confidence 99887643
No 105
>KOG4211|consensus
Probab=96.87 E-value=0.0054 Score=69.71 Aligned_cols=77 Identities=19% Similarity=0.317 Sum_probs=63.3
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEe
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGW 274 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~ 274 (806)
.--|-+.+||+++|+++|..+|+-|+ |.++.+. ..+|+..|=|||+|.+.++++.|++ .+-..+..+-|.|--
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~-----r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIP-----RRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFT 82 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEe-----ccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEc
Confidence 34577789999999999999999995 6776655 4568999999999999999999997 577777888888876
Q ss_pred ccCC
Q psy17497 275 GKSV 278 (806)
Q Consensus 275 ak~~ 278 (806)
+...
T Consensus 83 ~~~~ 86 (510)
T KOG4211|consen 83 AGGA 86 (510)
T ss_pred cCCc
Confidence 5433
No 106
>KOG0106|consensus
Probab=96.86 E-value=0.00066 Score=70.64 Aligned_cols=70 Identities=27% Similarity=0.451 Sum_probs=62.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
....+.|+|.|++..+.+++|..+|+++|.+..+.++ ++++||+|....+|.+|+..|+|..+.|+.|.
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-----------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~ 164 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-----------RNFAFVEFSEQEDAKRALEKLDGKKLNGRRIS 164 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-----------ccccceeehhhhhhhhcchhccchhhcCceee
Confidence 3456789999999999999999999999998554443 68999999999999999999999999999999
Q ss_pred E
Q psy17497 272 L 272 (806)
Q Consensus 272 V 272 (806)
+
T Consensus 165 ~ 165 (216)
T KOG0106|consen 165 V 165 (216)
T ss_pred e
Confidence 9
No 107
>KOG0147|consensus
Probab=96.78 E-value=0.00066 Score=77.69 Aligned_cols=79 Identities=16% Similarity=0.328 Sum_probs=73.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
..+|+|+-.|+..+++.+|.++|+.+|.|..|+|+ +|..+++++|.|||+|.+......|+ .|.|..+.|-+|.|.
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI---~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRII---GDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEee---ccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEec
Confidence 46789999999999999999999999999999999 89999999999999999999999998 699999999999988
Q ss_pred ecc
Q psy17497 274 WGK 276 (806)
Q Consensus 274 ~ak 276 (806)
...
T Consensus 254 ~sE 256 (549)
T KOG0147|consen 254 LSE 256 (549)
T ss_pred ccH
Confidence 653
No 108
>KOG1855|consensus
Probab=96.67 E-value=0.0017 Score=72.43 Aligned_cols=77 Identities=25% Similarity=0.408 Sum_probs=62.0
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCC---CCccccCC-------cccEEEEEecChHHHHHHH
Q psy17497 188 FDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWP---RSDEEKAR-------GRNCGFVAFMNRKDGERAL 257 (806)
Q Consensus 188 ~d~~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~P---r~d~~tg~-------~rg~aFV~F~~~~dAe~Ai 257 (806)
++...-.+++|.+-|||.+-.-+-|..+|+.||.|++|+|+.| .-+..... .+-||||+|...+.|.+|.
T Consensus 224 ~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~ 303 (484)
T KOG1855|consen 224 FDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAR 303 (484)
T ss_pred ccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence 4444557899999999999888999999999999999999977 22222222 2678999999999999999
Q ss_pred HHhCCce
Q psy17497 258 KYLNGKD 264 (806)
Q Consensus 258 ~~LnG~~ 264 (806)
+.|+...
T Consensus 304 e~~~~e~ 310 (484)
T KOG1855|consen 304 ELLNPEQ 310 (484)
T ss_pred Hhhchhh
Confidence 9886543
No 109
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.38 E-value=0.0072 Score=56.38 Aligned_cols=59 Identities=24% Similarity=0.461 Sum_probs=38.7
Q ss_pred CEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCc
Q psy17497 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGK 263 (806)
Q Consensus 196 ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~ 263 (806)
+.|+|.+++..++.++|+.+|+.||.|..|.+. +...-|||-|.+.+.|+.|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~---------~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFS---------RGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE-----------TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEec---------CCCCEEEEEECCcchHHHHHHHHHhc
Confidence 568899999999999999999999999999887 33457999999999999999866443
No 110
>KOG0120|consensus
Probab=96.28 E-value=0.01 Score=68.66 Aligned_cols=65 Identities=23% Similarity=0.424 Sum_probs=55.5
Q ss_pred HHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEec
Q psy17497 211 QLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWG 275 (806)
Q Consensus 211 ~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~a 275 (806)
+++.-+++||.|.+|.|..|..+.....+.|.-||+|.+.+++++|+.+|.|..+.||.|...|=
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 45567899999999999866445555666788899999999999999999999999999988874
No 111
>KOG0112|consensus
Probab=96.20 E-value=0.009 Score=71.97 Aligned_cols=82 Identities=18% Similarity=0.320 Sum_probs=72.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCC--eeE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQS--YEM 270 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~G--r~L 270 (806)
..+|.+|||+|.+.+.-..|...|..||+|..|.+- +...|++|.|.+...++.|+..|-|..|+| +.|
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~---------hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~ 523 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR---------HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRL 523 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeecc---------cCCcceeeecccCccchhhHHHHhcCcCCCCCccc
Confidence 347889999999999999999999999999887664 456799999999999999999999999996 889
Q ss_pred EEEeccCCCCCCC
Q psy17497 271 KLGWGKSVPIPSY 283 (806)
Q Consensus 271 rV~~ak~~~~p~~ 283 (806)
+|.|+.....+++
T Consensus 524 rvdla~~~~~~Pq 536 (975)
T KOG0112|consen 524 RVDLASPPGATPQ 536 (975)
T ss_pred ccccccCCCCChh
Confidence 9999987765444
No 112
>KOG3152|consensus
Probab=96.18 E-value=0.0032 Score=66.34 Aligned_cols=75 Identities=24% Similarity=0.437 Sum_probs=59.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCcc------ccCCcccE----EEEEecChHHHHHHHHHhCCc
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDE------EKARGRNC----GFVAFMNRKDGERALKYLNGK 263 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~------~tg~~rg~----aFV~F~~~~dAe~Ai~~LnG~ 263 (806)
.+-.||++||||.+...-|+.+|++||.|-.|.+-+ -.+. ..|.+... |.|+|.+...|.++...|||.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqp-E~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQP-EDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecc-hhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 456799999999999999999999999999998862 1111 01222222 679999999999999999999
Q ss_pred eeCCee
Q psy17497 264 DVQSYE 269 (806)
Q Consensus 264 ~l~Gr~ 269 (806)
.|+|+.
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 998865
No 113
>KOG1456|consensus
Probab=96.09 E-value=0.019 Score=63.34 Aligned_cols=77 Identities=26% Similarity=0.295 Sum_probs=64.5
Q ss_pred CCEEEEcCCC--CCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeC--CeeE
Q psy17497 195 TTNLYLGNLN--PKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQ--SYEM 270 (806)
Q Consensus 195 ~ttLfVgNLp--~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~--Gr~L 270 (806)
+..|.+.=|+ +.+|-+.|..+.-..|.|.+|.|+. ++.--|.|+|.+.+.|++|..+|||..|. ..+|
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfk--------kngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTL 191 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFK--------KNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTL 191 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEe--------ccceeeEEeechhHHHHHHHhhcccccccccceeE
Confidence 4455555554 5789999999999999999999982 33456999999999999999999999875 4899
Q ss_pred EEEeccCCC
Q psy17497 271 KLGWGKSVP 279 (806)
Q Consensus 271 rV~~ak~~~ 279 (806)
+|+|||+..
T Consensus 192 KIeyAkP~r 200 (494)
T KOG1456|consen 192 KIEYAKPTR 200 (494)
T ss_pred EEEecCcce
Confidence 999999875
No 114
>KOG1190|consensus
Probab=96.08 E-value=0.014 Score=65.14 Aligned_cols=81 Identities=19% Similarity=0.300 Sum_probs=69.0
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCC-e
Q psy17497 190 SGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQS-Y 268 (806)
Q Consensus 190 ~~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~G-r 268 (806)
..-|++.+|.+.|+|+.++|++|+.+|..-|...+....+ ++.+-++.+.+.+.++|-.|+-.|++..+++ .
T Consensus 409 ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff-------~kd~kmal~q~~sveeA~~ali~~hnh~lgen~ 481 (492)
T KOG1190|consen 409 NIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF-------QKDRKMALPQLESVEEAIQALIDLHNHYLGENH 481 (492)
T ss_pred ccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec-------CCCcceeecccCChhHhhhhccccccccCCCCc
Confidence 3557788999999999999999999999888765554332 3567799999999999999999999999985 5
Q ss_pred eEEEEeccC
Q psy17497 269 EMKLGWGKS 277 (806)
Q Consensus 269 ~LrV~~ak~ 277 (806)
.|||+|+|.
T Consensus 482 hlRvSFSks 490 (492)
T KOG1190|consen 482 HLRVSFSKS 490 (492)
T ss_pred eEEEEeecc
Confidence 899999985
No 115
>KOG1456|consensus
Probab=95.91 E-value=0.04 Score=60.86 Aligned_cols=83 Identities=18% Similarity=0.221 Sum_probs=72.1
Q ss_pred CCCCCCEEEEcCCCCC-CcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCee
Q psy17497 191 GDPCTTNLYLGNLNPK-ITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYE 269 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~-vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~ 269 (806)
+....+-+.|-+|... ++-+.|..+|..||.|..|++|. ...|.|.|++.+....++|+..||+..+-|.+
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmk--------Tk~gtamVemgd~~aver~v~hLnn~~lfG~k 354 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMK--------TKPGTAMVEMGDAYAVERAVTHLNNIPLFGGK 354 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEee--------cccceeEEEcCcHHHHHHHHHHhccCccccce
Confidence 4556788999999865 56688999999999999999993 34688999999999999999999999999999
Q ss_pred EEEEeccCCCCC
Q psy17497 270 MKLGWGKSVPIP 281 (806)
Q Consensus 270 LrV~~ak~~~~p 281 (806)
|.|.+++..-+.
T Consensus 355 l~v~~SkQ~~v~ 366 (494)
T KOG1456|consen 355 LNVCVSKQNFVS 366 (494)
T ss_pred EEEeeccccccc
Confidence 999998866543
No 116
>KOG4849|consensus
Probab=95.80 E-value=0.044 Score=60.01 Aligned_cols=76 Identities=16% Similarity=0.307 Sum_probs=62.4
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCC--eeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCe-eEEEE
Q psy17497 197 NLYLGNLNPKITEQQLMEIFGRYGP--LASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSY-EMKLG 273 (806)
Q Consensus 197 tLfVgNLp~~vte~~L~~~F~~fG~--I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr-~LrV~ 273 (806)
.+|||||-+.+|.++|.+.....|- +..+++. .++.+|.++|||.|...+.......|+.|--+.|+|. ++.+.
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFF---ENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFF---ENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhh---hcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 4999999999999999988877664 6777777 5667899999999999999999999999988888884 44444
Q ss_pred ec
Q psy17497 274 WG 275 (806)
Q Consensus 274 ~a 275 (806)
|.
T Consensus 159 ~N 160 (498)
T KOG4849|consen 159 YN 160 (498)
T ss_pred cc
Confidence 43
No 117
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.70 E-value=0.021 Score=46.68 Aligned_cols=52 Identities=27% Similarity=0.562 Sum_probs=42.2
Q ss_pred CEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHH
Q psy17497 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257 (806)
Q Consensus 196 ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai 257 (806)
+.|-|.+.++...+. +..+|..||.|..+.+- ....+.+|.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~---------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP---------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC---------CCCcEEEEEECCHHHHHhhC
Confidence 567888888877655 45588899999998764 34689999999999999985
No 118
>KOG1548|consensus
Probab=95.54 E-value=0.035 Score=60.93 Aligned_cols=74 Identities=14% Similarity=0.308 Sum_probs=60.0
Q ss_pred CCCEEEEcCCCC----CCc-------HHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCC
Q psy17497 194 CTTNLYLGNLNP----KIT-------EQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNG 262 (806)
Q Consensus 194 ~~ttLfVgNLp~----~vt-------e~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG 262 (806)
..++|.+.|+=. ..+ .++|.+-..+||.|.+|.|. + .++.|.+-|.|.+.++|..||+.|+|
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~----d---~hPdGvvtV~f~n~eeA~~ciq~m~G 336 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY----D---RHPDGVVTVSFRNNEEADQCIQTMDG 336 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe----c---cCCCceeEEEeCChHHHHHHHHHhcC
Confidence 357888888732 122 35667778999999999887 2 25679999999999999999999999
Q ss_pred ceeCCeeEEEEe
Q psy17497 263 KDVQSYEMKLGW 274 (806)
Q Consensus 263 ~~l~Gr~LrV~~ 274 (806)
..++||.|....
T Consensus 337 R~fdgRql~A~i 348 (382)
T KOG1548|consen 337 RWFDGRQLTASI 348 (382)
T ss_pred eeecceEEEEEE
Confidence 999999987763
No 119
>KOG2314|consensus
Probab=95.13 E-value=0.034 Score=64.17 Aligned_cols=76 Identities=20% Similarity=0.307 Sum_probs=59.4
Q ss_pred CCEEEEcCCCCCCc------HHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeC-C
Q psy17497 195 TTNLYLGNLNPKIT------EQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQ-S 267 (806)
Q Consensus 195 ~ttLfVgNLp~~vt------e~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~-G 267 (806)
.+-|+|.|+|---. ...|..+|+++|+|..+.+. -++.+ ..+||.|++|.+..+|+.|++.|||+.|+ +
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P---~~e~g-gtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYP---IDEEG-GTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeec---cCccC-CeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 45688988874321 23467899999988877664 34544 48999999999999999999999999987 6
Q ss_pred eeEEEEe
Q psy17497 268 YEMKLGW 274 (806)
Q Consensus 268 r~LrV~~ 274 (806)
+++.|..
T Consensus 134 Htf~v~~ 140 (698)
T KOG2314|consen 134 HTFFVRL 140 (698)
T ss_pred ceEEeeh
Confidence 7777763
No 120
>KOG0129|consensus
Probab=95.06 E-value=0.047 Score=62.67 Aligned_cols=64 Identities=25% Similarity=0.549 Sum_probs=50.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCC--ccc---EEEEEecChHHHHHHHHHh
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKAR--GRN---CGFVAFMNRKDGERALKYL 260 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~--~rg---~aFV~F~~~~dAe~Ai~~L 260 (806)
-++.||||+||+.++|+.|...|..||. +.+-||++....++ .+| |.|+.|++......-+.+.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs---~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGS---VKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccc---eEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 3678999999999999999999999997 45678875554433 456 9999999988776655544
No 121
>KOG2193|consensus
Probab=95.04 E-value=0.02 Score=63.92 Aligned_cols=74 Identities=24% Similarity=0.388 Sum_probs=59.4
Q ss_pred CEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCce-eCCeeEEEEe
Q psy17497 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKD-VQSYEMKLGW 274 (806)
Q Consensus 196 ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~-l~Gr~LrV~~ 274 (806)
+.||+|||.+.++..+|..+|+..-.-.+-.++ -..||+||.+.+...|.+|++.++|+. +.|.++.|.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl---------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~ 72 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL---------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEH 72 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee---------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccc
Confidence 469999999999999999999754222222222 246999999999999999999999986 8899999887
Q ss_pred ccCC
Q psy17497 275 GKSV 278 (806)
Q Consensus 275 ak~~ 278 (806)
.-+.
T Consensus 73 sv~k 76 (584)
T KOG2193|consen 73 SVPK 76 (584)
T ss_pred hhhH
Confidence 6443
No 122
>KOG0112|consensus
Probab=94.97 E-value=0.0074 Score=72.68 Aligned_cols=81 Identities=25% Similarity=0.389 Sum_probs=70.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
..+.|||+|||+..+++.+|+..|..||.|.+|.|-.|+ .+...-||||.|.+...+-.|+..+.|..|....+++
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~----~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH----IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC----CCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 347899999999999999999999999999999987443 2455679999999999999999999999998778888
Q ss_pred EeccC
Q psy17497 273 GWGKS 277 (806)
Q Consensus 273 ~~ak~ 277 (806)
+++..
T Consensus 446 glG~~ 450 (975)
T KOG0112|consen 446 GLGQP 450 (975)
T ss_pred ccccc
Confidence 88854
No 123
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=94.92 E-value=0.13 Score=48.19 Aligned_cols=100 Identities=17% Similarity=0.326 Sum_probs=71.7
Q ss_pred cchHhHHHHHHHHhhcccchHHHHHHHHHHhhcccccchhhhhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHH
Q psy17497 475 PERVKVAEAMVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASFYRRGFESRLFQIFTEM 554 (806)
Q Consensus 475 ~tr~sI~~~m~w~l~ha~~A~eIvd~i~~sl~~~~t~~~kKLa~LYLinDILhNs~~kv~na~~yr~~fe~~Lp~IF~~l 554 (806)
+....|.++...+-+....+.+++..|.+.|... ....++--|+|+--++.||... |...|....-.+ ..+
T Consensus 16 p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~--~~~~~lkaL~lLe~lvkN~g~~------f~~~i~~~~~~~-~l~ 86 (115)
T cd00197 16 PDWPLIMEICDLINETNVGPKEAVDAIKKRINNK--NPHVVLKALTLLEYCVKNCGER------FHQEVASNDFAV-ELL 86 (115)
T ss_pred CCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHccHH------HHHHHHHhHHHH-HHH
Confidence 3555666666666566667899999999999764 5688999999999999999653 555555543221 222
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHhhccc
Q psy17497 555 HITYVNLESRLKAEGLRTRVMQVFRAWED 583 (806)
Q Consensus 555 ~~~y~~~~gr~~ae~~k~kV~~VL~iWe~ 583 (806)
...|....|+.....+|+++..++..|-+
T Consensus 87 ~~~~~~~~~~~~~~~Vr~k~~~l~~~w~~ 115 (115)
T cd00197 87 KFDKSKLLGDDVSTNVREKAIELVQLWAS 115 (115)
T ss_pred HhhccccccCCCChHHHHHHHHHHHHHhC
Confidence 22334455666678999999999999953
No 124
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.87 E-value=0.098 Score=48.51 Aligned_cols=78 Identities=17% Similarity=0.178 Sum_probs=51.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCc------cccCCcccEEEEEecChHHHHHHHHHhCCceeCCe
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSD------EEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSY 268 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d------~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr 268 (806)
.+-|.|-+.|+. ....+...|++||.|.+..-+. ++ .......++-.|.|.++.+|.+|+. -||..+.|.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~--~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVL--RSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG------------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeeccc--ccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 456888899988 4566778999999988764110 00 0011356789999999999999997 799999885
Q ss_pred e-EEEEecc
Q psy17497 269 E-MKLGWGK 276 (806)
Q Consensus 269 ~-LrV~~ak 276 (806)
. +-|.|.+
T Consensus 82 ~mvGV~~~~ 90 (100)
T PF05172_consen 82 LMVGVKPCD 90 (100)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEEEcH
Confidence 4 4566653
No 125
>KOG4211|consensus
Probab=94.55 E-value=0.093 Score=60.01 Aligned_cols=77 Identities=17% Similarity=0.212 Sum_probs=57.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
+...|-+.+||+.||+++|.++|+-.-.|...-++ .....++..|=|||.|++.+.|+.|+. -+...|+-+-|.|-
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l---~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF 177 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILL---PMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVF 177 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceee---eccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEee
Confidence 34568899999999999999999877555442222 234567888999999999999999986 34555666666665
Q ss_pred e
Q psy17497 274 W 274 (806)
Q Consensus 274 ~ 274 (806)
-
T Consensus 178 ~ 178 (510)
T KOG4211|consen 178 R 178 (510)
T ss_pred h
Confidence 3
No 126
>KOG4307|consensus
Probab=94.44 E-value=0.1 Score=61.55 Aligned_cols=76 Identities=24% Similarity=0.351 Sum_probs=64.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCee-EEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLA-SIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~-sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
.+-|-+.|+|..++-++|.++|.-|-.+- +|.|- -...|...|=|-|.|++.++|.+|...|+++.|..+.|.|.
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r----~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIR----RNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEe----ecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 35788999999999999999999997654 45554 23457888999999999999999999999999999999886
Q ss_pred e
Q psy17497 274 W 274 (806)
Q Consensus 274 ~ 274 (806)
.
T Consensus 943 i 943 (944)
T KOG4307|consen 943 I 943 (944)
T ss_pred e
Confidence 4
No 127
>KOG2416|consensus
Probab=94.31 E-value=0.093 Score=61.08 Aligned_cols=80 Identities=18% Similarity=0.246 Sum_probs=65.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhcc-CCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCcee---CC
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGR-YGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDV---QS 267 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~-fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l---~G 267 (806)
.+.++.|||.||-.-.|.-.|+.++++ +|.|... +| | +-+..|||.|.+.++|.....+|+|..| ++
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm----D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNP 511 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM----D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNP 511 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH-HH----H----HhhcceeEecccHHHHHHHHHHHhccccCCCCC
Confidence 344778999999999999999999995 5556555 44 2 4567899999999999999999999987 46
Q ss_pred eeEEEEeccCCCC
Q psy17497 268 YEMKLGWGKSVPI 280 (806)
Q Consensus 268 r~LrV~~ak~~~~ 280 (806)
+.|.+.|+....+
T Consensus 512 K~L~adf~~~del 524 (718)
T KOG2416|consen 512 KHLIADFVRADEL 524 (718)
T ss_pred ceeEeeecchhHH
Confidence 8899999865543
No 128
>KOG0129|consensus
Probab=94.28 E-value=0.091 Score=60.43 Aligned_cols=63 Identities=21% Similarity=0.329 Sum_probs=57.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhc-cCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHH
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFG-RYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKY 259 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~-~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~ 259 (806)
..+|||||+||.-++..+|..+|. -||.|..|-|= +|.+-+..+|-|=|+|.+...--+||.+
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGID---tD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGID---TDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEec---cCcccCCCCCcceeeecccHHHHHHHhh
Confidence 378999999999999999999998 79999999997 7877888999999999999998899864
No 129
>KOG4676|consensus
Probab=94.10 E-value=0.18 Score=56.22 Aligned_cols=79 Identities=16% Similarity=0.323 Sum_probs=59.8
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE-Eec
Q psy17497 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL-GWG 275 (806)
Q Consensus 197 tLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV-~~a 275 (806)
.|-|.||.+.+|.+.++.+|+-.|.|..+++++...+..-....-.|||.|.+...+..|.. |.++++-++.|-| -|+
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEecC
Confidence 79999999999999999999999999999998422232223455689999999988888865 6666655555444 444
Q ss_pred c
Q psy17497 276 K 276 (806)
Q Consensus 276 k 276 (806)
.
T Consensus 88 ~ 88 (479)
T KOG4676|consen 88 D 88 (479)
T ss_pred C
Confidence 3
No 130
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.06 E-value=0.2 Score=49.31 Aligned_cols=56 Identities=21% Similarity=0.441 Sum_probs=45.7
Q ss_pred HHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEeccCC
Q psy17497 211 QLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSV 278 (806)
Q Consensus 211 ~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~ak~~ 278 (806)
.|...|..||.+.-||++ .+.-.|+|.+-..|-+|+. |+|..++|+.|+|..-.+.
T Consensus 52 ~ll~~~~~~GevvLvRfv-----------~~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFV-----------GDTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEE-----------TTCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEe-----------CCeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 677889999999999998 2568899999999999996 9999999999999865443
No 131
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.80 E-value=0.2 Score=49.05 Aligned_cols=76 Identities=14% Similarity=0.387 Sum_probs=58.7
Q ss_pred CCCCCCCEEEEcCCCCCCc----HHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCcee
Q psy17497 190 SGDPCTTNLYLGNLNPKIT----EQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDV 265 (806)
Q Consensus 190 ~~dp~~ttLfVgNLp~~vt----e~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l 265 (806)
.-+|...||.|.=|..++. -..+....+.||+|.+|... ++..|.|.|.+..+|-+|+.+++. ..
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c----------GrqsavVvF~d~~SAC~Av~Af~s-~~ 149 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC----------GRQSAVVVFKDITSACKAVSAFQS-RA 149 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec----------CCceEEEEehhhHHHHHHHHhhcC-CC
Confidence 3467788888876655543 34455566899999999887 356799999999999999999876 55
Q ss_pred CCeeEEEEecc
Q psy17497 266 QSYEMKLGWGK 276 (806)
Q Consensus 266 ~Gr~LrV~~ak 276 (806)
-|..++..|-.
T Consensus 150 pgtm~qCsWqq 160 (166)
T PF15023_consen 150 PGTMFQCSWQQ 160 (166)
T ss_pred CCceEEeeccc
Confidence 68888888853
No 132
>KOG1365|consensus
Probab=93.77 E-value=0.91 Score=50.74 Aligned_cols=75 Identities=13% Similarity=0.217 Sum_probs=61.4
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCC-eeE--EEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGP-LAS--IKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~-I~s--VkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
...|-+.+||+..+-++|..+|+.|-. |.- |.++ -...|+..|=|||.|.+.++|..|+...+.+...+|.|.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv----~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiE 355 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMV----LNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIE 355 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEE----EcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEE
Confidence 456899999999999999999998865 322 6665 234588899999999999999999988888777788877
Q ss_pred EE
Q psy17497 272 LG 273 (806)
Q Consensus 272 V~ 273 (806)
|=
T Consensus 356 vf 357 (508)
T KOG1365|consen 356 VF 357 (508)
T ss_pred Ee
Confidence 64
No 133
>KOG2071|consensus
Probab=93.71 E-value=0.18 Score=59.12 Aligned_cols=102 Identities=21% Similarity=0.407 Sum_probs=85.1
Q ss_pred HHHHHHhhcC-cchHhHHHHHHHHhhcccchHHHHHHHHHHhhcccccchhhhhhhhhhhhhhhhcccCCCChhhHHHHH
Q psy17497 465 RLEDFLRNLT-PERVKVAEAMVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASFYRRGF 543 (806)
Q Consensus 465 ~Le~lL~~Lt-~tr~sI~~~m~w~l~ha~~A~eIvd~i~~sl~~~~t~~~kKLa~LYLinDILhNs~~kv~na~~yr~~f 543 (806)
.+...|..|| +++.-|-.++.-+-++..+|..||+.|...|.. .|...||-.+||+.-|+-|-.+. |..+|
T Consensus 8 dy~s~ledltfnskp~i~~lt~la~En~~~a~~iv~~iE~hi~k--cpp~~kL~~~y~~dsi~knvg~p------y~~~f 79 (579)
T KOG2071|consen 8 DYQSSLEDLTFNSKPIINTLTILAEENLPFAKSIVSAIEAHIAK--CPPSQKLPVMYLLDSIVKNVGSP------YTTAF 79 (579)
T ss_pred HHHHHHHHHhcCCcchhHHhhHhhhhcccccHHHHHHHHHHHhh--CCcccccchhhhhHHHHhhcCCc------chhhh
Confidence 3556677777 789999999999999999999999999999976 56699999999999999987543 88899
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhcc
Q psy17497 544 ESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWE 582 (806)
Q Consensus 544 e~~Lp~IF~~l~~~y~~~~gr~~ae~~k~kV~~VL~iWe 582 (806)
...|...|.+ +|..++ +-.+.++.+++-.|.
T Consensus 80 s~~l~a~f~~---~~~~vd-----~r~r~~l~~~~~tw~ 110 (579)
T KOG2071|consen 80 SRNLVATFIC---AFTKVD-----ERTRTSLFKLRATWD 110 (579)
T ss_pred hhhHHHHHHH---HHhhcc-----ccccchhHhhHHhhc
Confidence 9988888765 666665 445668888998887
No 134
>KOG1996|consensus
Probab=93.21 E-value=0.18 Score=54.31 Aligned_cols=63 Identities=17% Similarity=0.172 Sum_probs=48.8
Q ss_pred HHHHHHhccCCCeeEEEEeCCCCccccC-CcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEec
Q psy17497 210 QQLMEIFGRYGPLASIKIMWPRSDEEKA-RGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWG 275 (806)
Q Consensus 210 ~~L~~~F~~fG~I~sVkI~~Pr~d~~tg-~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~a 275 (806)
+++...+++||.|..|-|.- ++.-- ...---||+|...++|.+|+-.|||.+++|+.++..|-
T Consensus 301 de~keEceKyg~V~~viife---ip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFE---IPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEe---cCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 45677889999999997762 21111 11234699999999999999999999999999887763
No 135
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.53 E-value=0.37 Score=49.48 Aligned_cols=64 Identities=22% Similarity=0.405 Sum_probs=47.5
Q ss_pred cHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhC--CceeCCeeEEEEeccCCCC
Q psy17497 208 TEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLN--GKDVQSYEMKLGWGKSVPI 280 (806)
Q Consensus 208 te~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~Ln--G~~l~Gr~LrV~~ak~~~~ 280 (806)
....|+.+|..|+.+.....+ ++-+-..|.|.+.+.|.+|...|+ +..++|..|+|.|+....+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L---------~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPL---------KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTPI 73 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEE---------TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS-
T ss_pred hHHHHHHHHHhcCCceEEEEc---------CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccccc
Confidence 347899999999999998887 344557899999999999999999 9999999999999966554
No 136
>KOG1847|consensus
Probab=91.67 E-value=0.12 Score=60.52 Aligned_cols=61 Identities=20% Similarity=0.069 Sum_probs=50.9
Q ss_pred eeeecCCCHHHHHHHHHHHHHHHhcChHHHHHHHhhcCCCCCcccccCCCCCCCchhHHHHHHH
Q psy17497 343 VKVVVPTDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSI 406 (806)
Q Consensus 343 V~v~~P~d~~~~~~Idk~a~~V~~~G~~FE~~l~~re~~np~F~FL~d~~sp~h~YYrwrl~s~ 406 (806)
|--.||+.+.+.-+|+..|+||+++|..||+-+..+ ++-.|.|+- ...+|+.||-++.-.+
T Consensus 416 v~~~ip~~pd~~p~v~~~aE~Vaq~Gl~~e~S~~a~--~d~~~~f~~-pk~~y~~yy~~kk~~~ 476 (878)
T KOG1847|consen 416 VLQEIPELPDGDPGVIIRAEDVAQEGLAVEDSKHAF--GDVLPDFSA-PKEKYKMYYDKKKVEL 476 (878)
T ss_pred hhhhCCCCCCCchHHHHHHHHHHhhchhhhhhhhhh--cccChhhcc-chhhhhhhhhhhhhhh
Confidence 444677777888999999999999999999998765 788999995 5678999999887543
No 137
>KOG2068|consensus
Probab=91.51 E-value=0.086 Score=57.89 Aligned_cols=80 Identities=20% Similarity=0.397 Sum_probs=60.7
Q ss_pred CEEEEcCCCCCCcHH-HHH--HHhccCCCeeEEEEeCCCCcc--ccCC-cccEEEEEecChHHHHHHHHHhCCceeCCee
Q psy17497 196 TNLYLGNLNPKITEQ-QLM--EIFGRYGPLASIKIMWPRSDE--EKAR-GRNCGFVAFMNRKDGERALKYLNGKDVQSYE 269 (806)
Q Consensus 196 ttLfVgNLp~~vte~-~L~--~~F~~fG~I~sVkI~~Pr~d~--~tg~-~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~ 269 (806)
.-+||-+|++.+..+ .|. +.|++||.|.+|.+- .+. ..+. ...-++|+|...++|.+||...+|+.++|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~---~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKN---KDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeec---CCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 457888898776544 443 679999999999876 232 1111 1223799999999999999999999999999
Q ss_pred EEEEeccCC
Q psy17497 270 MKLGWGKSV 278 (806)
Q Consensus 270 LrV~~ak~~ 278 (806)
|+..++...
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 988887543
No 138
>KOG0128|consensus
Probab=91.27 E-value=0.021 Score=68.72 Aligned_cols=69 Identities=22% Similarity=0.434 Sum_probs=59.4
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeC
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQ 266 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~ 266 (806)
.+++||.||++.+.+.+|...|+.+|.+..|+|. ....+++.+|+|+|.|...+++.+|+...++..++
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~---~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIV---IHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHH---HHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 4579999999999999999999999999888776 45667899999999999999999999865555444
No 139
>KOG0115|consensus
Probab=91.01 E-value=0.47 Score=50.53 Aligned_cols=64 Identities=20% Similarity=0.401 Sum_probs=54.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCc
Q psy17497 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGK 263 (806)
Q Consensus 196 ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~ 263 (806)
..|||.||+..++.+.|...|.+||+|....++ -...++..+=++|.|.+...|..|+..++-.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~----vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAK----VDDRGKPTREGIVEFAKKPNARKAARRCREG 95 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheee----ecccccccccchhhhhcchhHHHHHHHhccC
Confidence 779999999999999999999999999886665 2345677788999999999999999877433
No 140
>KOG2202|consensus
Probab=90.72 E-value=0.13 Score=54.73 Aligned_cols=61 Identities=18% Similarity=0.286 Sum_probs=49.7
Q ss_pred HHHHHhc-cCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEec
Q psy17497 211 QLMEIFG-RYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWG 275 (806)
Q Consensus 211 ~L~~~F~-~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~a 275 (806)
+|...|. +||.|..++|. +...-.-.|-.+|.|...++|++|+..|||..+.|++|...+.
T Consensus 84 d~f~E~~~kygEiee~~Vc----~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVC----DNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhhh----cccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 4445555 99999999876 2222345678999999999999999999999999999998875
No 141
>KOG0128|consensus
Probab=89.75 E-value=0.28 Score=59.48 Aligned_cols=79 Identities=9% Similarity=0.153 Sum_probs=68.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEe
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGW 274 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~ 274 (806)
...|||.|+|+..|.+.|+.+|..+|.+.+++++ ....|+.+|.+||.|.+..++.+++..+++..+.-+.+.|..
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~v----t~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLV----TVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchh----hhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccc
Confidence 4679999999999999999999999999999876 234588999999999999999999988888887777777776
Q ss_pred ccC
Q psy17497 275 GKS 277 (806)
Q Consensus 275 ak~ 277 (806)
+.+
T Consensus 812 snp 814 (881)
T KOG0128|consen 812 SNP 814 (881)
T ss_pred cCC
Confidence 554
No 142
>KOG4574|consensus
Probab=88.58 E-value=0.37 Score=58.35 Aligned_cols=74 Identities=27% Similarity=0.411 Sum_probs=62.7
Q ss_pred EEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCcee--CCeeEEEEec
Q psy17497 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDV--QSYEMKLGWG 275 (806)
Q Consensus 198 LfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l--~Gr~LrV~~a 275 (806)
.++.|.+-..+-..|..+|+.||.|.++..+ +.-+.|.|.|...+.|-.|+.+|+|+.+ -|-+.+|.+|
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtl---------r~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTL---------RDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheec---------ccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 3444555667888899999999999999877 4567899999999999999999999985 4889999999
Q ss_pred cCCCC
Q psy17497 276 KSVPI 280 (806)
Q Consensus 276 k~~~~ 280 (806)
+..+.
T Consensus 372 k~~~~ 376 (1007)
T KOG4574|consen 372 KTLPM 376 (1007)
T ss_pred ccccc
Confidence 98764
No 143
>KOG0105|consensus
Probab=86.76 E-value=1.6 Score=44.63 Aligned_cols=63 Identities=16% Similarity=0.294 Sum_probs=55.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeC
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQ 266 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~ 266 (806)
..-.|.|.+||++-++++|+.+...-|.|....+. + -|+|.|.|...++.+-|+..|+...+.
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~---r-------Dg~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQ---R-------DGVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeee---c-------ccceeeeeeehhhHHHHHHhhcccccc
Confidence 34579999999999999999999999999888776 1 358999999999999999999887654
No 144
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=84.90 E-value=3.5 Score=37.16 Aligned_cols=56 Identities=14% Similarity=0.380 Sum_probs=40.5
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhC
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLN 261 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~Ln 261 (806)
...||--..|......+|..+|+.||.|. |..+ .-..|||...+++.|..|+..+.
T Consensus 8 RdHVFhltFPkeWK~~DI~qlFspfG~I~-VsWi----------~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWI----------NDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE--TT--HHHHHHHCCCCCCEE-EEEE----------CTTEEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEeCchHhhhhhHHHHhccCCcEE-EEEE----------cCCcEEEEeecHHHHHHHHHHhc
Confidence 33444444999999999999999999864 4444 23569999999999999998875
No 145
>KOG4285|consensus
Probab=84.63 E-value=2.7 Score=45.93 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=50.0
Q ss_pred CEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 196 ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
+=|-|-+.|+.-. ..|..+|.+||.|.+... +++.++-+|.|.++.+|++||. -||..|+|..|
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~---------~~ngNwMhirYssr~~A~KALs-kng~ii~g~vm 261 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVT---------PSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVM 261 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeec---------CCCCceEEEEecchhHHHHhhh-hcCeeeccceE
Confidence 4455667777654 567789999999887532 3556899999999999999997 69999988654
No 146
>KOG2135|consensus
Probab=84.24 E-value=0.76 Score=52.63 Aligned_cols=77 Identities=21% Similarity=0.326 Sum_probs=61.6
Q ss_pred CCCEEEEcCCCCCC-cHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 194 CTTNLYLGNLNPKI-TEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 194 ~~ttLfVgNLp~~v-te~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
..+.|-+.-.++.. +-.+|..+|.+||.|..|.|-+ +.-.|.|+|.++.+|-.|.. ..+..|+|+.|+|
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~---------~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl 440 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY---------SSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKL 440 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccC---------chhhheeeeeccccccchhc-cccceecCceeEE
Confidence 35556666666665 4588999999999999998863 24569999999999977764 7899999999999
Q ss_pred EeccCCCC
Q psy17497 273 GWGKSVPI 280 (806)
Q Consensus 273 ~~ak~~~~ 280 (806)
-|-++.+.
T Consensus 441 ~whnps~~ 448 (526)
T KOG2135|consen 441 FWHNPSPV 448 (526)
T ss_pred EEecCCcc
Confidence 99987653
No 147
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=81.33 E-value=7.5 Score=37.85 Aligned_cols=102 Identities=16% Similarity=0.410 Sum_probs=63.3
Q ss_pred HHHHHhhcCc---chHhHHHHHHHH---hhcccchHHHHHHHHHHhhcccccchhhhhhhhhhhhhhhhcccCCCChhhH
Q psy17497 466 LEDFLRNLTP---ERVKVAEAMVFC---MEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASFY 539 (806)
Q Consensus 466 Le~lL~~Lt~---tr~sI~~~m~w~---l~ha~~A~eIvd~i~~sl~~~~t~~~kKLa~LYLinDILhNs~~kv~na~~y 539 (806)
|+.+|...|. ...+....+..| -.....+.+++.+|.+.|... +....+.-|.|+.-++.||... |
T Consensus 6 ~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~--~~~vq~~aL~lld~lvkNcg~~------f 77 (140)
T PF00790_consen 6 ITELIEKATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHG--NPNVQLLALTLLDALVKNCGPR------F 77 (140)
T ss_dssp HHHHHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHHSHHH------H
T ss_pred HHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHcCCHH------H
Confidence 5555655552 233444444333 233456899999999999873 3477788899999999999643 3
Q ss_pred HHH-----HHHHHHHHHHHHHHhhhhhhhhhhhHH--HHHHHHHHHhhccccc
Q psy17497 540 RRG-----FESRLFQIFTEMHITYVNLESRLKAEG--LRTRVMQVFRAWEDWA 585 (806)
Q Consensus 540 r~~-----fe~~Lp~IF~~l~~~y~~~~gr~~ae~--~k~kV~~VL~iWe~~~ 585 (806)
... |-..|-.++. ++-.... ++++++.+|..|....
T Consensus 78 ~~ev~~~~fl~~l~~l~~----------~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 78 HREVASKEFLDELVKLIK----------SKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHTSHHHHHHHHHHHH----------HTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHc----------cCCCCchhHHHHHHHHHHHHHHHHH
Confidence 333 3333333321 1112233 8999999999998765
No 148
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=81.06 E-value=3.9 Score=41.72 Aligned_cols=85 Identities=14% Similarity=0.181 Sum_probs=50.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhcc-CCCe---eEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeC---C
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGR-YGPL---ASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQ---S 267 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~-fG~I---~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~---G 267 (806)
.+.|.|.+|||++|++++...++. ++.- ..+.-..+.. ........-|+|.|.+.+++..-+..++|..+. |
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~-~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKK-SFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-S-SSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCc-cCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 568999999999999999987776 6655 3333111111 111122356899999999999999999998764 2
Q ss_pred --eeEEEEeccCCCC
Q psy17497 268 --YEMKLGWGKSVPI 280 (806)
Q Consensus 268 --r~LrV~~ak~~~~ 280 (806)
....|.+|-...+
T Consensus 86 ~~~~~~VE~Apyqk~ 100 (176)
T PF03467_consen 86 NEYPAVVEFAPYQKV 100 (176)
T ss_dssp -EEEEEEEE-SS---
T ss_pred CCcceeEEEcchhcc
Confidence 3445666554433
No 149
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=80.97 E-value=7.3 Score=33.81 Aligned_cols=67 Identities=19% Similarity=0.375 Sum_probs=40.0
Q ss_pred EEEEc-CCCCCCcHHHHHHHhccCCC-----eeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 197 NLYLG-NLNPKITEQQLMEIFGRYGP-----LASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 197 tLfVg-NLp~~vte~~L~~~F~~fG~-----I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
+|||. +--..++..+|..++...+. |-.|.|. ..|+||+-.. +.|..++..|++..+.|+.|
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-----------~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v 69 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF-----------DNFSFVEVPE-EVAEKVLEALNGKKIKGKKV 69 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE------------SS-EEEEE-T-T-HHHHHHHHTT--SSS---
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe-----------eeEEEEEECH-HHHHHHHHHhcCCCCCCeeE
Confidence 45552 11256788888888876655 5577776 4689999875 57899999999999999999
Q ss_pred EEEec
Q psy17497 271 KLGWG 275 (806)
Q Consensus 271 rV~~a 275 (806)
+|..|
T Consensus 70 ~ve~A 74 (74)
T PF03880_consen 70 RVERA 74 (74)
T ss_dssp -EEE-
T ss_pred EEEEC
Confidence 99754
No 150
>KOG2253|consensus
Probab=79.92 E-value=1.5 Score=52.28 Aligned_cols=75 Identities=17% Similarity=0.258 Sum_probs=64.0
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCC
Q psy17497 188 FDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQS 267 (806)
Q Consensus 188 ~d~~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~G 267 (806)
+...-|..-++||||+...|..+.++.+...||-|.++++. -|||..|....-..+|+..+.-..++|
T Consensus 33 ~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~------------~fgf~~f~~~~~~~ra~r~~t~~~~~~ 100 (668)
T KOG2253|consen 33 VFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD------------KFGFCEFLKHIGDLRASRLLTELNIDD 100 (668)
T ss_pred cccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh------------hhcccchhhHHHHHHHHHHhcccCCCc
Confidence 33445667789999999999999999999999999887766 299999999999999999998888888
Q ss_pred eeEEEEe
Q psy17497 268 YEMKLGW 274 (806)
Q Consensus 268 r~LrV~~ 274 (806)
..+.+.-
T Consensus 101 ~kl~~~~ 107 (668)
T KOG2253|consen 101 QKLIENV 107 (668)
T ss_pred chhhccc
Confidence 7776654
No 151
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=78.00 E-value=10 Score=36.14 Aligned_cols=107 Identities=17% Similarity=0.238 Sum_probs=69.9
Q ss_pred HHHHHhhcC------cchHhHHHHHHHHhhcccchHHHHHHHHHHh-hcccccchhhhhhhhhhhhhhhhcccCCCChhh
Q psy17497 466 LEDFLRNLT------PERVKVAEAMVFCMEHSDAAEEICECIMESL-SNESTALHKKIGRLYLVSDILHNCGIKISNASF 538 (806)
Q Consensus 466 Le~lL~~Lt------~tr~sI~~~m~w~l~ha~~A~eIvd~i~~sl-~~~~t~~~kKLa~LYLinDILhNs~~kv~na~~ 538 (806)
++.+++.-| ++..-..+....+.++ .....|+++|.+.| .........++--|.|+.-+|.|+.. .
T Consensus 4 ~e~~v~eAT~~d~~gp~~~~l~eIa~~t~~~-~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~------~ 76 (125)
T PF01417_consen 4 LELKVREATSNDPWGPPGKLLAEIAQLTYNS-KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSE------R 76 (125)
T ss_dssp HHHHHHHHTSSSSSS--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-H------H
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCH------H
Confidence 445555544 3444555666666666 67889999999999 44455568889999999999999865 4
Q ss_pred HHHHHHHHHHHHHHHHHHh-hhhhhhhhhhHHHHHHHHHHHhh
Q psy17497 539 YRRGFESRLFQIFTEMHIT-YVNLESRLKAEGLRTRVMQVFRA 580 (806)
Q Consensus 539 yr~~fe~~Lp~IF~~l~~~-y~~~~gr~~ae~~k~kV~~VL~i 580 (806)
|...|...+..|.. |... |-.-.|.-....++.+...|+.+
T Consensus 77 ~~~~~~~~~~~I~~-l~~f~~~d~~g~d~~~~VR~~A~~i~~l 118 (125)
T PF01417_consen 77 FVDELRDHIDIIRE-LQDFQYVDPKGKDQGQNVREKAKEILEL 118 (125)
T ss_dssp HHHHHHHTHHHHHG-GGG---BBTTSTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-cceeeccCCCCccHHHHHHHHHHHHHHH
Confidence 77777766665543 3222 21113555556688888888865
No 152
>KOG1365|consensus
Probab=77.56 E-value=12 Score=42.32 Aligned_cols=70 Identities=19% Similarity=0.262 Sum_probs=50.3
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccC----CCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCee
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRY----GPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYE 269 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~f----G~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~ 269 (806)
.-.|-+.+||+++++.++..+|..- |....|-++ ....|+..|=|||.|...++|+.|+.. +...|+.|-
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV----~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRY 234 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFV----TRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRY 234 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEE----ECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHH
Confidence 3457788999999999999999732 234455444 123478889999999999999999963 333344343
No 153
>KOG4307|consensus
Probab=77.07 E-value=1.7 Score=51.94 Aligned_cols=77 Identities=14% Similarity=0.040 Sum_probs=62.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeE-EEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLAS-IKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~s-VkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
-+..|||-.||..+++..+..+|...-.|.. |.|-+ .-+++.++.|||.|...+.+..|...-..++++.+.|+|
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~----~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv 508 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTR----LPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRV 508 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEecc----CCcccccchhhheeccccccchhhhcccccccCceEEEe
Confidence 3567999999999999999999987666666 65542 335677899999999988888888766667778888999
Q ss_pred Ee
Q psy17497 273 GW 274 (806)
Q Consensus 273 ~~ 274 (806)
.-
T Consensus 509 ~s 510 (944)
T KOG4307|consen 509 DS 510 (944)
T ss_pred ec
Confidence 73
No 154
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=76.36 E-value=13 Score=35.86 Aligned_cols=76 Identities=17% Similarity=0.351 Sum_probs=52.9
Q ss_pred ccchHHHHHHHHHHhhcccccchhhhhhhhhhhhhhhhcccCCCChhhHHHHHHH-----HHHHHHHHHHHhhhhhhhh-
Q psy17497 491 SDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASFYRRGFES-----RLFQIFTEMHITYVNLESR- 564 (806)
Q Consensus 491 a~~A~eIvd~i~~sl~~~~t~~~kKLa~LYLinDILhNs~~kv~na~~yr~~fe~-----~Lp~IF~~l~~~y~~~~gr- 564 (806)
...+.+.+..|.+.|... +....+.-|.|+--++.||... |...|.. .|..++ ..+
T Consensus 32 ~~~~k~a~raL~krl~~~--n~~vql~AL~lLd~~vkNcg~~------f~~~i~s~~fl~~l~~l~----------~~~~ 93 (133)
T cd03561 32 PNGPKEAARAIRKKIKYG--NPHVQLLALTLLELLVKNCGKP------FHLQVADKEFLLELVKIA----------KNSP 93 (133)
T ss_pred CCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhCChH------HHHHHhhHHHHHHHHHHh----------CCCC
Confidence 345889999999999864 3467788899999999999653 3333322 222221 111
Q ss_pred hhhHHHHHHHHHHHhhcccc
Q psy17497 565 LKAEGLRTRVMQVFRAWEDW 584 (806)
Q Consensus 565 ~~ae~~k~kV~~VL~iWe~~ 584 (806)
.....+++++..+|..|...
T Consensus 94 ~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 94 KYDPKVREKALELILAWSES 113 (133)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 23578999999999999763
No 155
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=76.18 E-value=19 Score=34.08 Aligned_cols=79 Identities=18% Similarity=0.203 Sum_probs=51.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCC-CeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeC---CeeE
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYG-PLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQ---SYEM 270 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG-~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~---Gr~L 270 (806)
++.+.+...|..++-++|..+.+.+- .|..++|+ ++. ..++-.+.+.|.+..+|..-...+||+.+. .-..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~rii---rd~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~C 87 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRII---RDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETC 87 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEe---eCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCcee
Confidence 34444444445555556655555554 47788888 332 246678899999999999999999999765 3445
Q ss_pred EEEeccCC
Q psy17497 271 KLGWGKSV 278 (806)
Q Consensus 271 rV~~ak~~ 278 (806)
+|-|-+.+
T Consensus 88 hvvfV~~V 95 (110)
T PF07576_consen 88 HVVFVKSV 95 (110)
T ss_pred EEEEEEEE
Confidence 55554443
No 156
>KOG0965|consensus
Probab=76.15 E-value=0.81 Score=54.86 Aligned_cols=61 Identities=16% Similarity=0.102 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHHHHHHHHhcChHHHHHHHhhcCCCCCcccccCCCCCCCchhHHHHHHHhc
Q psy17497 348 PTDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSILQ 408 (806)
Q Consensus 348 P~d~~~~~~Idk~a~~V~~~G~~FE~~l~~re~~np~F~FL~d~~sp~h~YYrwrl~s~~~ 408 (806)
|.-...+.+|+.++.++.-.|++.+-++|+--+.||.|.||.+-++-.+.||+-+|.++..
T Consensus 527 ~~~a~~rvv~~i~~~~~~~~~~~L~~~~~tl~k~~pa~~Flsd~ns~e~~yyk~k~aeI~~ 587 (988)
T KOG0965|consen 527 PQRADHRVVGTIDQLVKRVIEGSLSPKERTLLKEDPAYWFLSDENSLEYKYYKLKLAEIQR 587 (988)
T ss_pred ccCCCceeeeehhhhHHhhccccccHHHHHHhhhchhhhhhcchhhhHHHHhccccHHHHH
Confidence 3444566777888889999999999999999999999999999999999999999988753
No 157
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=73.37 E-value=17 Score=35.15 Aligned_cols=105 Identities=18% Similarity=0.370 Sum_probs=60.8
Q ss_pred HHHHhhcCc---chHhHHHHHHHH---hhcccchHHHHHHHHHHhhcccccchhhhhhhhhhhhhhhhcccCCCChhhHH
Q psy17497 467 EDFLRNLTP---ERVKVAEAMVFC---MEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASFYR 540 (806)
Q Consensus 467 e~lL~~Lt~---tr~sI~~~m~w~---l~ha~~A~eIvd~i~~sl~~~~t~~~kKLa~LYLinDILhNs~~kv~na~~yr 540 (806)
+.+|...|. ...+....+.+| -.....+.+.+.+|.+.|.... ....+.-|-|+--++.||...+. ...-.
T Consensus 2 ~~~i~kATs~~l~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n--~~v~l~AL~lLe~~vkNcg~~f~-~ev~s 78 (133)
T smart00288 2 ERLIDKATSPSLLEEDWELILEICDLINSTPDGPKDAVRLLKKRLNNKN--PHVALLALTLLDACVKNCGSKFH-LEVAS 78 (133)
T ss_pred hhHHHHHcCcCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHCCHHHH-HHHHh
Confidence 344555442 233334444443 2333458899999999998643 46678889999999999965311 10112
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhcccc
Q psy17497 541 RGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDW 584 (806)
Q Consensus 541 ~~fe~~Lp~IF~~l~~~y~~~~gr~~ae~~k~kV~~VL~iWe~~ 584 (806)
..|-..|..+ +...| ....+++++..++..|...
T Consensus 79 ~~fl~~L~~l---~~~~~-------~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 79 KEFLNELVKL---IKPKY-------PLPLVKKRILELIQEWADA 112 (133)
T ss_pred HHHHHHHHHH---HcCCC-------CcHHHHHHHHHHHHHHHHH
Confidence 2232233333 22221 1233899999999999763
No 158
>KOG4660|consensus
Probab=72.46 E-value=5.5 Score=46.77 Aligned_cols=82 Identities=17% Similarity=0.171 Sum_probs=58.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhc-cCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeC----Cee
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFG-RYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQ----SYE 269 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~-~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~----Gr~ 269 (806)
.+|+-|.|++...|-..|.+.-. ..|.-.-+.+. .|-.+..+-|||||.|.+..++..+.+++||+.|. .+.
T Consensus 388 rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLP---iDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Ki 464 (549)
T KOG4660|consen 388 RTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLP---IDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKI 464 (549)
T ss_pred hhhhHhhccCchhhHHhhhhhhccccCccceEEec---cccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceee
Confidence 46677777777776666655532 23443334443 45556677899999999999999999999999765 466
Q ss_pred EEEEeccCCC
Q psy17497 270 MKLGWGKSVP 279 (806)
Q Consensus 270 LrV~~ak~~~ 279 (806)
..|.||+-..
T Consensus 465 a~itYArIQG 474 (549)
T KOG4660|consen 465 ASITYARIQG 474 (549)
T ss_pred eeeehhhhhc
Confidence 7888887654
No 159
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=69.75 E-value=18 Score=30.87 Aligned_cols=53 Identities=21% Similarity=0.391 Sum_probs=41.0
Q ss_pred CEEEEcCCCCCCcHHHHHHHhccC----CCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHh
Q psy17497 196 TNLYLGNLNPKITEQQLMEIFGRY----GPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYL 260 (806)
Q Consensus 196 ttLfVgNLp~~vte~~L~~~F~~f----G~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~L 260 (806)
..|+|.++. .++.++++.+|..| + ...|..+ .| ..|-|.|.+...|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWI---dD-------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWI---DD-------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEe---cC-------CcEEEEECCHHHHHHHHHcC
Confidence 568999985 47778999999988 4 4567666 22 24779999999999999765
No 160
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=68.73 E-value=24 Score=34.79 Aligned_cols=93 Identities=17% Similarity=0.324 Sum_probs=58.2
Q ss_pred HhHHHHHHHHh---hcccchHHHHHHHHHHhhcccccchhhhhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHH
Q psy17497 478 VKVAEAMVFCM---EHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASFYRRGFESRLFQIFTEM 554 (806)
Q Consensus 478 ~sI~~~m~w~l---~ha~~A~eIvd~i~~sl~~~~t~~~kKLa~LYLinDILhNs~~kv~na~~yr~~fe~~Lp~IF~~l 554 (806)
.+.+-.|..|- .....+.+.+.+|.+.|.... ....+.-|-|+--++.||... |...+.+. +++
T Consensus 16 ~dw~~il~icD~I~~~~~~~k~a~ral~KRl~~~n--~~v~l~AL~LLe~~vkNCG~~------fh~evask-----~Fl 82 (144)
T cd03568 16 ENWGLILDVCDKVKSDENGAKDCLKAIMKRLNHKD--PNVQLRALTLLDACAENCGKR------FHQEVASR-----DFT 82 (144)
T ss_pred cCHHHHHHHHHHHhcCCccHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHCCHH------HHHHHhhH-----HHH
Confidence 44444444442 334568899999999987643 477788899999999999653 33332221 111
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHhhcccc
Q psy17497 555 HITYVNLESRLKAEGLRTRVMQVFRAWEDW 584 (806)
Q Consensus 555 ~~~y~~~~gr~~ae~~k~kV~~VL~iWe~~ 584 (806)
....+-+..+ ....+++++..+|+.|..-
T Consensus 83 ~eL~kl~~~~-~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 83 QELKKLINDR-VHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHhccc-CCHHHHHHHHHHHHHHHHH
Confidence 1111112222 4578999999999999743
No 161
>KOG2318|consensus
Probab=66.45 E-value=14 Score=43.80 Aligned_cols=81 Identities=17% Similarity=0.210 Sum_probs=58.9
Q ss_pred CCCCEEEEcCCCCC-CcHHHHHHHhccC----CCeeEEEEeCCCCcc-------ccC-----------------------
Q psy17497 193 PCTTNLYLGNLNPK-ITEQQLMEIFGRY----GPLASIKIMWPRSDE-------EKA----------------------- 237 (806)
Q Consensus 193 p~~ttLfVgNLp~~-vte~~L~~~F~~f----G~I~sVkI~~Pr~d~-------~tg----------------------- 237 (806)
..+++|-|.||.+. +...+|..+|..| |.|.+|.|.+..-.. ..|
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 34778999999964 7788999888765 579999997411100 011
Q ss_pred --------------CcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 238 --------------RGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 238 --------------~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
...-||.|+|.+...|......++|..+...-+++.
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~D 301 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLD 301 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceee
Confidence 123479999999999999999999999875444444
No 162
>KOG4210|consensus
Probab=66.27 E-value=3.5 Score=45.22 Aligned_cols=83 Identities=14% Similarity=0.107 Sum_probs=66.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
...+++|+|++...+.+.+...+|..+|.+...... .......+++++.|.|...+.+..|+.....+.+.++.+..
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S---~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~ 162 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSS---SLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEK 162 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhh---hhccccccccceeeccccHHHHHHHHHhhhccccccccccC
Confidence 347889999999999999999999999988777665 45566788999999999999999999755545677777666
Q ss_pred EeccCC
Q psy17497 273 GWGKSV 278 (806)
Q Consensus 273 ~~ak~~ 278 (806)
......
T Consensus 163 dl~~~~ 168 (285)
T KOG4210|consen 163 DLNTRR 168 (285)
T ss_pred cccccc
Confidence 555443
No 163
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=63.90 E-value=45 Score=32.82 Aligned_cols=109 Identities=15% Similarity=0.362 Sum_probs=66.0
Q ss_pred HHHHHhhcC---cchHhHHHHHHHHh---hcccchHHHHHHHHHHhhcccccchhhhhhhhhhhhhhhhcccCCCChhhH
Q psy17497 466 LEDFLRNLT---PERVKVAEAMVFCM---EHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASFY 539 (806)
Q Consensus 466 Le~lL~~Lt---~tr~sI~~~m~w~l---~ha~~A~eIvd~i~~sl~~~~t~~~kKLa~LYLinDILhNs~~kv~na~~y 539 (806)
|+.++...| .+-.+.+-.+..|- .....+.+.+..|.+.|...+. ...|--|-|+-=++.||...+ +...-
T Consensus 2 ~~~~iekAT~~~l~~~dw~~ileicD~In~~~~~~k~a~rai~krl~~~n~--~v~l~AL~LLe~~vkNCG~~f-h~eva 78 (139)
T cd03567 2 LEAWLNKATNPSNREEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQE--KEALQALTVLEACMKNCGERF-HSEVG 78 (139)
T ss_pred HHHHHHHHcCccCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHcCHHH-HHHHH
Confidence 445555555 23445555555542 2333477888899988875443 566888899999999996541 11112
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhccc
Q psy17497 540 RRGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWED 583 (806)
Q Consensus 540 r~~fe~~Lp~IF~~l~~~y~~~~gr~~ae~~k~kV~~VL~iWe~ 583 (806)
...|-.-|..++. ..| .|+.....+|++|..+|+.|..
T Consensus 79 s~~Fl~el~kl~~---~k~---~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 79 KFRFLNELIKLVS---PKY---LGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred hHHHHHHHHHHhc---ccc---CCCCCCHHHHHHHHHHHHHHHH
Confidence 2333334444431 111 1334468899999999999986
No 164
>KOG4454|consensus
Probab=61.06 E-value=3.7 Score=43.09 Aligned_cols=71 Identities=32% Similarity=0.567 Sum_probs=56.7
Q ss_pred CCCCCCEEEEcC----CCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCcee
Q psy17497 191 GDPCTTNLYLGN----LNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDV 265 (806)
Q Consensus 191 ~dp~~ttLfVgN----Lp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l 265 (806)
+++...+++.|| |...++++.+...|+.-|++..+++- ++.. |+++.++||++......-.++...++..+
T Consensus 76 ~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~---~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 76 EDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIP---TDND-GRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred cchhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccc---cccc-CCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 455567788888 88889999999999999999999986 3333 88999999999887777777766655443
No 165
>KOG4019|consensus
Probab=57.45 E-value=16 Score=37.57 Aligned_cols=77 Identities=14% Similarity=0.173 Sum_probs=55.5
Q ss_pred CCEEEEcCCCCCCcH-----HHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCe-
Q psy17497 195 TTNLYLGNLNPKITE-----QQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSY- 268 (806)
Q Consensus 195 ~ttLfVgNLp~~vte-----~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr- 268 (806)
.+++.+.++...+-. .....+|.+|-......++ ++.+.--|.|.+...|.+|...+++..+.|.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l---------rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~ 80 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL---------RSFRRVRINFSNPEAAADARIKLHSTSFNGKN 80 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH---------HhhceeEEeccChhHHHHHHHHhhhcccCCCc
Confidence 466788888765432 2344667777665555555 3344456799999999999999999999987
Q ss_pred eEEEEeccCCCC
Q psy17497 269 EMKLGWGKSVPI 280 (806)
Q Consensus 269 ~LrV~~ak~~~~ 280 (806)
.++.-|+...-.
T Consensus 81 ~~k~yfaQ~~~~ 92 (193)
T KOG4019|consen 81 ELKLYFAQPGHP 92 (193)
T ss_pred eEEEEEccCCCc
Confidence 889888876543
No 166
>KOG1924|consensus
Probab=51.17 E-value=28 Score=42.77 Aligned_cols=81 Identities=14% Similarity=0.192 Sum_probs=44.0
Q ss_pred HHHHHHhhcCcchHhHHHHHHHHhhcccc--h---HHHHHHHHHHhhcccc-------------------cchhhhhhhh
Q psy17497 465 RLEDFLRNLTPERVKVAEAMVFCMEHSDA--A---EEICECIMESLSNEST-------------------ALHKKIGRLY 520 (806)
Q Consensus 465 ~Le~lL~~Lt~tr~sI~~~m~w~l~ha~~--A---~eIvd~i~~sl~~~~t-------------------~~~kKLa~LY 520 (806)
+|++++.+| +-+|-.+|.=|-+-..+ - -++|-.+-+|+...+. ...+|-.+|+
T Consensus 789 ~fse~vnni---KP~i~avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSrNa~afgF~is~L~kL~dTKsaDqk~TLLH 865 (1102)
T KOG1924|consen 789 TFSEQVNNI---KPDIVAVTAACEELRKSESFSKLLELVLLVGNYMNSGSRNAQAFGFNISFLCKLRDTKSADQKTTLLH 865 (1102)
T ss_pred hHHHHHhhc---ChHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccccccchhhccchHHHHhhccccccchhhHHHH
Confidence 355555554 56777888878665543 1 1444444444421110 1245655665
Q ss_pred hhhhh--------------hhhcc-cCCCChhhHHHHHHHHHH
Q psy17497 521 LVSDI--------------LHNCG-IKISNASFYRRGFESRLF 548 (806)
Q Consensus 521 LinDI--------------LhNs~-~kv~na~~yr~~fe~~Lp 548 (806)
.+-|| ||||- +.+-|+..+++.+...--
T Consensus 866 fLae~~e~kypd~l~F~ddl~hv~kaSrvnad~ikK~~~~m~~ 908 (1102)
T KOG1924|consen 866 FLAEICEEKYPDILKFPDDLEHVEKASRVNADEIKKNLQQMEN 908 (1102)
T ss_pred HHHHHHHHhChhhhcchhhHHHHHhhccccHHHHHHHHHHHHH
Confidence 55444 56663 455578778877765543
No 167
>KOG2891|consensus
Probab=48.42 E-value=5.2 Score=43.14 Aligned_cols=69 Identities=25% Similarity=0.370 Sum_probs=45.8
Q ss_pred CEEEEcCCCCC------------CcHHHHHHHhccCCCeeEEEEe--CCCCccccCCcccEEE--------------EEe
Q psy17497 196 TNLYLGNLNPK------------ITEQQLMEIFGRYGPLASIKIM--WPRSDEEKARGRNCGF--------------VAF 247 (806)
Q Consensus 196 ttLfVgNLp~~------------vte~~L~~~F~~fG~I~sVkI~--~Pr~d~~tg~~rg~aF--------------V~F 247 (806)
-|||+.+||-. -+++.|+..|..||.|..|.|. -|.+..-+|+..|.-| |.|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 46888888742 4678899999999999888763 3545555666544322 444
Q ss_pred cChHHHHHHHHHhCCce
Q psy17497 248 MNRKDGERALKYLNGKD 264 (806)
Q Consensus 248 ~~~~dAe~Ai~~LnG~~ 264 (806)
+....-..||.+|.|..
T Consensus 230 meykgfa~amdalr~~k 246 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMK 246 (445)
T ss_pred HHHHhHHHHHHHHhcch
Confidence 44555566777776654
No 168
>KOG1924|consensus
Probab=47.88 E-value=29 Score=42.67 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=7.6
Q ss_pred HHHHHHHHhhcCcchHhHH
Q psy17497 463 RHRLEDFLRNLTPERVKVA 481 (806)
Q Consensus 463 r~~Le~lL~~Lt~tr~sI~ 481 (806)
...|--+|-++...-+.|.
T Consensus 701 aQnLsIflgS~rmpyeeik 719 (1102)
T KOG1924|consen 701 AQNLSIFLGSFRMPYEEIK 719 (1102)
T ss_pred HHHHHHHHhhccCCHHHHH
Confidence 3334444444433333333
No 169
>KOG2591|consensus
Probab=47.48 E-value=33 Score=40.63 Aligned_cols=63 Identities=14% Similarity=0.223 Sum_probs=49.6
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHhc--cCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhC
Q psy17497 189 DSGDPCTTNLYLGNLNPKITEQQLMEIFG--RYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLN 261 (806)
Q Consensus 189 d~~dp~~ttLfVgNLp~~vte~~L~~~F~--~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~Ln 261 (806)
.......|.|.+.-||..+..++++.+|. .|..+.+|.+- .+ .--||+|++..||+.|...|.
T Consensus 169 Vrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa---------~N-~nWyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 169 VRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFA---------HN-DNWYITFESDTDAQQAYKYLR 233 (684)
T ss_pred cccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeee---------ec-CceEEEeecchhHHHHHHHHH
Confidence 33445567899999999999999999995 47788888765 11 236899999999999987653
No 170
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=46.94 E-value=77 Score=31.16 Aligned_cols=106 Identities=16% Similarity=0.347 Sum_probs=64.0
Q ss_pred HHHHHHhhcCc---chHhHHHHHHHHh---hcccchHHHHHHHHHHhhcccccchhhhhhhhhhhhhhhhcccCCCChhh
Q psy17497 465 RLEDFLRNLTP---ERVKVAEAMVFCM---EHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASF 538 (806)
Q Consensus 465 ~Le~lL~~Lt~---tr~sI~~~m~w~l---~ha~~A~eIvd~i~~sl~~~~t~~~kKLa~LYLinDILhNs~~kv~na~~ 538 (806)
.|+.++...|. ...+.+-.+..|- .....+.+.+.+|.+.|...+ ....+.-|-|+.-++.||..+.. ...
T Consensus 4 ~~~~~I~kATs~~l~~~dw~~ileicD~In~~~~~~k~a~ral~krl~~~n--~~vql~AL~LLe~~vkNCG~~fh-~ev 80 (142)
T cd03569 4 EFDELIEKATSELLGEPDLASILEICDMIRSKDVQPKYAMRALKKRLLSKN--PNVQLYALLLLESCVKNCGTHFH-DEV 80 (142)
T ss_pred hHHHHHHHHcCcccCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHHCCHHHH-HHH
Confidence 36666666652 3344444444432 223457899999999997643 36667779999999999965311 111
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhcccc
Q psy17497 539 YRRGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDW 584 (806)
Q Consensus 539 yr~~fe~~Lp~IF~~l~~~y~~~~gr~~ae~~k~kV~~VL~iWe~~ 584 (806)
--+.|-..|..++.. .....+++++..+|..|...
T Consensus 81 as~~fl~~l~~l~~~-----------~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 81 ASREFMDELKDLIKT-----------TKNEEVRQKILELIQAWALA 115 (142)
T ss_pred hhHHHHHHHHHHHcc-----------cCCHHHHHHHHHHHHHHHHH
Confidence 122333333333221 12477899999999999764
No 171
>KOG0804|consensus
Probab=46.84 E-value=46 Score=38.57 Aligned_cols=67 Identities=19% Similarity=0.353 Sum_probs=56.5
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCC-CeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeC
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYG-PLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQ 266 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG-~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~ 266 (806)
++.|+|-.+|..++-.+|..|...|- .|.+++|+ +|. -.++-...+.|.+..+|..-...+||+.+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~iriv---Rd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIV---RDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEe---ecC--CCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 78899999999999999999997654 58899999 332 234567899999999999999999999765
No 172
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=40.73 E-value=1.3e+02 Score=25.93 Aligned_cols=56 Identities=18% Similarity=0.318 Sum_probs=43.0
Q ss_pred CCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 205 PKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 205 ~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
..++-.+++..+..|+- ..|..- ..| =||.|.+..+|++|....+|..+.+..|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~-~~I~~d----------~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW-DRIRDD----------RTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCc-ceEEec----------CCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 35677899999999963 343321 123 379999999999999999999998888765
No 173
>KOG2193|consensus
Probab=38.22 E-value=2.4 Score=48.01 Aligned_cols=75 Identities=19% Similarity=0.404 Sum_probs=62.3
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEe
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGW 274 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~ 274 (806)
++.+-|.|+|+...++.|..+...||.+..|..+. ++.++ ..--|+|...+.+..||..|||..+....++|+|
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvn--t~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVN--TDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhc--cchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 34588999999999999999999999999886542 44433 2334788999999999999999999999999998
Q ss_pred c
Q psy17497 275 G 275 (806)
Q Consensus 275 a 275 (806)
-
T Consensus 154 i 154 (584)
T KOG2193|consen 154 I 154 (584)
T ss_pred C
Confidence 4
No 174
>KOG4676|consensus
Probab=37.36 E-value=7.6 Score=43.87 Aligned_cols=64 Identities=14% Similarity=0.157 Sum_probs=50.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeC
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQ 266 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~ 266 (806)
..+++|++|+..+...++.++|..+|.|...++- .|-...+|-|.|........|+. ++|..+.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a-------sk~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTA-------SKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhh-------ccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 3789999999999999999999999998776654 23344566699999888888886 5666644
No 175
>KOG4410|consensus
Probab=37.35 E-value=2.5e+02 Score=30.96 Aligned_cols=50 Identities=24% Similarity=0.309 Sum_probs=38.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecCh
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNR 250 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~ 250 (806)
+-.+-|||+||+..+.-.+|+..+.+-|.+ -..|.| ..++|-||+.|-++
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~isw-------kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISW-------KGHFGKCFLHFGNR 377 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCC-ceeEee-------ecCCcceeEecCCc
Confidence 445779999999999999999999877643 344555 24567799999875
No 176
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=30.73 E-value=61 Score=32.76 Aligned_cols=38 Identities=29% Similarity=0.436 Sum_probs=33.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEe
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIM 228 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~ 228 (806)
.....+.+++++++..++...+...|..+|.+..+.+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeecc
Confidence 34557889999999999999999999999999777765
No 177
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=28.01 E-value=2.3e+02 Score=27.80 Aligned_cols=84 Identities=14% Similarity=0.326 Sum_probs=49.0
Q ss_pred cccchHHHHHHHHHHhhcccccchhhhhhhhhhhhhhhhcccCCCChhhHHHHHHHH-HHHHHHHHHHhhhhhhhhhhhH
Q psy17497 490 HSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASFYRRGFESR-LFQIFTEMHITYVNLESRLKAE 568 (806)
Q Consensus 490 ha~~A~eIvd~i~~sl~~~~t~~~kKLa~LYLinDILhNs~~kv~na~~yr~~fe~~-Lp~IF~~l~~~y~~~~gr~~ae 568 (806)
....+.+.+.+|.+.|... .....-+--|-|+-=++.||...+. ...-.+.|-.. |..++. ..+ ....
T Consensus 32 ~~~~~k~a~ralkkRl~~~-~n~~v~l~aL~LLe~~vkNCG~~fh-~eiask~Fl~e~L~~~i~---~~~------~~~~ 100 (141)
T cd03565 32 TEDGPKDAVRALKKRLNGN-KNHKEVMLTLTVLETCVKNCGHRFH-VLVAKKDFIKDVLVKLIN---PKN------NPPT 100 (141)
T ss_pred CCCcHHHHHHHHHHHHccC-CCHHHHHHHHHHHHHHHHHccHHHH-HHHHHHHhhhHHHHHHHc---ccC------CCcH
Confidence 3345788899999888532 2223345458999999999965311 10111233322 333321 110 0135
Q ss_pred HHHHHHHHHHhhcccc
Q psy17497 569 GLRTRVMQVFRAWEDW 584 (806)
Q Consensus 569 ~~k~kV~~VL~iWe~~ 584 (806)
..+++|..+|+-|...
T Consensus 101 ~Vk~kil~li~~W~~~ 116 (141)
T cd03565 101 IVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7899999999999764
No 178
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=27.24 E-value=1.8e+02 Score=35.14 Aligned_cols=52 Identities=8% Similarity=0.245 Sum_probs=35.4
Q ss_pred CCChHHHHHHHHHHhhcC-----cchHhHHHHHHHHhhcccchHHHHHHHHHHhhcc
Q psy17497 457 SLSNSQRHRLEDFLRNLT-----PERVKVAEAMVFCMEHSDAAEEICECIMESLSNE 508 (806)
Q Consensus 457 ~L~~~~r~~Le~lL~~Lt-----~tr~sI~~~m~w~l~ha~~A~eIvd~i~~sl~~~ 508 (806)
..+.++...|+.+|.-+. -++..|..+..+|-++.++..-|+|+|++-|...
T Consensus 52 ~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~td 108 (556)
T PF05918_consen 52 HFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTD 108 (556)
T ss_dssp C-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT--
T ss_pred hChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcc
Confidence 455666677777776654 4778899999999999999999999999977643
No 179
>PF14733 ACDC: AP2-coincident C-terminal
Probab=24.92 E-value=71 Score=28.89 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=17.5
Q ss_pred hhhhhhhhhhhhhhhcccCC
Q psy17497 514 KKIGRLYLVSDILHNCGIKI 533 (806)
Q Consensus 514 kKLa~LYLinDILhNs~~kv 533 (806)
.|.+++|+++|+.+||....
T Consensus 8 ~K~Ai~~iL~DL~~~c~~~~ 27 (91)
T PF14733_consen 8 CKEAILLILSDLKDNCLPNL 27 (91)
T ss_pred HHHHHHHHHHHHHHhhchhh
Confidence 58999999999999997653
No 180
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=23.53 E-value=3.8e+02 Score=27.49 Aligned_cols=111 Identities=14% Similarity=0.178 Sum_probs=56.0
Q ss_pred chHhHHHHHHHHhhc--ccchHHHHHHHH---HHhhcccccchhhh--hhhhhhhhhhhhcccCCCChhhHHHHHHHHHH
Q psy17497 476 ERVKVAEAMVFCMEH--SDAAEEICECIM---ESLSNESTALHKKI--GRLYLVSDILHNCGIKISNASFYRRGFESRLF 548 (806)
Q Consensus 476 tr~sI~~~m~w~l~h--a~~A~eIvd~i~---~sl~~~~t~~~kKL--a~LYLinDILhNs~~kv~na~~yr~~fe~~Lp 548 (806)
..+.|.....++..| ......++.++. ..+...-.....+| .-+.++.++..+... .|...++..||
T Consensus 24 r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~------~~~~~~~~~l~ 97 (228)
T PF12348_consen 24 RVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS------HFEPYADILLP 97 (228)
T ss_dssp HHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG------GGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH------hHHHHHHHHHH
Confidence 345677777777777 334455555554 22222222223333 235566777766643 27777888888
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhccccccCCHHH-HHHHHHHHcC
Q psy17497 549 QIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWAVYPKDY-LIKLQNVFLG 601 (806)
Q Consensus 549 ~IF~~l~~~y~~~~gr~~ae~~k~kV~~VL~iWe~~~vfp~~~-l~~L~~~f~g 601 (806)
.++..++.. ...+++.+..+|..+-...-|+..+ +..|...+..
T Consensus 98 ~Ll~~~~~~---------~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~ 142 (228)
T PF12348_consen 98 PLLKKLGDS---------KKFIREAANNALDAIIESCSYSPKILLEILSQGLKS 142 (228)
T ss_dssp HHHHGGG------------HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-
T ss_pred HHHHHHccc---------cHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhC
Confidence 886654443 2346677777776666666555666 5555554443
No 181
>KOG4365|consensus
Probab=20.77 E-value=19 Score=41.44 Aligned_cols=81 Identities=7% Similarity=-0.076 Sum_probs=63.4
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEe
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGW 274 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~ 274 (806)
++..|+..||...++.++..+|.-||-|..+..- .....|-....+||+-.. .+|..+|+.+--..+.|..+++..
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~---~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~ 78 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGS---PYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAV 78 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCC---ccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhc
Confidence 3557888899999999999999999999888765 223445566778888764 577888887777788899999998
Q ss_pred ccCCC
Q psy17497 275 GKSVP 279 (806)
Q Consensus 275 ak~~~ 279 (806)
++...
T Consensus 79 ~~~s~ 83 (572)
T KOG4365|consen 79 SPSSS 83 (572)
T ss_pred Cchhh
Confidence 86554
Done!