Query psy17497
Match_columns 806
No_of_seqs 589 out of 2724
Neff 5.9
Searched_HMMs 29240
Date Sat Aug 17 00:02:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17497.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17497hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2km4_A Regulator of TY1 transp 99.9 7.2E-27 2.5E-31 225.7 12.3 129 463-601 5-133 (142)
2 4fu3_A Regulation of nuclear P 99.9 4.2E-26 1.4E-30 217.9 10.0 128 462-602 5-132 (135)
3 4flb_A Regulation of nuclear P 99.9 1.9E-25 6.6E-30 212.7 10.7 127 460-601 4-130 (132)
4 1x4o_A Splicing factor 4; stru 99.8 3.2E-22 1.1E-26 173.9 5.4 73 341-413 5-77 (78)
5 1ug0_A Splicing factor 4; SURP 99.8 3.3E-22 1.1E-26 177.5 4.0 73 341-413 15-87 (88)
6 1sz9_A PCF11 protein; RNA poly 99.8 1.6E-19 5.4E-24 174.7 13.4 125 461-601 7-137 (144)
7 2e5z_A SFRS8 protein, splicing 99.8 2.9E-19 9.9E-24 158.4 5.8 65 346-413 17-81 (90)
8 2e60_A SFRS8 protein, splicing 99.8 4.9E-19 1.7E-23 160.8 7.1 69 344-413 18-86 (101)
9 2dt6_A Splicing factor 3 subun 99.8 5.5E-19 1.9E-23 148.0 6.3 60 352-412 2-61 (64)
10 4fxv_A ELAV-like protein 1; RN 99.8 2.8E-18 9.6E-23 155.0 10.9 82 193-277 17-98 (99)
11 3d9j_A RNA-binding protein 16; 99.7 1.8E-17 6.2E-22 160.5 10.6 129 462-601 3-137 (145)
12 2dgo_A Cytotoxic granule-assoc 99.7 2E-16 6.8E-21 145.3 14.8 90 191-283 11-100 (115)
13 3s8s_A Histone-lysine N-methyl 99.7 1.1E-16 3.6E-21 147.6 11.4 84 192-278 3-86 (110)
14 2lxi_A RNA-binding protein 10; 99.7 5.5E-17 1.9E-21 144.1 7.7 82 195-279 1-84 (91)
15 2e5h_A Zinc finger CCHC-type a 99.7 3.2E-16 1.1E-20 138.5 12.2 84 190-276 11-94 (94)
16 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.9E-16 6.6E-21 137.7 10.4 83 193-278 4-86 (87)
17 3md1_A Nuclear and cytoplasmic 99.7 2.6E-16 8.9E-21 135.7 10.9 81 195-278 1-81 (83)
18 2lkz_A RNA-binding protein 5; 99.7 1.5E-16 5.2E-21 143.1 9.5 82 193-277 7-94 (95)
19 2cqd_A RNA-binding region cont 99.7 8.3E-16 2.8E-20 141.6 14.5 89 190-282 12-100 (116)
20 3mdf_A Peptidyl-prolyl CIS-tra 99.7 2.5E-16 8.4E-21 136.5 10.2 82 192-276 4-85 (85)
21 2dgs_A DAZ-associated protein 99.7 7.9E-16 2.7E-20 137.6 13.2 84 192-279 7-90 (99)
22 2dnz_A Probable RNA-binding pr 99.7 6.2E-16 2.1E-20 136.9 12.4 85 193-280 3-87 (95)
23 2dnm_A SRP46 splicing factor; 99.7 4.7E-16 1.6E-20 140.1 11.5 86 191-279 9-94 (103)
24 4f25_A Polyadenylate-binding p 99.7 3.4E-16 1.2E-20 144.6 10.8 80 194-278 4-83 (115)
25 2cqb_A Peptidyl-prolyl CIS-tra 99.6 6.1E-16 2.1E-20 138.9 11.7 86 192-280 9-94 (102)
26 2cq0_A Eukaryotic translation 99.6 7.5E-16 2.6E-20 138.7 12.1 85 192-279 12-96 (103)
27 2dgp_A Bruno-like 4, RNA bindi 99.6 6.2E-16 2.1E-20 139.8 11.5 88 189-279 7-97 (106)
28 2cqc_A Arginine/serine-rich sp 99.6 6.8E-16 2.3E-20 136.4 11.5 83 192-277 12-94 (95)
29 1whw_A Hypothetical protein ri 99.6 1E-15 3.5E-20 136.7 12.7 86 192-280 5-90 (99)
30 2x1f_A MRNA 3'-END-processing 99.6 6.6E-16 2.2E-20 137.5 11.0 82 195-279 2-83 (96)
31 2la6_A RNA-binding protein FUS 99.6 6.7E-16 2.3E-20 138.2 11.1 83 191-276 9-99 (99)
32 1x5s_A Cold-inducible RNA-bind 99.6 8.2E-16 2.8E-20 138.1 11.6 86 192-280 9-94 (102)
33 1x5t_A Splicing factor 3B subu 99.6 6.9E-16 2.4E-20 136.9 11.0 84 193-279 3-87 (96)
34 3p5t_L Cleavage and polyadenyl 99.6 1.1E-16 3.8E-21 141.2 5.8 81 196-279 2-84 (90)
35 2cpz_A CUG triplet repeat RNA- 99.6 8.9E-16 3E-20 141.1 12.0 86 191-279 21-106 (115)
36 1p27_B RNA-binding protein 8A; 99.6 5.3E-16 1.8E-20 140.3 10.3 85 192-279 20-104 (106)
37 2cph_A RNA binding motif prote 99.6 1.2E-15 4.1E-20 138.0 12.4 86 191-279 11-98 (107)
38 2cpf_A RNA binding motif prote 99.6 7.6E-16 2.6E-20 137.3 10.6 85 193-280 3-90 (98)
39 2do4_A Squamous cell carcinoma 99.6 1.5E-15 5E-20 136.1 12.5 85 191-279 13-97 (100)
40 2div_A TRNA selenocysteine ass 99.6 6.3E-16 2.2E-20 138.1 10.0 86 192-280 6-96 (99)
41 1x5u_A Splicing factor 3B subu 99.6 1.3E-15 4.3E-20 137.6 12.0 86 192-280 12-97 (105)
42 1x4h_A RNA-binding protein 28; 99.6 1.6E-15 5.3E-20 138.1 12.7 85 192-279 12-102 (111)
43 2jrs_A RNA-binding protein 39; 99.6 7E-16 2.4E-20 141.3 10.0 87 189-278 20-106 (108)
44 2do0_A HnRNP M, heterogeneous 99.6 3.8E-15 1.3E-19 136.4 14.9 83 192-278 12-94 (114)
45 2khc_A Testis-specific RNP-typ 99.6 1.1E-15 3.6E-20 141.1 11.0 83 191-276 36-118 (118)
46 3ns6_A Eukaryotic translation 99.6 2.3E-16 7.9E-21 142.2 6.3 81 194-277 5-92 (100)
47 1oo0_B CG8781-PA, drosophila Y 99.6 1.2E-15 4.1E-20 139.0 11.0 85 192-279 23-107 (110)
48 2fy1_A RNA-binding motif prote 99.6 2.2E-15 7.7E-20 139.6 12.9 84 193-280 5-88 (116)
49 2d9p_A Polyadenylate-binding p 99.6 2E-15 6.7E-20 136.0 11.9 85 191-280 11-95 (103)
50 2ywk_A Putative RNA-binding pr 99.6 1.4E-15 4.8E-20 134.6 10.4 83 191-277 12-94 (95)
51 2cq3_A RNA-binding protein 9; 99.6 4.8E-15 1.7E-19 133.4 14.0 85 191-280 11-95 (103)
52 2dnh_A Bruno-like 5, RNA bindi 99.6 2.7E-15 9.4E-20 135.3 12.3 84 192-279 12-98 (105)
53 1sjq_A Polypyrimidine tract-bi 99.6 1.3E-15 4.3E-20 139.8 10.1 81 192-281 13-95 (105)
54 2dgv_A HnRNP M, heterogeneous 99.6 1.8E-15 6.2E-20 133.1 10.6 84 192-280 5-88 (92)
55 2dgx_A KIAA0430 protein; RRM d 99.6 2.2E-15 7.6E-20 134.5 11.3 81 193-279 7-91 (96)
56 4a8x_A RNA-binding protein wit 99.6 1.4E-15 4.9E-20 132.3 9.8 82 194-278 3-85 (88)
57 2cqp_A RNA-binding protein 12; 99.6 1.1E-15 3.8E-20 136.2 9.2 84 191-277 11-94 (98)
58 2dng_A Eukaryotic translation 99.6 3.2E-15 1.1E-19 134.8 12.2 84 192-280 12-95 (103)
59 2kt5_A RNA and export factor-b 99.6 5E-15 1.7E-19 138.1 13.8 85 192-280 32-116 (124)
60 2cpe_A RNA-binding protein EWS 99.6 3.1E-15 1.1E-19 136.9 12.0 86 191-279 11-104 (113)
61 2dhg_A TRNA selenocysteine ass 99.6 1.9E-15 6.6E-20 136.1 9.9 84 193-280 7-92 (104)
62 2dh8_A DAZ-associated protein 99.6 2.2E-15 7.5E-20 136.1 10.3 86 190-279 11-96 (105)
63 2cqi_A Nucleolysin TIAR; RNA r 99.6 6.5E-15 2.2E-19 132.6 13.3 84 191-279 11-94 (103)
64 2m2b_A RNA-binding protein 10; 99.6 1.6E-15 5.5E-20 143.1 9.7 86 189-278 17-108 (131)
65 2ytc_A PRE-mRNA-splicing facto 99.6 3.1E-15 1.1E-19 129.7 10.7 77 191-276 8-85 (85)
66 1x4e_A RNA binding motif, sing 99.6 5.7E-16 2E-20 134.5 6.0 82 193-277 3-84 (85)
67 3ucg_A Polyadenylate-binding p 99.6 3.3E-15 1.1E-19 130.4 10.8 81 194-278 5-85 (89)
68 3ulh_A THO complex subunit 4; 99.6 3.4E-15 1.1E-19 135.2 11.2 81 192-276 26-106 (107)
69 3s7r_A Heterogeneous nuclear r 99.6 3.6E-15 1.2E-19 130.0 10.8 80 192-275 8-87 (87)
70 3r27_A HnRNP L, heterogeneous 99.6 3.2E-15 1.1E-19 135.9 10.9 80 192-280 18-99 (100)
71 3ex7_B RNA-binding protein 8A; 99.6 2.7E-15 9.3E-20 139.9 10.4 87 191-280 18-104 (126)
72 1wi8_A EIF-4B, eukaryotic tran 99.6 5.5E-15 1.9E-19 133.4 12.1 83 192-279 12-95 (104)
73 2dgw_A Probable RNA-binding pr 99.6 6.6E-15 2.3E-19 129.6 12.1 83 191-279 6-88 (91)
74 1u6f_A Tcubp1, RNA-binding pro 99.6 3.8E-15 1.3E-19 141.2 11.4 86 191-279 38-123 (139)
75 1p1t_A Cleavage stimulation fa 99.6 8.7E-16 3E-20 138.2 6.5 84 193-279 6-89 (104)
76 2err_A Ataxin-2-binding protei 99.6 4.8E-15 1.6E-19 135.7 11.4 84 191-279 25-108 (109)
77 2cpi_A CCR4-NOT transcription 99.6 3.9E-15 1.3E-19 136.6 10.7 85 192-279 12-102 (111)
78 1s79_A Lupus LA protein; RRM, 99.6 1.9E-15 6.6E-20 137.6 8.6 81 192-277 8-88 (103)
79 2kxn_B Transformer-2 protein h 99.6 3.5E-15 1.2E-19 141.2 10.4 85 192-279 43-127 (129)
80 2dgt_A RNA-binding protein 30; 99.6 9.4E-15 3.2E-19 129.0 12.6 78 191-279 6-83 (92)
81 1x4a_A Splicing factor, argini 99.6 1.1E-14 3.7E-19 132.6 13.3 83 191-279 18-100 (109)
82 2dis_A Unnamed protein product 99.6 5.7E-15 2E-19 134.1 11.3 87 193-281 6-95 (109)
83 2dgu_A Heterogeneous nuclear r 99.6 1.3E-14 4.5E-19 130.9 13.5 78 192-280 8-85 (103)
84 3n9u_C Cleavage and polyadenyl 99.6 3E-15 1E-19 146.4 9.8 82 194-278 54-137 (156)
85 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 5.8E-15 2E-19 139.5 11.4 82 191-275 59-140 (140)
86 2cq4_A RNA binding motif prote 99.6 2.4E-15 8.4E-20 138.0 8.5 82 193-278 23-104 (114)
87 2cqg_A TDP-43, TAR DNA-binding 99.6 1.2E-14 3.9E-19 130.9 12.8 85 191-280 11-95 (103)
88 2kn4_A Immunoglobulin G-bindin 99.6 6.2E-15 2.1E-19 142.6 11.8 85 192-279 67-151 (158)
89 2a3j_A U1 small nuclear ribonu 99.6 4.4E-15 1.5E-19 140.6 10.4 82 192-279 26-111 (127)
90 2ek1_A RNA-binding protein 12; 99.6 1.9E-15 6.6E-20 133.7 7.4 84 191-277 11-94 (95)
91 2ki2_A SS-DNA binding protein 99.6 8.5E-16 2.9E-20 134.9 4.9 81 196-280 2-82 (90)
92 2la4_A Nuclear and cytoplasmic 99.6 4.5E-15 1.5E-19 133.2 9.7 77 192-277 24-100 (101)
93 2cq1_A PTB-like protein L; RRM 99.6 1.4E-14 4.6E-19 131.8 12.9 81 192-281 12-94 (101)
94 2wbr_A GW182, gawky, LD47780P; 99.6 5.4E-15 1.8E-19 131.2 9.8 75 193-276 5-79 (89)
95 2rs2_A Musashi-1, RNA-binding 99.6 8E-15 2.8E-19 134.3 11.1 84 192-279 22-105 (109)
96 2mss_A Protein (musashi1); RNA 99.6 2.2E-15 7.5E-20 127.7 6.8 75 197-275 1-75 (75)
97 1uaw_A Mouse-musashi-1; RNP-ty 99.6 2.5E-15 8.7E-20 127.6 7.0 76 196-275 1-76 (77)
98 1wex_A Hypothetical protein (r 99.6 1.3E-14 4.4E-19 132.6 12.1 80 192-280 12-93 (104)
99 2dnq_A RNA-binding protein 4B; 99.6 1.2E-14 4.1E-19 127.8 11.5 78 192-280 5-82 (90)
100 1x4g_A Nucleolysin TIAR; struc 99.6 1.1E-14 3.7E-19 132.7 11.5 80 192-280 22-101 (109)
101 1x4d_A Matrin 3; structural ge 99.6 7.8E-15 2.7E-19 133.8 10.4 77 194-279 14-93 (102)
102 2nlw_A Eukaryotic translation 99.6 8.3E-15 2.8E-19 133.0 10.6 81 193-278 13-100 (105)
103 1whx_A Hypothetical protein ri 99.6 4.2E-15 1.4E-19 136.7 8.7 80 192-280 7-86 (111)
104 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.3E-14 4.3E-19 140.6 12.4 85 192-279 36-120 (156)
105 2j76_E EIF-4B, EIF4B, eukaryot 99.6 2.6E-15 8.7E-20 135.1 7.0 82 192-278 16-98 (100)
106 2ad9_A Polypyrimidine tract-bi 99.6 1E-14 3.4E-19 136.7 11.2 82 192-282 28-111 (119)
107 2lea_A Serine/arginine-rich sp 99.6 3.8E-15 1.3E-19 141.9 8.5 86 192-280 44-129 (135)
108 2cpj_A Non-POU domain-containi 99.6 1.3E-14 4.3E-19 129.9 11.2 79 192-279 12-90 (99)
109 1nu4_A U1A RNA binding domain; 99.6 5.8E-15 2E-19 131.1 8.8 82 192-279 5-90 (97)
110 1rk8_A CG8781-PA, CG8781-PA pr 99.6 9.4E-15 3.2E-19 143.2 11.1 85 192-279 69-153 (165)
111 1why_A Hypothetical protein ri 99.6 1.6E-14 5.6E-19 128.7 11.7 79 192-279 14-94 (97)
112 2dnp_A RNA-binding protein 14; 99.6 1.6E-14 5.4E-19 127.0 11.3 77 192-279 6-82 (90)
113 1x4b_A Heterogeneous nuclear r 99.6 1.3E-14 4.3E-19 133.6 11.0 84 193-280 25-108 (116)
114 2fc9_A NCL protein; structure 99.6 2.4E-14 8.3E-19 128.4 12.4 83 191-280 11-93 (101)
115 2xnq_A Nuclear polyadenylated 99.6 1.9E-14 6.4E-19 129.1 11.5 77 191-278 18-95 (97)
116 1x5o_A RNA binding motif, sing 99.6 1.6E-14 5.4E-19 132.4 11.2 83 191-277 21-111 (114)
117 2jwn_A Embryonic polyadenylate 99.5 1.1E-14 3.9E-19 135.3 10.0 81 194-278 35-115 (124)
118 2jvo_A Nucleolar protein 3; nu 99.5 1.9E-14 6.6E-19 131.8 10.8 79 190-279 26-104 (108)
119 2e5j_A Methenyltetrahydrofolat 99.5 1.6E-14 5.4E-19 128.9 9.8 79 192-278 16-94 (97)
120 1x4c_A Splicing factor, argini 99.5 6.7E-14 2.3E-18 127.5 13.9 78 192-279 12-94 (108)
121 2jvr_A Nucleolar protein 3; RN 99.5 1.3E-14 4.6E-19 134.2 9.3 80 192-278 25-105 (111)
122 2cpd_A Apobec-1 stimulating pr 99.5 5.7E-14 1.9E-18 125.6 13.1 77 192-279 12-90 (99)
123 2cpy_A RNA-binding protein 12; 99.5 1.8E-14 6.2E-19 132.7 9.9 82 192-278 12-94 (114)
124 2krb_A Eukaryotic translation 99.5 6.5E-15 2.2E-19 127.1 6.5 74 195-273 1-81 (81)
125 1wg5_A Heterogeneous nuclear r 99.5 2.8E-14 9.6E-19 129.3 10.6 83 192-279 12-95 (104)
126 3lqv_A PRE-mRNA branch site pr 99.5 2.4E-14 8.2E-19 131.4 10.3 80 193-278 6-85 (115)
127 2fc8_A NCL protein; structure 99.5 4.5E-14 1.6E-18 126.6 11.7 82 192-279 12-93 (102)
128 2kvi_A Nuclear polyadenylated 99.5 1.9E-14 6.7E-19 128.2 8.8 78 192-280 7-85 (96)
129 2hvz_A Splicing factor, argini 99.5 2.3E-14 8E-19 128.5 9.2 76 196-279 1-76 (101)
130 1fj7_A Nucleolin RBD1, protein 99.5 5E-15 1.7E-19 132.9 4.8 81 194-279 16-96 (101)
131 1x4f_A Matrin 3; structural ge 99.5 1.8E-14 6E-19 133.7 8.4 79 192-279 22-103 (112)
132 4f02_A Polyadenylate-binding p 99.5 3.3E-14 1.1E-18 144.5 11.1 82 194-278 14-95 (213)
133 2cpx_A Hypothetical protein FL 99.5 4.6E-14 1.6E-18 129.3 10.4 81 192-279 22-106 (115)
134 2xs2_A Deleted in azoospermia- 99.5 1.4E-14 4.7E-19 130.2 6.7 82 192-279 6-87 (102)
135 2cqh_A IGF-II mRNA-binding pro 99.5 3.8E-14 1.3E-18 125.2 9.4 78 192-279 5-84 (93)
136 1iqt_A AUF1, heterogeneous nuc 99.5 1.1E-14 3.9E-19 123.1 5.5 75 197-275 1-75 (75)
137 1wel_A RNA-binding protein 12; 99.5 1.4E-14 4.9E-19 135.2 6.6 83 192-278 22-104 (124)
138 1x5p_A Negative elongation fac 99.5 1.7E-13 5.7E-18 122.3 13.2 78 192-280 12-89 (97)
139 3q2s_C Cleavage and polyadenyl 99.5 2.1E-14 7.2E-19 148.7 8.4 81 194-277 67-149 (229)
140 2db1_A Heterogeneous nuclear r 99.5 3.9E-14 1.3E-18 131.6 9.2 82 192-278 14-98 (118)
141 1wez_A HnRNP H', FTP-3, hetero 99.5 6E-14 2.1E-18 127.3 10.2 82 192-279 12-93 (102)
142 2lcw_A RNA-binding protein FUS 99.2 1.9E-15 6.6E-20 139.2 0.0 85 192-279 4-96 (116)
143 1wg1_A KIAA1579 protein, homol 99.5 7.1E-14 2.4E-18 122.6 9.9 77 193-279 3-79 (88)
144 2qfj_A FBP-interacting repress 99.5 7.8E-14 2.7E-18 140.0 11.4 84 194-280 124-207 (216)
145 2f3j_A RNA and export factor b 99.5 4.9E-14 1.7E-18 140.4 9.6 85 192-280 85-169 (177)
146 1wf1_A RNA-binding protein RAL 99.5 1.4E-13 4.7E-18 125.6 11.8 76 192-278 24-100 (110)
147 3md3_A Nuclear and cytoplasmic 99.5 1.3E-13 4.4E-18 132.0 12.1 83 192-277 84-166 (166)
148 2hgl_A HNRPF protein, heteroge 99.5 4E-14 1.4E-18 135.5 8.5 82 191-277 40-124 (136)
149 3egn_A RNA-binding protein 40; 99.5 6.2E-14 2.1E-18 133.8 9.7 87 193-279 43-131 (143)
150 2i2y_A Fusion protein consists 99.5 6.9E-14 2.4E-18 134.5 10.1 80 191-278 69-148 (150)
151 2e44_A Insulin-like growth fac 99.5 8.8E-14 3E-18 123.4 10.0 80 193-279 13-93 (96)
152 2cq2_A Hypothetical protein LO 99.5 5.9E-14 2E-18 130.6 9.1 79 193-280 23-108 (114)
153 2e5g_A U6 snRNA-specific termi 99.5 1.5E-13 5.1E-18 121.9 11.4 77 194-279 7-83 (94)
154 1fjc_A Nucleolin RBD2, protein 99.5 5.8E-14 2E-18 124.6 8.7 80 192-279 13-92 (96)
155 2lmi_A GRSF-1, G-rich sequence 99.5 3.4E-14 1.2E-18 129.4 6.9 82 192-278 8-92 (107)
156 1fxl_A Paraneoplastic encephal 99.5 1.3E-13 4.5E-18 132.1 11.2 81 195-278 2-82 (167)
157 3pgw_S U1-70K; protein-RNA com 99.5 3E-13 1E-17 152.7 15.4 85 193-280 100-184 (437)
158 2dnn_A RNA-binding protein 12; 99.5 1.3E-13 4.5E-18 127.0 9.9 78 194-277 15-92 (109)
159 1b7f_A Protein (SXL-lethal pro 99.5 1.2E-13 4.2E-18 132.9 10.0 82 194-278 2-83 (168)
160 1sjr_A Polypyrimidine tract-bi 99.5 2.9E-13 9.9E-18 133.4 12.3 80 194-280 45-126 (164)
161 3zzy_A Polypyrimidine tract-bi 99.4 2.3E-13 7.8E-18 129.4 10.6 78 195-280 28-108 (130)
162 3tyt_A Heterogeneous nuclear r 99.4 4.1E-13 1.4E-17 136.6 12.0 80 193-280 2-82 (205)
163 2g4b_A Splicing factor U2AF 65 99.4 3.5E-13 1.2E-17 130.4 10.9 79 194-275 93-171 (172)
164 2e5i_A Heterogeneous nuclear r 99.4 6.8E-13 2.3E-17 125.2 12.2 75 197-280 27-104 (124)
165 2yh0_A Splicing factor U2AF 65 99.4 5.9E-13 2E-17 131.8 12.0 84 193-279 112-195 (198)
166 3u1l_A PRE-mRNA-splicing facto 99.4 2.1E-13 7.1E-18 142.3 9.0 81 191-280 130-231 (240)
167 3d2w_A TAR DNA-binding protein 99.4 4.4E-13 1.5E-17 118.5 9.8 76 191-278 7-84 (89)
168 2cjk_A Nuclear polyadenylated 99.4 2.3E-13 7.8E-18 131.1 8.1 80 195-278 87-166 (167)
169 2j8a_A Histone-lysine N-methyl 99.4 2.3E-13 7.9E-18 128.6 7.8 79 196-277 3-95 (136)
170 2bz2_A Negative elongation fac 99.4 5.6E-13 1.9E-17 124.7 10.1 76 193-279 37-112 (121)
171 1l3k_A Heterogeneous nuclear r 99.4 5E-13 1.7E-17 132.1 10.3 83 192-278 10-92 (196)
172 4f02_A Polyadenylate-binding p 99.4 5.5E-13 1.9E-17 135.4 10.6 79 195-278 103-181 (213)
173 2hzc_A Splicing factor U2AF 65 99.4 5.3E-13 1.8E-17 115.9 8.9 72 193-274 4-86 (87)
174 2diu_A KIAA0430 protein; struc 99.4 5.8E-13 2E-17 119.4 8.9 74 193-279 7-85 (96)
175 3beg_B Splicing factor, argini 99.4 6.2E-13 2.1E-17 122.8 9.2 75 193-277 14-93 (115)
176 2hgm_A HNRPF protein, heteroge 99.4 4.6E-13 1.6E-17 126.6 8.3 80 192-277 39-120 (126)
177 3md3_A Nuclear and cytoplasmic 99.4 1E-12 3.5E-17 125.7 10.9 80 196-279 1-80 (166)
178 2dnl_A Cytoplasmic polyadenyla 99.4 6.3E-13 2.2E-17 122.3 8.8 79 193-277 6-87 (114)
179 1b7f_A Protein (SXL-lethal pro 99.4 1.2E-12 4.1E-17 126.0 10.9 80 193-275 87-168 (168)
180 3pgw_A U1-A; protein-RNA compl 99.4 9.5E-12 3.2E-16 130.7 18.6 82 192-279 6-91 (282)
181 2qfj_A FBP-interacting repress 99.4 8.8E-13 3E-17 132.3 9.9 81 194-277 27-107 (216)
182 2hgn_A Heterogeneous nuclear r 99.4 2.4E-13 8.3E-18 130.6 5.3 81 193-279 44-124 (139)
183 1l3k_A Heterogeneous nuclear r 99.4 1.2E-12 4.1E-17 129.3 10.3 84 193-280 102-185 (196)
184 2dha_A FLJ20171 protein; RRM d 99.4 4.5E-13 1.5E-17 126.1 6.5 80 193-277 21-104 (123)
185 1wf0_A TDP-43, TAR DNA-binding 99.4 8.6E-13 2.9E-17 115.4 7.6 75 193-279 3-79 (88)
186 1fxl_A Paraneoplastic encephal 99.4 1.4E-12 4.8E-17 124.9 9.8 80 193-275 86-167 (167)
187 2cjk_A Nuclear polyadenylated 99.3 1.7E-12 5.8E-17 125.0 9.0 79 194-277 2-80 (167)
188 3nmr_A Cugbp ELAV-like family 99.3 2.1E-12 7.3E-17 124.8 9.7 79 193-275 93-174 (175)
189 3nmr_A Cugbp ELAV-like family 99.3 2E-12 6.9E-17 125.0 9.0 82 194-278 2-88 (175)
190 2pe8_A Splicing factor 45; RRM 99.3 5.4E-12 1.8E-16 115.4 10.8 82 193-277 6-93 (105)
191 1fje_B Nucleolin RBD12, protei 99.3 3.5E-12 1.2E-16 124.1 9.9 79 192-278 96-174 (175)
192 2dt7_B Splicing factor 3 subun 99.3 8.9E-13 3.1E-17 116.1 4.9 55 352-407 30-84 (85)
193 2voo_A Lupus LA protein; RNA-b 99.3 4.5E-12 1.5E-16 127.9 10.0 79 194-277 108-186 (193)
194 2ghp_A U4/U6 snRNA-associated 99.3 4.1E-12 1.4E-16 134.2 10.0 83 192-278 207-291 (292)
195 2adc_A Polypyrimidine tract-bi 99.3 5.4E-12 1.8E-16 129.5 9.5 80 192-279 31-111 (229)
196 3pgw_A U1-A; protein-RNA compl 99.3 8.6E-12 3E-16 131.0 11.3 78 191-276 203-281 (282)
197 3smz_A Protein raver-1, ribonu 99.3 1.2E-11 4.2E-16 130.0 11.4 83 194-279 94-176 (284)
198 3smz_A Protein raver-1, ribonu 99.3 1.2E-11 4E-16 130.2 11.1 84 192-279 181-265 (284)
199 1qm9_A Polypyrimidine tract-bi 99.3 1.1E-11 3.9E-16 123.2 10.1 79 192-278 117-197 (198)
200 3sde_A Paraspeckle component 1 99.3 1.5E-11 5.2E-16 128.7 11.2 76 193-277 20-95 (261)
201 1qm9_A Polypyrimidine tract-bi 99.2 9.2E-12 3.2E-16 123.9 8.3 77 195-279 3-80 (198)
202 2dit_A HIV TAT specific factor 99.2 4.7E-11 1.6E-15 109.5 12.2 79 193-278 13-102 (112)
203 2adc_A Polypyrimidine tract-bi 99.2 1.8E-11 6.3E-16 125.5 10.5 79 192-278 148-228 (229)
204 1fje_B Nucleolin RBD12, protei 99.2 3.9E-12 1.3E-16 123.7 4.8 82 192-278 10-91 (175)
205 2g4b_A Splicing factor U2AF 65 99.2 2.8E-11 9.7E-16 116.9 10.1 75 194-278 3-88 (172)
206 2yh0_A Splicing factor U2AF 65 99.2 8.5E-11 2.9E-15 116.2 12.8 76 194-279 3-89 (198)
207 3tyt_A Heterogeneous nuclear r 99.2 2.2E-11 7.7E-16 123.7 8.5 78 193-275 121-204 (205)
208 1jmt_A Splicing factor U2AF 35 99.2 1.7E-11 5.7E-16 111.8 5.5 73 199-275 19-103 (104)
209 3v4m_A Splicing factor U2AF 65 99.2 8.3E-11 2.8E-15 107.4 9.7 81 193-276 3-95 (105)
210 2ghp_A U4/U6 snRNA-associated 99.2 5.9E-11 2E-15 125.3 9.8 82 194-279 116-198 (292)
211 3sde_A Paraspeckle component 1 99.1 7.3E-11 2.5E-15 123.5 9.7 80 195-278 96-179 (261)
212 2d9o_A DNAJ (HSP40) homolog, s 99.1 2.5E-10 8.7E-15 103.6 11.6 75 195-279 10-91 (100)
213 3tht_A Alkylated DNA repair pr 99.1 1.3E-10 4.3E-15 127.3 9.1 78 192-278 15-99 (345)
214 3ue2_A Poly(U)-binding-splicin 99.1 1.9E-10 6.5E-15 107.4 8.9 83 194-276 19-107 (118)
215 3clj_A Protein NRD1; CTD-inter 99.1 7.9E-11 2.7E-15 114.8 6.4 128 463-600 3-146 (157)
216 3s6e_A RNA-binding protein 39; 98.9 8.2E-09 2.8E-13 95.8 10.3 77 194-277 6-92 (114)
217 2dnr_A Synaptojanin-1; RRM dom 98.7 3.6E-08 1.2E-12 87.7 7.9 75 193-279 5-87 (91)
218 1x4p_A Putative splicing facto 98.6 7.6E-09 2.6E-13 84.7 1.2 56 351-408 5-60 (66)
219 1owx_A Lupus LA protein, SS-B, 98.6 1.1E-07 3.7E-12 89.2 9.1 74 192-274 15-92 (121)
220 3dxb_A Thioredoxin N-terminall 98.4 3.3E-07 1.1E-11 93.3 7.6 70 207-276 141-211 (222)
221 4dgw_B PRE-mRNA-splicing facto 98.4 1.9E-07 6.7E-12 90.3 5.4 51 354-407 8-58 (152)
222 1ufw_A Synaptojanin 2; RNP dom 98.4 3.2E-07 1.1E-11 82.1 6.0 72 192-275 12-92 (95)
223 2l9w_A U4/U6 snRNA-associated- 97.6 0.0003 1E-08 64.4 9.5 71 195-274 21-96 (117)
224 1wey_A Calcipressin 1; structu 97.6 0.00039 1.3E-08 63.2 10.1 76 195-279 5-85 (104)
225 2dhx_A Poly (ADP-ribose) polym 95.3 0.28 9.4E-06 44.5 12.8 68 194-273 7-79 (104)
226 1uw4_A UPF3X; nonsense mediate 95.0 0.16 5.6E-06 45.0 10.4 69 196-266 2-71 (91)
227 1wwh_A Nucleoporin 35, nucleop 94.6 0.1 3.5E-06 48.5 8.3 70 194-274 23-93 (119)
228 3ctr_A Poly(A)-specific ribonu 94.5 0.037 1.3E-06 49.8 4.8 52 198-261 9-60 (101)
229 1whv_A Poly(A)-specific ribonu 94.4 0.037 1.3E-06 49.6 4.7 57 193-260 13-69 (100)
230 2i2y_A Fusion protein consists 90.6 0.13 4.5E-06 48.5 3.0 40 237-277 10-50 (150)
231 2kn4_A Immunoglobulin G-bindin 88.3 0.33 1.1E-05 45.9 4.0 30 237-266 10-39 (158)
232 3pq1_A Poly(A) RNA polymerase; 88.0 0.26 8.7E-06 55.9 3.5 54 196-258 54-107 (464)
233 2l08_A Regulator of nonsense t 87.1 1.2 4.2E-05 39.8 6.6 70 195-266 9-79 (97)
234 3p3d_A Nucleoporin 53; structu 86.3 0.83 2.9E-05 43.1 5.3 78 195-274 7-95 (132)
235 3d45_A Poly(A)-specific ribonu 65.4 14 0.00046 42.3 8.4 55 195-261 440-494 (507)
236 1juq_A ADP-ribosylation factor 61.1 9.3 0.00032 37.3 5.3 110 465-588 13-133 (171)
237 1x5b_A Signal transducing adap 57.5 32 0.0011 33.1 8.4 100 466-584 16-126 (163)
238 3g2s_A C-terminal fragment of 54.0 55 0.0019 31.1 9.2 111 466-585 12-128 (149)
239 1mhq_A ADP-ribosylation factor 53.6 26 0.00089 33.3 6.9 115 466-590 2-123 (148)
240 3zyq_A Hepatocyte growth facto 52.9 33 0.0011 34.7 8.0 106 465-584 8-119 (226)
241 3ldz_A STAM-1, signal transduc 52.7 58 0.002 30.5 9.1 104 466-584 6-115 (140)
242 1dvp_A HRS, hepatocyte growth 38.2 79 0.0027 31.6 8.0 77 489-584 35-116 (220)
243 2g0c_A ATP-dependent RNA helic 36.9 66 0.0023 26.4 6.0 68 197-276 2-75 (76)
244 4f25_A Polyadenylate-binding p 35.4 7.9 0.00027 34.5 0.0 19 193-211 95-113 (115)
245 1elk_A Target of MYB1; superhe 29.8 57 0.002 31.1 5.1 104 466-585 17-132 (157)
246 3rru_A TOM1L1 protein; structu 27.0 1.5E+02 0.0051 28.2 7.4 107 466-584 17-131 (152)
247 2jak_A Serine/threonine-protei 22.0 1.8E+02 0.0061 32.0 7.8 89 478-585 277-366 (392)
No 1
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=99.94 E-value=7.2e-27 Score=225.73 Aligned_cols=129 Identities=12% Similarity=0.245 Sum_probs=118.5
Q ss_pred HHHHHHHHhhcCcchHhHHHHHHHHhhcccchHHHHHHHHHHhhcccccchhhhhhhhhhhhhhhhcccCCCChhhHHHH
Q psy17497 463 RHRLEDFLRNLTPERVKVAEAMVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASFYRRG 542 (806)
Q Consensus 463 r~~Le~lL~~Lt~tr~sI~~~m~w~l~ha~~A~eIvd~i~~sl~~~~t~~~kKLa~LYLinDILhNs~~kv~na~~yr~~ 542 (806)
.++|+.+|++|++|+++|+++|.|||+|..+|.+||+||.++|....+++.+||++|||+|||||||.++ ++..|+.+
T Consensus 5 ~~~l~~kL~~L~~sq~sIq~~s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k--~~~~f~~~ 82 (142)
T 2km4_A 5 SEQFTTKLNTLEDSQESISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQ--KIIQFQDS 82 (142)
T ss_dssp HHHHHHHHHTCCSCHHHHHHHHHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGG--TCCHHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhc--CchHHHHH
Confidence 4689999999999999999999999999999999999999999988778899999999999999999764 66789999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhccccccCCHHHHHHHHHHHcC
Q psy17497 543 FESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWAVYPKDYLIKLQNVFLG 601 (806)
Q Consensus 543 fe~~Lp~IF~~l~~~y~~~~gr~~ae~~k~kV~~VL~iWe~~~vfp~~~l~~L~~~f~g 601 (806)
|+++||.+|.++.. .. .+..+++|.+||++|++|.||+++++..|++.+.|
T Consensus 83 F~~~L~~~~~~~~~---~~-----~~~~~~kv~rvl~iWeer~vf~~~~i~~L~~~l~~ 133 (142)
T 2km4_A 83 FGKVAAEVLGRINQ---EF-----PRDLKKKLSRVVNILKERNIFSKQVVNDIERSLAA 133 (142)
T ss_dssp HHHTHHHHHHHHHH---HS-----CHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---cC-----CHHHHHHHHHHHHHhhccCCcCHHHHHHHHHHHHh
Confidence 99999999877533 22 47889999999999999999999999999999876
No 2
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=99.93 E-value=4.2e-26 Score=217.90 Aligned_cols=128 Identities=21% Similarity=0.379 Sum_probs=113.5
Q ss_pred HHHHHHHHHhhcCcchHhHHHHHHHHhhcccchHHHHHHHHHHhhcccccchhhhhhhhhhhhhhhhcccCCCChhhHHH
Q psy17497 462 QRHRLEDFLRNLTPERVKVAEAMVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASFYRR 541 (806)
Q Consensus 462 ~r~~Le~lL~~Lt~tr~sI~~~m~w~l~ha~~A~eIvd~i~~sl~~~~t~~~kKLa~LYLinDILhNs~~kv~na~~yr~ 541 (806)
..+.|+++|+.||+++++|+++|.|||+|+.+|.+||++|.++|... +..+||++|||+|||||||.+ +++.|+.
T Consensus 5 ~~~~l~~~L~~L~~s~~sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~--~~~~KL~~LYLindIl~ns~~---~~~~y~~ 79 (135)
T 4fu3_A 5 SESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKA--KSNRKLTFLYLANDVIQNSKR---KGPEFTR 79 (135)
T ss_dssp CHHHHHHHHHHCCSSTTHHHHHHHHHHHTGGGHHHHHHHHHHHHHHS--CTTTHHHHHHHHHHHHHHHTT---TCSHHHH
T ss_pred CHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHh---cCHHHHH
Confidence 45789999999999999999999999999999999999999999874 448999999999999999975 3568999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhccccccCCHHHHHHHHHHHcCC
Q psy17497 542 GFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWAVYPKDYLIKLQNVFLGL 602 (806)
Q Consensus 542 ~fe~~Lp~IF~~l~~~y~~~~gr~~ae~~k~kV~~VL~iWe~~~vfp~~~l~~L~~~f~g~ 602 (806)
.|+.+||.+|.++... ..++++++|.+||++|++|.|||+++|.+|+..|.+.
T Consensus 80 ~f~~~l~~~~~~~~~~--------~~~~~k~kl~kll~iW~~r~vf~~~~i~~L~~~l~~~ 132 (135)
T 4fu3_A 80 EFESVLVDAFSHVARE--------ADEGCKKPLERLLNIWQERSVYGGEFIQQLKLSMEDS 132 (135)
T ss_dssp HHHTTHHHHHHHHHHH--------HHTTSSHHHHHHHHHHHHTTSSCHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHhCC
Confidence 9999999999885432 2477899999999999999999999999999998764
No 3
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=99.92 E-value=1.9e-25 Score=212.74 Aligned_cols=127 Identities=23% Similarity=0.456 Sum_probs=115.0
Q ss_pred hHHHHHHHHHHhhcCcchHhHHHHHHHHhhcccchHHHHHHHHHHhhcccccchhhhhhhhhhhhhhhhcccCCCChhhH
Q psy17497 460 NSQRHRLEDFLRNLTPERVKVAEAMVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASFY 539 (806)
Q Consensus 460 ~~~r~~Le~lL~~Lt~tr~sI~~~m~w~l~ha~~A~eIvd~i~~sl~~~~t~~~kKLa~LYLinDILhNs~~kv~na~~y 539 (806)
....+.|+.+|++|+++++||+++|.|||+|..+|.+||++|.++|.. ++..+||++|||+|||||||.++ +++.|
T Consensus 4 ~~~e~~l~~~L~~L~~s~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~--~~~~~KL~~LYL~ndIl~ns~~~--~~~~f 79 (132)
T 4flb_A 4 GALESSLDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRR--SAYPHRLNLFYLANDVIQNCKRK--NAIIF 79 (132)
T ss_dssp HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHTTTT--TCTHH
T ss_pred hHHHHHHHHHHHHCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CChhhHHHHHHHHHHHHHHhccc--ChHHH
Confidence 345678999999999999999999999999999999999999999976 56699999999999999999664 78899
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhccccccCCHHHHHHHHHHHcC
Q psy17497 540 RRGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWAVYPKDYLIKLQNVFLG 601 (806)
Q Consensus 540 r~~fe~~Lp~IF~~l~~~y~~~~gr~~ae~~k~kV~~VL~iWe~~~vfp~~~l~~L~~~f~g 601 (806)
+..|+.+||.+|.++ ..++++++|.+||++|++|.|||+++|.+|++.+..
T Consensus 80 ~~~f~~~l~~~~~~~-----------~~~~~~~kl~~ll~iW~~r~vf~~~~i~~L~~~L~~ 130 (132)
T 4flb_A 80 RESFADVLPEAAALV-----------KDPSVSKSVERIFKIWEDRNVYPEEMIVALREALST 130 (132)
T ss_dssp HHHHHTTHHHHHHTT-----------CSTTTHHHHHHHHHHHHHHTSSCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHhc
Confidence 999999999998763 146789999999999999999999999999998754
No 4
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1
Probab=99.85 E-value=3.2e-22 Score=173.90 Aligned_cols=73 Identities=23% Similarity=0.423 Sum_probs=68.1
Q ss_pred ceeeeecCCCHHHHHHHHHHHHHHHhcChHHHHHHHhhcCCCCCcccccCCCCCCCchhHHHHHHHhcCCCCC
Q psy17497 341 AYVKVVVPTDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSILQGDQPK 413 (806)
Q Consensus 341 ~~V~v~~P~d~~~~~~Idk~a~~V~~~G~~FE~~l~~re~~np~F~FL~d~~sp~h~YYrwrl~s~~~gd~~~ 413 (806)
..+.|.+|+|+.++.+|++||+||++||++||++||+++++||+|+||++.++++|.||||||+++.+|+..+
T Consensus 5 ~~~~v~pP~d~~~~~iIdktA~fVaknG~~fE~~l~~~~~~Np~F~FL~d~~~~~h~YYr~kl~e~~~g~~~~ 77 (78)
T 1x4o_A 5 SSGKVSPPEDEEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRYYRQKLDEFRKSGPSS 77 (78)
T ss_dssp CCSCSCCCSCHHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHCSSTTTTTCSSSSHHHHHHHHHHHHHCCCCCC
T ss_pred CCCCCcCcCCHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCCCCCCeecCCCCCCCcHHHHHHHHHHHhcCCCC
Confidence 3467889999999999999999999999999999999999999999999989999999999999999998543
No 5
>1ug0_A Splicing factor 4; SURP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: a.217.1.1
Probab=99.84 E-value=3.3e-22 Score=177.50 Aligned_cols=73 Identities=27% Similarity=0.487 Sum_probs=69.1
Q ss_pred ceeeeecCCCHHHHHHHHHHHHHHHhcChHHHHHHHhhcCCCCCcccccCCCCCCCchhHHHHHHHhcCCCCC
Q psy17497 341 AYVKVVVPTDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSILQGDQPK 413 (806)
Q Consensus 341 ~~V~v~~P~d~~~~~~Idk~a~~V~~~G~~FE~~l~~re~~np~F~FL~d~~sp~h~YYrwrl~s~~~gd~~~ 413 (806)
..|.|.+|.|+.++.+|++||+||++||++||++||+++++||+|+||++..+|+|.||||||+++.+|++.+
T Consensus 15 ~~v~v~pP~d~~~~~iIdktA~fVaknG~~FE~~l~~~e~~NpkF~FL~~~~~~~h~YYr~kl~e~~~g~~~s 87 (88)
T 1ug0_A 15 LEIKVSPPEGAETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKNSREFLYYRRKVAEIRKSGPSS 87 (88)
T ss_dssp HTSCCSSGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTCSSSHHHHCSSCHHHHHHHHHHHHHHHSCCSC
T ss_pred ceeeeCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCCCCCCeecCCCCCCCcHHHHHHHHHHHccCCCC
Confidence 4588899999999999999999999999999999999999999999999988999999999999999998654
No 6
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=99.81 E-value=1.6e-19 Score=174.74 Aligned_cols=125 Identities=19% Similarity=0.363 Sum_probs=113.4
Q ss_pred HHHHHHHHHHhhcC-cchHhHHHHHHHHhhcccchHHHHHHHHHHhhcccccchhhhhhhhhhhhhhhhcccCCCChhhH
Q psy17497 461 SQRHRLEDFLRNLT-PERVKVAEAMVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASFY 539 (806)
Q Consensus 461 ~~r~~Le~lL~~Lt-~tr~sI~~~m~w~l~ha~~A~eIvd~i~~sl~~~~t~~~kKLa~LYLinDILhNs~~kv~na~~y 539 (806)
...+.|...|..|+ +++.+|..++.||++|..+|.+||++|.+++.. ++..+||..|||++||++||.. .|
T Consensus 7 ~~~~~f~~~L~~L~~nSk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k--~~p~~KL~~LYL~DsIvkN~g~------~y 78 (144)
T 1sz9_A 7 VIVKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEK--CMPKQKLYAFYALDSICKNVGS------PY 78 (144)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHTCT------TH
T ss_pred HHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCHhhHHHHHHHHHHHHHhccc------hH
Confidence 44578999999999 999999999999999999999999999999976 6679999999999999999853 49
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhcccc-----ccCCHHHHHHHHHHHcC
Q psy17497 540 RRGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDW-----AVYPKDYLIKLQNVFLG 601 (806)
Q Consensus 540 r~~fe~~Lp~IF~~l~~~y~~~~gr~~ae~~k~kV~~VL~iWe~~-----~vfp~~~l~~L~~~f~g 601 (806)
...|+..|+.+|.+ +|..+ .+..|.+|.+||++|++| .|||+++|..|++.+..
T Consensus 79 ~~~F~~~l~~~f~~---~~~~~-----d~~~r~k~~rL~~~W~~~~~~~~~vF~~~~l~~i~~~l~~ 137 (144)
T 1sz9_A 79 TIYFSRNLFNLYKR---TYLLV-----DNTTRTKLINMFKLWLNPNDTGLPLFEGSALEKIEQFLIK 137 (144)
T ss_dssp HHHHHTTHHHHHHH---HHHTS-----CHHHHHHHHHHHHHHTSGGGCSSCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHhC-----CHHHHHHHHHHHHHHhCcccCCCCCCCHHHHHHHHHHHHh
Confidence 99999999999987 55554 488999999999999999 99999999999998754
No 7
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.9e-19 Score=158.36 Aligned_cols=65 Identities=25% Similarity=0.462 Sum_probs=58.0
Q ss_pred ecCCCHHHHHHHHHHHHHHHhcChHHHHHHHhhcCCCCCcccccCCCCCCCchhHHHHHHHhcCCCCC
Q psy17497 346 VVPTDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSILQGDQPK 413 (806)
Q Consensus 346 ~~P~d~~~~~~Idk~a~~V~~~G~~FE~~l~~re~~np~F~FL~d~~sp~h~YYrwrl~s~~~gd~~~ 413 (806)
+||++++++.+||+||+||++||++||++||++ +||+|+||++ .+|+|.||+|||+++++|+...
T Consensus 17 ii~PPpdir~iIdktA~fVaknG~~FE~~i~~k--~np~F~FL~~-~~pyh~YY~~kl~e~~~~~~~~ 81 (90)
T 2e5z_A 17 IIPPPPDVQPVIDKLAEYVARNGLKFETSVRAK--NDQRFEFLQP-WHQYNAYYEFKKQFFLQKEGGD 81 (90)
T ss_dssp CCCCCTTTHHHHHHHHHHHHHSCHHHHHHHHHH--CCGGGCTTSS-SCSTHHHHHHHHHHHHHHTCCC
T ss_pred ccCCCHHHHHHHHHHHHHHHHccHHHHHHHHHh--CCCCceeCCC-CCcccHHHHHHHHHHHhccCCC
Confidence 344456799999999999999999999999987 8999999997 6799999999999999988654
No 8
>2e60_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.9e-19 Score=160.76 Aligned_cols=69 Identities=26% Similarity=0.458 Sum_probs=64.0
Q ss_pred eeecCCCHHHHHHHHHHHHHHHhcChHHHHHHHhhcCCCCCcccccCCCCCCCchhHHHHHHHhcCCCCC
Q psy17497 344 KVVVPTDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSILQGDQPK 413 (806)
Q Consensus 344 ~v~~P~d~~~~~~Idk~a~~V~~~G~~FE~~l~~re~~np~F~FL~d~~sp~h~YYrwrl~s~~~gd~~~ 413 (806)
.|++|++..++.+|++||+||++||++||++||+|+++||+|+||+ ..|++|.||+|+|+++.+|+...
T Consensus 18 ~v~~P~~~~~~~iI~ktA~fVarnG~~FE~~l~~re~~Np~F~FL~-~~~~~h~YY~~kl~~~~~g~~~~ 86 (101)
T 2e60_A 18 DVELPPTAKMHAIIERTASFVCRQGAQFEIMLKAKQARNSQFDFLR-FDHYLNPYYKFIQKAMKEGRYTV 86 (101)
T ss_dssp SSCCCSSHHHHHHHHHHHHHHHHSCHHHHHHHHHHTTSCSTTGGGS-TTSTHHHHHHHHHHHHHHTSCCC
T ss_pred CccCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHccccCCCCccCC-CCCCCcHHHHHHHHHHHcCCCCc
Confidence 4788999999999999999999999999999999999999999996 57889999999999999997543
No 9
>2dt6_A Splicing factor 3 subunit 1; structure genomics, SF3A120, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=99.76 E-value=5.5e-19 Score=148.04 Aligned_cols=60 Identities=37% Similarity=0.676 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHhhcCCCCCcccccCCCCCCCchhHHHHHHHhcCCCC
Q psy17497 352 TLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSILQGDQP 412 (806)
Q Consensus 352 ~~~~~Idk~a~~V~~~G~~FE~~l~~re~~np~F~FL~d~~sp~h~YYrwrl~s~~~gd~~ 412 (806)
+++.+|++||+||++||++||++||+++++||+|+||++ .+|+|.||+|+|+++.+|++.
T Consensus 2 ~i~~iI~ktA~fVarnG~~fE~~l~~~e~~np~F~FL~~-~~~~h~YY~~~l~~~~~g~~~ 61 (64)
T 2dt6_A 2 EVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNP-NDPYHAYYRHKVSEFKEGKAQ 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHCTHHHHHHHHHSTTCGGGGGGST-TSTTHHHHHHHHHHHHHTCSC
T ss_pred hHHHHHHHHHHHHHHcCHHHHHHHHHhccCCCCcccCCC-CCCCchHHHHHHHHHHcCCCC
Confidence 578999999999999999999999999999999999997 578999999999999999854
No 10
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.75 E-value=2.8e-18 Score=155.04 Aligned_cols=82 Identities=30% Similarity=0.507 Sum_probs=78.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
...|+|||+|||+.+|+++|+.+|++||.|.+|+|+ .+..+|+++|||||+|.+.++|++|+..|||..|+|+.|+|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~---~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V 93 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLI---RDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKV 93 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEE---ECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEee---ecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 446899999999999999999999999999999999 67888999999999999999999999999999999999999
Q ss_pred EeccC
Q psy17497 273 GWGKS 277 (806)
Q Consensus 273 ~~ak~ 277 (806)
.||+|
T Consensus 94 ~~AkP 98 (99)
T 4fxv_A 94 SYARP 98 (99)
T ss_dssp EECCB
T ss_pred EEeeC
Confidence 99985
No 11
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=99.71 E-value=1.8e-17 Score=160.54 Aligned_cols=129 Identities=11% Similarity=0.268 Sum_probs=111.5
Q ss_pred HHHHHHHHHhhc-----CcchHhHHHHHHHHhhcccchHHHHHHHHHHhhcccccchhhhhhhhhhhhhhhhcccCCC-C
Q psy17497 462 QRHRLEDFLRNL-----TPERVKVAEAMVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKIS-N 535 (806)
Q Consensus 462 ~r~~Le~lL~~L-----t~tr~sI~~~m~w~l~ha~~A~eIvd~i~~sl~~~~t~~~kKLa~LYLinDILhNs~~kv~-n 535 (806)
..+.|+..|..| +.++.+|..++.||++|..+|..||++|.+++.. ++..+||..|||+|||++|+..+.. .
T Consensus 3 ~v~~f~~~L~~L~~~k~~~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k--~~~~~KL~~LYL~DsIvrn~~~k~~~~ 80 (145)
T 3d9j_A 3 AVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQK--CKPEYKVPGLYVIDSIVRQSRHQFGQE 80 (145)
T ss_dssp HHHHHHHHHHGGGGSCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHH--SCGGGHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCccceeehhhhhHHHHHHhhhhcCCc
Confidence 357899999999 4578999999999999999999999999999987 4569999999999999999975421 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhccccccCCHHHHHHHHHHHcC
Q psy17497 536 ASFYRRGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWAVYPKDYLIKLQNVFLG 601 (806)
Q Consensus 536 a~~yr~~fe~~Lp~IF~~l~~~y~~~~gr~~ae~~k~kV~~VL~iWe~~~vfp~~~l~~L~~~f~g 601 (806)
...|...|...|+.+|.+ +|.. .+..|.+|.+||++|+++.|||+++|..|+..+.+
T Consensus 81 ~~~f~~~F~~~L~~~f~~---~~~~------~~~~r~kl~rLl~iW~~r~vF~~~~l~~l~~~l~~ 137 (145)
T 3d9j_A 81 KDVFAPRFSNNIISTFQN---LYRC------PGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAA 137 (145)
T ss_dssp TCSHHHHHHHHHHHHHHH---HTSS------CGGGHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHH---HHhC------CHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcC
Confidence 236999999999999875 4422 27789999999999999999999999999998865
No 12
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.70 E-value=2e-16 Score=145.34 Aligned_cols=90 Identities=21% Similarity=0.547 Sum_probs=82.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
.....++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+|.++|||||+|.+.++|++|+..|||..|+|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~---~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVV---KDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE---ECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---EcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34567899999999999999999999999999999999 566789999999999999999999999999999999999
Q ss_pred EEEeccCCCCCCC
Q psy17497 271 KLGWGKSVPIPSY 283 (806)
Q Consensus 271 rV~~ak~~~~p~~ 283 (806)
+|.|+++....+.
T Consensus 88 ~V~~a~~~~~~~~ 100 (115)
T 2dgo_A 88 RTNWATRKPPAPK 100 (115)
T ss_dssp EEEESSCCCCCSC
T ss_pred EEEEccCCCCCCc
Confidence 9999997765433
No 13
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=147.61 Aligned_cols=84 Identities=14% Similarity=0.207 Sum_probs=79.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
.++.++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+|+++|||||+|.+.++|++|+..|||..|+|+.|+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~---~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~ 79 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEIL---LHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIH 79 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEE---ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEE---ECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 4567899999999999999999999999999999999 6888999999999999999999999999999999999999
Q ss_pred EEeccCC
Q psy17497 272 LGWGKSV 278 (806)
Q Consensus 272 V~~ak~~ 278 (806)
|.|+...
T Consensus 80 V~~a~~~ 86 (110)
T 3s8s_A 80 AQLDIKG 86 (110)
T ss_dssp EEECSTT
T ss_pred EEECCCC
Confidence 9999654
No 14
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.67 E-value=5.5e-17 Score=144.11 Aligned_cols=82 Identities=16% Similarity=0.307 Sum_probs=75.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCC-CeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhC-CceeCCeeEEE
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYG-PLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLN-GKDVQSYEMKL 272 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG-~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~Ln-G~~l~Gr~LrV 272 (806)
+++|||+|||+.+|+++|+.+|++|| .|.+|+|+ ++..+|+++|||||+|.+.++|.+|++.|+ +..++|++|+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~---~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V 77 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLM---RNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSM 77 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSS---SCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEE---ecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEE
Confidence 47899999999999999999999999 79999999 688899999999999999999999999875 56799999999
Q ss_pred EeccCCC
Q psy17497 273 GWGKSVP 279 (806)
Q Consensus 273 ~~ak~~~ 279 (806)
.||++.+
T Consensus 78 ~~a~~~~ 84 (91)
T 2lxi_A 78 HYSDPKP 84 (91)
T ss_dssp ECCCSCC
T ss_pred EEcCCCC
Confidence 9998754
No 15
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.2e-16 Score=138.47 Aligned_cols=84 Identities=21% Similarity=0.493 Sum_probs=78.6
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCee
Q psy17497 190 SGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYE 269 (806)
Q Consensus 190 ~~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~ 269 (806)
...+..++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+++++|||||+|.+.++|.+|+..|||..|+|+.
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~---~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 87 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIM---KDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRV 87 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEEC---CCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEE---eCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 345667899999999999999999999999999999998 67778899999999999999999999999999999999
Q ss_pred EEEEecc
Q psy17497 270 MKLGWGK 276 (806)
Q Consensus 270 LrV~~ak 276 (806)
|+|.|||
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999986
No 16
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=137.73 Aligned_cols=83 Identities=22% Similarity=0.569 Sum_probs=75.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
+..++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+|+++|||||+|.+.++|+.|+..|||..++|+.|+|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~---~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 80 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVV---KDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 80 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE---ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEE---ecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 346899999999999999999999999999999998 56678899999999999999999999999999999999999
Q ss_pred EeccCC
Q psy17497 273 GWGKSV 278 (806)
Q Consensus 273 ~~ak~~ 278 (806)
.|+++.
T Consensus 81 ~~a~~k 86 (87)
T 3bs9_A 81 NWATRK 86 (87)
T ss_dssp EEEC--
T ss_pred EecCCC
Confidence 999864
No 17
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.67 E-value=2.6e-16 Score=135.71 Aligned_cols=81 Identities=26% Similarity=0.582 Sum_probs=76.6
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEe
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGW 274 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~ 274 (806)
+++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+|+++|||||+|.+.++|++|+..|||..++|+.|+|.|
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~---~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 77 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVM---WDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 77 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEE---ECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE---EcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEe
Confidence 4689999999999999999999999999999998 5667889999999999999999999999999999999999999
Q ss_pred ccCC
Q psy17497 275 GKSV 278 (806)
Q Consensus 275 ak~~ 278 (806)
+++.
T Consensus 78 a~~~ 81 (83)
T 3md1_A 78 AAKL 81 (83)
T ss_dssp CCCC
T ss_pred cCcC
Confidence 9864
No 18
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.66 E-value=1.5e-16 Score=143.09 Aligned_cols=82 Identities=18% Similarity=0.406 Sum_probs=76.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCC--eeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCc----eeC
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGP--LASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGK----DVQ 266 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~--I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~----~l~ 266 (806)
....||||+|||+.+|+++|+++|++||. |.+|+|+ +|..+|+++|||||+|.+.++|.+|++.|||. .|+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~---~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~ 83 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLI---KDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECC---CCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEE---ecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC
Confidence 44688999999999999999999999995 6789998 78899999999999999999999999999997 589
Q ss_pred CeeEEEEeccC
Q psy17497 267 SYEMKLGWGKS 277 (806)
Q Consensus 267 Gr~LrV~~ak~ 277 (806)
|++|+|.||++
T Consensus 84 Gr~i~V~~Aks 94 (95)
T 2lkz_A 84 GKTIGVDFAKS 94 (95)
T ss_dssp TEEEEEEECCC
T ss_pred CEEEEEEEccC
Confidence 99999999985
No 19
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.3e-16 Score=141.55 Aligned_cols=89 Identities=22% Similarity=0.387 Sum_probs=81.4
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCee
Q psy17497 190 SGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYE 269 (806)
Q Consensus 190 ~~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~ 269 (806)
..+...++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+++++|||||+|.+.++|++|+..|++ .|.|+.
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~---~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~ 87 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVI---TDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRK 87 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEES---CCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEE---EcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEE
Confidence 345668999999999999999999999999999999999 6778899999999999999999999999998 899999
Q ss_pred EEEEeccCCCCCC
Q psy17497 270 MKLGWGKSVPIPS 282 (806)
Q Consensus 270 LrV~~ak~~~~p~ 282 (806)
|+|.|++....+.
T Consensus 88 l~V~~a~~~~~~~ 100 (116)
T 2cqd_A 88 ANVNLAYLGAKPR 100 (116)
T ss_dssp CEEEESTTTCCCC
T ss_pred EEEEEcccCCCcc
Confidence 9999998765543
No 20
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.66 E-value=2.5e-16 Score=136.47 Aligned_cols=82 Identities=23% Similarity=0.414 Sum_probs=77.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
.+..++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+|+++|||||+|.+.++|.+|+..|||..++|+.|+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~---~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 80 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIP---LDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 80 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECC---EETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEE---ECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 3557999999999999999999999999999999998 5667889999999999999999999999999999999999
Q ss_pred EEecc
Q psy17497 272 LGWGK 276 (806)
Q Consensus 272 V~~ak 276 (806)
|.||+
T Consensus 81 v~~ak 85 (85)
T 3mdf_A 81 VNLAK 85 (85)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99986
No 21
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=7.9e-16 Score=137.59 Aligned_cols=84 Identities=19% Similarity=0.442 Sum_probs=78.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
....++|||+|||..+++++|+.+|++||.|.+|+|+ .+..+++++|||||+|.+.++|.+|+. |||..|+|+.|+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~---~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~ 82 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMI---YDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVE 82 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEEC---CCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---eCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEE
Confidence 4567899999999999999999999999999999999 677789999999999999999999998 999999999999
Q ss_pred EEeccCCC
Q psy17497 272 LGWGKSVP 279 (806)
Q Consensus 272 V~~ak~~~ 279 (806)
|.|+++..
T Consensus 83 V~~a~~~~ 90 (99)
T 2dgs_A 83 VKRAEPRD 90 (99)
T ss_dssp EEECCCCC
T ss_pred EEECCCCc
Confidence 99998654
No 22
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=6.2e-16 Score=136.92 Aligned_cols=85 Identities=31% Similarity=0.539 Sum_probs=79.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
+..++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+++++|||||+|.+.++|..|+..|||..|+|+.|+|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~---~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 79 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLM---KDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 79 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEE---CCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEe---ecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 457899999999999999999999999999999999 67778999999999999999999999999999999999999
Q ss_pred EeccCCCC
Q psy17497 273 GWGKSVPI 280 (806)
Q Consensus 273 ~~ak~~~~ 280 (806)
.|+++...
T Consensus 80 ~~a~~~~~ 87 (95)
T 2dnz_A 80 GHVTERLD 87 (95)
T ss_dssp EESSCCCC
T ss_pred EEcccccC
Confidence 99987543
No 23
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.7e-16 Score=140.08 Aligned_cols=86 Identities=20% Similarity=0.364 Sum_probs=79.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
.....++|||+|||+.+++++|+.+|++||.|..|.|+ .+..+++++|||||+|.+.++|++|+..|||..|+|+.|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~---~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIP---REPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECC---BCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---eCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 34557999999999999999999999999999999998 577789999999999999999999999999999999999
Q ss_pred EEEeccCCC
Q psy17497 271 KLGWGKSVP 279 (806)
Q Consensus 271 rV~~ak~~~ 279 (806)
+|.|++...
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2dnm_A 86 RVQVARYGR 94 (103)
T ss_dssp EEEECSSCC
T ss_pred EEEECCcCC
Confidence 999998754
No 24
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.65 E-value=3.4e-16 Score=144.64 Aligned_cols=80 Identities=29% Similarity=0.511 Sum_probs=73.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
.+++|||+|||+.+++++|+.+|++||.|.+|+|+ .+. +.++|||||+|.+.++|++|+..|||..|+|+.|+|.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~---~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~ 78 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV---CDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 78 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE---EET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEe---ecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 36789999999999999999999999999999998 343 4578999999999999999999999999999999999
Q ss_pred eccCC
Q psy17497 274 WGKSV 278 (806)
Q Consensus 274 ~ak~~ 278 (806)
|+++.
T Consensus 79 ~a~~~ 83 (115)
T 4f25_A 79 RFKSR 83 (115)
T ss_dssp ESSCC
T ss_pred ECCCc
Confidence 98764
No 25
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.1e-16 Score=138.93 Aligned_cols=86 Identities=23% Similarity=0.415 Sum_probs=80.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
....++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+++++|||||+|.+.++|+.|+..|||..|+|+.|+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~---~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIP---LDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 85 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECC---CCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEE---ecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 3457899999999999999999999999999999998 6777899999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q psy17497 272 LGWGKSVPI 280 (806)
Q Consensus 272 V~~ak~~~~ 280 (806)
|.|+++...
T Consensus 86 V~~a~~~~~ 94 (102)
T 2cqb_A 86 VNLAKPMRI 94 (102)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999987654
No 26
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.5e-16 Score=138.74 Aligned_cols=85 Identities=21% Similarity=0.455 Sum_probs=79.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
....++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+|+++|||||+|.+.++|..|+..|||..|+|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~---~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLA---KDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEE---ECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEe---ecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 4557999999999999999999999999999999998 5677889999999999999999999999999999999999
Q ss_pred EEeccCCC
Q psy17497 272 LGWGKSVP 279 (806)
Q Consensus 272 V~~ak~~~ 279 (806)
|.|+++..
T Consensus 89 v~~a~~~~ 96 (103)
T 2cq0_A 89 VEWAKPST 96 (103)
T ss_dssp EEESSCCC
T ss_pred EEECCCCC
Confidence 99998754
No 27
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.65 E-value=6.2e-16 Score=139.82 Aligned_cols=88 Identities=16% Similarity=0.380 Sum_probs=80.9
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCcee---
Q psy17497 189 DSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDV--- 265 (806)
Q Consensus 189 d~~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l--- 265 (806)
+..++..++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+|+++|||||+|.+.++|.+|+..|||..+
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~---~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 83 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL---KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPG 83 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECC---CCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE---ecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 3445668999999999999999999999999999999998 6777899999999999999999999999999987
Q ss_pred CCeeEEEEeccCCC
Q psy17497 266 QSYEMKLGWGKSVP 279 (806)
Q Consensus 266 ~Gr~LrV~~ak~~~ 279 (806)
.|+.|+|.|+++..
T Consensus 84 ~g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 84 MNRPIQVKPADSES 97 (106)
T ss_dssp CSSCCEEEECCCCS
T ss_pred CCceEEEEECCccc
Confidence 89999999998754
No 28
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.8e-16 Score=136.45 Aligned_cols=83 Identities=29% Similarity=0.437 Sum_probs=78.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
.+..++|||+|||+.+++++|+.+|++||.|..|+|+ .+..+++++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~---~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIV---YDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEE---ECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEE---EcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 4457899999999999999999999999999999998 5777889999999999999999999999999999999999
Q ss_pred EEeccC
Q psy17497 272 LGWGKS 277 (806)
Q Consensus 272 V~~ak~ 277 (806)
|.|++.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999975
No 29
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1e-15 Score=136.67 Aligned_cols=86 Identities=21% Similarity=0.327 Sum_probs=79.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
....++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+|+++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~---~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYP---IDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLH 81 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECC---CCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEE---ecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 3457899999999999999999999999999999998 5777899999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q psy17497 272 LGWGKSVPI 280 (806)
Q Consensus 272 V~~ak~~~~ 280 (806)
|.|+++...
T Consensus 82 V~~a~~~~~ 90 (99)
T 1whw_A 82 VLPSTIKKE 90 (99)
T ss_dssp EEECCCCST
T ss_pred EEEcCCCcc
Confidence 999987654
No 30
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.64 E-value=6.6e-16 Score=137.52 Aligned_cols=82 Identities=26% Similarity=0.517 Sum_probs=77.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEe
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGW 274 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~ 274 (806)
+++|||+|||..+++++|+.+|++||.|.+|+|+ .+..+|+++|||||+|.+.++|..|+..|||..++|+.|+|.|
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~---~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 78 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMM---FDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGY 78 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC---BCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---eCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 6899999999999999999999999999999998 5777899999999999999999999999999999999999999
Q ss_pred ccCCC
Q psy17497 275 GKSVP 279 (806)
Q Consensus 275 ak~~~ 279 (806)
+++.+
T Consensus 79 a~~~~ 83 (96)
T 2x1f_A 79 SSNSD 83 (96)
T ss_dssp CSCSS
T ss_pred cCCCC
Confidence 98764
No 31
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.64 E-value=6.7e-16 Score=138.25 Aligned_cols=83 Identities=16% Similarity=0.398 Sum_probs=77.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeE--------EEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCC
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLAS--------IKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNG 262 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~s--------VkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG 262 (806)
..+..++|||+|||+.+++++|+.+|++||.|.+ |+|+ .+..+|+++|||||+|.+.++|.+|+..|||
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~---~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLY---TDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEE---ECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEE---ecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3456899999999999999999999999999999 9998 5777899999999999999999999999999
Q ss_pred ceeCCeeEEEEecc
Q psy17497 263 KDVQSYEMKLGWGK 276 (806)
Q Consensus 263 ~~l~Gr~LrV~~ak 276 (806)
..|+|+.|+|.||+
T Consensus 86 ~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 86 KEFSGNPIKVSFAT 99 (99)
T ss_dssp CBSSSSBCEEEECC
T ss_pred CEeCCcEEEEEecC
Confidence 99999999999985
No 32
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.2e-16 Score=138.06 Aligned_cols=86 Identities=28% Similarity=0.524 Sum_probs=80.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
.+..++|||+|||+.+++++|+.+|++||.|..|+|+ .+..+++++|||||+|.+.++|..|+..|||..|+|+.|+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~---~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVV---KDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 85 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEEC---CCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEE---eCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 4457899999999999999999999999999999998 5777889999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q psy17497 272 LGWGKSVPI 280 (806)
Q Consensus 272 V~~ak~~~~ 280 (806)
|.|+++...
T Consensus 86 v~~a~~~~~ 94 (102)
T 1x5s_A 86 VDQAGKSSD 94 (102)
T ss_dssp EEEEECCCC
T ss_pred EEECCCCCC
Confidence 999987653
No 33
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.9e-16 Score=136.88 Aligned_cols=84 Identities=21% Similarity=0.502 Sum_probs=78.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEE-EEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASI-KIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sV-kI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
...++|||+|||+.+++++|+.+|++||.|..| +|+ .+..+|.++|||||+|.+.++|+.|+..|||..|+|+.|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~---~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 79 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIM---RDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPIT 79 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEEC---CCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEE---EcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 347899999999999999999999999999999 998 6777899999999999999999999999999999999999
Q ss_pred EEeccCCC
Q psy17497 272 LGWGKSVP 279 (806)
Q Consensus 272 V~~ak~~~ 279 (806)
|.|+++..
T Consensus 80 v~~a~~~~ 87 (96)
T 1x5t_A 80 VSYAFKKD 87 (96)
T ss_dssp EEESCCCC
T ss_pred EEEecccC
Confidence 99998754
No 34
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.64 E-value=1.1e-16 Score=141.16 Aligned_cols=81 Identities=16% Similarity=0.301 Sum_probs=72.0
Q ss_pred CEEEEcCCCCCCcHHHHHHHhccCC--CeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 196 TNLYLGNLNPKITEQQLMEIFGRYG--PLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 196 ttLfVgNLp~~vte~~L~~~F~~fG--~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
.+|||||||+.+++++|+.+|++|| .|.+|+|+ .+..+|+++|||||+|.+.++|++|+..|||..|+|+.|+|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~---~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFF---ENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEE---ECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEE---ecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEE
Confidence 4799999999999999999999999 99999999 677889999999999999999999999999999999999999
Q ss_pred eccCCC
Q psy17497 274 WGKSVP 279 (806)
Q Consensus 274 ~ak~~~ 279 (806)
++.+.+
T Consensus 79 ~~~~~~ 84 (90)
T 3p5t_L 79 PSNKLE 84 (90)
T ss_dssp CC----
T ss_pred ECCCCc
Confidence 998654
No 35
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.64 E-value=8.9e-16 Score=141.15 Aligned_cols=86 Identities=23% Similarity=0.433 Sum_probs=80.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
..+..++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+++++|||||+|.+.++|++|+..|||..|+|+.|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~---~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF---IDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEE---ECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---ECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34567899999999999999999999999999999999 577789999999999999999999999999999999999
Q ss_pred EEEeccCCC
Q psy17497 271 KLGWGKSVP 279 (806)
Q Consensus 271 rV~~ak~~~ 279 (806)
+|.|+++..
T Consensus 98 ~V~~a~~~~ 106 (115)
T 2cpz_A 98 KVQLKRSKN 106 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEEcCCCC
Confidence 999998754
No 36
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.3e-16 Score=140.28 Aligned_cols=85 Identities=19% Similarity=0.344 Sum_probs=79.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
...+++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+|+++|||||+|.+.++|+.|+..|||..|+|+.|+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~---~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 96 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLN---LDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 96 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEE---ECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEE---ecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 3457899999999999999999999999999999998 5777899999999999999999999999999999999999
Q ss_pred EEeccCCC
Q psy17497 272 LGWGKSVP 279 (806)
Q Consensus 272 V~~ak~~~ 279 (806)
|.|+++.+
T Consensus 97 V~~a~~~~ 104 (106)
T 1p27_B 97 VDWCFVRG 104 (106)
T ss_dssp EEESEESS
T ss_pred EEeecCCC
Confidence 99998653
No 37
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.2e-15 Score=137.97 Aligned_cols=86 Identities=20% Similarity=0.470 Sum_probs=79.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCc-cccCCcccEEEEEecChHHHHHHHHHh-CCceeCCe
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSD-EEKARGRNCGFVAFMNRKDGERALKYL-NGKDVQSY 268 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d-~~tg~~rg~aFV~F~~~~dAe~Ai~~L-nG~~l~Gr 268 (806)
.+...++|||+|||+.+++++|+.+|++||.|.+|+|+ .+ ..+|+++|||||+|.+.++|.+|+..| ||..|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~---~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLP---KKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECC---CCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEe---cCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 45567999999999999999999999999999999998 56 678899999999999999999999999 99999999
Q ss_pred eEEEEeccCCC
Q psy17497 269 EMKLGWGKSVP 279 (806)
Q Consensus 269 ~LrV~~ak~~~ 279 (806)
.|+|.|+++..
T Consensus 88 ~l~v~~a~~~~ 98 (107)
T 2cph_A 88 RLVLEWADSEV 98 (107)
T ss_dssp BCEEEECCCCC
T ss_pred EEEEEeCCCCC
Confidence 99999998754
No 38
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=7.6e-16 Score=137.29 Aligned_cols=85 Identities=24% Similarity=0.410 Sum_probs=77.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccc---cCCcccEEEEEecChHHHHHHHHHhCCceeCCee
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEE---KARGRNCGFVAFMNRKDGERALKYLNGKDVQSYE 269 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~---tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~ 269 (806)
+..++|||+|||+.+++++|+.+|++||.|.+|+|+ .+.. +++++|||||+|.+.++|+.|+..|||..|+|+.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~---~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTIS---KKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHK 79 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEE---EEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---ecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 457899999999999999999999999999999998 3444 5688999999999999999999999999999999
Q ss_pred EEEEeccCCCC
Q psy17497 270 MKLGWGKSVPI 280 (806)
Q Consensus 270 LrV~~ak~~~~ 280 (806)
|+|.|+++...
T Consensus 80 l~V~~a~~~~~ 90 (98)
T 2cpf_A 80 LEVRISERATK 90 (98)
T ss_dssp CEEECSSCSSC
T ss_pred EEEEEccCCCC
Confidence 99999987654
No 39
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.5e-15 Score=136.09 Aligned_cols=85 Identities=16% Similarity=0.347 Sum_probs=78.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
.....++|||+|||+.+++++|+.+|++||.|.+|+|+ .+. +|+++|||||+|.+.++|..|+..|||..|+|+.|
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~---~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 88 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLV---TNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENII 88 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEE---ECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEE---ECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34557899999999999999999999999999999998 455 78999999999999999999999999999999999
Q ss_pred EEEeccCCC
Q psy17497 271 KLGWGKSVP 279 (806)
Q Consensus 271 rV~~ak~~~ 279 (806)
+|.|+++.+
T Consensus 89 ~v~~a~~~~ 97 (100)
T 2do4_A 89 KVAISNSGP 97 (100)
T ss_dssp EEEECCCCS
T ss_pred EEEECCCCC
Confidence 999998653
No 40
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=6.3e-16 Score=138.06 Aligned_cols=86 Identities=23% Similarity=0.405 Sum_probs=79.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCee-EEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCee-
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLA-SIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYE- 269 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~-sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~- 269 (806)
...+++|||+|||+.+++++|+.+|++||.|. +|+|+ .+..+|+++|||||+|.+.++|++|+..|||..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~---~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 82 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKII---RNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATP 82 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEE---ECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEe---ecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCc
Confidence 34579999999999999999999999999999 99999 57778999999999999999999999999999999999
Q ss_pred ---EEEEeccCCCC
Q psy17497 270 ---MKLGWGKSVPI 280 (806)
Q Consensus 270 ---LrV~~ak~~~~ 280 (806)
|+|.|+++...
T Consensus 83 ~~~l~v~~a~~~~~ 96 (99)
T 2div_A 83 AKRFKLNYATYSGP 96 (99)
T ss_dssp CEECCEEETTCCSS
T ss_pred ceeEEEeecCCCCC
Confidence 99999987543
No 41
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=137.56 Aligned_cols=86 Identities=21% Similarity=0.414 Sum_probs=79.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
....++|||+|||+.+++++|+.+|++||.|..|+|+ .+..+++++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~---~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMP---KDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECC---BCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---ecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 4557899999999999999999999999999999998 5677899999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q psy17497 272 LGWGKSVPI 280 (806)
Q Consensus 272 V~~ak~~~~ 280 (806)
|.|+++...
T Consensus 89 v~~a~~~~~ 97 (105)
T 1x5u_A 89 VNKASAHNK 97 (105)
T ss_dssp EEETTTTSC
T ss_pred EEECCCCCc
Confidence 999987643
No 42
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.6e-15 Score=138.13 Aligned_cols=85 Identities=16% Similarity=0.397 Sum_probs=79.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhC------Ccee
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLN------GKDV 265 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~Ln------G~~l 265 (806)
....++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+|+++|||||+|.+.++|.+|+..|| |..|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~---~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVV---LHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECC---BCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEE---ecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 4457899999999999999999999999999999998 577789999999999999999999999999 9999
Q ss_pred CCeeEEEEeccCCC
Q psy17497 266 QSYEMKLGWGKSVP 279 (806)
Q Consensus 266 ~Gr~LrV~~ak~~~ 279 (806)
+|+.|+|.|+++..
T Consensus 89 ~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 89 DGRQLKVDLAVTRD 102 (111)
T ss_dssp SSCEEEEECCCCCC
T ss_pred cCEEEEEEECCCCc
Confidence 99999999998754
No 43
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.63 E-value=7e-16 Score=141.25 Aligned_cols=87 Identities=33% Similarity=0.579 Sum_probs=80.3
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCe
Q psy17497 189 DSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSY 268 (806)
Q Consensus 189 d~~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr 268 (806)
..+.+..++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+|+++|||||+|.+.++|.+|+..|||..|+|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~---~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~ 96 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLM---MDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 96 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEE---EETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---EcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3345667999999999999999999999999999999998 5667889999999999999999999999999999999
Q ss_pred eEEEEeccCC
Q psy17497 269 EMKLGWGKSV 278 (806)
Q Consensus 269 ~LrV~~ak~~ 278 (806)
.|+|.|+++.
T Consensus 97 ~l~V~~a~~k 106 (108)
T 2jrs_A 97 PMKVGHVTER 106 (108)
T ss_dssp CCEEECSCSS
T ss_pred EEEEEEcccC
Confidence 9999999864
No 44
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3.8e-15 Score=136.40 Aligned_cols=83 Identities=20% Similarity=0.368 Sum_probs=76.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
.+..++|||+|||+.+++++|+.+|++||.|.+|+|+ .+. +|+++|||||+|.+.++|+.|+..|||..|+|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~---~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADIL---EDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEE---ECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---ECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 4557899999999999999999999999999999998 344 488999999999999999999999999999999999
Q ss_pred EEeccCC
Q psy17497 272 LGWGKSV 278 (806)
Q Consensus 272 V~~ak~~ 278 (806)
|.|++..
T Consensus 88 v~~a~~~ 94 (114)
T 2do0_A 88 VKMDERA 94 (114)
T ss_dssp EEECSCC
T ss_pred EEEcccC
Confidence 9999764
No 45
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.63 E-value=1.1e-15 Score=141.12 Aligned_cols=83 Identities=28% Similarity=0.447 Sum_probs=77.6
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
..+..++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+|+++|||||+|.+.++|++|+..|||..|+|+.|
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~---~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVF---IDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEEC---CCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---eCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 45667999999999999999999999999999999999 677789999999999999999999999999999999999
Q ss_pred EEEecc
Q psy17497 271 KLGWGK 276 (806)
Q Consensus 271 rV~~ak 276 (806)
+|.|+|
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 999985
No 46
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.63 E-value=2.3e-16 Score=142.23 Aligned_cols=81 Identities=16% Similarity=0.253 Sum_probs=77.0
Q ss_pred CCCEEEEcCCCC------CCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCC
Q psy17497 194 CTTNLYLGNLNP------KITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQS 267 (806)
Q Consensus 194 ~~ttLfVgNLp~------~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~G 267 (806)
..++|||+|||+ .+++++|+.+|++||.|.+|+|+ .+..||+++|||||+|.+.++|.+|+..|||..|+|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~---~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFP---IDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECC---EETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEE---EcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 368899999999 99999999999999999999998 688889999999999999999999999999999999
Q ss_pred -eeEEEEeccC
Q psy17497 268 -YEMKLGWGKS 277 (806)
Q Consensus 268 -r~LrV~~ak~ 277 (806)
+.|+|.|+++
T Consensus 82 ~r~l~V~~a~~ 92 (100)
T 3ns6_A 82 KHRLFLYTMKD 92 (100)
T ss_dssp SCBCEEEESHH
T ss_pred CeEEEEEECch
Confidence 9999999864
No 47
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.62 E-value=1.2e-15 Score=138.99 Aligned_cols=85 Identities=18% Similarity=0.322 Sum_probs=79.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
....++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+|.++|||||+|.+.++|..|+..|||..|+|+.|+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~---~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLN---LDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECC---BCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---ecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 4557899999999999999999999999999999998 5777899999999999999999999999999999999999
Q ss_pred EEeccCCC
Q psy17497 272 LGWGKSVP 279 (806)
Q Consensus 272 V~~ak~~~ 279 (806)
|.|+++.+
T Consensus 100 V~~a~~~~ 107 (110)
T 1oo0_B 100 VDWCFVKG 107 (110)
T ss_dssp EEESEESS
T ss_pred EEEcccCC
Confidence 99998654
No 48
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.62 E-value=2.2e-15 Score=139.60 Aligned_cols=84 Identities=27% Similarity=0.555 Sum_probs=77.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
...++|||+|||+.+++++|+.+|++||.|.+|.|+ .+. +|+++|||||+|.+.++|+.|+..|||..|+|+.|+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~---~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V 80 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLI---KDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKV 80 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEE---CST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---ECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 346899999999999999999999999999999999 455 8899999999999999999999999999999999999
Q ss_pred EeccCCCC
Q psy17497 273 GWGKSVPI 280 (806)
Q Consensus 273 ~~ak~~~~ 280 (806)
.|+++...
T Consensus 81 ~~a~~~~~ 88 (116)
T 2fy1_A 81 EQAKKPSF 88 (116)
T ss_dssp EECCCSSC
T ss_pred EECCCCCC
Confidence 99986543
No 49
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2e-15 Score=135.98 Aligned_cols=85 Identities=25% Similarity=0.460 Sum_probs=78.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
.....++|||+|||+.+++++|+.+|++||.|.+|+|+ .+ +|.++|||||+|.+.++|..|+..|||..|+|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~---~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVM---ME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 85 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEE---EC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---cC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 34567899999999999999999999999999999998 34 78899999999999999999999999999999999
Q ss_pred EEEeccCCCC
Q psy17497 271 KLGWGKSVPI 280 (806)
Q Consensus 271 rV~~ak~~~~ 280 (806)
+|.|+++...
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2d9p_A 86 YVALAQRKEE 95 (103)
T ss_dssp EEEECSSCCC
T ss_pred EEEEeccccc
Confidence 9999987543
No 50
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.62 E-value=1.4e-15 Score=134.64 Aligned_cols=83 Identities=27% Similarity=0.496 Sum_probs=76.4
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
..+..++|||+|||+.+++++|+.+|++||.|.+|+|+ .+.. |+++|||||+|.+.++|.+|+..|||..|+|+.|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~---~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTIC---KDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEE---ECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---ECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEE
Confidence 34567899999999999999999999999999999998 3443 8889999999999999999999999999999999
Q ss_pred EEEeccC
Q psy17497 271 KLGWGKS 277 (806)
Q Consensus 271 rV~~ak~ 277 (806)
+|.|++.
T Consensus 88 ~V~~a~~ 94 (95)
T 2ywk_A 88 NVSGPSS 94 (95)
T ss_dssp EEECCCC
T ss_pred EEEEcCC
Confidence 9999875
No 51
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.8e-15 Score=133.41 Aligned_cols=85 Identities=22% Similarity=0.464 Sum_probs=77.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
.....++|||+|||+.+++++|+.+|++||.|.+|+|+ .+. +.++|||||+|.+.++|.+|+..|||..|+|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~---~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEII---FNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 85 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEE---CCT--TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---ecC--CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 45567999999999999999999999999999999999 333 2479999999999999999999999999999999
Q ss_pred EEEeccCCCC
Q psy17497 271 KLGWGKSVPI 280 (806)
Q Consensus 271 rV~~ak~~~~ 280 (806)
+|.|+++...
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cq3_A 86 EVNNATARVM 95 (103)
T ss_dssp EEEECCSSCC
T ss_pred EEEEcccCCC
Confidence 9999987654
No 52
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.61 E-value=2.7e-15 Score=135.34 Aligned_cols=84 Identities=17% Similarity=0.449 Sum_probs=77.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCC---e
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQS---Y 268 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~G---r 268 (806)
.+..++|||+|||+.+++++|+.+|++||.|.+|+|+ .+. +|.++|||||+|.+.++|++|+..|||..+.| +
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~---~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVL---RGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEE---ECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---ECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 4557999999999999999999999999999999998 444 68899999999999999999999999999998 9
Q ss_pred eEEEEeccCCC
Q psy17497 269 EMKLGWGKSVP 279 (806)
Q Consensus 269 ~LrV~~ak~~~ 279 (806)
.|+|.|+++..
T Consensus 88 ~l~V~~a~~~~ 98 (105)
T 2dnh_A 88 SLVVKFADTDK 98 (105)
T ss_dssp CCEEEESCSSC
T ss_pred cEEEEECccCc
Confidence 99999998754
No 53
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.3e-15 Score=139.81 Aligned_cols=81 Identities=10% Similarity=0.279 Sum_probs=73.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCC--ceeCCee
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNG--KDVQSYE 269 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG--~~l~Gr~ 269 (806)
++..++|||+|||+.+|+++|+.+|++||.|.+|+|+ +.+|||||+|.+.++|..|+..|++ ..|.|++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~---------~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~ 83 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML---------KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 83 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEE---------TTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---------cCCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 4567999999999999999999999999999999999 2379999999999999999998874 7899999
Q ss_pred EEEEeccCCCCC
Q psy17497 270 MKLGWGKSVPIP 281 (806)
Q Consensus 270 LrV~~ak~~~~p 281 (806)
|+|.|++...+.
T Consensus 84 l~V~~A~~~~~~ 95 (105)
T 1sjq_A 84 IYIQFSNHKELK 95 (105)
T ss_dssp CCBCCCSSSSCC
T ss_pred EEEEEcCCCCCC
Confidence 999999877654
No 54
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.61 E-value=1.8e-15 Score=133.09 Aligned_cols=84 Identities=21% Similarity=0.372 Sum_probs=77.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
.+..++|||+|||+.+++++|+.+|++||.|..|+|+ . .+|+++|||||+|.+.++|+.|+..|||..|+|+.|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~---~--~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 79 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIK---M--ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREID 79 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEE---E--SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---c--cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 4557899999999999999999999999999999998 2 3788999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q psy17497 272 LGWGKSVPI 280 (806)
Q Consensus 272 V~~ak~~~~ 280 (806)
|.|+++...
T Consensus 80 v~~a~~~~~ 88 (92)
T 2dgv_A 80 VRIDRNASG 88 (92)
T ss_dssp CEECSCCSS
T ss_pred EEEcCCCCC
Confidence 999987654
No 55
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.2e-15 Score=134.52 Aligned_cols=81 Identities=16% Similarity=0.271 Sum_probs=74.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHH----HHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCe
Q psy17497 193 PCTTNLYLGNLNPKITEQQLM----EIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSY 268 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~----~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr 268 (806)
.+.++|||+|||+.+++++|+ .+|++||.|.+|+|+ .+..+ +|||||+|.+.++|++|+..|||..|+|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~---~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr 80 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELS---PHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSK 80 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---SCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEE---eCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 346899999999999999999 999999999999998 44443 78999999999999999999999999999
Q ss_pred eEEEEeccCCC
Q psy17497 269 EMKLGWGKSVP 279 (806)
Q Consensus 269 ~LrV~~ak~~~ 279 (806)
.|+|.|+++.+
T Consensus 81 ~l~V~~a~~~~ 91 (96)
T 2dgx_A 81 KILVSLATGAS 91 (96)
T ss_dssp EEEEEECCCSS
T ss_pred EEEEEEcCCCC
Confidence 99999998654
No 56
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.61 E-value=1.4e-15 Score=132.30 Aligned_cols=82 Identities=24% Similarity=0.455 Sum_probs=75.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCC-cccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKAR-GRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~-~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
..++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..++. ++|||||+|.+.++|.+|+..|||..++|+.|+|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~---~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 79 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMP---VERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITA 79 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECC---EETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---eCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEE
Confidence 46899999999999999999999999999999998 4555555 8999999999999999999999999999999999
Q ss_pred EeccCC
Q psy17497 273 GWGKSV 278 (806)
Q Consensus 273 ~~ak~~ 278 (806)
.|+.+.
T Consensus 80 ~~a~~~ 85 (88)
T 4a8x_A 80 TAVLAP 85 (88)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 999753
No 57
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=136.24 Aligned_cols=84 Identities=23% Similarity=0.336 Sum_probs=77.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
..+..++|||+|||+.+++++|+.+|++||.|..+.++ .+..+|+++|||||+|.+.++|++|+..|||..|+|+.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 87 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCL---KYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEE---EECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEE---EECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 45567899999999999999999999999999988887 567788999999999999999999999999999999999
Q ss_pred EEEeccC
Q psy17497 271 KLGWGKS 277 (806)
Q Consensus 271 rV~~ak~ 277 (806)
+|.|++.
T Consensus 88 ~V~~a~~ 94 (98)
T 2cqp_A 88 KLVLGSG 94 (98)
T ss_dssp EEEESSC
T ss_pred EEEEcCC
Confidence 9999875
No 58
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=3.2e-15 Score=134.76 Aligned_cols=84 Identities=15% Similarity=0.267 Sum_probs=77.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
....++|||+|||+.+++++|+.+|++|| |.+|+|+ .+..+|+++|||||+|.+.++|++|+ .|||..|+|+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~---~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLV---RDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEE---ECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEe---ecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 44578999999999999999999999997 9999999 67788999999999999999999999 8999999999999
Q ss_pred EEeccCCCC
Q psy17497 272 LGWGKSVPI 280 (806)
Q Consensus 272 V~~ak~~~~ 280 (806)
|.|+++...
T Consensus 87 V~~a~~~~~ 95 (103)
T 2dng_A 87 VDIAEGRKQ 95 (103)
T ss_dssp EEECCCCCC
T ss_pred EEEecCCCC
Confidence 999987543
No 59
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.61 E-value=5e-15 Score=138.06 Aligned_cols=85 Identities=21% Similarity=0.296 Sum_probs=78.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
....++|||+|||+.+++++|+.+|++||.|.+|+|+ .+. +|+++|||||+|.+.++|..|+..|||..|+|+.|+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~---~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 107 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVD---YDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD 107 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEE---CCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE---ECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 4457899999999999999999999999999999999 565 889999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q psy17497 272 LGWGKSVPI 280 (806)
Q Consensus 272 V~~ak~~~~ 280 (806)
|.||.....
T Consensus 108 V~~a~~~~~ 116 (124)
T 2kt5_A 108 IQLVASQID 116 (124)
T ss_dssp EEEECCTTC
T ss_pred EEEeCCCCC
Confidence 999987543
No 60
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.1e-15 Score=136.93 Aligned_cols=86 Identities=23% Similarity=0.457 Sum_probs=79.5
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCee--------EEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCC
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLA--------SIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNG 262 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~--------sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG 262 (806)
.....++|||+|||+.+++++|+.+|++||.|. .|+|+ .+..+|+++|||||+|.+.++|.+|+..|||
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~---~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIY---LDKETGKPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECC---BCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEE---EeCCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence 345679999999999999999999999999999 59988 5777899999999999999999999999999
Q ss_pred ceeCCeeEEEEeccCCC
Q psy17497 263 KDVQSYEMKLGWGKSVP 279 (806)
Q Consensus 263 ~~l~Gr~LrV~~ak~~~ 279 (806)
..|+|+.|+|.|+++..
T Consensus 88 ~~~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 88 KDFQGSKLKVSLARKKP 104 (113)
T ss_dssp CEETTEECEEECSSCCC
T ss_pred CccCCCEEEEEECCCCC
Confidence 99999999999998754
No 61
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.9e-15 Score=136.08 Aligned_cols=84 Identities=24% Similarity=0.393 Sum_probs=77.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhcc-CCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCce-eCCeeE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGR-YGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKD-VQSYEM 270 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~-fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~-l~Gr~L 270 (806)
...++|||+|||+.+++++|+.+|++ ||.|.+|+|+ .+. +|+++|||||+|.+.++|..|+..|||.. |+|+.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~---~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVV---LDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEE---ECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEE---ECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 45688999999999999999999999 9999999999 566 88999999999999999999999999999 999999
Q ss_pred EEEeccCCCC
Q psy17497 271 KLGWGKSVPI 280 (806)
Q Consensus 271 rV~~ak~~~~ 280 (806)
+|.|+++...
T Consensus 83 ~v~~a~~~~~ 92 (104)
T 2dhg_A 83 RLSVAIPKAS 92 (104)
T ss_dssp CCCBCCCCCS
T ss_pred EEEEccCCCc
Confidence 9999976543
No 62
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.2e-15 Score=136.14 Aligned_cols=86 Identities=22% Similarity=0.321 Sum_probs=79.6
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCee
Q psy17497 190 SGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYE 269 (806)
Q Consensus 190 ~~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~ 269 (806)
..++..++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+++++|||||+|.+.++|.+|+.. ||..|+|+.
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~---~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 86 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIM---KDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRN 86 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEE---ECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEe---eCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEE
Confidence 345668999999999999999999999999999999999 5777899999999999999999999998 999999999
Q ss_pred EEEEeccCCC
Q psy17497 270 MKLGWGKSVP 279 (806)
Q Consensus 270 LrV~~ak~~~ 279 (806)
|+|.|+++..
T Consensus 87 l~V~~a~~~~ 96 (105)
T 2dh8_A 87 IDPKPCTPRG 96 (105)
T ss_dssp EBCCCSCCSS
T ss_pred EEEEEccCCC
Confidence 9999998654
No 63
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=6.5e-15 Score=132.56 Aligned_cols=84 Identities=29% Similarity=0.591 Sum_probs=76.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
.....++|||+|||+.+++++|+.+|++||.|.+|+|+ .+. +.++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~---~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMI---TEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 85 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEE---CCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEE---ecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeE
Confidence 34567999999999999999999999999999999999 343 3368999999999999999999999999999999
Q ss_pred EEEeccCCC
Q psy17497 271 KLGWGKSVP 279 (806)
Q Consensus 271 rV~~ak~~~ 279 (806)
+|.|+++..
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2cqi_A 86 KVNWATTPS 94 (103)
T ss_dssp EEEECCCTT
T ss_pred EEEECCCCc
Confidence 999998754
No 64
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=143.14 Aligned_cols=86 Identities=19% Similarity=0.406 Sum_probs=79.4
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeE--EEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCc---
Q psy17497 189 DSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLAS--IKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGK--- 263 (806)
Q Consensus 189 d~~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~s--VkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~--- 263 (806)
...+...++|||+|||+.+|+++|+.+|++||.|.. |+|+ .+..+|+++|||||+|.+. +|.+|+..|||.
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~---~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~ 92 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVI---KDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPP 92 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECC---BCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEE---EcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCC
Confidence 344556789999999999999999999999999977 9999 6888999999999999999 999999999999
Q ss_pred -eeCCeeEEEEeccCC
Q psy17497 264 -DVQSYEMKLGWGKSV 278 (806)
Q Consensus 264 -~l~Gr~LrV~~ak~~ 278 (806)
.|+|+.|+|.|+++.
T Consensus 93 ~~~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 93 LTIDGKTINVEFAKGS 108 (131)
T ss_dssp CCGGGCCCCCEECCCS
T ss_pred ccCCCEEEEEEECCCC
Confidence 999999999999875
No 65
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.1e-15 Score=129.68 Aligned_cols=77 Identities=30% Similarity=0.585 Sum_probs=71.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHh-CCceeCCee
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYL-NGKDVQSYE 269 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~L-nG~~l~Gr~ 269 (806)
.++..++|||+|||+.+++++|+.+|++||.|.+|+|+ +++|||||+|.+.++|..|+..| +|..++|+.
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~---------~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVV---------QRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEE---------GGGTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEE---------CCCCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 35667899999999999999999999999999999998 35799999999999999999999 999999999
Q ss_pred EEEEecc
Q psy17497 270 MKLGWGK 276 (806)
Q Consensus 270 LrV~~ak 276 (806)
|+|.||+
T Consensus 79 l~v~~ak 85 (85)
T 2ytc_A 79 LNVKWGR 85 (85)
T ss_dssp CCEEECC
T ss_pred EEEEecC
Confidence 9999986
No 66
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5.7e-16 Score=134.51 Aligned_cols=82 Identities=27% Similarity=0.434 Sum_probs=76.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
+.+++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+|+++|||||+|.+.++|..|+..|||..|+|+.|++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~---~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 79 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAI---LDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQ 79 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEE---CCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---ecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEee
Confidence 457899999999999999999999999999999999 57778999999999999999999999999999999999999
Q ss_pred EeccC
Q psy17497 273 GWGKS 277 (806)
Q Consensus 273 ~~ak~ 277 (806)
.|+++
T Consensus 80 ~~~~s 84 (85)
T 1x4e_A 80 SGPSS 84 (85)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 88653
No 67
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.60 E-value=3.3e-15 Score=130.43 Aligned_cols=81 Identities=16% Similarity=0.310 Sum_probs=76.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
..++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+|+++|||||+|.+.++|++|+ .|||..++|+.|+|.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~---~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~ 80 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTIL---CDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVI 80 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEE---ESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---ecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEE
Confidence 35899999999999999999999999999999998 57778999999999999999999999 999999999999999
Q ss_pred eccCC
Q psy17497 274 WGKSV 278 (806)
Q Consensus 274 ~ak~~ 278 (806)
|+++.
T Consensus 81 ~a~~~ 85 (89)
T 3ucg_A 81 PKRTN 85 (89)
T ss_dssp ETTTT
T ss_pred EccCC
Confidence 99863
No 68
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.60 E-value=3.4e-15 Score=135.21 Aligned_cols=81 Identities=21% Similarity=0.341 Sum_probs=76.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
....++|||+|||+.+++++|+.+|++||.|.+|+|+ .+. +|+++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~---~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVH---YDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEE---ECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---ECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4557899999999999999999999999999999998 455 889999999999999999999999999999999999
Q ss_pred EEecc
Q psy17497 272 LGWGK 276 (806)
Q Consensus 272 V~~ak 276 (806)
|.|+.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99986
No 69
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.60 E-value=3.6e-15 Score=130.05 Aligned_cols=80 Identities=18% Similarity=0.368 Sum_probs=74.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
....++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+|+++|||||+|.+.++|.+|+. ++|..|+|+.|+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~---~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~ 83 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIK---MDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVID 83 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEE---ECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEe---ecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEE
Confidence 4567899999999999999999999999999999998 577789999999999999999999996 588899999999
Q ss_pred EEec
Q psy17497 272 LGWG 275 (806)
Q Consensus 272 V~~a 275 (806)
|.||
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 70
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.60 E-value=3.2e-15 Score=135.95 Aligned_cols=80 Identities=18% Similarity=0.343 Sum_probs=73.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCce--eCCee
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKD--VQSYE 269 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~--l~Gr~ 269 (806)
.+++++|||+|||+.+|+++|+.+|++||.|.+|+|+ +.+|||||+|.+.++|..|+..|||.. |.|++
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~---------~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~ 88 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM---------PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHP 88 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE---------TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE---------cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcE
Confidence 3557899999999999999999999999999999998 357999999999999999999999885 78999
Q ss_pred EEEEeccCCCC
Q psy17497 270 MKLGWGKSVPI 280 (806)
Q Consensus 270 LrV~~ak~~~~ 280 (806)
|+|.|++...+
T Consensus 89 i~V~~S~~k~l 99 (100)
T 3r27_A 89 AFVNYSTSQKI 99 (100)
T ss_dssp EEEEECSCSCC
T ss_pred EEEEecccccc
Confidence 99999987644
No 71
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.59 E-value=2.7e-15 Score=139.91 Aligned_cols=87 Identities=18% Similarity=0.322 Sum_probs=80.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
..+..++|||+|||+.+++++|..+|++||.|.+|.|+ .+..+|.++|||||+|.+.++|+.|+..|||..|+|+.|
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~---~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 94 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLN---LDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 94 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC---BCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---ecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 34557899999999999999999999999999999998 577789999999999999999999999999999999999
Q ss_pred EEEeccCCCC
Q psy17497 271 KLGWGKSVPI 280 (806)
Q Consensus 271 rV~~ak~~~~ 280 (806)
+|.|+++...
T Consensus 95 ~v~~a~~~~~ 104 (126)
T 3ex7_B 95 SVDWCFVRGP 104 (126)
T ss_dssp EEEESEESSS
T ss_pred EEEEecCCCC
Confidence 9999986543
No 72
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.5e-15 Score=133.41 Aligned_cols=83 Identities=18% Similarity=0.338 Sum_probs=76.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCcccc-CCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEK-ARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~t-g~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
....++|||+|||+.+++++|+.+|+.|| |.+|+|+ .+..+ |+++|||||+|.+.++|++|+ .|||..|+|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~---~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLP---REPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECC---BCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEe---cCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 34578999999999999999999999999 9999998 56666 899999999999999999999 999999999999
Q ss_pred EEEeccCCC
Q psy17497 271 KLGWGKSVP 279 (806)
Q Consensus 271 rV~~ak~~~ 279 (806)
+|.|+++..
T Consensus 87 ~V~~a~~~~ 95 (104)
T 1wi8_A 87 RVDVADQAQ 95 (104)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCCC
Confidence 999998754
No 73
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=6.6e-15 Score=129.57 Aligned_cols=83 Identities=22% Similarity=0.268 Sum_probs=76.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
.....++|||+|||+.+++++|+.+|+.| .|.+|+|+ .+ .+|+++|||||+|.+.++|.+|+. |||..|+|+.|
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~---~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i 79 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIV---RN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYI 79 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEE---EC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEE---EC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEE
Confidence 34557899999999999999999999999 99999998 45 678999999999999999999999 99999999999
Q ss_pred EEEeccCCC
Q psy17497 271 KLGWGKSVP 279 (806)
Q Consensus 271 rV~~ak~~~ 279 (806)
+|.|+++.+
T Consensus 80 ~v~~a~~~~ 88 (91)
T 2dgw_A 80 EVFREKSGP 88 (91)
T ss_dssp EEEEESSCC
T ss_pred EEEECCcCC
Confidence 999998653
No 74
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.59 E-value=3.8e-15 Score=141.23 Aligned_cols=86 Identities=30% Similarity=0.517 Sum_probs=80.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
.....++|||+|||..+++++|+.+|+.||.|.+|+|+ .+..+|+++|||||+|.+.++|.+|+..|||..|+|+.|
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~---~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 114 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIV---CDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRL 114 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEE---EETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---EcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 34567899999999999999999999999999999999 577788999999999999999999999999999999999
Q ss_pred EEEeccCCC
Q psy17497 271 KLGWGKSVP 279 (806)
Q Consensus 271 rV~~ak~~~ 279 (806)
+|.|+++..
T Consensus 115 ~v~~a~~~~ 123 (139)
T 1u6f_A 115 KVALAASGH 123 (139)
T ss_dssp EEEESSCCC
T ss_pred EEEECCCCC
Confidence 999998754
No 75
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=8.7e-16 Score=138.21 Aligned_cols=84 Identities=24% Similarity=0.516 Sum_probs=78.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
...++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+|+++|||||+|.+.++|..|+..|||..++|+.|+|
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~---~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 82 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLV---YDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 82 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEE---EETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEE---eCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 446899999999999999999999999999999999 56678899999999999999999999999999999999999
Q ss_pred EeccCCC
Q psy17497 273 GWGKSVP 279 (806)
Q Consensus 273 ~~ak~~~ 279 (806)
.|+++..
T Consensus 83 ~~a~~~~ 89 (104)
T 1p1t_A 83 DNAASEK 89 (104)
T ss_dssp EETTCTT
T ss_pred EeCCCcc
Confidence 9998654
No 76
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.8e-15 Score=135.66 Aligned_cols=84 Identities=23% Similarity=0.452 Sum_probs=76.4
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
.....++|||+|||+.+++++|+.+|++||.|.+|+|+ .+. +.++|||||+|.+.++|++|+..|||..|+|+.|
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~---~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEII---FNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEEC---CBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEE---ECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 45567999999999999999999999999999999998 343 4589999999999999999999999999999999
Q ss_pred EEEeccCCC
Q psy17497 271 KLGWGKSVP 279 (806)
Q Consensus 271 rV~~ak~~~ 279 (806)
+|.|+++..
T Consensus 100 ~V~~a~~~~ 108 (109)
T 2err_A 100 EVNNATARV 108 (109)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCc
Confidence 999998753
No 77
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=3.9e-15 Score=136.56 Aligned_cols=85 Identities=16% Similarity=0.369 Sum_probs=76.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHH---HHhccCCCeeEEEEeCCCCccc---cCCcccEEEEEecChHHHHHHHHHhCCcee
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLM---EIFGRYGPLASIKIMWPRSDEE---KARGRNCGFVAFMNRKDGERALKYLNGKDV 265 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~---~~F~~fG~I~sVkI~~Pr~d~~---tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l 265 (806)
....++|||+|||+.+++++|. .+|++||.|.+|+|+ .+.. +++++|||||+|.+.++|++|+..|||..|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~---~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVIN---NSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEE---CCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEe---cCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 3457899999999999999999 999999999999998 3444 346679999999999999999999999999
Q ss_pred CCeeEEEEeccCCC
Q psy17497 266 QSYEMKLGWGKSVP 279 (806)
Q Consensus 266 ~Gr~LrV~~ak~~~ 279 (806)
+|+.|+|.||++.+
T Consensus 89 ~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 89 DGRTLKASLGTTKY 102 (111)
T ss_dssp TTEEEEEESCCCCS
T ss_pred CCEEEEEEeccccc
Confidence 99999999998765
No 78
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.9e-15 Score=137.64 Aligned_cols=81 Identities=12% Similarity=0.215 Sum_probs=75.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
+...++|||||||+.+|+++|+.+|++||.|.+|+|+ .+.. |+++|||||+|.+.++|..|+. ++|..++|+.|+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~---~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~ 82 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR---RTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLL 82 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEE---CCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEE---ECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEE
Confidence 4457899999999999999999999999999999999 5665 8999999999999999999998 999999999999
Q ss_pred EEeccC
Q psy17497 272 LGWGKS 277 (806)
Q Consensus 272 V~~ak~ 277 (806)
|.|++.
T Consensus 83 V~~~~~ 88 (103)
T 1s79_A 83 ILFKDD 88 (103)
T ss_dssp EEEHHH
T ss_pred EEEchH
Confidence 999754
No 79
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.59 E-value=3.5e-15 Score=141.18 Aligned_cols=85 Identities=27% Similarity=0.442 Sum_probs=79.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
.+..++|||+|||+.+++++|+.+|++||.|..|+|+ .+..+|+++|||||+|.+.++|++|+..|||..|+|+.|+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~---~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIV---YDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEE---CCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---ecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 4457899999999999999999999999999999999 6778899999999999999999999999999999999999
Q ss_pred EEeccCCC
Q psy17497 272 LGWGKSVP 279 (806)
Q Consensus 272 V~~ak~~~ 279 (806)
|.|+++..
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998643
No 80
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=9.4e-15 Score=129.00 Aligned_cols=78 Identities=27% Similarity=0.468 Sum_probs=72.5
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
.....++|||+|||+.+++++|+.+|++||.|.+|+|+ ++||||+|.+.++|.+|+..|||..|+|+.|
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 74 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRM 74 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----------SSEEEEEESCHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 45567999999999999999999999999999999998 3599999999999999999999999999999
Q ss_pred EEEeccCCC
Q psy17497 271 KLGWGKSVP 279 (806)
Q Consensus 271 rV~~ak~~~ 279 (806)
+|.|+++..
T Consensus 75 ~V~~a~~~~ 83 (92)
T 2dgt_A 75 HVQLSTSRL 83 (92)
T ss_dssp EEEESSCCC
T ss_pred EEEEccCCC
Confidence 999998754
No 81
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.1e-14 Score=132.59 Aligned_cols=83 Identities=25% Similarity=0.516 Sum_probs=75.6
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
.....++|||+|||+.+++++|+.+|++||.|..|+|+. +++++|||||+|.+.++|++|+..|||..|+|+.|
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 91 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN------RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRL 91 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC------SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE------CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 345678999999999999999999999999999999972 24578999999999999999999999999999999
Q ss_pred EEEeccCCC
Q psy17497 271 KLGWGKSVP 279 (806)
Q Consensus 271 rV~~ak~~~ 279 (806)
+|.|+++..
T Consensus 92 ~V~~a~~~~ 100 (109)
T 1x4a_A 92 RVEFPRSGR 100 (109)
T ss_dssp EEECCCCCC
T ss_pred EEEEcccCC
Confidence 999998754
No 82
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.7e-15 Score=134.12 Aligned_cols=87 Identities=13% Similarity=0.268 Sum_probs=78.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCC-eeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhC--CceeCCee
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGP-LASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLN--GKDVQSYE 269 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~-I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~Ln--G~~l~Gr~ 269 (806)
...++|||+|||+.+++++|+.+|++||. |.+|.|+. .+..+|+++|||||+|.+.++|..|+..|| +..++|+.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~--~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA--SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCS--SSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEc--cCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 45789999999999999999999999998 99998862 467788999999999999999999999996 58999999
Q ss_pred EEEEeccCCCCC
Q psy17497 270 MKLGWGKSVPIP 281 (806)
Q Consensus 270 LrV~~ak~~~~p 281 (806)
|+|.|+++...+
T Consensus 84 l~V~~a~~~~~~ 95 (109)
T 2dis_A 84 IAVDWAEPEIDV 95 (109)
T ss_dssp CEEEESCSSCST
T ss_pred EEEEEcCCCCCc
Confidence 999999876543
No 83
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.58 E-value=1.3e-14 Score=130.87 Aligned_cols=78 Identities=24% Similarity=0.472 Sum_probs=72.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
..+.++|||+|||+.+++++|+.+|++||.|..|+|+ ++||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 76 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIE 76 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEE
Confidence 4457899999999999999999999999999999987 46999999999999999999999999999999
Q ss_pred EEeccCCCC
Q psy17497 272 LGWGKSVPI 280 (806)
Q Consensus 272 V~~ak~~~~ 280 (806)
|.|+++...
T Consensus 77 v~~a~~~~~ 85 (103)
T 2dgu_A 77 IVFAKPPDQ 85 (103)
T ss_dssp EEECCCCCC
T ss_pred EEEcCCCcc
Confidence 999987654
No 84
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.58 E-value=3e-15 Score=146.38 Aligned_cols=82 Identities=16% Similarity=0.281 Sum_probs=76.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCC--CeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYG--PLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG--~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
..++|||||||+.+++++|+.+|++|| .|.+|+|+ .|..+|+++|||||+|.+.++|++||..|||..|+|+.|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~---~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~ 130 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFA---ENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVD 130 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEE---ECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEE---ecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeE
Confidence 468999999999999999999999999 99999999 6888999999999999999999999999999999999999
Q ss_pred EEeccCC
Q psy17497 272 LGWGKSV 278 (806)
Q Consensus 272 V~~ak~~ 278 (806)
|.|+.+.
T Consensus 131 V~~a~~~ 137 (156)
T 3n9u_C 131 VRPATRQ 137 (156)
T ss_dssp EEECCHH
T ss_pred EEEcCCC
Confidence 9999653
No 85
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.58 E-value=5.8e-15 Score=139.47 Aligned_cols=82 Identities=22% Similarity=0.403 Sum_probs=76.6
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
..+..++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+|+++|||||+|.+.++|.+|+..|||..|+|+.|
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~---~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIP---LDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECC---CCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEe---ecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 45568999999999999999999999999999999998 677789999999999999999999999999999999999
Q ss_pred EEEec
Q psy17497 271 KLGWG 275 (806)
Q Consensus 271 rV~~a 275 (806)
+|.||
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99986
No 86
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.4e-15 Score=137.97 Aligned_cols=82 Identities=17% Similarity=0.322 Sum_probs=77.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
...++|||+|||..+++++|+.+|++||.|..|+|+ .+..+|+++|||||+|.+.++|++|+ .|||..|+|+.|+|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~---~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 98 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRII---SDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIV 98 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEC---CSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEE---ecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEE
Confidence 346899999999999999999999999999999999 67788999999999999999999999 99999999999999
Q ss_pred EeccCC
Q psy17497 273 GWGKSV 278 (806)
Q Consensus 273 ~~ak~~ 278 (806)
.|+++.
T Consensus 99 ~~a~~~ 104 (114)
T 2cq4_A 99 QASQAE 104 (114)
T ss_dssp EEHHHH
T ss_pred EecCCC
Confidence 999764
No 87
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.2e-14 Score=130.93 Aligned_cols=85 Identities=20% Similarity=0.254 Sum_probs=77.4
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
.....++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+|+++|||||+|.+.++|.+|+. ++..|+|+.|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~---~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l 85 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVK---KDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWC 85 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEE---ECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEE---ecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEE
Confidence 34567899999999999999999999999999999998 577789999999999999999999998 5789999999
Q ss_pred EEEeccCCCC
Q psy17497 271 KLGWGKSVPI 280 (806)
Q Consensus 271 rV~~ak~~~~ 280 (806)
+|.|+++..-
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cqg_A 86 DCKLPNSKQS 95 (103)
T ss_dssp EEECCCTTCC
T ss_pred EEEecCCCCc
Confidence 9999987654
No 88
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.58 E-value=6.2e-15 Score=142.60 Aligned_cols=85 Identities=22% Similarity=0.402 Sum_probs=79.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
....++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+|+++|||||+|.+.++|..|+..|||..|+|+.|+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~---~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 143 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIP---RDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 143 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECC---CCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEe---ecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 4557899999999999999999999999999999998 6778899999999999999999999999999999999999
Q ss_pred EEeccCCC
Q psy17497 272 LGWGKSVP 279 (806)
Q Consensus 272 V~~ak~~~ 279 (806)
|.|+++..
T Consensus 144 v~~a~~~~ 151 (158)
T 2kn4_A 144 VQMARYGR 151 (158)
T ss_dssp EEEECCSS
T ss_pred EEECCCCC
Confidence 99998753
No 89
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=4.4e-15 Score=140.57 Aligned_cols=82 Identities=11% Similarity=0.274 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHH----HHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCC
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLM----EIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQS 267 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~----~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~G 267 (806)
.+.+++|||+|||+.+++++|+ .+|++||.|.+|.+. .+|+++|||||+|.+.++|..|+..|||..|.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~------~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD------LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC------CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec------cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 4457899999999999999866 799999999999886 257889999999999999999999999999999
Q ss_pred eeEEEEeccCCC
Q psy17497 268 YEMKLGWGKSVP 279 (806)
Q Consensus 268 r~LrV~~ak~~~ 279 (806)
++|+|.||+...
T Consensus 100 r~l~V~~a~~~~ 111 (127)
T 2a3j_A 100 NPLVITFSETPQ 111 (127)
T ss_dssp SCCEEEECCCCC
T ss_pred CEEEEEEccCcc
Confidence 999999998653
No 90
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.58 E-value=1.9e-15 Score=133.70 Aligned_cols=84 Identities=23% Similarity=0.314 Sum_probs=75.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
+.+..++|||+|||+.+++++|+.+|++||.|..+.++ .+..+|+++|||||+|.+.++|++|+..|||..|+|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~---~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l 87 (95)
T 2ek1_A 11 GKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCL---KYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (95)
T ss_dssp ----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEE---EECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEE---EeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEE
Confidence 34556899999999999999999999999999988888 567788999999999999999999999999999999999
Q ss_pred EEEeccC
Q psy17497 271 KLGWGKS 277 (806)
Q Consensus 271 rV~~ak~ 277 (806)
+|.++.+
T Consensus 88 ~v~~a~s 94 (95)
T 2ek1_A 88 KLSGPSS 94 (95)
T ss_dssp EEECCC-
T ss_pred EEEeccC
Confidence 9998764
No 91
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.58 E-value=8.5e-16 Score=134.85 Aligned_cols=81 Identities=23% Similarity=0.443 Sum_probs=73.3
Q ss_pred CEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEec
Q psy17497 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWG 275 (806)
Q Consensus 196 ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~a 275 (806)
++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+|+++|||||+|.+.+ |..|+..|||..++|+.|+|.||
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~---~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLI---YDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEEC---CCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEE---EcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEc
Confidence 689999999999999999999999999999998 67778999999999999999 99999999999999999999999
Q ss_pred cCCCC
Q psy17497 276 KSVPI 280 (806)
Q Consensus 276 k~~~~ 280 (806)
.+...
T Consensus 78 ~~~~~ 82 (90)
T 2ki2_A 78 NPKKS 82 (90)
T ss_dssp -----
T ss_pred CCCCC
Confidence 87543
No 92
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=4.5e-15 Score=133.17 Aligned_cols=77 Identities=25% Similarity=0.516 Sum_probs=72.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
.+..++|||+|||..+++++|+.+|++||.|.+|+|+ +++|||||+|.+.++|..|+..|||..|+|+.|+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 94 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLR 94 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3457899999999999999999999999999999998 5689999999999999999999999999999999
Q ss_pred EEeccC
Q psy17497 272 LGWGKS 277 (806)
Q Consensus 272 V~~ak~ 277 (806)
|.|+++
T Consensus 95 V~~a~~ 100 (101)
T 2la4_A 95 TGWGKE 100 (101)
T ss_dssp CCBCCC
T ss_pred EEeccC
Confidence 999986
No 93
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.4e-14 Score=131.82 Aligned_cols=81 Identities=12% Similarity=0.296 Sum_probs=73.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHh--CCceeCCee
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYL--NGKDVQSYE 269 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~L--nG~~l~Gr~ 269 (806)
.+++++|||+|||+.+++++|+.+|++||.|.+|.|+ +.+|||||+|.+.++|..|+..| ++..|.|++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~---------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILML---------KGKNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEE---------TTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---------CCCCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 4567899999999999999999999999999999998 23899999999999999999977 567899999
Q ss_pred EEEEeccCCCCC
Q psy17497 270 MKLGWGKSVPIP 281 (806)
Q Consensus 270 LrV~~ak~~~~p 281 (806)
|+|.|++...+.
T Consensus 83 l~V~~a~~~~~~ 94 (101)
T 2cq1_A 83 IYIQYSNHKELK 94 (101)
T ss_dssp CEEEECSCSSCC
T ss_pred EEEEEcCcccCc
Confidence 999999976654
No 94
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.57 E-value=5.4e-15 Score=131.18 Aligned_cols=75 Identities=19% Similarity=0.193 Sum_probs=70.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
..++-||||||++.+|+++|+.+|.+||+|.+++++ .++|||||+|.+.++|+.|++.|||..+.|++|+|
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~---------~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V 75 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPY---------LNQGIALCKYTTREEANKAQMALNNCVLANTTIFA 75 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEE---------TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEc---------CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 446889999999999999999999999999999998 36899999999999999999999999999999999
Q ss_pred Eecc
Q psy17497 273 GWGK 276 (806)
Q Consensus 273 ~~ak 276 (806)
.+|.
T Consensus 76 ~~A~ 79 (89)
T 2wbr_A 76 ESPS 79 (89)
T ss_dssp ECCC
T ss_pred EECC
Confidence 9984
No 95
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.57 E-value=8e-15 Score=134.27 Aligned_cols=84 Identities=23% Similarity=0.405 Sum_probs=75.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
....++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+|+++|||||+|.+.++|.+|+..+ |..|+|+.|+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~---~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVM---RDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEC---CCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEE---ECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 4457899999999999999999999999999999999 67788999999999999999999999976 5899999999
Q ss_pred EEeccCCC
Q psy17497 272 LGWGKSVP 279 (806)
Q Consensus 272 V~~ak~~~ 279 (806)
|.|+++..
T Consensus 98 V~~a~~~~ 105 (109)
T 2rs2_A 98 PKVAFPRR 105 (109)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99998654
No 96
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.57 E-value=2.2e-15 Score=127.74 Aligned_cols=75 Identities=19% Similarity=0.372 Sum_probs=71.1
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEec
Q psy17497 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWG 275 (806)
Q Consensus 197 tLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~a 275 (806)
+|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+|+++|||||+|.+.++|++|+. |||..++|+.|+|.||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~---~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLM---FDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCC---BCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEE---ecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999998 566789999999999999999999997 9999999999999986
No 97
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=2.5e-15 Score=127.64 Aligned_cols=76 Identities=25% Similarity=0.481 Sum_probs=72.4
Q ss_pred CEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEec
Q psy17497 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWG 275 (806)
Q Consensus 196 ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~a 275 (806)
++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+|+++|||||+|.+.++|++|+..++ ..++|+.|+|.||
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~---~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVM---RDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEE---CCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe---cCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999998 677789999999999999999999999999 9999999999997
No 98
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.3e-14 Score=132.61 Aligned_cols=80 Identities=14% Similarity=0.261 Sum_probs=72.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCc--eeCCee
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGK--DVQSYE 269 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~--~l~Gr~ 269 (806)
.+++++|||+|||+.+++++|+.+|++||.|.+|.|+ +.+|||||+|.+.++|..|+..|++. .|.|++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~---------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~ 82 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMM---------PFKRQALVEFENIDSAKECVTFAADVPVYIAGQQ 82 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEE---------TTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---------CCCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 4567899999999999999999999999999999998 24799999999999999999988765 489999
Q ss_pred EEEEeccCCCC
Q psy17497 270 MKLGWGKSVPI 280 (806)
Q Consensus 270 LrV~~ak~~~~ 280 (806)
|+|.|++...+
T Consensus 83 l~V~~a~~~~~ 93 (104)
T 1wex_A 83 AFFNYSTSKRI 93 (104)
T ss_dssp CEEEECSSSSC
T ss_pred EEEEEccCccc
Confidence 99999987654
No 99
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.2e-14 Score=127.77 Aligned_cols=78 Identities=24% Similarity=0.472 Sum_probs=72.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
.+..++|||+|||+.+++++|+.+|++||.|.+|+|+ +|||||+|.+.++|+.|+..|||..|+|+.|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 73 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNIN 73 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEE
Confidence 4557899999999999999999999999999999997 58999999999999999999999999999999
Q ss_pred EEeccCCCC
Q psy17497 272 LGWGKSVPI 280 (806)
Q Consensus 272 V~~ak~~~~ 280 (806)
|.|+++...
T Consensus 74 v~~a~~~~~ 82 (90)
T 2dnq_A 74 VEASKNKSK 82 (90)
T ss_dssp EECSSCCCC
T ss_pred EEECCCCCC
Confidence 999987643
No 100
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.1e-14 Score=132.72 Aligned_cols=80 Identities=24% Similarity=0.515 Sum_probs=74.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
.+..++|||+|||+.+++++|+.+|++||.|.+|+|+. .+|||||+|.+.++|..|+..|||..|+|+.|+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~---------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP---------EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 92 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeC---------CCCEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 45578999999999999999999999999999999982 279999999999999999999999999999999
Q ss_pred EEeccCCCC
Q psy17497 272 LGWGKSVPI 280 (806)
Q Consensus 272 V~~ak~~~~ 280 (806)
|.|+++.+.
T Consensus 93 v~~a~~~~~ 101 (109)
T 1x4g_A 93 CYWGKESPD 101 (109)
T ss_dssp EECCCCCCS
T ss_pred EEecCCCCC
Confidence 999987653
No 101
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=7.8e-15 Score=133.80 Aligned_cols=77 Identities=14% Similarity=0.240 Sum_probs=70.3
Q ss_pred CCCEEEEcCCCC-CCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCc--eeCCeeE
Q psy17497 194 CTTNLYLGNLNP-KITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGK--DVQSYEM 270 (806)
Q Consensus 194 ~~ttLfVgNLp~-~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~--~l~Gr~L 270 (806)
++++|||+|||+ .+++++|+.+|++||.|.+|.|+ +.+|||||+|.+.++|..|+..|||. .|.|++|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~---------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLIL---------NKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEEC---------SSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEE---------cCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 478999999999 99999999999999999999998 34689999999999999999999865 5999999
Q ss_pred EEEeccCCC
Q psy17497 271 KLGWGKSVP 279 (806)
Q Consensus 271 rV~~ak~~~ 279 (806)
+|.||+...
T Consensus 85 ~V~~a~~~~ 93 (102)
T 1x4d_A 85 RVHLSQKYK 93 (102)
T ss_dssp EEEEECCCT
T ss_pred EEEECCCCC
Confidence 999998643
No 102
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.57 E-value=8.3e-15 Score=133.05 Aligned_cols=81 Identities=12% Similarity=0.221 Sum_probs=74.5
Q ss_pred CCCCEEEEcCCCCCC------cHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeC
Q psy17497 193 PCTTNLYLGNLNPKI------TEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQ 266 (806)
Q Consensus 193 p~~ttLfVgNLp~~v------te~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~ 266 (806)
...++|||+|||+.+ ++++|+.+|++||.|.+|+|+ ..+|+++|||||+|.+.++|..|+..|||..|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-----~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-----EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-----CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-----CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 346899999999999 789999999999999999887 357899999999999999999999999999999
Q ss_pred Ce-eEEEEeccCC
Q psy17497 267 SY-EMKLGWGKSV 278 (806)
Q Consensus 267 Gr-~LrV~~ak~~ 278 (806)
|+ .|+|.|+...
T Consensus 88 g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 88 KQHTFRVNLFTDF 100 (105)
T ss_dssp TTCEEEEECSCCC
T ss_pred CCceEEEEEcchH
Confidence 98 9999998754
No 103
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=4.2e-15 Score=136.71 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=73.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
+...++|||+|||+.+++++|+.+|++||.|.+|.|+ +.+|||||+|.+.++|+.|+..|||..|+|+.|+
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~---------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 77 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP---------EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLY 77 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC---------SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe---------CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Confidence 3346899999999999999999999999999999987 3678999999999999999999999999999999
Q ss_pred EEeccCCCC
Q psy17497 272 LGWGKSVPI 280 (806)
Q Consensus 272 V~~ak~~~~ 280 (806)
|.|++....
T Consensus 78 V~~a~~~~~ 86 (111)
T 1whx_A 78 LEWAPIGVF 86 (111)
T ss_dssp EEEEETTTT
T ss_pred EEECCCCcc
Confidence 999986543
No 104
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.56 E-value=1.3e-14 Score=140.62 Aligned_cols=85 Identities=28% Similarity=0.505 Sum_probs=79.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
....++|||+|||+.+++++|..+|++||.|.+|+|+ .+..++.++|||||+|.+.++|+.|+..|||..|+|+.|+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~---~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 112 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMG---LDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR 112 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE---ECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---ecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3457899999999999999999999999999999998 5777889999999999999999999999999999999999
Q ss_pred EEeccCCC
Q psy17497 272 LGWGKSVP 279 (806)
Q Consensus 272 V~~ak~~~ 279 (806)
|.|+++..
T Consensus 113 V~~a~~~~ 120 (156)
T 1h2v_Z 113 TDWDAGFK 120 (156)
T ss_dssp EEEESCCC
T ss_pred EEECCCCC
Confidence 99998654
No 105
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.56 E-value=2.6e-15 Score=135.12 Aligned_cols=82 Identities=18% Similarity=0.341 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCcc-ccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDE-EKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~-~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
....++|||+|||..+++++|+.+|++|| |.+|+|+ .+. .+|+++|||||+|.+.++|.+|+ .|||..|+|+.|
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~---~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLP---REPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECS---CCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEE---ecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 34579999999999999999999999999 9999998 555 58999999999999999999999 899999999999
Q ss_pred EEEeccCC
Q psy17497 271 KLGWGKSV 278 (806)
Q Consensus 271 rV~~ak~~ 278 (806)
+|.|+++.
T Consensus 91 ~V~~a~~~ 98 (100)
T 2j76_E 91 RVDVADQA 98 (100)
T ss_dssp CCEECCCS
T ss_pred EEEeccCC
Confidence 99999864
No 106
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1e-14 Score=136.74 Aligned_cols=82 Identities=10% Similarity=0.282 Sum_probs=74.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCC--ceeCCee
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNG--KDVQSYE 269 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG--~~l~Gr~ 269 (806)
.+++++|||+|||+.+++++|+.+|++||.|.+|+|+ +.+|||||+|.+.++|..|+..|++ ..|.|++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~---------~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML---------KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 98 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEE---------GGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe---------CCCCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence 4557899999999999999999999999999999998 2379999999999999999999984 6899999
Q ss_pred EEEEeccCCCCCC
Q psy17497 270 MKLGWGKSVPIPS 282 (806)
Q Consensus 270 LrV~~ak~~~~p~ 282 (806)
|+|.|++...+.+
T Consensus 99 l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 99 IYIQFSNHKELKT 111 (119)
T ss_dssp CEEEECSSSSCCC
T ss_pred EEEEEccCCCCCc
Confidence 9999998776543
No 107
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.56 E-value=3.8e-15 Score=141.87 Aligned_cols=86 Identities=22% Similarity=0.387 Sum_probs=79.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
....++|||+|||+.+++++|+.+|++||.|..|+|+ .+..+++++|||||+|.+.++|++|+..|||..|.|+.|+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~---~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIP---RDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECC---CCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---ecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4457899999999999999999999999999999998 5777899999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q psy17497 272 LGWGKSVPI 280 (806)
Q Consensus 272 V~~ak~~~~ 280 (806)
|.|+++...
T Consensus 121 V~~a~~~~~ 129 (135)
T 2lea_A 121 VQMARYGRP 129 (135)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCCC
Confidence 999987544
No 108
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-14 Score=129.91 Aligned_cols=79 Identities=23% Similarity=0.445 Sum_probs=73.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
.+..++|||+|||+.+++++|+.+|++||.|..|+|+ +.+|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---------~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 82 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH---------KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLR 82 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE---------TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe---------cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEE
Confidence 4567899999999999999999999999999999998 3479999999999999999999999999999999
Q ss_pred EEeccCCC
Q psy17497 272 LGWGKSVP 279 (806)
Q Consensus 272 V~~ak~~~ 279 (806)
|.|+++..
T Consensus 83 v~~a~~~~ 90 (99)
T 2cpj_A 83 VRFACHSA 90 (99)
T ss_dssp EEESSCCS
T ss_pred EEEcCCCC
Confidence 99998753
No 109
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.56 E-value=5.8e-15 Score=131.10 Aligned_cols=82 Identities=26% Similarity=0.452 Sum_probs=74.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHH----HHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCC
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLM----EIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQS 267 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~----~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~G 267 (806)
.+.+++|||+|||+.+++++|+ .+|++||.|.+|+|+ .+|.++|||||+|.+.++|..|+..|||..++|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 78 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS------RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYD 78 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC------HHHHHTTCEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE------cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 4567899999999999999999 999999999999886 256788999999999999999999999999999
Q ss_pred eeEEEEeccCCC
Q psy17497 268 YEMKLGWGKSVP 279 (806)
Q Consensus 268 r~LrV~~ak~~~ 279 (806)
+.|+|.|+++.+
T Consensus 79 ~~l~v~~a~~~~ 90 (97)
T 1nu4_A 79 KPMRIQYAKTDS 90 (97)
T ss_dssp EECEEEECSSCC
T ss_pred cEEEEEEccCCC
Confidence 999999998753
No 110
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.56 E-value=9.4e-15 Score=143.22 Aligned_cols=85 Identities=18% Similarity=0.322 Sum_probs=78.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
....++|||+|||+.+++++|..+|++||.|..|.|+ .+..+|.++|||||+|.+.++|..||..|||..|.|+.|+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLN---LDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE---ECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEE---ecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3457899999999999999999999999999999999 5777899999999999999999999999999999999999
Q ss_pred EEeccCCC
Q psy17497 272 LGWGKSVP 279 (806)
Q Consensus 272 V~~ak~~~ 279 (806)
|.|+++.+
T Consensus 146 V~~a~~~~ 153 (165)
T 1rk8_A 146 VDWCFVKG 153 (165)
T ss_dssp EEESEECC
T ss_pred EEEecCCC
Confidence 99998754
No 111
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.6e-14 Score=128.66 Aligned_cols=79 Identities=22% Similarity=0.454 Sum_probs=72.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeC--Cee
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQ--SYE 269 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~--Gr~ 269 (806)
.+.+++|||+|||+.+++++|+.+|++||.|.+|.|+ ..+|||||+|.+.++|+.|+..|||..|. |+.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~---------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~ 84 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHV---------KGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRR 84 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEEC---------SSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe---------CCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcE
Confidence 3457899999999999999999999999999999998 22789999999999999999999999999 999
Q ss_pred EEEEeccCCC
Q psy17497 270 MKLGWGKSVP 279 (806)
Q Consensus 270 LrV~~ak~~~ 279 (806)
|+|.|+++.+
T Consensus 85 l~V~~a~~~~ 94 (97)
T 1why_A 85 LRVDFAKSGP 94 (97)
T ss_dssp CEEEECCCCC
T ss_pred EEEEECCCCC
Confidence 9999998753
No 112
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.6e-14 Score=127.00 Aligned_cols=77 Identities=23% Similarity=0.431 Sum_probs=71.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
.+..++|||+|||+.+++++|+.+|++||.|.+|+|+ ++||||+|.+.++|.+|+..|||..++|+.|+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 74 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRIN 74 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----------SSCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 4557899999999999999999999999999999998 35999999999999999999999999999999
Q ss_pred EEeccCCC
Q psy17497 272 LGWGKSVP 279 (806)
Q Consensus 272 V~~ak~~~ 279 (806)
|.|+++..
T Consensus 75 v~~a~~~~ 82 (90)
T 2dnp_A 75 VELSTKGQ 82 (90)
T ss_dssp EEESCCCC
T ss_pred EEECCCCC
Confidence 99998754
No 113
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-14 Score=133.62 Aligned_cols=84 Identities=20% Similarity=0.336 Sum_probs=78.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
...++|||+|||+.+++++|+.+|++||.|..|+|+ .+..+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~---~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V 100 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVM---RDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEP 100 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEE---CCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---ECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEE
Confidence 346899999999999999999999999999999999 6778899999999999999999999987 999999999999
Q ss_pred EeccCCCC
Q psy17497 273 GWGKSVPI 280 (806)
Q Consensus 273 ~~ak~~~~ 280 (806)
.|+++...
T Consensus 101 ~~a~~~~~ 108 (116)
T 1x4b_A 101 KRAVAREE 108 (116)
T ss_dssp ECCSSCCC
T ss_pred EECCCCcc
Confidence 99987643
No 114
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.4e-14 Score=128.35 Aligned_cols=83 Identities=20% Similarity=0.330 Sum_probs=74.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
.+...++|||+|||+.+++++|+.+|++||.| +|+ .+ .+++++|||||+|.+.++|++|+..|||..|+|+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~---~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 83 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVP---QN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 83 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECC---BC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEE---EC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEE
Confidence 34567999999999999999999999999977 555 23 578899999999999999999999999999999999
Q ss_pred EEEeccCCCC
Q psy17497 271 KLGWGKSVPI 280 (806)
Q Consensus 271 rV~~ak~~~~ 280 (806)
+|.|+++...
T Consensus 84 ~v~~a~~~~~ 93 (101)
T 2fc9_A 84 RLELQGPRGS 93 (101)
T ss_dssp EEEECSSCCC
T ss_pred EEEEcCCCCC
Confidence 9999987643
No 115
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.55 E-value=1.9e-14 Score=129.09 Aligned_cols=77 Identities=25% Similarity=0.427 Sum_probs=71.7
Q ss_pred CCCCCCEEEEcCCCC-CCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCee
Q psy17497 191 GDPCTTNLYLGNLNP-KITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYE 269 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~-~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~ 269 (806)
..+.+++|||+|||+ .+++++|+.+|++||.|.+|+|. +|||||+|.+.++|..|+..|||..++|+.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----------NAFGFIQFDNPQSVRDAIEXESQEMNFGKK 86 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----------SSEEEEEESSHHHHHHHHHHHTTSEETTEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----------CCEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 456689999999998 99999999999999999999985 689999999999999999999999999999
Q ss_pred EEEEeccCC
Q psy17497 270 MKLGWGKSV 278 (806)
Q Consensus 270 LrV~~ak~~ 278 (806)
|+|.|++..
T Consensus 87 l~V~~a~~~ 95 (97)
T 2xnq_A 87 LILEVSSSN 95 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCCC
Confidence 999999864
No 116
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.6e-14 Score=132.39 Aligned_cols=83 Identities=24% Similarity=0.418 Sum_probs=75.6
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCcee-----
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDV----- 265 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l----- 265 (806)
.+...++|||+|||+.+++++|+.+|++||.|.+|+|+ .+. +|.++|||||+|.+.++|+.|+..|||..|
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~---~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~ 96 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRIL---RDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPG 96 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEE---ECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---ECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcc
Confidence 34567899999999999999999999999999999998 455 789999999999999999999999999999
Q ss_pred ---CCeeEEEEeccC
Q psy17497 266 ---QSYEMKLGWGKS 277 (806)
Q Consensus 266 ---~Gr~LrV~~ak~ 277 (806)
.|++|+|.|+++
T Consensus 97 ~~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 97 VSAPTEPLLCKFSGP 111 (114)
T ss_dssp SCCCSSCBEEEECCC
T ss_pred ccCCCCceeEEccCC
Confidence 577899999874
No 117
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.55 E-value=1.1e-14 Score=135.29 Aligned_cols=81 Identities=19% Similarity=0.321 Sum_probs=76.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
..++|||+|||..+++++|+.+|++||.|.+|+|+ .+..+|+++|||||+|.+.++|..|+ .|||..|+|+.|+|.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~---~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 110 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITIL---CDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVL 110 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEE---EECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---ecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEE
Confidence 36899999999999999999999999999999998 56678999999999999999999999 799999999999999
Q ss_pred eccCC
Q psy17497 274 WGKSV 278 (806)
Q Consensus 274 ~ak~~ 278 (806)
|+++.
T Consensus 111 ~a~~~ 115 (124)
T 2jwn_A 111 PKRTN 115 (124)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 99854
No 118
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.54 E-value=1.9e-14 Score=131.76 Aligned_cols=79 Identities=25% Similarity=0.540 Sum_probs=72.9
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCee
Q psy17497 190 SGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYE 269 (806)
Q Consensus 190 ~~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~ 269 (806)
..+...++|||+|||+.+++++|+.+|++||.|..|+|+ +|||||+|.+.++|+.|+..|||..++|+.
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----------NGFAFVEFEEAESAAKAIEEVHGKSFANQP 94 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----------TTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 345678999999999999999999999999999999987 689999999999999999999999999999
Q ss_pred EEEEeccCCC
Q psy17497 270 MKLGWGKSVP 279 (806)
Q Consensus 270 LrV~~ak~~~ 279 (806)
|+|.|+++.+
T Consensus 95 l~V~~a~~~~ 104 (108)
T 2jvo_A 95 LEVVYSKLPA 104 (108)
T ss_dssp CEEESCSCCC
T ss_pred EEEEEecCCC
Confidence 9999998754
No 119
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.6e-14 Score=128.92 Aligned_cols=79 Identities=15% Similarity=0.365 Sum_probs=72.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
.+..++|||+|||+.+++++|+.+|++||.|. +.++ +++++|||||+|.+.++|+.|+..|||..|+|+.|+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~-------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLT-------WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLR 87 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEE-------EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEE-------cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 34578999999999999999999999999997 6776 247889999999999999999999999999999999
Q ss_pred EEeccCC
Q psy17497 272 LGWGKSV 278 (806)
Q Consensus 272 V~~ak~~ 278 (806)
|.|+++.
T Consensus 88 V~~a~~~ 94 (97)
T 2e5j_A 88 VALARQQ 94 (97)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9999864
No 120
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=6.7e-14 Score=127.54 Aligned_cols=78 Identities=17% Similarity=0.250 Sum_probs=72.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCC----
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQS---- 267 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~G---- 267 (806)
....++|||+|||+.+++++|+.+|++||.|..|+|+. + |||||+|.+.++|+.||..|||..|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~---~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~ 81 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR---D-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 81 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEET---T-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEec---C-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCc
Confidence 34578999999999999999999999999999999982 2 899999999999999999999999999
Q ss_pred -eeEEEEeccCCC
Q psy17497 268 -YEMKLGWGKSVP 279 (806)
Q Consensus 268 -r~LrV~~ak~~~ 279 (806)
+.|+|.|+++..
T Consensus 82 ~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 82 TAYIRVKVDGPRS 94 (108)
T ss_dssp EEEEEEEESSCCS
T ss_pred ceEEEEEeCCCCC
Confidence 999999998743
No 121
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.54 E-value=1.3e-14 Score=134.17 Aligned_cols=80 Identities=13% Similarity=0.044 Sum_probs=72.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCC-CeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYG-PLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG-~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
.+..++|||+|||+.+++++|+.+|++|| .|..+.|+. ++++|||||+|.+.++|+.|+..|||..|+|+.|
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-------~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i 97 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-------RDFDGTGALEFPSEEILVEALERLNNIEFRGSVI 97 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-------CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-------CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 34568999999999999999999999999 899999861 2578999999999999999999999999999999
Q ss_pred EEEeccCC
Q psy17497 271 KLGWGKSV 278 (806)
Q Consensus 271 rV~~ak~~ 278 (806)
+|.+++..
T Consensus 98 ~V~~a~~~ 105 (111)
T 2jvr_A 98 TVERDDNP 105 (111)
T ss_dssp EEEESCC-
T ss_pred EEEECCCC
Confidence 99998753
No 122
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=5.7e-14 Score=125.62 Aligned_cols=77 Identities=30% Similarity=0.456 Sum_probs=71.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccC--CCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCee
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRY--GPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYE 269 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~f--G~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~ 269 (806)
.+..++|||+|||+.+++++|+.+|++| |.|.+|+++ +|||||+|.+.++|..|+..|||..|+|+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4457899999999999999999999999 899999876 579999999999999999999999999999
Q ss_pred EEEEeccCCC
Q psy17497 270 MKLGWGKSVP 279 (806)
Q Consensus 270 LrV~~ak~~~ 279 (806)
|+|.|+++..
T Consensus 81 l~v~~a~~~~ 90 (99)
T 2cpd_A 81 IEVTLAKPVD 90 (99)
T ss_dssp EEEECCCCCC
T ss_pred EEEEECCCCC
Confidence 9999998754
No 123
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.8e-14 Score=132.73 Aligned_cols=82 Identities=13% Similarity=0.203 Sum_probs=75.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCe-eEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPL-ASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I-~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
....++|||+|||+.+++++|+.+|+.||.| .+|+|+ .+. +|+++|||||+|.+.++|++||.. ||..|+|+.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~---~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i 86 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVL---VDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREA 86 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEEC---CCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEE---ECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEE
Confidence 3456889999999999999999999999999 899998 566 899999999999999999999986 9999999999
Q ss_pred EEEeccCC
Q psy17497 271 KLGWGKSV 278 (806)
Q Consensus 271 rV~~ak~~ 278 (806)
+|.|+...
T Consensus 87 ~v~~a~~~ 94 (114)
T 2cpy_A 87 FVHVVTLE 94 (114)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99999754
No 124
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.53 E-value=6.5e-15 Score=127.12 Aligned_cols=74 Identities=14% Similarity=0.277 Sum_probs=68.1
Q ss_pred CCEEEEcCCCCCC------cHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCe
Q psy17497 195 TTNLYLGNLNPKI------TEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSY 268 (806)
Q Consensus 195 ~ttLfVgNLp~~v------te~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr 268 (806)
+++|||+|||+.+ ++++|+.+|++||.|.+|+|+ ..+|+++|||||+|.+.++|..|+..|||..++|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-----EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-----CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-----CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 3789999999999 789999999999999999976 35789999999999999999999999999999999
Q ss_pred -eEEEE
Q psy17497 269 -EMKLG 273 (806)
Q Consensus 269 -~LrV~ 273 (806)
+|+|.
T Consensus 76 ~~l~V~ 81 (81)
T 2krb_A 76 HTFRVN 81 (81)
T ss_dssp SCCCCC
T ss_pred eeEEeC
Confidence 88763
No 125
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.8e-14 Score=129.31 Aligned_cols=83 Identities=14% Similarity=0.196 Sum_probs=75.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeE-EEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLAS-IKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~s-VkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
....++|||+|||+.+++++|+.+|++||.|.. |+|+ .+ .+|+++|||||+|.+.++|++|+.. ||..|+|+.|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~---~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i 86 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLP---VD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYI 86 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECC---BC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEE---EC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEE
Confidence 455789999999999999999999999999987 8887 45 6899999999999999999999997 9999999999
Q ss_pred EEEeccCCC
Q psy17497 271 KLGWGKSVP 279 (806)
Q Consensus 271 rV~~ak~~~ 279 (806)
+|.++....
T Consensus 87 ~v~~~~~~~ 95 (104)
T 1wg5_A 87 EIFKSSRAE 95 (104)
T ss_dssp EEEEECTTT
T ss_pred EEEECCHHH
Confidence 999987544
No 126
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.53 E-value=2.4e-14 Score=131.40 Aligned_cols=80 Identities=26% Similarity=0.482 Sum_probs=73.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
+.+++|||+|||+.+++++|+.+|++||.|.+|.|+ .+ +.++|||||+|.+.++|.+|+..|||..++|+.|+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~---~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 79 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVG---NT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVV 79 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEE---CS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEe---eC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 346899999999999999999999999999999998 22 456899999999999999999999999999999999
Q ss_pred EeccCC
Q psy17497 273 GWGKSV 278 (806)
Q Consensus 273 ~~ak~~ 278 (806)
.|+++.
T Consensus 80 ~~a~~~ 85 (115)
T 3lqv_A 80 LYYNAN 85 (115)
T ss_dssp EECCHH
T ss_pred EEecCC
Confidence 998753
No 127
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=4.5e-14 Score=126.64 Aligned_cols=82 Identities=23% Similarity=0.436 Sum_probs=74.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
....++|||+|||+.+++++|+.+|+.|+ .|+++ .+..+++++|||||+|.+.++|+.|+..|||..|+|+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~---~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIV---TDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEE---ECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEE---ecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 45678999999999999999999999874 67777 4667889999999999999999999999999999999999
Q ss_pred EEeccCCC
Q psy17497 272 LGWGKSVP 279 (806)
Q Consensus 272 V~~ak~~~ 279 (806)
|.|+++..
T Consensus 86 V~~a~~~~ 93 (102)
T 2fc8_A 86 LDWAKPKG 93 (102)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 99998754
No 128
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.9e-14 Score=128.24 Aligned_cols=78 Identities=24% Similarity=0.392 Sum_probs=71.7
Q ss_pred CCCCCEEEEcCCCC-CCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 192 DPCTTNLYLGNLNP-KITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 192 dp~~ttLfVgNLp~-~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
.+.+++|||+|||+ .+++++|+.+|++||.|.+|+|. +|||||+|.+.++|..|+..|||..+.|+.|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 75 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----------NAFGFIQFDNPQSVRDAIECESQEMNFGKKL 75 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTB
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 35578999999999 99999999999999999999986 6899999999999999999999999999999
Q ss_pred EEEeccCCCC
Q psy17497 271 KLGWGKSVPI 280 (806)
Q Consensus 271 rV~~ak~~~~ 280 (806)
+|.|+++...
T Consensus 76 ~V~~a~~~~~ 85 (96)
T 2kvi_A 76 ILEVSSSNAR 85 (96)
T ss_dssp CEEEEECCCC
T ss_pred EEEEcCcCCC
Confidence 9999987654
No 129
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=2.3e-14 Score=128.46 Aligned_cols=76 Identities=28% Similarity=0.522 Sum_probs=71.6
Q ss_pred CEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEec
Q psy17497 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWG 275 (806)
Q Consensus 196 ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~a 275 (806)
|+|||+|||+.+++++|+.+|++||.|.+|+|+. + ++|||||+|.+.++|..|+..|||..++|+.|+|.|+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIAR---N-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 72 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEES---S-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee---C-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEc
Confidence 6899999999999999999999999999999982 2 6899999999999999999999999999999999999
Q ss_pred cCCC
Q psy17497 276 KSVP 279 (806)
Q Consensus 276 k~~~ 279 (806)
++.+
T Consensus 73 ~~~~ 76 (101)
T 2hvz_A 73 TGMP 76 (101)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 8765
No 130
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.52 E-value=5e-15 Score=132.86 Aligned_cols=81 Identities=30% Similarity=0.384 Sum_probs=74.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
..++|||+|||+.+++++|+.+|++||.|.. .++ .+..+|+++|||||+|.+.++|++|+. |||..|.|+.|+|.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~---~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAV---VDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCC---CEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEE---ecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 4689999999999999999999999999988 566 577789999999999999999999998 99999999999999
Q ss_pred eccCCC
Q psy17497 274 WGKSVP 279 (806)
Q Consensus 274 ~ak~~~ 279 (806)
|+++..
T Consensus 91 ~a~~~~ 96 (101)
T 1fj7_A 91 KPKGRD 96 (101)
T ss_dssp CCSCCC
T ss_pred EcCCCC
Confidence 998653
No 131
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.8e-14 Score=133.71 Aligned_cols=79 Identities=15% Similarity=0.206 Sum_probs=71.5
Q ss_pred CCCCCEEEEcCCCCC-CcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCC--ceeCCe
Q psy17497 192 DPCTTNLYLGNLNPK-ITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNG--KDVQSY 268 (806)
Q Consensus 192 dp~~ttLfVgNLp~~-vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG--~~l~Gr 268 (806)
.+.+++|||+|||+. +++++|+.+|++||.|.+|+|+ +.+|||||+|.+.++|..|+..||+ ..|.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~---------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr 92 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM---------RMKSQAFIEMETREDAMAMVDHCLKKALWFQGR 92 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE---------TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe---------cCCCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 455889999999998 9999999999999999999998 4589999999999999999998864 569999
Q ss_pred eEEEEeccCCC
Q psy17497 269 EMKLGWGKSVP 279 (806)
Q Consensus 269 ~LrV~~ak~~~ 279 (806)
+|+|.|++...
T Consensus 93 ~l~V~~a~~~~ 103 (112)
T 1x4f_A 93 CVKVDLSEKYK 103 (112)
T ss_dssp CCEEEEECSCS
T ss_pred EEEEEECcccc
Confidence 99999998654
No 132
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.52 E-value=3.3e-14 Score=144.47 Aligned_cols=82 Identities=30% Similarity=0.532 Sum_probs=77.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
+.++|||||||+.+|+++|+.+|++||.|.+|+|+ ++..+|+++|||||+|.+.++|.+|+..|||..+.|+.|++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~---~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE---ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEe---cccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 46899999999999999999999999999999999 688899999999999999999999999999999999999999
Q ss_pred eccCC
Q psy17497 274 WGKSV 278 (806)
Q Consensus 274 ~ak~~ 278 (806)
|+...
T Consensus 91 ~~~~~ 95 (213)
T 4f02_A 91 WSQRD 95 (213)
T ss_dssp ECCCC
T ss_pred ccccc
Confidence 98643
No 133
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.6e-14 Score=129.33 Aligned_cols=81 Identities=28% Similarity=0.507 Sum_probs=73.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCee----EEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCC
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLA----SIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQS 267 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~----sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~G 267 (806)
.+.+++|||+|||+.+++++|+.+|++||.|. .++++ +|+++|||||+|.+.++|..|+..|||..|+|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-------~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 94 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-------TGRMRGQAFITFPNKEIAWQALHLVNGYKLYG 94 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-------CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-------CCccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 34578999999999999999999999999994 44443 68899999999999999999999999999999
Q ss_pred eeEEEEeccCCC
Q psy17497 268 YEMKLGWGKSVP 279 (806)
Q Consensus 268 r~LrV~~ak~~~ 279 (806)
+.|+|.|+++..
T Consensus 95 ~~l~v~~a~~~~ 106 (115)
T 2cpx_A 95 KILVIEFGKNKK 106 (115)
T ss_dssp CBCEEEECCCCS
T ss_pred cEEEEEEccCCC
Confidence 999999998754
No 134
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.51 E-value=1.4e-14 Score=130.22 Aligned_cols=82 Identities=22% Similarity=0.500 Sum_probs=75.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
....++|||+|||+.+++++|+.+|++||.|.+|+|+ .+. +|+++|||||+|.+.++|+.|+. +|..|+|+.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~---~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~ 79 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKII---TDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLK 79 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEE---ECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEE---ECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEE
Confidence 4457899999999999999999999999999999999 455 88999999999999999999998 99999999999
Q ss_pred EEeccCCC
Q psy17497 272 LGWGKSVP 279 (806)
Q Consensus 272 V~~ak~~~ 279 (806)
|+++....
T Consensus 80 v~~a~~~~ 87 (102)
T 2xs2_A 80 LGPAIRKQ 87 (102)
T ss_dssp EEEEEECC
T ss_pred EEECCcCc
Confidence 99997643
No 135
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.8e-14 Score=125.18 Aligned_cols=78 Identities=26% Similarity=0.459 Sum_probs=70.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCC-eeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCC-ceeCCee
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGP-LASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNG-KDVQSYE 269 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~-I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG-~~l~Gr~ 269 (806)
....++|||+|||+.+++++|+.+|++||. |..+.++ ++|||||+|.+.++|+.|+..||| ..|+|+.
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 74 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKI 74 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----------CCCEEEEEECCHHHHHHHHHHccCCeeECCEE
Confidence 345789999999999999999999999999 6666654 479999999999999999999999 9999999
Q ss_pred EEEEeccCCC
Q psy17497 270 MKLGWGKSVP 279 (806)
Q Consensus 270 LrV~~ak~~~ 279 (806)
|+|.|+++..
T Consensus 75 l~v~~a~~~~ 84 (93)
T 2cqh_A 75 MEVDYSVSKK 84 (93)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9999998653
No 136
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.50 E-value=1.1e-14 Score=123.14 Aligned_cols=75 Identities=20% Similarity=0.456 Sum_probs=70.6
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEec
Q psy17497 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWG 275 (806)
Q Consensus 197 tLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~a 275 (806)
+|||+|||+.+++++|+.+|++||.|.+|.|+ .+..+|+++|||||+|.+.++|.+|+. ++|..++|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~---~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELP---MDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCC---CSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---ecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999998 677789999999999999999999998 5899999999999886
No 137
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.4e-14 Score=135.21 Aligned_cols=83 Identities=14% Similarity=0.167 Sum_probs=74.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
....++|||+|||+.+|+++|+.+|+.||.|..+.++ .+..+|+++|||||+|.+.++|.+||. |||..|+|+.|+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~---~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 97 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYI---AYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQ 97 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEE---EECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEE---EECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEE
Confidence 3456899999999999999999999999999886555 356689999999999999999999999 999999999999
Q ss_pred EEeccCC
Q psy17497 272 LGWGKSV 278 (806)
Q Consensus 272 V~~ak~~ 278 (806)
|.|+...
T Consensus 98 V~~a~~~ 104 (124)
T 1wel_A 98 VHPITKK 104 (124)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998653
No 138
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.7e-13 Score=122.26 Aligned_cols=78 Identities=24% Similarity=0.468 Sum_probs=71.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
....++|||+|| .+++++|+.+|++||.|.+|.|. +++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 80 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK 80 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 345789999996 89999999999999999999986 5789999999999999999999999999999999
Q ss_pred EEeccCCCC
Q psy17497 272 LGWGKSVPI 280 (806)
Q Consensus 272 V~~ak~~~~ 280 (806)
|.|+++.+.
T Consensus 81 v~~a~~~~~ 89 (97)
T 1x5p_A 81 VNIARKQPM 89 (97)
T ss_dssp EECCSSCCC
T ss_pred EEECCCCCC
Confidence 999987543
No 139
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.50 E-value=2.1e-14 Score=148.73 Aligned_cols=81 Identities=16% Similarity=0.268 Sum_probs=76.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCC--CeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYG--PLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG--~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
..++|||+||++.+|+++|+.+|++|| .|.+|+|+ .+..+|+++|||||+|.+.++|++||..|||..|+|+.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~---~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFF---ENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEE---ECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEE---ecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeE
Confidence 468999999999999999999999999 99999999 6888999999999999999999999999999999999999
Q ss_pred EEeccC
Q psy17497 272 LGWGKS 277 (806)
Q Consensus 272 V~~ak~ 277 (806)
|.|+++
T Consensus 144 V~~a~~ 149 (229)
T 3q2s_C 144 VTPVNK 149 (229)
T ss_dssp EEECCH
T ss_pred EEECCC
Confidence 999864
No 140
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.50 E-value=3.9e-14 Score=131.63 Aligned_cols=82 Identities=13% Similarity=0.103 Sum_probs=74.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCC---eeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCe
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGP---LASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSY 268 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~---I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr 268 (806)
....++|||+|||+.+|+++|+.+|+.||. |.+|+|+ .+.. |+++|||||+|.+.++|++|+. |||..|+|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~---~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr 88 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFI---YTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHR 88 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEE---ECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEE---ECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCe
Confidence 345789999999999999999999999999 8999998 4555 8999999999999999999999 999999999
Q ss_pred eEEEEeccCC
Q psy17497 269 EMKLGWGKSV 278 (806)
Q Consensus 269 ~LrV~~ak~~ 278 (806)
.|+|.++...
T Consensus 89 ~i~V~~a~~~ 98 (118)
T 2db1_A 89 YIEVFKSHRT 98 (118)
T ss_dssp EEEEEEECHH
T ss_pred EEEEEECCHH
Confidence 9999998643
No 141
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=6e-14 Score=127.25 Aligned_cols=82 Identities=16% Similarity=0.206 Sum_probs=73.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
....++|||+|||+.+|+++|+++|+.||.+ +|+|+ .+. +|+++|||||+|.+.++|++||. +|+..|+|+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~---~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIE---IGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVE 85 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEE---ESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEE---ECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEE
Confidence 3456899999999999999999999999954 99998 455 79999999999999999999994 899999999999
Q ss_pred EEeccCCC
Q psy17497 272 LGWGKSVP 279 (806)
Q Consensus 272 V~~ak~~~ 279 (806)
|.++....
T Consensus 86 V~~~~~~~ 93 (102)
T 1wez_A 86 LFLNSTAG 93 (102)
T ss_dssp EEEECCCC
T ss_pred EEECCCCC
Confidence 99887543
No 142
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.24 E-value=1.9e-15 Score=139.24 Aligned_cols=85 Identities=15% Similarity=0.387 Sum_probs=78.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeE--------EEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCc
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLAS--------IKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGK 263 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~s--------VkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~ 263 (806)
.+..++|||+|||+.+++++|+.+|++||.|.. |+|+ .+..+|+++|||||+|.+.++|.+|+..|||.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~---~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLY---TDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 80 (116)
Confidence 355789999999999999999999999999999 8888 57778999999999999999999999999999
Q ss_pred eeCCeeEEEEeccCCC
Q psy17497 264 DVQSYEMKLGWGKSVP 279 (806)
Q Consensus 264 ~l~Gr~LrV~~ak~~~ 279 (806)
.|.|+.|+|.|+++.+
T Consensus 81 ~~~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 81 EFSGNPIKVSFATRRA 96 (116)
Confidence 9999999999998754
No 143
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.49 E-value=7.1e-14 Score=122.61 Aligned_cols=77 Identities=13% Similarity=0.279 Sum_probs=71.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
...++|||+|||+.+++++|+.+|++| .|.+|+|. +++|||||+|.+.++|++|+..|||..++|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 72 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIV 72 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEE
Confidence 346889999999999999999999999 99999885 57899999999999999999999999999999999
Q ss_pred EeccCCC
Q psy17497 273 GWGKSVP 279 (806)
Q Consensus 273 ~~ak~~~ 279 (806)
.|+....
T Consensus 73 ~~a~~~~ 79 (88)
T 1wg1_A 73 QLQPTDA 79 (88)
T ss_dssp EECCCCC
T ss_pred EEcCCCc
Confidence 9987654
No 144
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.49 E-value=7.8e-14 Score=139.97 Aligned_cols=84 Identities=14% Similarity=0.423 Sum_probs=78.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
..++|||+|||..+++++|+.+|++||.|..|+|+ .+..+|+++|||||+|.+.++|.+|+..|||..|+|+.|+|.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~---~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~ 200 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLA---RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 200 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEE---ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEE---ecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEE
Confidence 45899999999999999999999999999999999 566788999999999999999999999999999999999999
Q ss_pred eccCCCC
Q psy17497 274 WGKSVPI 280 (806)
Q Consensus 274 ~ak~~~~ 280 (806)
|+++.+.
T Consensus 201 ~a~~~~~ 207 (216)
T 2qfj_A 201 KAVTPPM 207 (216)
T ss_dssp ECSSCSS
T ss_pred EecCCCC
Confidence 9987643
No 145
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.49 E-value=4.9e-14 Score=140.45 Aligned_cols=85 Identities=21% Similarity=0.296 Sum_probs=78.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
....++|||+|||+.+++++|+.+|++||.|.+|.|+ .+. +|.++|||||+|.+.++|..|+..|||..|+|+.|+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~---~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~ 160 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVD---YDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD 160 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEEC---CCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---ECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEE
Confidence 3457899999999999999999999999999999998 455 789999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q psy17497 272 LGWGKSVPI 280 (806)
Q Consensus 272 V~~ak~~~~ 280 (806)
|.|+.....
T Consensus 161 V~~a~~~~~ 169 (177)
T 2f3j_A 161 IQLVASQID 169 (177)
T ss_dssp EEEESSGGG
T ss_pred EEEecCCCC
Confidence 999986543
No 146
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.49 E-value=1.4e-13 Score=125.61 Aligned_cols=76 Identities=20% Similarity=0.446 Sum_probs=70.8
Q ss_pred CCCCCEEEEcCCCCC-CcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 192 DPCTTNLYLGNLNPK-ITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 192 dp~~ttLfVgNLp~~-vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
.+..++|||+|||+. +++++|+.+|++||.|.+|+|. +|||||+|.+.++|+.|+..|||..|+|+.|
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 92 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH-----------KGYAFVQYSNERHARAAVLGENGRVLAGQTL 92 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE-----------TTEEEEECSSSHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe-----------CCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 345689999999999 9999999999999999999883 6999999999999999999999999999999
Q ss_pred EEEeccCC
Q psy17497 271 KLGWGKSV 278 (806)
Q Consensus 271 rV~~ak~~ 278 (806)
+|.|++..
T Consensus 93 ~V~~a~~~ 100 (110)
T 1wf1_A 93 DINMAGEP 100 (110)
T ss_dssp CEEESCCC
T ss_pred EEEECCCC
Confidence 99999854
No 147
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.3e-13 Score=132.05 Aligned_cols=83 Identities=25% Similarity=0.547 Sum_probs=77.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
....++|||+|||+.+++++|+.+|++||.|.++.|+ .+..+|.++|||||+|.+.++|.+|+..|||..++|+.|+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~---~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 160 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVM---WDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR 160 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEE---ECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEE---ecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Confidence 4457899999999999999999999999999999998 5777899999999999999999999999999999999999
Q ss_pred EEeccC
Q psy17497 272 LGWGKS 277 (806)
Q Consensus 272 V~~ak~ 277 (806)
|.||+.
T Consensus 161 v~~a~~ 166 (166)
T 3md3_A 161 INWAAK 166 (166)
T ss_dssp EEESCC
T ss_pred EEecCC
Confidence 999873
No 148
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.49 E-value=4e-14 Score=135.50 Aligned_cols=82 Identities=13% Similarity=0.086 Sum_probs=75.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCC---eeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCC
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGP---LASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQS 267 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~---I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~G 267 (806)
.....++|||+|||+.+|+++|+.+|++||. |.+|+|+ .+.. |+++|||||+|.+.++|++|+. |||..|+|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~---~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g 114 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFI---YTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGH 114 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEE---ECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEE---ECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECC
Confidence 3455789999999999999999999999999 8999998 4655 8999999999999999999999 99999999
Q ss_pred eeEEEEeccC
Q psy17497 268 YEMKLGWGKS 277 (806)
Q Consensus 268 r~LrV~~ak~ 277 (806)
+.|+|.++..
T Consensus 115 r~i~V~~a~~ 124 (136)
T 2hgl_A 115 RYIEVFKSHR 124 (136)
T ss_dssp SEEEEEECCH
T ss_pred EEEEEEECCh
Confidence 9999999854
No 149
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.49 E-value=6.2e-14 Score=133.80 Aligned_cols=87 Identities=28% Similarity=0.400 Sum_probs=73.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEE--EEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASI--KIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sV--kI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
..+++|||+|||+.+|+++|+.+|++||.|.++ +++.......+|+++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 346899999999999999999999999999875 111000113578999999999999999999999999999999999
Q ss_pred EEEeccCCC
Q psy17497 271 KLGWGKSVP 279 (806)
Q Consensus 271 rV~~ak~~~ 279 (806)
+|.|+++..
T Consensus 123 ~V~~a~~~~ 131 (143)
T 3egn_A 123 VVQFARSAR 131 (143)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCC
Confidence 999998643
No 150
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.48 E-value=6.9e-14 Score=134.54 Aligned_cols=80 Identities=25% Similarity=0.492 Sum_probs=73.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
.....++|||+|||+.+++++|+.+|++||.|.+|+|+. + ++|||||+|.+.++|..|+..|||..|+|+.|
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~---~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 140 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVAR---N-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRV 140 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECS---S-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEee---C-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 345679999999999999999999999999999999982 2 58999999999999999999999999999999
Q ss_pred EEEeccCC
Q psy17497 271 KLGWGKSV 278 (806)
Q Consensus 271 rV~~ak~~ 278 (806)
+|.|+++.
T Consensus 141 ~v~~a~~~ 148 (150)
T 2i2y_A 141 RVELSNGE 148 (150)
T ss_dssp EEEECCCC
T ss_pred EEEEcCCC
Confidence 99999864
No 151
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=8.8e-14 Score=123.37 Aligned_cols=80 Identities=20% Similarity=0.353 Sum_probs=70.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEE-EeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIK-IMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVk-I~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
...++|||+|||+.+++++|+.+|++||.|.+|+ |+ .+..+ +.|||+|.+.++|..|+..|||..|+|+.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~---~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 85 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVN---TDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLK 85 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEEC---CSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEee---cCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 3468899999999999999999999999999995 76 34333 3399999999999999999999999999999
Q ss_pred EEeccCCC
Q psy17497 272 LGWGKSVP 279 (806)
Q Consensus 272 V~~ak~~~ 279 (806)
|.|+++..
T Consensus 86 V~~a~~~~ 93 (96)
T 2e44_A 86 VAYIPDEM 93 (96)
T ss_dssp EEECCCCC
T ss_pred EEEcCccc
Confidence 99998763
No 152
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=5.9e-14 Score=130.56 Aligned_cols=79 Identities=23% Similarity=0.415 Sum_probs=71.2
Q ss_pred CCCCEEEE--cCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCcee-----
Q psy17497 193 PCTTNLYL--GNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDV----- 265 (806)
Q Consensus 193 p~~ttLfV--gNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l----- 265 (806)
.++++||| |||+..+++++|+++|++||.|.+|.|+ ..+|||||+|.+.++|++|+..|||..|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~---------~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP---------PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC---------TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe---------CCCCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 34788999 7799999999999999999999999876 2379999999999999999999999998
Q ss_pred CCeeEEEEeccCCCC
Q psy17497 266 QSYEMKLGWGKSVPI 280 (806)
Q Consensus 266 ~Gr~LrV~~ak~~~~ 280 (806)
.|++|.|.|++.++.
T Consensus 94 ~g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 94 QKITLYLNFVEKVQW 108 (114)
T ss_dssp CEEECEEEEESCCCC
T ss_pred CCcEEEEEecccCcc
Confidence 689999999987653
No 153
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.5e-13 Score=121.87 Aligned_cols=77 Identities=18% Similarity=0.310 Sum_probs=68.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
..++|||+|||+.+++++|+.+|++||.|.+| ++ +..+|+ ||||+|.+.++|..|+. |||..|+|+.|+|.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~----~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~ 77 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VM----DKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVR 77 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EE----CSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCB
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EE----cCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEE
Confidence 46799999999999999999999999999998 44 444444 99999999999999999 99999999999999
Q ss_pred eccCCC
Q psy17497 274 WGKSVP 279 (806)
Q Consensus 274 ~ak~~~ 279 (806)
++....
T Consensus 78 ~a~~~~ 83 (94)
T 2e5g_A 78 PREQKE 83 (94)
T ss_dssp CSCCSC
T ss_pred ECCcCC
Confidence 886543
No 154
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.48 E-value=5.8e-14 Score=124.57 Aligned_cols=80 Identities=19% Similarity=0.321 Sum_probs=72.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
....++|||+|||+.+++++|+.+|++||.|..+ ..+|+++|||||+|.+.++|..|+..|||..|+|+.|+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--------~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 84 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV--------SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 84 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--------EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--------CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 4557899999999999999999999999988766 23578899999999999999999999999999999999
Q ss_pred EEeccCCC
Q psy17497 272 LGWGKSVP 279 (806)
Q Consensus 272 V~~ak~~~ 279 (806)
|.|+++..
T Consensus 85 v~~a~~~~ 92 (96)
T 1fjc_A 85 LYYTGEKG 92 (96)
T ss_dssp EEECSSSC
T ss_pred EEEcCCCC
Confidence 99998654
No 155
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.48 E-value=3.4e-14 Score=129.44 Aligned_cols=82 Identities=10% Similarity=0.056 Sum_probs=74.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCC---eeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCe
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGP---LASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSY 268 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~---I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr 268 (806)
....++|||+|||+.+|+++|+.+|+.||. |.+|+|+ .+.. |+++|||||+|.+.++|.+|+. |||..|+|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~---~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFL---LNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQR 82 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECC---CCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEE---ECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCe
Confidence 345789999999999999999999999998 8999998 5666 8999999999999999999999 999999999
Q ss_pred eEEEEeccCC
Q psy17497 269 EMKLGWGKSV 278 (806)
Q Consensus 269 ~LrV~~ak~~ 278 (806)
.|+|.++.+.
T Consensus 83 ~i~V~~a~~~ 92 (107)
T 2lmi_A 83 YVEVYEINNE 92 (107)
T ss_dssp CCCCEECCHH
T ss_pred EEEEEECCHH
Confidence 9999998653
No 156
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.47 E-value=1.3e-13 Score=132.09 Aligned_cols=81 Identities=28% Similarity=0.560 Sum_probs=76.4
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEe
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGW 274 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~ 274 (806)
.++|||+|||+.+++++|+.+|+.||.|.+|+|+ .+..+|+++|||||.|.+.++|..|+..|||..+.|+.|+|.|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~---~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLV---RDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEE---ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEE---eCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEe
Confidence 5899999999999999999999999999999998 5677889999999999999999999999999999999999999
Q ss_pred ccCC
Q psy17497 275 GKSV 278 (806)
Q Consensus 275 ak~~ 278 (806)
+.+.
T Consensus 79 ~~~~ 82 (167)
T 1fxl_A 79 ARPS 82 (167)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8753
No 157
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.47 E-value=3e-13 Score=152.70 Aligned_cols=85 Identities=20% Similarity=0.405 Sum_probs=79.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
...++|||+|||+.||+++|..+|++||.|..|.|+ .+..+|.++|||||+|.+.++|..||..|||..|+|+.|+|
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~---~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V 176 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMV---YSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 176 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEee---ccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEE
Confidence 346899999999999999999999999999999999 67788999999999999999999999999999999999999
Q ss_pred EeccCCCC
Q psy17497 273 GWGKSVPI 280 (806)
Q Consensus 273 ~~ak~~~~ 280 (806)
.|+++...
T Consensus 177 ~~a~~~~~ 184 (437)
T 3pgw_S 177 DVERGRTV 184 (437)
T ss_pred EEeCCCCC
Confidence 99987544
No 158
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.3e-13 Score=127.00 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=71.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
..++|||+|||+.+++++|+++|+.| .|.+|+|+ .+.. |+++|||||+|.+.++|++|+ .|||..|+|+.|+|.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~---~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 88 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLL---KDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVS 88 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEEC---CCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEE---ECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEE
Confidence 35799999999999999999999999 89999998 5654 899999999999999999999 699999999999998
Q ss_pred eccC
Q psy17497 274 WGKS 277 (806)
Q Consensus 274 ~ak~ 277 (806)
.+..
T Consensus 89 ~a~~ 92 (109)
T 2dnn_A 89 PATE 92 (109)
T ss_dssp ECCH
T ss_pred ECCc
Confidence 8753
No 159
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.46 E-value=1.2e-13 Score=132.89 Aligned_cols=82 Identities=29% Similarity=0.528 Sum_probs=76.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
++++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+|+++|||||.|.+.++|..|+..|+|..++|+.|+|.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~---~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 78 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIM---RDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVS 78 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECC---EETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE---EeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEE
Confidence 36899999999999999999999999999999998 566788999999999999999999999999999999999999
Q ss_pred eccCC
Q psy17497 274 WGKSV 278 (806)
Q Consensus 274 ~ak~~ 278 (806)
|+++.
T Consensus 79 ~~~~~ 83 (168)
T 1b7f_A 79 YARPG 83 (168)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98754
No 160
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.46 E-value=2.9e-13 Score=133.40 Aligned_cols=80 Identities=15% Similarity=0.299 Sum_probs=71.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCC--eeEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQS--YEMK 271 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~G--r~Lr 271 (806)
...+|||+||++.+|+++|+.+|++||.|.+|.|+. .+++|||||+|.+.++|+.|+..|||..|.| +.|+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~-------k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-------KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE-------SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe-------CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 356799999999999999999999999999999871 2357899999999999999999999999965 9999
Q ss_pred EEeccCCCC
Q psy17497 272 LGWGKSVPI 280 (806)
Q Consensus 272 V~~ak~~~~ 280 (806)
|.|+++..+
T Consensus 118 V~~Ak~~~l 126 (164)
T 1sjr_A 118 IDFSKLTSL 126 (164)
T ss_dssp EEECSSSSC
T ss_pred EEEecCCcc
Confidence 999997654
No 161
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.45 E-value=2.3e-13 Score=129.40 Aligned_cols=78 Identities=15% Similarity=0.350 Sum_probs=70.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccE-EEEEecChHHHHHHHHHhCCceeCC--eeEE
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNC-GFVAFMNRKDGERALKYLNGKDVQS--YEMK 271 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~-aFV~F~~~~dAe~Ai~~LnG~~l~G--r~Lr 271 (806)
...|||+||++.+|+++|+.+|++||.|.+|+|+. +.+|| |||+|.+.++|..|+..|||..|.| +.|+
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~--------~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT--------KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE--------ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc--------CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 46789999999999999999999999999998871 23677 9999999999999999999999988 9999
Q ss_pred EEeccCCCC
Q psy17497 272 LGWGKSVPI 280 (806)
Q Consensus 272 V~~ak~~~~ 280 (806)
|.|+++..+
T Consensus 100 I~~ak~~~l 108 (130)
T 3zzy_A 100 IDFSKLTSL 108 (130)
T ss_dssp EEECSCSSC
T ss_pred EEecCCCce
Confidence 999997654
No 162
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.43 E-value=4.1e-13 Score=136.57 Aligned_cols=80 Identities=20% Similarity=0.283 Sum_probs=73.1
Q ss_pred CCCCEEEEcCCC-CCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 193 PCTTNLYLGNLN-PKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 193 p~~ttLfVgNLp-~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
+.+++|||+||| ..+++++|+.+|++||.|.+|+|+. ..+|||||+|.+.++|+.|+..|||..|.|+.|+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~--------~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 73 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMK--------SKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMN 73 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECT--------TSTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEec--------CCCCEEEEEECCHHHHHHHHHHhCCCEECCceEE
Confidence 347899999999 7999999999999999999999982 2479999999999999999999999999999999
Q ss_pred EEeccCCCC
Q psy17497 272 LGWGKSVPI 280 (806)
Q Consensus 272 V~~ak~~~~ 280 (806)
|.|++...+
T Consensus 74 v~~s~~~~~ 82 (205)
T 3tyt_A 74 VCVSKQPAI 82 (205)
T ss_dssp EEECSCSCC
T ss_pred EEEccCCcc
Confidence 999986543
No 163
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.43 E-value=3.5e-13 Score=130.42 Aligned_cols=79 Identities=18% Similarity=0.433 Sum_probs=75.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
..++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+|+++|||||.|.+.++|.+|+..|||..++|+.|+|.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~---~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 169 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLV---KDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 169 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEE---ECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEE---ecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 46889999999999999999999999999999998 566789999999999999999999999999999999999999
Q ss_pred ec
Q psy17497 274 WG 275 (806)
Q Consensus 274 ~a 275 (806)
||
T Consensus 170 ~A 171 (172)
T 2g4b_A 170 RA 171 (172)
T ss_dssp EC
T ss_pred eC
Confidence 97
No 164
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.43 E-value=6.8e-13 Score=125.15 Aligned_cols=75 Identities=23% Similarity=0.291 Sum_probs=67.8
Q ss_pred EEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccE-EEEEecChHHHHHHHHHhCCceeCC--eeEEEE
Q psy17497 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNC-GFVAFMNRKDGERALKYLNGKDVQS--YEMKLG 273 (806)
Q Consensus 197 tLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~-aFV~F~~~~dAe~Ai~~LnG~~l~G--r~LrV~ 273 (806)
.|||+||++.+++++|+.+|++||.|.+|+|+. + .|| |||+|.+.++|..|+..|||..|.| +.|+|.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~--------~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK--------R-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE--------S-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe--------C-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 478999999999999999999999999999971 1 376 9999999999999999999999987 699999
Q ss_pred eccCCCC
Q psy17497 274 WGKSVPI 280 (806)
Q Consensus 274 ~ak~~~~ 280 (806)
||++..+
T Consensus 98 ~Ak~~~l 104 (124)
T 2e5i_A 98 YARPTRL 104 (124)
T ss_dssp CCSCSCC
T ss_pred EecCCcc
Confidence 9997654
No 165
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.42 E-value=5.9e-13 Score=131.77 Aligned_cols=84 Identities=17% Similarity=0.397 Sum_probs=78.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
...++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+|.++|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~---~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 188 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLV---KDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 188 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEE---ECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEe---ecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 457899999999999999999999999999999998 56678899999999999999999999999999999999999
Q ss_pred EeccCCC
Q psy17497 273 GWGKSVP 279 (806)
Q Consensus 273 ~~ak~~~ 279 (806)
.|+++..
T Consensus 189 ~~a~~~~ 195 (198)
T 2yh0_A 189 QRASVGA 195 (198)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9998754
No 166
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.42 E-value=2.1e-13 Score=142.34 Aligned_cols=81 Identities=22% Similarity=0.492 Sum_probs=72.1
Q ss_pred CCCCCCEEEEcCCCCCC---------cHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhC
Q psy17497 191 GDPCTTNLYLGNLNPKI---------TEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLN 261 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~v---------te~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~Ln 261 (806)
.+..+++||||||+..+ ++++|+.+|++||.|.+|+|+ .++|||||+|.++++|+.|+..|+
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~---------~~kG~AFV~F~~~~~Ae~A~~am~ 200 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV---------ESKNCGFVKFKYQANAEFAKEAMS 200 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE---------GGGTEEEEEESSHHHHHHHHHHHT
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE---------CCCCEEEEEeCCHHHHHHHHHHhC
Confidence 35678999999999998 799999999999999999998 358999999999999999999999
Q ss_pred Ccee------------CCeeEEEEeccCCCC
Q psy17497 262 GKDV------------QSYEMKLGWGKSVPI 280 (806)
Q Consensus 262 G~~l------------~Gr~LrV~~ak~~~~ 280 (806)
|..| .|+.|+|.||+..+.
T Consensus 201 g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 201 NQTLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TCCCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred CCEEeccccccccccCCCCEEEEEEccCCCC
Confidence 9999 899999999987654
No 167
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.42 E-value=4.4e-13 Score=118.46 Aligned_cols=76 Identities=20% Similarity=0.388 Sum_probs=62.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCce--eCCe
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKD--VQSY 268 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~--l~Gr 268 (806)
..+..++|||||||+.+|+++|+.+|++||.|.+|+|+. .++|||||+|.+.++|++ |+|.. +.|+
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~--------~srGfaFV~F~~~~~A~~----~~~~~~~~~g~ 74 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK--------PFRAFAFVTFADDKVAQS----LCGEDLIIKGI 74 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCS--------SCCSEEEEEESCHHHHHH----HTTCEEEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEee--------CCCCEEEEEECCHHHHHH----HcCCCcccCCE
Confidence 345679999999999999999999999999999999982 378999999999999873 56665 4599
Q ss_pred eEEEEeccCC
Q psy17497 269 EMKLGWGKSV 278 (806)
Q Consensus 269 ~LrV~~ak~~ 278 (806)
.|.|.++++.
T Consensus 75 ~v~v~~a~~k 84 (89)
T 3d2w_A 75 SVHISNAEPK 84 (89)
T ss_dssp EEEEEECC--
T ss_pred EEEEEEcCCC
Confidence 9999998764
No 168
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.41 E-value=2.3e-13 Score=131.12 Aligned_cols=80 Identities=18% Similarity=0.454 Sum_probs=75.4
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEe
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGW 274 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~ 274 (806)
.++|||+|||+.+++++|+.+|++||.|.+|+|+ .+..+|+++|||||+|.+.++|.+|+. ++|..++|+.|+|.|
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~---~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~ 162 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLM---LDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKR 162 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECC---CSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEE
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEE---EcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEee
Confidence 5689999999999999999999999999999998 677789999999999999999999998 899999999999999
Q ss_pred ccCC
Q psy17497 275 GKSV 278 (806)
Q Consensus 275 ak~~ 278 (806)
|++.
T Consensus 163 a~pk 166 (167)
T 2cjk_A 163 AEPR 166 (167)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9864
No 169
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.41 E-value=2.3e-13 Score=128.61 Aligned_cols=79 Identities=13% Similarity=0.247 Sum_probs=71.6
Q ss_pred CEEEEcCC----CCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecC----hHH----HHHHHH--HhC
Q psy17497 196 TNLYLGNL----NPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMN----RKD----GERALK--YLN 261 (806)
Q Consensus 196 ttLfVgNL----p~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~----~~d----Ae~Ai~--~Ln 261 (806)
++|||||| |+.+++..|+.+|+.||.|.+|.++ .|+.||+++|||||+|.+ ..+ |.+|+. .||
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li---~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ln 79 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAF---NDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESS 79 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEE---ECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEE---ecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhc
Confidence 78999999 9999999999999999999999999 799999999999999995 323 788888 789
Q ss_pred CceeCCeeEEEEeccC
Q psy17497 262 GKDVQSYEMKLGWGKS 277 (806)
Q Consensus 262 G~~l~Gr~LrV~~ak~ 277 (806)
|..|+|+.|+|.+.+.
T Consensus 80 g~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 80 GCFIMGFKFEVILNKH 95 (136)
T ss_dssp CEEETTEEEEEEECCT
T ss_pred CCeecCcEEEEEECcc
Confidence 9999999999997654
No 170
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.41 E-value=5.6e-13 Score=124.68 Aligned_cols=76 Identities=25% Similarity=0.472 Sum_probs=70.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
..+++|||+|| .+++++|+.+|++||.|.+|.|+ +++|||||+|.+.++|..|+..|||..|+|+.|+|
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 45789999996 69999999999999999999987 57899999999999999999999999999999999
Q ss_pred EeccCCC
Q psy17497 273 GWGKSVP 279 (806)
Q Consensus 273 ~~ak~~~ 279 (806)
.|+++.+
T Consensus 106 ~~a~~~~ 112 (121)
T 2bz2_A 106 NIARKQP 112 (121)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 9998754
No 171
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.41 E-value=5e-13 Score=132.06 Aligned_cols=83 Identities=22% Similarity=0.365 Sum_probs=76.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
....++|||+|||+.+|+++|+.+|++||.|.+|+|+ .+..+|+++|||||.|.+.++|..|+.. +|..+.|+.|+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~---~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~ 85 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVM---RDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVE 85 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE---ECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---EcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEee
Confidence 3457899999999999999999999999999999999 5777899999999999999999999975 99999999999
Q ss_pred EEeccCC
Q psy17497 272 LGWGKSV 278 (806)
Q Consensus 272 V~~ak~~ 278 (806)
|.|+...
T Consensus 86 v~~~~~~ 92 (196)
T 1l3k_A 86 PKRAVSR 92 (196)
T ss_dssp EEECCC-
T ss_pred eecccCc
Confidence 9998754
No 172
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.40 E-value=5.5e-13 Score=135.40 Aligned_cols=79 Identities=29% Similarity=0.519 Sum_probs=73.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEe
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGW 274 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~ 274 (806)
.++|||+|||+.+|+++|+.+|++||.|.+|+|+ .+. +.++|||||+|.+.++|.+|+..|||..|+|+.|+|.|
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~---~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~ 177 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV---CDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 177 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE---EET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEee---ccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 5789999999999999999999999999999998 343 45799999999999999999999999999999999999
Q ss_pred ccCC
Q psy17497 275 GKSV 278 (806)
Q Consensus 275 ak~~ 278 (806)
+++.
T Consensus 178 a~~~ 181 (213)
T 4f02_A 178 FKSR 181 (213)
T ss_dssp CCCH
T ss_pred cCCC
Confidence 9754
No 173
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.40 E-value=5.3e-13 Score=115.85 Aligned_cols=72 Identities=26% Similarity=0.511 Sum_probs=66.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccC----C-------CeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhC
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRY----G-------PLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLN 261 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~f----G-------~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~Ln 261 (806)
...++|||+|||+.+++++|+.+|++| | .|.+++++ +.+|||||+|.+.++|.+|+ .||
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~---------~~kg~afV~f~~~~~a~~A~-~l~ 73 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---------QDKNFAFLEFRSVDETTQAM-AFD 73 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC---------SSSSEEEEEESSHHHHHHHG-GGT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec---------CCCcEEEEEcCCHHHHHHHH-hcC
Confidence 346899999999999999999999999 8 89999988 34799999999999999999 999
Q ss_pred CceeCCeeEEEEe
Q psy17497 262 GKDVQSYEMKLGW 274 (806)
Q Consensus 262 G~~l~Gr~LrV~~ 274 (806)
|..++|+.|+|..
T Consensus 74 g~~~~g~~l~V~r 86 (87)
T 2hzc_A 74 GIIFQGQSLKIRR 86 (87)
T ss_dssp TCEETTEECEEEC
T ss_pred CCEECCeEEEEeC
Confidence 9999999999973
No 174
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=5.8e-13 Score=119.42 Aligned_cols=74 Identities=24% Similarity=0.363 Sum_probs=65.9
Q ss_pred CCCCEEEEcCCCCCCcHHH----HHHHhccCC-CeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCC
Q psy17497 193 PCTTNLYLGNLNPKITEQQ----LMEIFGRYG-PLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQS 267 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~----L~~~F~~fG-~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~G 267 (806)
|..|.|||+|||..+++++ |+.+|++|| .|.+| . | |+|||.|.+.++|.+|++.|||..+.|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--t--------g---G~AfV~F~~~esA~~A~~~l~G~~l~g 73 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--T--------G---CSAILRFINQDSAERAQKRMENEDVFG 73 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--C--------T---TCEEEEESSHHHHHHHHHHHTTCCSSS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--e--------c---CEEEEEECCHHHHHHHHHHhcCCccCC
Confidence 4455599999999999987 568999994 99887 2 3 999999999999999999999999999
Q ss_pred eeEEEEeccCCC
Q psy17497 268 YEMKLGWGKSVP 279 (806)
Q Consensus 268 r~LrV~~ak~~~ 279 (806)
|+|+|.||+..+
T Consensus 74 r~i~v~~A~~~s 85 (96)
T 2diu_A 74 NRIIVSFTPKNR 85 (96)
T ss_dssp SCCEEESSCCSC
T ss_pred ceEEEEecCCCc
Confidence 999999998764
No 175
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.39 E-value=6.2e-13 Score=122.84 Aligned_cols=75 Identities=19% Similarity=0.296 Sum_probs=65.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCee---
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYE--- 269 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~--- 269 (806)
...++|||+|||+.+++++|+.+|.+||.|..|.|+. + |||||+|.+.++|+.||..|||..|+|+.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~ 83 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR---D-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 83 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECT---T-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEec---C-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeee
Confidence 3468899999999999999999999999999999982 2 99999999999999999999999999998
Q ss_pred --EEEEeccC
Q psy17497 270 --MKLGWGKS 277 (806)
Q Consensus 270 --LrV~~ak~ 277 (806)
|+|..+.+
T Consensus 84 ~~i~v~~~~~ 93 (115)
T 3beg_B 84 AYIRVKVDGP 93 (115)
T ss_dssp CBCEEEECC-
T ss_pred EEEEeccCCC
Confidence 66665544
No 176
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.39 E-value=4.6e-13 Score=126.65 Aligned_cols=80 Identities=16% Similarity=0.204 Sum_probs=71.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCee--EEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCee
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLA--SIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYE 269 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~--sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~ 269 (806)
....++|||+|||+.+|+++|+.+|+.| .|. +|+|+ .+.. |+++|||||+|.+.++|++|+. +++..|+|+.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~---~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~ 112 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLP---VDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRY 112 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECC---CCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEE---ECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEE
Confidence 3457889999999999999999999999 566 89988 5665 9999999999999999999998 5789999999
Q ss_pred EEEEeccC
Q psy17497 270 MKLGWGKS 277 (806)
Q Consensus 270 LrV~~ak~ 277 (806)
|+|.++..
T Consensus 113 I~V~~a~~ 120 (126)
T 2hgm_A 113 IEVFKSSQ 120 (126)
T ss_dssp CCCEEECH
T ss_pred EEEEECCH
Confidence 99988753
No 177
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.39 E-value=1e-12 Score=125.72 Aligned_cols=80 Identities=38% Similarity=0.618 Sum_probs=72.8
Q ss_pred CEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEec
Q psy17497 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWG 275 (806)
Q Consensus 196 ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~a 275 (806)
++|||+|||+.+|+++|+.+|++||.|.+|+|+ .+. +|+++|||||+|.+.++|..|+..|||..+.|+.|+|.|+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~---~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIM---IDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEE---CCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEE---ECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEc
Confidence 579999999999999999999999999999998 343 4678999999999999999999999999999999999998
Q ss_pred cCCC
Q psy17497 276 KSVP 279 (806)
Q Consensus 276 k~~~ 279 (806)
....
T Consensus 77 ~~~~ 80 (166)
T 3md3_A 77 FQSQ 80 (166)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 178
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=6.3e-13 Score=122.35 Aligned_cols=79 Identities=16% Similarity=0.299 Sum_probs=68.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCcccc---CCcccEEEEEecChHHHHHHHHHhCCceeCCee
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEK---ARGRNCGFVAFMNRKDGERALKYLNGKDVQSYE 269 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~t---g~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~ 269 (806)
...++|||+|||+.+++++|+.+|++||.|. +.++ .+..+ |+++|||||+|.+.++|++|+..|+ .++|+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~---~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~ 79 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWP---HKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKL 79 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECT---TSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEe---ecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcE
Confidence 3468899999999999999999999999999 7777 34444 7999999999999999999999995 478888
Q ss_pred EEEEeccC
Q psy17497 270 MKLGWGKS 277 (806)
Q Consensus 270 LrV~~ak~ 277 (806)
|.+..+..
T Consensus 80 ~~~~~~~~ 87 (114)
T 2dnl_A 80 YLCVSSPT 87 (114)
T ss_dssp EEEECCSS
T ss_pred EEeccCCC
Confidence 88876543
No 179
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.38 E-value=1.2e-12 Score=125.98 Aligned_cols=80 Identities=31% Similarity=0.506 Sum_probs=74.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCC--eeE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQS--YEM 270 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~G--r~L 270 (806)
...++|||+|||..+++++|+.+|++||.|..++|+ .+..+|+++|||||+|.+.++|.+|+..|||..+.| ++|
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~---~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l 163 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNIL---RDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPL 163 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEE---ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCC
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEE---EcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEE
Confidence 456899999999999999999999999999999998 566678899999999999999999999999999988 999
Q ss_pred EEEec
Q psy17497 271 KLGWG 275 (806)
Q Consensus 271 rV~~a 275 (806)
+|.||
T Consensus 164 ~V~~A 168 (168)
T 1b7f_A 164 SVRLA 168 (168)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99986
No 180
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.38 E-value=9.5e-12 Score=130.73 Aligned_cols=82 Identities=24% Similarity=0.436 Sum_probs=75.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHH----HHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCC
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLM----EIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQS 267 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~----~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~G 267 (806)
.+.+++|||+|||+.+++++|+ .+|++||.|.+|+|+ . +|+++|||||+|.+.++|.+|+..|||..|.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~---~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVS---R---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD 79 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEc---C---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCC
Confidence 4558999999999999999966 899999999999998 2 67899999999999999999999999999999
Q ss_pred eeEEEEeccCCC
Q psy17497 268 YEMKLGWGKSVP 279 (806)
Q Consensus 268 r~LrV~~ak~~~ 279 (806)
+.|+|.|++...
T Consensus 80 ~~l~v~~a~~~~ 91 (282)
T 3pgw_A 80 KPMRIQYAKTDS 91 (282)
T ss_pred cEEEEEEeccCc
Confidence 999999997654
No 181
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.38 E-value=8.8e-13 Score=132.28 Aligned_cols=81 Identities=20% Similarity=0.403 Sum_probs=73.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
..++|||+|||+.+|+++|+.+|+.||.|.+|+|+ .+..+|+++|||||.|.+.++|..|+..|||..|+|+.|+|.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~---~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 103 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMS---WDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVG 103 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEC---CC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEE
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEe---ecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEe
Confidence 36899999999999999999999999999999998 677789999999999999999999999999999999999998
Q ss_pred eccC
Q psy17497 274 WGKS 277 (806)
Q Consensus 274 ~ak~ 277 (806)
|+..
T Consensus 104 ~~~~ 107 (216)
T 2qfj_A 104 RPSN 107 (216)
T ss_dssp CCSC
T ss_pred cCCC
Confidence 7654
No 182
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.37 E-value=2.4e-13 Score=130.59 Aligned_cols=81 Identities=15% Similarity=0.156 Sum_probs=72.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
...++|||+|||+.+|+++|+++|++|| |.+|+|+ .+.. |+++|||||+|.+.++|++|| .+|+..|+|+.|+|
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~---~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIE---IGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIEL 117 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECC---CSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEE---ECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEE
Confidence 4467899999999999999999999999 6799998 5655 899999999999999999999 79999999999999
Q ss_pred EeccCCC
Q psy17497 273 GWGKSVP 279 (806)
Q Consensus 273 ~~ak~~~ 279 (806)
.++....
T Consensus 118 ~~a~~~~ 124 (139)
T 2hgn_A 118 FLNSTTG 124 (139)
T ss_dssp EECCCSC
T ss_pred EECCCCC
Confidence 9887543
No 183
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.37 E-value=1.2e-12 Score=129.32 Aligned_cols=84 Identities=19% Similarity=0.358 Sum_probs=74.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
...++|||+|||+.+++++|+.+|++||.|..|+|+ .+..+|.++|||||.|.+.++|.+|+.. +|..|+|+.|+|
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~---~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v 177 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM---TDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEV 177 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEE---ECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe---ecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEE
Confidence 446899999999999999999999999999999999 5777899999999999999999999986 899999999999
Q ss_pred EeccCCCC
Q psy17497 273 GWGKSVPI 280 (806)
Q Consensus 273 ~~ak~~~~ 280 (806)
.|+.+..-
T Consensus 178 ~~a~~k~~ 185 (196)
T 1l3k_A 178 RKALSKQE 185 (196)
T ss_dssp EECC----
T ss_pred EecCChhH
Confidence 99986543
No 184
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=4.5e-13 Score=126.11 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=71.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCe----eEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCe
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPL----ASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSY 268 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I----~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr 268 (806)
...++|||+|||+.+|+++|+++|++||.| ..|+|+ .+ .+|+++|||||+|.+.++|++|+.. |+..|+|+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~---~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR 95 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFV---TY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKR 95 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEE---EC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEE---EC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCe
Confidence 346899999999999999999999999985 689998 45 4799999999999999999999985 99999999
Q ss_pred eEEEEeccC
Q psy17497 269 EMKLGWGKS 277 (806)
Q Consensus 269 ~LrV~~ak~ 277 (806)
.|+|..+..
T Consensus 96 ~i~V~~a~~ 104 (123)
T 2dha_A 96 YIELFRSTA 104 (123)
T ss_dssp EECCEEECH
T ss_pred EEEEEECCH
Confidence 999988753
No 185
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=8.6e-13 Score=115.40 Aligned_cols=75 Identities=19% Similarity=0.353 Sum_probs=64.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCc--eeCCeeE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGK--DVQSYEM 270 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~--~l~Gr~L 270 (806)
..+++|||+|||+.+++++|+.+|++||.|.+|+|+. .++|||||+|.+.++|++| ++. .+.|+.|
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~--------~~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l 70 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPK--------PFRAFAFVTFADDQIAQSL----CGEDLIIKGISV 70 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCS--------SCCSCCEEECSCHHHHHHT----TTCEEEETTEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEec--------CCCCEEEEEECCHHHHHHH----hcCCceeCCEEE
Confidence 3468999999999999999999999999999999982 2689999999999999754 444 4589999
Q ss_pred EEEeccCCC
Q psy17497 271 KLGWGKSVP 279 (806)
Q Consensus 271 rV~~ak~~~ 279 (806)
+|.|+++..
T Consensus 71 ~v~~a~~~~ 79 (88)
T 1wf0_A 71 HISNAEPKH 79 (88)
T ss_dssp EEECCCCCC
T ss_pred EEEecCCCC
Confidence 999998654
No 186
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.36 E-value=1.4e-12 Score=124.94 Aligned_cols=80 Identities=28% Similarity=0.541 Sum_probs=73.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCee--E
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYE--M 270 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~--L 270 (806)
...++|||+|||+.+++++|+.+|++||.|..++|+ .+..+|+++|||||+|.+.++|.+|+..|||..+.|+. |
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~---~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i 162 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL---VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 162 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE---ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCC
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEE---ecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccce
Confidence 346889999999999999999999999999999998 56678899999999999999999999999999999965 8
Q ss_pred EEEec
Q psy17497 271 KLGWG 275 (806)
Q Consensus 271 rV~~a 275 (806)
+|.||
T Consensus 163 ~v~~A 167 (167)
T 1fxl_A 163 TVKFA 167 (167)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99886
No 187
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.34 E-value=1.7e-12 Score=124.98 Aligned_cols=79 Identities=27% Similarity=0.470 Sum_probs=72.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
++++|||+|||+.+|+++|+.+|++||.|.+|+|+ .+..+|+++|||||.|.+.++|..|+.. +..+.|+.|+|.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~---~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~ 76 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIM---KDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPK 76 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECC---CCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---ECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccc
Confidence 36899999999999999999999999999999998 6778899999999999999999999984 678999999998
Q ss_pred eccC
Q psy17497 274 WGKS 277 (806)
Q Consensus 274 ~ak~ 277 (806)
|+.+
T Consensus 77 ~~~~ 80 (167)
T 2cjk_A 77 RAIP 80 (167)
T ss_dssp ECCC
T ss_pred cccc
Confidence 8753
No 188
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.34 E-value=2.1e-12 Score=124.81 Aligned_cols=79 Identities=23% Similarity=0.463 Sum_probs=72.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeC---Cee
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQ---SYE 269 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~---Gr~ 269 (806)
...++|||+|||+.+|+++|+.+|++||.|.+|+|+ .+. +|+++|||||+|.+.++|.+|+..|||..+. |++
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~ 168 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRIL---RGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 168 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE---ECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSC
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEE---ECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCC
Confidence 357899999999999999999999999999999998 343 5889999999999999999999999998776 499
Q ss_pred EEEEec
Q psy17497 270 MKLGWG 275 (806)
Q Consensus 270 LrV~~a 275 (806)
|+|.||
T Consensus 169 l~V~~a 174 (175)
T 3nmr_A 169 MVVKFA 174 (175)
T ss_dssp CEEEEC
T ss_pred eEEEec
Confidence 999997
No 189
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.33 E-value=2e-12 Score=124.97 Aligned_cols=82 Identities=23% Similarity=0.455 Sum_probs=72.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccC--CcccEEEEEecChHHHHHHHHHhCCceeC---Ce
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKA--RGRNCGFVAFMNRKDGERALKYLNGKDVQ---SY 268 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg--~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~---Gr 268 (806)
..++|||+|||+.+|+++|+.+|++||.|.+|+|+ .+..+| +++|||||.|.+.++|..|+..|||..+. ++
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~---~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 78 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVL---RDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHH 78 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEE---EECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---ecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCcc
Confidence 46899999999999999999999999999999998 566665 88999999999999999999999998876 57
Q ss_pred eEEEEeccCC
Q psy17497 269 EMKLGWGKSV 278 (806)
Q Consensus 269 ~LrV~~ak~~ 278 (806)
.+.+.++...
T Consensus 79 ~~~~~~~~~~ 88 (175)
T 3nmr_A 79 PIQMKPADSE 88 (175)
T ss_dssp CCEEEECGGG
T ss_pred ceEEcccccc
Confidence 7788776643
No 190
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.32 E-value=5.4e-12 Score=115.37 Aligned_cols=82 Identities=18% Similarity=0.114 Sum_probs=71.1
Q ss_pred CCCCEEEEcCCCC-----CCcHHHHHHHhccCCCeeEEEEeCCCCccc-cCCcccEEEEEecChHHHHHHHHHhCCceeC
Q psy17497 193 PCTTNLYLGNLNP-----KITEQQLMEIFGRYGPLASIKIMWPRSDEE-KARGRNCGFVAFMNRKDGERALKYLNGKDVQ 266 (806)
Q Consensus 193 p~~ttLfVgNLp~-----~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~-tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~ 266 (806)
..+++|+|.||.. .-++++|+.+|++||.|.+|.|+ .+.. +++++|||||+|.+.++|.+|+..|||..++
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~---~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~ 82 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIF---EIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG 82 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEE---ECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEe---cCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3478899999963 23689999999999999999998 3433 3688999999999999999999999999999
Q ss_pred CeeEEEEeccC
Q psy17497 267 SYEMKLGWGKS 277 (806)
Q Consensus 267 Gr~LrV~~ak~ 277 (806)
|+.|+|.|+..
T Consensus 83 Gr~i~v~~a~~ 93 (105)
T 2pe8_A 83 GRVVKACFYNL 93 (105)
T ss_dssp TEECEEEECCH
T ss_pred CcEEEEEEcCH
Confidence 99999999864
No 191
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.32 E-value=3.5e-12 Score=124.08 Aligned_cols=79 Identities=19% Similarity=0.332 Sum_probs=71.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
....++|||+|||+.+++++|+.+|++||.|..+ ..+|.++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--------~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 167 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV--------SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 167 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--------CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--------cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3457899999999999999999999999987765 24578899999999999999999999999999999999
Q ss_pred EEeccCC
Q psy17497 272 LGWGKSV 278 (806)
Q Consensus 272 V~~ak~~ 278 (806)
|.|+++.
T Consensus 168 v~~a~~k 174 (175)
T 1fje_B 168 LYYTGEK 174 (175)
T ss_dssp EEECSSC
T ss_pred EEecCCC
Confidence 9999864
No 192
>2dt7_B Splicing factor 3 subunit 1; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=99.32 E-value=8.9e-13 Score=116.05 Aligned_cols=55 Identities=24% Similarity=0.296 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHhhcCCCCCcccccCCCCCCCchhHHHHHHHh
Q psy17497 352 TLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSIL 407 (806)
Q Consensus 352 ~~~~~Idk~a~~V~~~G~~FE~~l~~re~~np~F~FL~d~~sp~h~YYrwrl~s~~ 407 (806)
.-+.+|++||.|||+||..||.+||+|+.+||+|+||+.. +++|.||+|+|.++.
T Consensus 30 kdl~iIk~TA~FVArnG~~Fe~~l~~re~~NpqF~FL~p~-h~~~~yy~~~v~~Y~ 84 (85)
T 2dt7_B 30 FDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQ-HSLFNYFTKLVEQYT 84 (85)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHTTTCGGGGGGSTT-STHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhcCCCCceeeCCCC-CCchHHHHHHHHHHh
Confidence 4569999999999999999999999999999999999875 679999999997764
No 193
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.31 E-value=4.5e-12 Score=127.86 Aligned_cols=79 Identities=10% Similarity=0.168 Sum_probs=71.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
..++|||+|||+.+++++|+.+|++||.|.+|+|+. +. +|+++|||||+|.+.++|..|+..++ ..++|+.|+|.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~---~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~ 182 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRR---TL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLIL 182 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEE---CT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEE---CC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEE
Confidence 358999999999999999999999999999999983 33 48899999999999999999998654 59999999999
Q ss_pred eccC
Q psy17497 274 WGKS 277 (806)
Q Consensus 274 ~ak~ 277 (806)
|++.
T Consensus 183 ~~~~ 186 (193)
T 2voo_A 183 FKDD 186 (193)
T ss_dssp ETTT
T ss_pred EhHH
Confidence 9875
No 194
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.30 E-value=4.1e-12 Score=134.21 Aligned_cols=83 Identities=23% Similarity=0.410 Sum_probs=75.0
Q ss_pred CCCCCEEEEcCCCCC-CcHHHHHHHhccCCCeeEEEEeCCCCccc-cCCcccEEEEEecChHHHHHHHHHhCCceeCCee
Q psy17497 192 DPCTTNLYLGNLNPK-ITEQQLMEIFGRYGPLASIKIMWPRSDEE-KARGRNCGFVAFMNRKDGERALKYLNGKDVQSYE 269 (806)
Q Consensus 192 dp~~ttLfVgNLp~~-vte~~L~~~F~~fG~I~sVkI~~Pr~d~~-tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~ 269 (806)
....++|||+|||+. +++++|+.+|++||.|.+|+|+ .+.. ||.++|||||.|.+.++|.+|+ .|||..|+|+.
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~ 282 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIP---AGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNRE 282 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECC---SCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEE---ecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcE
Confidence 445789999999999 9999999999999999999998 4444 5899999999999999999999 99999999999
Q ss_pred EEEEeccCC
Q psy17497 270 MKLGWGKSV 278 (806)
Q Consensus 270 LrV~~ak~~ 278 (806)
|+|.|+++.
T Consensus 283 i~V~~a~~k 291 (292)
T 2ghp_A 283 ISVSLADKK 291 (292)
T ss_dssp EEEEECCCC
T ss_pred EEEEEecCC
Confidence 999999864
No 195
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.29 E-value=5.4e-12 Score=129.49 Aligned_cols=80 Identities=25% Similarity=0.511 Sum_probs=73.4
Q ss_pred CCCCCEEEEcCCCC-CCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 192 DPCTTNLYLGNLNP-KITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 192 dp~~ttLfVgNLp~-~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
.+.+++|||+|||+ .+++++|+.+|++||.|.+|+|+. + .+|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~---~-----~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 102 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILF---N-----KKENALVQMADGNQAQLAMSHLNGHKLHGKPI 102 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECC---T-----TSCCEEEEESCHHHHHHHHHHHTTCBCSSSBC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEE---C-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 45679999999999 999999999999999999999982 2 27899999999999999999999999999999
Q ss_pred EEEeccCCC
Q psy17497 271 KLGWGKSVP 279 (806)
Q Consensus 271 rV~~ak~~~ 279 (806)
+|.|++...
T Consensus 103 ~v~~a~~~~ 111 (229)
T 2adc_A 103 RITLSKHQN 111 (229)
T ss_dssp EEECCSCCC
T ss_pred EEEEecCcc
Confidence 999998653
No 196
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.28 E-value=8.6e-12 Score=131.04 Aligned_cols=78 Identities=23% Similarity=0.389 Sum_probs=71.7
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeC-Cee
Q psy17497 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQ-SYE 269 (806)
Q Consensus 191 ~dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~-Gr~ 269 (806)
..+.+++|||+|||..+++++|+.+|++||.|.+|+|+. + .+|||||+|.+.++|.+|+..|||..|. |+.
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~---~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 274 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP---G-----RHDIAFVEFDNEVQAGAARDALQGFKITQNNA 274 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec---C-----CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCE
Confidence 345678999999999999999999999999999999982 1 2589999999999999999999999999 999
Q ss_pred EEEEecc
Q psy17497 270 MKLGWGK 276 (806)
Q Consensus 270 LrV~~ak 276 (806)
|+|.|++
T Consensus 275 l~v~~ak 281 (282)
T 3pgw_A 275 MKISFAK 281 (282)
T ss_pred EEEEEec
Confidence 9999997
No 197
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.27 E-value=1.2e-11 Score=129.98 Aligned_cols=83 Identities=24% Similarity=0.444 Sum_probs=77.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
..++|||+|||+.+++++|+.+|+.||.|.+|+|+ .+..+|.++|||||.|.+.++|.+|+..|||..++|+.|+|.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~---~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~ 170 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLV---YSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVH 170 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE---ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEE---eeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 45899999999999999999999999999999998 577789999999999999999999999999999999999999
Q ss_pred eccCCC
Q psy17497 274 WGKSVP 279 (806)
Q Consensus 274 ~ak~~~ 279 (806)
|+.+..
T Consensus 171 ~a~~~~ 176 (284)
T 3smz_A 171 WTDAGQ 176 (284)
T ss_dssp ECCGGG
T ss_pred ECCCCC
Confidence 997643
No 198
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.27 E-value=1.2e-11 Score=130.17 Aligned_cols=84 Identities=10% Similarity=0.152 Sum_probs=76.7
Q ss_pred CCCCCEEEEcCCCCCC-cHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 192 DPCTTNLYLGNLNPKI-TEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 192 dp~~ttLfVgNLp~~v-te~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
....++|||+|||+.+ ++++|+.+|+.||.|.+|+|+ .+. +|+++|||||.|.+.++|.+|+..|||..++|+.|
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~---~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 256 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLA---CGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHL 256 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEE---ECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEE---ECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEE
Confidence 3457899999999995 999999999999999999998 343 68899999999999999999999999999999999
Q ss_pred EEEeccCCC
Q psy17497 271 KLGWGKSVP 279 (806)
Q Consensus 271 rV~~ak~~~ 279 (806)
+|.|+++..
T Consensus 257 ~v~~a~~~~ 265 (284)
T 3smz_A 257 RVSFCAPGP 265 (284)
T ss_dssp EEEECCSSS
T ss_pred EEEEecCCC
Confidence 999998654
No 199
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.26 E-value=1.1e-11 Score=123.22 Aligned_cols=79 Identities=22% Similarity=0.407 Sum_probs=72.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCC-CeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeC-Cee
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYG-PLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQ-SYE 269 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG-~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~-Gr~ 269 (806)
.+.+++|||+|||..+++++|+.+|++|| .|.+|+|+. ..+|||||+|.+.++|.+|+..|||..++ |+.
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~--------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 188 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ--------KDRKMALIQMGSVEEAVQALIDLHNHDLGENHH 188 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESS--------TTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEe--------CCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCe
Confidence 45689999999999999999999999999 999999972 23789999999999999999999999999 999
Q ss_pred EEEEeccCC
Q psy17497 270 MKLGWGKSV 278 (806)
Q Consensus 270 LrV~~ak~~ 278 (806)
|+|.|+++.
T Consensus 189 l~v~~a~~~ 197 (198)
T 1qm9_A 189 LRVSFSKST 197 (198)
T ss_dssp CCEEEECCC
T ss_pred EEEEeeccc
Confidence 999999863
No 200
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.26 E-value=1.5e-11 Score=128.71 Aligned_cols=76 Identities=29% Similarity=0.499 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
...++|||+|||+.+|+++|+.+|+.||.|.+|+|+ +++|||||.|.+.++|..|+..|||..|.|+.|+|
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~---------~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN---------RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE---------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe---------CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 456899999999999999999999999999999997 45799999999999999999999999999999999
Q ss_pred EeccC
Q psy17497 273 GWGKS 277 (806)
Q Consensus 273 ~~ak~ 277 (806)
.|+.+
T Consensus 91 ~~a~~ 95 (261)
T 3sde_A 91 RFATH 95 (261)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99864
No 201
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.24 E-value=9.2e-12 Score=123.87 Aligned_cols=77 Identities=26% Similarity=0.538 Sum_probs=71.4
Q ss_pred CCEEEEcCCCC-CCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEE
Q psy17497 195 TTNLYLGNLNP-KITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273 (806)
Q Consensus 195 ~ttLfVgNLp~-~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~ 273 (806)
+++|||+|||+ .+++++|+.+|++||.|.+|+|+. + .+|||||.|.+.++|..|+..|||..+.|+.|+|.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~---~-----~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 74 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILF---N-----KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 74 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECST---T-----CSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEe---C-----CCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEE
Confidence 58999999999 999999999999999999999983 2 27899999999999999999999999999999999
Q ss_pred eccCCC
Q psy17497 274 WGKSVP 279 (806)
Q Consensus 274 ~ak~~~ 279 (806)
|++...
T Consensus 75 ~a~~~~ 80 (198)
T 1qm9_A 75 LSKHQN 80 (198)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 998654
No 202
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=4.7e-11 Score=109.53 Aligned_cols=79 Identities=10% Similarity=0.208 Sum_probs=68.5
Q ss_pred CCCCEEEEcCCCCCCc-----------HHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhC
Q psy17497 193 PCTTNLYLGNLNPKIT-----------EQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLN 261 (806)
Q Consensus 193 p~~ttLfVgNLp~~vt-----------e~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~Ln 261 (806)
..+++|+|.||..... +++|+.+|++||.|.+|.|. +. .++|||||+|.+.++|.+|+..||
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~----~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF----DR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE----TT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe----cC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 4578999999954432 68999999999999999764 22 378999999999999999999999
Q ss_pred CceeCCeeEEEEeccCC
Q psy17497 262 GKDVQSYEMKLGWGKSV 278 (806)
Q Consensus 262 G~~l~Gr~LrV~~ak~~ 278 (806)
|..++|+.|+|.|+.+.
T Consensus 86 g~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGT 102 (112)
T ss_dssp TCEETTEECEEEECCSC
T ss_pred CCEECCcEEEEEEeCCC
Confidence 99999999999999764
No 203
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.24 E-value=1.8e-11 Score=125.51 Aligned_cols=79 Identities=22% Similarity=0.407 Sum_probs=72.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCC-CeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeC-Cee
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYG-PLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQ-SYE 269 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG-~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~-Gr~ 269 (806)
.+.+++|||+|||+.+++++|+.+|++|| .|..|+|+. ..+|||||+|.+.++|.+|+..|||..++ |+.
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~--------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~ 219 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ--------KDRKMALIQMGSVEEAVQALIDLHNHDLGENHH 219 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS--------SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE--------CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCe
Confidence 35579999999999999999999999999 999999972 24789999999999999999999999999 999
Q ss_pred EEEEeccCC
Q psy17497 270 MKLGWGKSV 278 (806)
Q Consensus 270 LrV~~ak~~ 278 (806)
|+|.|+++.
T Consensus 220 l~v~~a~~~ 228 (229)
T 2adc_A 220 LRVSFSKST 228 (229)
T ss_dssp CEEEECSSC
T ss_pred EEEEEecCC
Confidence 999999863
No 204
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.23 E-value=3.9e-12 Score=123.73 Aligned_cols=82 Identities=29% Similarity=0.389 Sum_probs=72.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEE
Q psy17497 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271 (806)
Q Consensus 192 dp~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~Lr 271 (806)
....++|||+|||+.+++++|+.+|..||.+..+ ++ .+..+|+++|||||+|.+.++|..|+ .|||..+.|+.|+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~---~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 84 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AV---VDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIK 84 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CC---CEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EE---EECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEE
Confidence 3457899999999999999999999999988773 33 46678899999999999999999999 5999999999999
Q ss_pred EEeccCC
Q psy17497 272 LGWGKSV 278 (806)
Q Consensus 272 V~~ak~~ 278 (806)
|.|+++.
T Consensus 85 v~~~~~~ 91 (175)
T 1fje_B 85 LEKPKGR 91 (175)
T ss_dssp EECCCCS
T ss_pred EecCCCc
Confidence 9998764
No 205
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.22 E-value=2.8e-11 Score=116.93 Aligned_cols=75 Identities=25% Similarity=0.490 Sum_probs=67.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccC----C-------CeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCC
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRY----G-------PLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNG 262 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~f----G-------~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG 262 (806)
+.++|||+|||+.+|+++|+.+|++| | .|.++++. +++|||||+|.+.++|.+|+ .|||
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~---------~~~g~afV~f~~~~~A~~A~-~~~~ 72 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---------QDKNFAFLEFRSVDETTQAM-AFDG 72 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE---------TTTTEEEEEESSHHHHHHHG-GGTT
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec---------CCCCEEEEEeCCHHHHHHHH-HhCC
Confidence 36899999999999999999999999 6 77777776 56899999999999999999 8999
Q ss_pred ceeCCeeEEEEeccCC
Q psy17497 263 KDVQSYEMKLGWGKSV 278 (806)
Q Consensus 263 ~~l~Gr~LrV~~ak~~ 278 (806)
..+.|+.|+|.|++..
T Consensus 73 ~~~~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 73 IIFQGQSLKIRRPHDY 88 (172)
T ss_dssp CEETTEECEEECCSSC
T ss_pred cEecCceeeecCCccc
Confidence 9999999999987643
No 206
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.20 E-value=8.5e-11 Score=116.16 Aligned_cols=76 Identities=25% Similarity=0.479 Sum_probs=67.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccC----C-------CeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCC
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRY----G-------PLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNG 262 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~f----G-------~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG 262 (806)
..++|||+|||+.+++++|+.+|++| | .|.++.+. +++|||||+|.+.++|.+|+ .|||
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~---------~~~g~afV~F~~~~~A~~Al-~l~g 72 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---------QDKNFAFLEFRSVDETTQAM-AFDG 72 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE---------TTTTEEEEEESCSHHHHHHG-GGTT
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec---------CCCCEEEEEeCCHHHHHHHH-HhcC
Confidence 36899999999999999999999999 5 56666554 67899999999999999999 8999
Q ss_pred ceeCCeeEEEEeccCCC
Q psy17497 263 KDVQSYEMKLGWGKSVP 279 (806)
Q Consensus 263 ~~l~Gr~LrV~~ak~~~ 279 (806)
..|.|+.|+|.|++...
T Consensus 73 ~~~~g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 73 IIFQGQSLKIRRPHDYQ 89 (198)
T ss_dssp EEETTEEEEEECCCCCC
T ss_pred CEEcCceEEEeCCCCCC
Confidence 99999999999987653
No 207
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.19 E-value=2.2e-11 Score=123.72 Aligned_cols=78 Identities=21% Similarity=0.302 Sum_probs=68.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCe--eEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCe--
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPL--ASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSY-- 268 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I--~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr-- 268 (806)
+++++|||+|||+.+|+++|+.+|++||.| .+|+|+ .+. +..+|||||+|.+.++|..|+..|||..|.|+
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~---~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~ 195 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVF---SGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNG 195 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEEC---SCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSS
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEE---cCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCC
Confidence 457899999999999999999999999999 899998 332 45679999999999999999999999999885
Q ss_pred --eEEEEec
Q psy17497 269 --EMKLGWG 275 (806)
Q Consensus 269 --~LrV~~a 275 (806)
++.|.|+
T Consensus 196 ~~p~~vk~~ 204 (205)
T 3tyt_A 196 PYPYTLKLC 204 (205)
T ss_dssp SSCEECEEE
T ss_pred CcceEEEec
Confidence 5666654
No 208
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.17 E-value=1.7e-11 Score=111.78 Aligned_cols=73 Identities=15% Similarity=0.277 Sum_probs=63.8
Q ss_pred EEcCCCCCCcHHHHHHHh------------ccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeC
Q psy17497 199 YLGNLNPKITEQQLMEIF------------GRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQ 266 (806)
Q Consensus 199 fVgNLp~~vte~~L~~~F------------~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~ 266 (806)
++.||+..+++++|+.+| ++||.|.+|+|+ .+. +|+++|||||+|.+.++|.+|+..|||..++
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~---~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~ 94 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVC---DNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFN 94 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC---CSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEE---eCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 367788888888887776 999999999998 333 3788999999999999999999999999999
Q ss_pred CeeEEEEec
Q psy17497 267 SYEMKLGWG 275 (806)
Q Consensus 267 Gr~LrV~~a 275 (806)
|+.|+|.|+
T Consensus 95 Gr~i~v~~s 103 (104)
T 1jmt_A 95 GQPIHAELS 103 (104)
T ss_dssp TEECCEEEC
T ss_pred CEEEEEEEc
Confidence 999999986
No 209
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.16 E-value=8.3e-11 Score=107.42 Aligned_cols=81 Identities=21% Similarity=0.257 Sum_probs=68.6
Q ss_pred CCCCEEEEcCC--CCCC--------cHHHHHHHhccCCCeeEEEEeCCCCcccc--CCcccEEEEEecChHHHHHHHHHh
Q psy17497 193 PCTTNLYLGNL--NPKI--------TEQQLMEIFGRYGPLASIKIMWPRSDEEK--ARGRNCGFVAFMNRKDGERALKYL 260 (806)
Q Consensus 193 p~~ttLfVgNL--p~~v--------te~~L~~~F~~fG~I~sVkI~~Pr~d~~t--g~~rg~aFV~F~~~~dAe~Ai~~L 260 (806)
.+++.|.|.|+ |..+ .+++|+..|++||.|.+|+|+. +..+ ++++|||||+|.+.++|.+|+..|
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~---~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~l 79 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPR---PVDGVEVPGCGKIFVEFTSVFDCQKAMQGL 79 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCC---CBTTBCCTTTTEEEEEESSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEec---cCCCCCcCCcEEEEEEECCHHHHHHHHHHh
Confidence 35788999998 3233 2468999999999999999983 4333 467999999999999999999999
Q ss_pred CCceeCCeeEEEEecc
Q psy17497 261 NGKDVQSYEMKLGWGK 276 (806)
Q Consensus 261 nG~~l~Gr~LrV~~ak 276 (806)
||..++||.|+|.|..
T Consensus 80 nG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 80 TGRKFANRVVVTKYCD 95 (105)
T ss_dssp TTCEETTEECEEEEEC
T ss_pred CCCEeCCCEEEEEEeC
Confidence 9999999999999874
No 210
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.16 E-value=5.9e-11 Score=125.29 Aligned_cols=82 Identities=16% Similarity=0.331 Sum_probs=70.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCC-CeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYG-PLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG-~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV 272 (806)
..++|||+|||+.+++++|+.+|+.|| .|.+|+|+ .+.. |.++|||||.|.+.++|..|+..|||..|.|+.|+|
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~---~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 191 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLP---SLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVT 191 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-----------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEE---eCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 368999999999999999999999999 99999998 3433 778999999999999999999999999999999999
Q ss_pred EeccCCC
Q psy17497 273 GWGKSVP 279 (806)
Q Consensus 273 ~~ak~~~ 279 (806)
.|+.+..
T Consensus 192 ~~a~~~~ 198 (292)
T 2ghp_A 192 KVSNPLE 198 (292)
T ss_dssp EECCCC-
T ss_pred EECCCCc
Confidence 9988543
No 211
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.14 E-value=7.3e-11 Score=123.52 Aligned_cols=80 Identities=21% Similarity=0.400 Sum_probs=72.4
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhC-CceeC---CeeE
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLN-GKDVQ---SYEM 270 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~Ln-G~~l~---Gr~L 270 (806)
.++|||+|||+.+|+++|+.+|+.||.|.+|+|+ .+ .+|+++|||||+|.+.++|.+|+..|| |..+. |++|
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~---~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i 171 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVV---VD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPV 171 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE---EE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBC
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEee---eC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceE
Confidence 5789999999999999999999999999999998 45 578999999999999999999999995 55555 8999
Q ss_pred EEEeccCC
Q psy17497 271 KLGWGKSV 278 (806)
Q Consensus 271 rV~~ak~~ 278 (806)
.|.|+...
T Consensus 172 ~v~~~~~~ 179 (261)
T 3sde_A 172 IVEPMEQF 179 (261)
T ss_dssp EEEECCCE
T ss_pred EEeecccc
Confidence 99998754
No 212
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.5e-10 Score=103.57 Aligned_cols=75 Identities=20% Similarity=0.347 Sum_probs=63.4
Q ss_pred CCEEEEcCCC-------CCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCC
Q psy17497 195 TTNLYLGNLN-------PKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQS 267 (806)
Q Consensus 195 ~ttLfVgNLp-------~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~G 267 (806)
...|-|.-.. +.+++++|+.+|++||.|..|.|+ ++++|||||+|.+.++|+.|+..+++ +.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--------~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g 79 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--------SKKPGTAVVEFATVKAAELAVQNEVG--LVD 79 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--------SSSSSEEEEEESCHHHHHHHHHTCCB--CSS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--------cCCCCEEEEEECCHHHHHHHHHhcCC--CCC
Confidence 4455555433 568999999999999999999998 37899999999999999999998655 679
Q ss_pred eeEEEEeccCCC
Q psy17497 268 YEMKLGWGKSVP 279 (806)
Q Consensus 268 r~LrV~~ak~~~ 279 (806)
++|+|.|++..+
T Consensus 80 ~~l~V~~a~~~~ 91 (100)
T 2d9o_A 80 NPLKISWLEGQP 91 (100)
T ss_dssp SBCEEECSSCCC
T ss_pred CeEEEEEccCCC
Confidence 999999998654
No 213
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.09 E-value=1.3e-10 Score=127.31 Aligned_cols=78 Identities=22% Similarity=0.398 Sum_probs=67.6
Q ss_pred CCCCCEEEEcC--CCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeC---
Q psy17497 192 DPCTTNLYLGN--LNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQ--- 266 (806)
Q Consensus 192 dp~~ttLfVgN--Lp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~--- 266 (806)
+.++.+||||| |+..+|+++|+++|++||.|.+|.|. .+||||||+|.+.++|++|++.|||..+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~---------~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~ 85 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP---------PNKPYSFARYRTTEESKRAYVTLNGKEVVDDL 85 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECC---------TTCSEEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEe---------CCCCEEEEEECCHHHHHHHHHHhCCCcccccc
Confidence 45688999999 57899999999999999999998775 25799999999999999999999999873
Q ss_pred Ce--eEEEEeccCC
Q psy17497 267 SY--EMKLGWGKSV 278 (806)
Q Consensus 267 Gr--~LrV~~ak~~ 278 (806)
|+ .|.|.|...+
T Consensus 86 g~~~~ly~~~~~~~ 99 (345)
T 3tht_A 86 GQKITLYLNFVEKV 99 (345)
T ss_dssp SCEEECEEEECSSE
T ss_pred CCceEEEEEEeecc
Confidence 45 6888888644
No 214
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.09 E-value=1.9e-10 Score=107.44 Aligned_cols=83 Identities=22% Similarity=0.232 Sum_probs=69.2
Q ss_pred CCCEEEEcCCCC--C---CcHHHHHHHhccCCCeeEEEEeCCCC-ccccCCcccEEEEEecChHHHHHHHHHhCCceeCC
Q psy17497 194 CTTNLYLGNLNP--K---ITEQQLMEIFGRYGPLASIKIMWPRS-DEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQS 267 (806)
Q Consensus 194 ~~ttLfVgNLp~--~---vte~~L~~~F~~fG~I~sVkI~~Pr~-d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~G 267 (806)
++++|+|.|+-. . --+++|+..|++||.|.+|+|+.++. ...+++++||+||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 468899999842 1 23689999999999999999984321 11246778999999999999999999999999999
Q ss_pred eeEEEEecc
Q psy17497 268 YEMKLGWGK 276 (806)
Q Consensus 268 r~LrV~~ak 276 (806)
|.|+|.|..
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999874
No 215
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=99.09 E-value=7.9e-11 Score=114.83 Aligned_cols=128 Identities=13% Similarity=0.255 Sum_probs=102.0
Q ss_pred HHHHHHHHhhc-----CcchHhHHHHHHHHhhcccchHHHHHHHHHHhhcccccchhhhhhhhhhhhhhhhccc---CCC
Q psy17497 463 RHRLEDFLRNL-----TPERVKVAEAMVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGI---KIS 534 (806)
Q Consensus 463 r~~Le~lL~~L-----t~tr~sI~~~m~w~l~ha~~A~eIvd~i~~sl~~~~t~~~kKLa~LYLinDILhNs~~---kv~ 534 (806)
.+.|+..|..| ..++..|..++.||++|..++..||.+|..++.. +|...||..||+|..|+.|+.. ++.
T Consensus 3 v~ef~~~L~sL~~lkp~iS~skI~~LT~~A~~nv~~~~~iv~~l~~~ikk--~p~~hKL~~LYVvDSIvR~~~~~~~k~g 80 (157)
T 3clj_A 3 FQNFVATLESFKDLKSGISGSRIKKLTTYALDHIDIESKIISLIIDYSRL--CPDSHKLGSLYIIDSIGRAYLDETRSNS 80 (157)
T ss_dssp HHHHHHHHHGGGGCSSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHH--SCGGGHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh--CCCcceeeeeeehHHHHHHHHHHHHhcC
Confidence 46788888887 3689999999999999999999999999999975 6779999999999999999862 111
Q ss_pred C---h--hhH---HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhccccccCCHHHHHHHHHHHc
Q psy17497 535 N---A--SFY---RRGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWAVYPKDYLIKLQNVFL 600 (806)
Q Consensus 535 n---a--~~y---r~~fe~~Lp~IF~~l~~~y~~~~gr~~ae~~k~kV~~VL~iWe~~~vfp~~~l~~L~~~f~ 600 (806)
. + ..| ...|...++.+|.. +|... .++.|.+|.+||++|+...+||++.|+.|++.+.
T Consensus 81 ~~~~a~~gt~a~~v~~~~e~i~~l~~~---~~~~~-----~~~~k~Ki~klldiW~k~~~Fp~e~i~~i~~~~~ 146 (157)
T 3clj_A 81 NSSSNKPGTCAHAINTLGEVIQELLSD---AIAKS-----NQDHKEKIRMLLDIWDRSGLFQKSYLNAIRSKCF 146 (157)
T ss_dssp C----STTSHHHHHHHHHHHHHHHHHH---HHHHS-----CHHHHHHHHHHHHHHHHHTTTTTSCCTTTTSHHH
T ss_pred CccCCCCccHHHHHHHHHHHHHHHHHH---HHHcC-----CHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHhh
Confidence 1 0 123 34477777877665 33322 3788999999999999999999999988776554
No 216
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.86 E-value=8.2e-09 Score=95.77 Aligned_cols=77 Identities=13% Similarity=0.113 Sum_probs=64.4
Q ss_pred CCCEEEEcCCCCCC----------cHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCc
Q psy17497 194 CTTNLYLGNLNPKI----------TEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGK 263 (806)
Q Consensus 194 ~~ttLfVgNLp~~v----------te~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~ 263 (806)
.++.|.|.|+=..- -+++|+..|++||.|.+|.|.. + ..+|||||.|.+.++|.+|+..|||.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~---~----~~~G~~fV~f~~~e~A~~Ai~~lnG~ 78 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDK---N----SAQGNVYVKCPSIAAAIAAVNALHGR 78 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECT---T----CTTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEec---C----CCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 36678888874221 2357899999999999999972 2 24899999999999999999999999
Q ss_pred eeCCeeEEEEeccC
Q psy17497 264 DVQSYEMKLGWGKS 277 (806)
Q Consensus 264 ~l~Gr~LrV~~ak~ 277 (806)
.++|+.|+|.|+..
T Consensus 79 ~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 79 WFAGKMITAAYVPL 92 (114)
T ss_dssp EETTEECEEEEECH
T ss_pred EECCEEEEEEEEcH
Confidence 99999999999853
No 217
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.68 E-value=3.6e-08 Score=87.70 Aligned_cols=75 Identities=15% Similarity=0.315 Sum_probs=62.5
Q ss_pred CCCCEEEEcCCCC----CCcH----HHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCce
Q psy17497 193 PCTTNLYLGNLNP----KITE----QQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKD 264 (806)
Q Consensus 193 p~~ttLfVgNLp~----~vte----~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~ 264 (806)
|+..||+|..++. +.-. .+|...|++||.|..++|+. +.+||+|.+.++|.+|++ |||..
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~-----------d~~fVtF~d~~sAlaAi~-mnG~~ 72 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE-----------DKMWVTFLEGSSALNVLS-LNGKE 72 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS-----------SSEEEEESSHHHHHHGGG-GTTCE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec-----------CCEEEEECChHHHHHHHh-cCCeE
Confidence 4567788887762 3323 57899999999999999992 228999999999999998 99999
Q ss_pred eCCeeEEEEeccCCC
Q psy17497 265 VQSYEMKLGWGKSVP 279 (806)
Q Consensus 265 l~Gr~LrV~~ak~~~ 279 (806)
++|+.|+|.++.+.-
T Consensus 73 v~Gr~LkV~lkt~dW 87 (91)
T 2dnr_A 73 LLNRTITIALKSPSG 87 (91)
T ss_dssp ETTEEEEEEECCCSS
T ss_pred eCCeEEEEEeCCCCc
Confidence 999999999988653
No 218
>1x4p_A Putative splicing factor, arginine/serine-rich 14; SURP domain, SFRS14 protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=98.61 E-value=7.6e-09 Score=84.70 Aligned_cols=56 Identities=20% Similarity=0.281 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHhhcCCCCCcccccCCCCCCCchhHHHHHHHhc
Q psy17497 351 RTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSILQ 408 (806)
Q Consensus 351 ~~~~~~Idk~a~~V~~~G~~FE~~l~~re~~np~F~FL~d~~sp~h~YYrwrl~s~~~ 408 (806)
+.++.+|+|||+||+..||+-+++-- .++||-|.||+|.+|.+|.|||-||.++..
T Consensus 5 ~~~~~~ieKLa~fVaeGgpe~~~~a~--~k~nPaf~FL~D~~S~eykYYr~KlaE~r~ 60 (66)
T 1x4p_A 5 SSGVGTIDQLVKRVIEGSLSPKERTL--LKEDPAYWFLSDENSLEYKYYKLKLAEMQR 60 (66)
T ss_dssp CCSSHHHHHHHHHHHHTCSCHHHHHH--HHHSGGGCTTTCCSSSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCCcHHHHHH--cccCCceeeeeCCCcHHHHHHHHHHHHHHh
Confidence 35678999999999999999766655 568999999999999999999999988764
No 219
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=1.1e-07 Score=89.20 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=64.3
Q ss_pred CCCCCEEEEcCCCCC-CcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecC-hHHHHHHHHHhC--CceeCC
Q psy17497 192 DPCTTNLYLGNLNPK-ITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMN-RKDGERALKYLN--GKDVQS 267 (806)
Q Consensus 192 dp~~ttLfVgNLp~~-vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~-~~dAe~Ai~~Ln--G~~l~G 267 (806)
-+.++.|||+||++. ++.++|+.+|++||.|..|.++ .+ ...|||.|.+ ..+|..|+..|| |..|.|
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~---~g------~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFV---RG------AKEGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECC---TT------CSEEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEe---cC------CCEEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 466899999999999 9999999999999999999998 22 3359999999 899999999995 677889
Q ss_pred eeEEEEe
Q psy17497 268 YEMKLGW 274 (806)
Q Consensus 268 r~LrV~~ 274 (806)
..+++..
T Consensus 86 ~~~~~ev 92 (121)
T 1owx_A 86 KEVTWEV 92 (121)
T ss_dssp SSEEEEE
T ss_pred cEEEEEE
Confidence 8877763
No 220
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.41 E-value=3.3e-07 Score=93.31 Aligned_cols=70 Identities=21% Similarity=0.239 Sum_probs=61.3
Q ss_pred CcHHHHHHHhccCCCeeEEEEeCCC-CccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeEEEEecc
Q psy17497 207 ITEQQLMEIFGRYGPLASIKIMWPR-SDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGK 276 (806)
Q Consensus 207 vte~~L~~~F~~fG~I~sVkI~~Pr-~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~LrV~~ak 276 (806)
-.+++|...|++||.|.+|+|+.+. .+..+++++|++||+|.+.++|.+|+..|||..++||.|++.|..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3568899999999999999997432 234567899999999999999999999999999999999999863
No 221
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces cerevisiae}
Probab=98.40 E-value=1.9e-07 Score=90.35 Aligned_cols=51 Identities=10% Similarity=0.191 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHhhcCCCCCcccccCCCCCCCchhHHHHHHHh
Q psy17497 354 LMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSIL 407 (806)
Q Consensus 354 ~~~Idk~a~~V~~~G~~FE~~l~~re~~np~F~FL~d~~sp~h~YYrwrl~s~~ 407 (806)
+.+|..||.|||+||. |+..|++|+. ||+|.||..++ ++|.||...+-++.
T Consensus 8 ldIIklTA~FvArnG~-F~~~L~~re~-npqF~FL~p~h-~l~~~F~~lv~qY~ 58 (152)
T 4dgw_B 8 MEVIKLTARYYAKDKS-IVEQMISKDG-EARLNFMNSSH-PLHKTFTDFVAQYK 58 (152)
T ss_dssp HHHHHHHHHHHTTTSS-HHHHHHHHTC-CTTSGGGSTTS-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHheecCH-HHHHHHHhcc-CcccccCCCCC-ccHHHHHHHHHHHH
Confidence 5899999999999999 9999999999 99999998654 69999999985543
No 222
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.39 E-value=3.2e-07 Score=82.07 Aligned_cols=72 Identities=21% Similarity=0.418 Sum_probs=60.3
Q ss_pred CCCCCEEEEcCCCCC------CcH---HHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCC
Q psy17497 192 DPCTTNLYLGNLNPK------ITE---QQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNG 262 (806)
Q Consensus 192 dp~~ttLfVgNLp~~------vte---~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG 262 (806)
-|+..||+|..++.. .++ .+|...|.+||.|..|+|+. +. +||+|.+.++|.+||+ |||
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~---d~--------~fVtF~d~~sAl~AI~-ldG 79 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQ---GQ--------MLVTFADSHSALSVLD-VDG 79 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEET---TE--------EEEECSCSHHHHHHHH-GGG
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEec---Cc--------EEEEEcChHHHHHHHh-cCC
Confidence 355678999988743 221 46889999999999999992 22 9999999999999998 999
Q ss_pred ceeCCeeEEEEec
Q psy17497 263 KDVQSYEMKLGWG 275 (806)
Q Consensus 263 ~~l~Gr~LrV~~a 275 (806)
..++||.|+|.+-
T Consensus 80 ~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 80 MKVKGRAVKISGP 92 (95)
T ss_dssp SEETTEEEEEECC
T ss_pred eeeCCeEEEEecc
Confidence 9999999999863
No 223
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.0003 Score=64.37 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=64.6
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccC-----CCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCee
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRY-----GPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYE 269 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~f-----G~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~ 269 (806)
.++|-+-|||..++...++.+...| |.|..|.+.+ ..+-|+|+|.+...|-+|.-+|+|..+.|+.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~p---------DH~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVS---------DFNGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEET---------TTTEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEec---------CCCceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 5778999999999999999999999 9999998882 2456999999999999999999999999999
Q ss_pred EEEEe
Q psy17497 270 MKLGW 274 (806)
Q Consensus 270 LrV~~ 274 (806)
|+++-
T Consensus 92 Lr~gT 96 (117)
T 2l9w_A 92 IRSGT 96 (117)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99984
No 224
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.56 E-value=0.00039 Score=63.19 Aligned_cols=76 Identities=16% Similarity=0.214 Sum_probs=64.4
Q ss_pred CCEEEEcCCCCCC-c----HHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCee
Q psy17497 195 TTNLYLGNLNPKI-T----EQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYE 269 (806)
Q Consensus 195 ~ttLfVgNLp~~v-t----e~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~ 269 (806)
.++|+|.||+..| . ...++.+|..|+++.+...+ ++-.-..|.|.+.++|.+|-..|++..++|+.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l---------kSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~ 75 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF---------KSFKRVRINFSNPLSAADARLRLHKTEFLGKE 75 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE---------TTTTEEEEECSSTTHHHHHHHTSTTSEETTEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec---------CcceEEEEEeCChHHHHHHHHHhccceecCce
Confidence 4789999998866 2 25678999999999998877 23334689999999999999999999999999
Q ss_pred EEEEeccCCC
Q psy17497 270 MKLGWGKSVP 279 (806)
Q Consensus 270 LrV~~ak~~~ 279 (806)
|+|-||.+..
T Consensus 76 ~r~YFgq~~~ 85 (104)
T 1wey_A 76 MKLYFAQTLH 85 (104)
T ss_dssp CEEECCCCSS
T ss_pred eEEEecCCCC
Confidence 9999999544
No 225
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.31 E-value=0.28 Score=44.48 Aligned_cols=68 Identities=21% Similarity=0.341 Sum_probs=55.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhcc-----CCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCe
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGR-----YGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSY 268 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~-----fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr 268 (806)
-.++|.|.|||+.++++.|.-+|.. -|.|.+|... .+-|+|+|.+...|++.++. ....|.|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~-----------~~~AvItF~d~~va~rVL~k-~~H~L~~~ 74 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL-----------GCGGVLTFREPADAERVLAQ-ADHELHGA 74 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE-----------TTEEEEEESSHHHHHHHHTC-SCCBSSSS
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc-----------CCcEEEEEcChHHHHHHhcC-CcceecCe
Confidence 3578999999999999999999975 2568888776 16799999999999988752 25678888
Q ss_pred eEEEE
Q psy17497 269 EMKLG 273 (806)
Q Consensus 269 ~LrV~ 273 (806)
+|.|.
T Consensus 75 ~LsV~ 79 (104)
T 2dhx_A 75 QLSLR 79 (104)
T ss_dssp BCEEE
T ss_pred EEEEE
Confidence 88884
No 226
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.03 E-value=0.16 Score=44.96 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=54.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccC-CcccEEEEEecChHHHHHHHHHhCCceeC
Q psy17497 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKA-RGRNCGFVAFMNRKDGERALKYLNGKDVQ 266 (806)
Q Consensus 196 ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg-~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~ 266 (806)
++|-|.+|||++|++++.+.++.++.+.....+. .+...+ ....-|+|.|.+.+++..-.+.++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~--G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFS--NDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEE--SCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeC--CccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 5789999999999999999999998776666552 111112 23356899999999999999999999864
No 227
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.63 E-value=0.1 Score=48.52 Aligned_cols=70 Identities=11% Similarity=0.135 Sum_probs=56.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCC-eeEEE
Q psy17497 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQS-YEMKL 272 (806)
Q Consensus 194 ~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~G-r~LrV 272 (806)
..+-|.|-+.|+.. -..+...|.+||.|.+.... ...++-.|.|.++.+|++||. .||..|.| -.|-|
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV 91 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGV 91 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEE
Confidence 35778999999985 56677899999999987652 346899999999999999997 69999985 44444
Q ss_pred Ee
Q psy17497 273 GW 274 (806)
Q Consensus 273 ~~ 274 (806)
.+
T Consensus 92 ~p 93 (119)
T 1wwh_A 92 KP 93 (119)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 228
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.48 E-value=0.037 Score=49.81 Aligned_cols=52 Identities=21% Similarity=0.450 Sum_probs=42.2
Q ss_pred EEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhC
Q psy17497 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLN 261 (806)
Q Consensus 198 LfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~Ln 261 (806)
++| +.|+.+...+|..+|+.|| .|.|.| -| -..|||.|.+++.|..|++.+.
T Consensus 9 ~~l-~FP~ewKt~Di~~lFs~fg---gv~I~W--id------DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 9 LHV-TFPKEWKTSDLYQLFSAFG---NIQISW--ID------DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEE-ECCTTCCHHHHHHHTTTSE---EEEEEE--EE------TTEEEEEEEEECHHHHHHHHHT
T ss_pred EEE-eCChhhhhHHHHHHHhccC---CEEEEE--Ec------CCeEEEEecCHHHHHHHHHhcc
Confidence 555 9999999999999999999 344444 12 3579999999999999998764
No 229
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.44 E-value=0.037 Score=49.64 Aligned_cols=57 Identities=16% Similarity=0.318 Sum_probs=44.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHh
Q psy17497 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYL 260 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~L 260 (806)
+....||+-+.|+.+...+|..+|+.||.| .|+.+ | -..|||.|.+++.|..|++.+
T Consensus 13 p~r~HVf~l~FP~ewKt~DI~~lFs~fggv-~I~Wi----d------DTsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 13 PKRDHVLHVTFPKEWKTSDLYQLFSAFGNI-QISWI----D------DTSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCSEEEEECCTTCCHHHHHHHHTTTCSC-CCEEE----E------TTEEEEECSCHHHHHHHHHHH
T ss_pred CCCCeEEEEeCChhhhhHHHHHHhhccCCE-EEEEE----c------CCeEEEEecCHHHHHHHHHhc
Confidence 334445555999999999999999999954 34444 2 346999999999999999876
No 230
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=90.58 E-value=0.13 Score=48.47 Aligned_cols=40 Identities=13% Similarity=0.090 Sum_probs=36.6
Q ss_pred CCcccEEEEEecChHHHHHHHHHh-CCceeCCeeEEEEeccC
Q psy17497 237 ARGRNCGFVAFMNRKDGERALKYL-NGKDVQSYEMKLGWGKS 277 (806)
Q Consensus 237 g~~rg~aFV~F~~~~dAe~Ai~~L-nG~~l~Gr~LrV~~ak~ 277 (806)
...+|+++|+|.+.++|++|+..| ||..++| .|++.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 356899999999999999999999 9999999 999998865
No 231
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=88.34 E-value=0.33 Score=45.85 Aligned_cols=30 Identities=7% Similarity=0.010 Sum_probs=25.8
Q ss_pred CCcccEEEEEecChHHHHHHHHHhCCceeC
Q psy17497 237 ARGRNCGFVAFMNRKDGERALKYLNGKDVQ 266 (806)
Q Consensus 237 g~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~ 266 (806)
.+.+|||||+|.+.++|++|+..+++....
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~~ 39 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGV 39 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccCCC
Confidence 368999999999999999999988875533
No 232
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=88.05 E-value=0.26 Score=55.86 Aligned_cols=54 Identities=15% Similarity=0.271 Sum_probs=39.3
Q ss_pred CEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHH
Q psy17497 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALK 258 (806)
Q Consensus 196 ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~ 258 (806)
++|||. .|..+++.+|..+|++||+|.++.+. + ....|+.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~-----~---~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFY-----E---SFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEE-----C---SSSEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEE-----c---cCCeEEEEEeCCHHHHHHHHh
Confidence 459997 79999999999999999999999775 2 223799999999888876543
No 233
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=87.08 E-value=1.2 Score=39.81 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=49.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCC-cccEEEEEecChHHHHHHHHHhCCceeC
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKAR-GRNCGFVAFMNRKDGERALKYLNGKDVQ 266 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~-~rg~aFV~F~~~~dAe~Ai~~LnG~~l~ 266 (806)
+-.|-|.+|||++|++++.+.++.+-.+.....+ | .+...+. .-.-|+|.|.+.++...-.+.++|..+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv-~-G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFF-A-ADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCC-C-CCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEe-C-CccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 4569999999999999988888766554332222 1 1111121 2245899999999999999999999864
No 234
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=86.32 E-value=0.83 Score=43.08 Aligned_cols=78 Identities=12% Similarity=0.129 Sum_probs=52.5
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEE-EEeCCC---------CccccC-CcccEEEEEecChHHHHHHHHHhCCc
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASI-KIMWPR---------SDEEKA-RGRNCGFVAFMNRKDGERALKYLNGK 263 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sV-kI~~Pr---------~d~~tg-~~rg~aFV~F~~~~dAe~Ai~~LnG~ 263 (806)
.+-|.|-+.|+..+ ..+...|++||.|..- .+..+. .....+ ...++-.|+|.++.+|.+|+. -||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 35677878877765 4566789999998762 111000 000000 135788999999999999997 7999
Q ss_pred eeCCeeEEEEe
Q psy17497 264 DVQSYEMKLGW 274 (806)
Q Consensus 264 ~l~Gr~LrV~~ 274 (806)
.|.|..|-|.+
T Consensus 85 ii~G~mIGV~P 95 (132)
T 3p3d_A 85 VFNGVLLGVIP 95 (132)
T ss_dssp EETTEECEEEE
T ss_pred EeCcEEEEEEE
Confidence 99998666654
No 235
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=65.37 E-value=14 Score=42.25 Aligned_cols=55 Identities=15% Similarity=0.267 Sum_probs=44.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhccCCCeeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhC
Q psy17497 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLN 261 (806)
Q Consensus 195 ~ttLfVgNLp~~vte~~L~~~F~~fG~I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~Ln 261 (806)
...++|+ +|..+...+|..+|+.||. .+|+.+ ...+|||.|.+.+.|..+++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~wi----------ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWI----------DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEEC----------SSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEE----------cCCeEEEEECCHHHHHHHHHHHH
Confidence 3456666 8999999999999999995 455555 24679999999999999999885
No 236
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=61.09 E-value=9.3 Score=37.31 Aligned_cols=110 Identities=15% Similarity=0.305 Sum_probs=67.1
Q ss_pred HHHHHHhhcCc---chHhHHHHHHHHh---hcccchHHHHHHHHHHhhcccccchhhhhhhhhhhhhhhhcccCCCChhh
Q psy17497 465 RLEDFLRNLTP---ERVKVAEAMVFCM---EHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASF 538 (806)
Q Consensus 465 ~Le~lL~~Lt~---tr~sI~~~m~w~l---~ha~~A~eIvd~i~~sl~~~~t~~~kKLa~LYLinDILhNs~~kv~na~~ 538 (806)
.|+.+|...|. ...+.+-.+..|- .....+.+.+.+|.+.|...+ ....|.-|-|+.=++.||...
T Consensus 13 ~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n--~~vql~AL~LLd~~vkNCG~~------ 84 (171)
T 1juq_A 13 SLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQ--EWEALQALTVLEACMKNCGRR------ 84 (171)
T ss_dssp CHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSS--HHHHHHHHHHHHHHHHHSHHH------
T ss_pred cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHcCHH------
Confidence 36666666663 2344444444442 333457888899998887643 366788889999999999643
Q ss_pred HHHHHH-----HHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhccccccCC
Q psy17497 539 YRRGFE-----SRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWAVYP 588 (806)
Q Consensus 539 yr~~fe-----~~Lp~IF~~l~~~y~~~~gr~~ae~~k~kV~~VL~iWe~~~vfp 588 (806)
|...+. ..|..++ ...| .|......++++|+.+|..|....=..
T Consensus 85 Fh~evas~~Fl~eL~kl~---~~k~---~~~~~~~~Vk~kil~li~~W~~~f~~~ 133 (171)
T 1juq_A 85 FHNEVGKFRFLNELIKVV---SPKY---LGDRVSEKVKTKVIELLYSWTMALPEE 133 (171)
T ss_dssp HHHHHTSHHHHHHHHHHH---CCCC---CCTTSCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhhHHHHHHHHHHh---cccc---CCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 333322 2222221 1111 123345789999999999998864333
No 237
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=57.52 E-value=32 Score=33.14 Aligned_cols=100 Identities=16% Similarity=0.311 Sum_probs=62.1
Q ss_pred HHHHHhhcCc---chHhHHHHHHHH---hhcccchHHHHHHHHHHhhcccccchhhhhhhhhhhhhhhhcccCCCChhhH
Q psy17497 466 LEDFLRNLTP---ERVKVAEAMVFC---MEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASFY 539 (806)
Q Consensus 466 Le~lL~~Lt~---tr~sI~~~m~w~---l~ha~~A~eIvd~i~~sl~~~~t~~~kKLa~LYLinDILhNs~~kv~na~~y 539 (806)
|+.+|...|. .-.+.+-.+..| -.....+.+.+.+|.+.|..... ...|.-|-|+.-++.||... |
T Consensus 16 ~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~--~vql~AL~LLd~~vkNcG~~------F 87 (163)
T 1x5b_A 16 FEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVP--HVALQALTLLGACVANCGKI------F 87 (163)
T ss_dssp THHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSH--HHHHHHHHHHHHHHHHTCHH------H
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHhhHH------H
Confidence 3344444442 234444444444 22234578889999998876433 66788899999999999643 4
Q ss_pred H-----HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhcccc
Q psy17497 540 R-----RGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDW 584 (806)
Q Consensus 540 r-----~~fe~~Lp~IF~~l~~~y~~~~gr~~ae~~k~kV~~VL~iWe~~ 584 (806)
. +.|-..|..|+. . -....++++|+.+|..|...
T Consensus 88 h~evas~~Fl~el~~l~~---~--------~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 88 HLEVCSRDFATEVRAVIK---N--------KAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHTSHHHHHHHHHHHH---T--------TCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHc---c--------CCCHHHHHHHHHHHHHHHHH
Confidence 3 333333333321 1 12367999999999999874
No 238
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=53.99 E-value=55 Score=31.11 Aligned_cols=111 Identities=14% Similarity=0.283 Sum_probs=65.4
Q ss_pred HHHHHhhcC---cchHhHHHHHHHHhh---cccchHHHHHHHHHHhhcccccchhhhhhhhhhhhhhhhcccCCCChhhH
Q psy17497 466 LEDFLRNLT---PERVKVAEAMVFCME---HSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASFY 539 (806)
Q Consensus 466 Le~lL~~Lt---~tr~sI~~~m~w~l~---ha~~A~eIvd~i~~sl~~~~t~~~kKLa~LYLinDILhNs~~kv~na~~y 539 (806)
|+.+|...| ....+.+-.|.+|-- ....+.+.+..|.+.|... .....|.-|-|+.=.+.||...... ..-
T Consensus 12 ~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~--n~~v~l~AL~LLe~cvkNCG~~fh~-eia 88 (149)
T 3g2s_A 12 LEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSP--QEWEAIQALTVLETCMKSCGKRFHD-EVG 88 (149)
T ss_dssp HHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHCCHHHHH-HHT
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhcCHHHHH-HHh
Confidence 555555555 233555555655532 2234788899999998753 3366788888999999999643100 000
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhccccc
Q psy17497 540 RRGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWA 585 (806)
Q Consensus 540 r~~fe~~Lp~IF~~l~~~y~~~~gr~~ae~~k~kV~~VL~iWe~~~ 585 (806)
...|-..|..++ ..-| .|......++++|+.+|..|....
T Consensus 89 s~~Fl~eL~kl~---~~k~---~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 89 KFRFLNELIKVV---SPKY---LGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp SHHHHHHHHHHH---CTTT---TGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHH---cccc---cCCCCCHHHHHHHHHHHHHHHHHh
Confidence 122222233332 1111 122235789999999999998753
No 239
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=53.55 E-value=26 Score=33.29 Aligned_cols=115 Identities=13% Similarity=0.243 Sum_probs=65.3
Q ss_pred HHHHHhhcC---cchHhHHHHHHHHh---hcccchHHHHHHHHHHhhcccccchhhhhhhhhhhhhhhhcccCCCChhhH
Q psy17497 466 LEDFLRNLT---PERVKVAEAMVFCM---EHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASFY 539 (806)
Q Consensus 466 Le~lL~~Lt---~tr~sI~~~m~w~l---~ha~~A~eIvd~i~~sl~~~~t~~~kKLa~LYLinDILhNs~~kv~na~~y 539 (806)
|+.++...| ....+.+-.+..|- .....+.+.+.+|.+.|...+ ....|.-|-|+.=++.||... |
T Consensus 2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~~n--~~vql~AL~LLe~~vkNCG~~------f 73 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQ--EKEALYALTVLEMCMNHCGEK------F 73 (148)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSS--HHHHHHHHHHHHHHHHHSCHH------H
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHcCHH------H
Confidence 344444443 22344444444442 334458888999999987543 466788899999999999643 3
Q ss_pred HHHHHHHHHHHHHHHHHhhh-hhhhhhhhHHHHHHHHHHHhhccccccCCHH
Q psy17497 540 RRGFESRLFQIFTEMHITYV-NLESRLKAEGLRTRVMQVFRAWEDWAVYPKD 590 (806)
Q Consensus 540 r~~fe~~Lp~IF~~l~~~y~-~~~gr~~ae~~k~kV~~VL~iWe~~~vfp~~ 590 (806)
...+... .....|..... ...|......++++|+.+|..|....=..+.
T Consensus 74 h~evas~--~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~ 123 (148)
T 1mhq_A 74 HSEVAKF--RFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPEDIK 123 (148)
T ss_dssp HHHHTSH--HHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhH--HHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCCch
Confidence 3333211 11111111111 0012224578999999999999886433343
No 240
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=52.90 E-value=33 Score=34.73 Aligned_cols=106 Identities=14% Similarity=0.294 Sum_probs=63.6
Q ss_pred HHHHHHhhcCc---chHhHHHHHHH---HhhcccchHHHHHHHHHHhhcccccchhhhhhhhhhhhhhhhcccCCCChhh
Q psy17497 465 RLEDFLRNLTP---ERVKVAEAMVF---CMEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASF 538 (806)
Q Consensus 465 ~Le~lL~~Lt~---tr~sI~~~m~w---~l~ha~~A~eIvd~i~~sl~~~~t~~~kKLa~LYLinDILhNs~~kv~na~~ 538 (806)
.|+.+|...|. .-.+.+-.|.. +-.....+.+.+.+|.+.|...+. ...|.-|-|+.=.+.||....... .
T Consensus 8 ~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~--~v~l~aL~LLe~~vkNcG~~f~~e-i 84 (226)
T 3zyq_A 8 TFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNP--HVALYALEVMESVVKNCGQTVHDE-V 84 (226)
T ss_dssp HHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSH--HHHHHHHHHHHHHHHHHCHHHHHH-H
T ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHhcchHHHHh-h
Confidence 46667776663 22333333333 334445688999999999975433 567788889999999996431100 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhcccc
Q psy17497 539 YRRGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDW 584 (806)
Q Consensus 539 yr~~fe~~Lp~IF~~l~~~y~~~~gr~~ae~~k~kV~~VL~iWe~~ 584 (806)
=.+.|-..|..|. ++.....++++|+.+|..|...
T Consensus 85 as~~fl~~l~~l~-----------~~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 85 ANKQTMEELKDLL-----------KRQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp SSHHHHHHHHHHH-----------HHCCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHh-----------ccCCCHHHHHHHHHHHHHHHHH
Confidence 0112222232231 1223478999999999999874
No 241
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=52.72 E-value=58 Score=30.47 Aligned_cols=104 Identities=14% Similarity=0.276 Sum_probs=60.5
Q ss_pred HHHHHhhcC---cchHhHHHHHHHHh---hcccchHHHHHHHHHHhhcccccchhhhhhhhhhhhhhhhcccCCCChhhH
Q psy17497 466 LEDFLRNLT---PERVKVAEAMVFCM---EHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASFY 539 (806)
Q Consensus 466 Le~lL~~Lt---~tr~sI~~~m~w~l---~ha~~A~eIvd~i~~sl~~~~t~~~kKLa~LYLinDILhNs~~kv~na~~y 539 (806)
|+.++...| .+..+.+-.|..|- .....+.+.+.+|.+.|..... ...+.-|-|+.=.+.||...... ..=
T Consensus 6 ~d~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~--~~ql~AL~LLe~~vkNcG~~f~~-eva 82 (140)
T 3ldz_A 6 FDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDP--HVAMQALTLLGACVSNCGKIFHL-EVC 82 (140)
T ss_dssp THHHHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSH--HHHHHHHHHHHHHHHHSCHHHHH-HHS
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHhcCHHHHH-HHh
Confidence 334444444 23444555555442 2223578889999999876433 55677788998899999643110 000
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhcccc
Q psy17497 540 RRGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDW 584 (806)
Q Consensus 540 r~~fe~~Lp~IF~~l~~~y~~~~gr~~ae~~k~kV~~VL~iWe~~ 584 (806)
.+.|-..|..++ .. ....++++|+.+|..|...
T Consensus 83 s~~Fl~el~~l~---~~---------~~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 83 SRDFASEVSNVL---NK---------GHPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp SHHHHHHHHHHH---HH---------SCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHh---cc---------CCHHHHHHHHHHHHHHHHH
Confidence 122333333332 11 1367999999999999764
No 242
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=38.21 E-value=79 Score=31.61 Aligned_cols=77 Identities=13% Similarity=0.293 Sum_probs=51.7
Q ss_pred hcccchHHHHHHHHHHhhcccccchhhhhhhhhhhhhhhhcccCCCChhhHHHH-----HHHHHHHHHHHHHHhhhhhhh
Q psy17497 489 EHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASFYRRG-----FESRLFQIFTEMHITYVNLES 563 (806)
Q Consensus 489 ~ha~~A~eIvd~i~~sl~~~~t~~~kKLa~LYLinDILhNs~~kv~na~~yr~~-----fe~~Lp~IF~~l~~~y~~~~g 563 (806)
.....+.+.+..|.+.|..... ...|.-|.|+.-++.||... |... |-..|..++. .
T Consensus 35 ~~~~~~k~a~r~l~krl~~~n~--~~~l~aL~Lle~~vkNcG~~------f~~eva~~~fl~~l~~l~~---~------- 96 (220)
T 1dvp_A 35 QKDVTPKNAFAAIKKKMNSPNP--HSSCYSLLVLESIVKNCGAP------VHEEVFTKENCEMFSSFLE---S------- 96 (220)
T ss_dssp TTSSCHHHHHHHHHHHHTCSSH--HHHHHHHHHHHHHHHHSHHH------HHHHHSSHHHHHHHHHHHH---H-------
T ss_pred CCCcCHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHhccCHH------HHHHHHhHHHHHHHHHHhc---C-------
Confidence 3344688899999988876433 66788899999999999643 3222 2222333321 1
Q ss_pred hhhhHHHHHHHHHHHhhcccc
Q psy17497 564 RLKAEGLRTRVMQVFRAWEDW 584 (806)
Q Consensus 564 r~~ae~~k~kV~~VL~iWe~~ 584 (806)
-....++++++.+++.|...
T Consensus 97 -~~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 97 -TPHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp -CSCHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHHHHH
Confidence 12467899999999999764
No 243
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=36.93 E-value=66 Score=26.36 Aligned_cols=68 Identities=22% Similarity=0.410 Sum_probs=42.9
Q ss_pred EEEEcCC-CCCCcHHHHHHHhccCCC-----eeEEEEeCCCCccccCCcccEEEEEecChHHHHHHHHHhCCceeCCeeE
Q psy17497 197 NLYLGNL-NPKITEQQLMEIFGRYGP-----LASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270 (806)
Q Consensus 197 tLfVgNL-p~~vte~~L~~~F~~fG~-----I~sVkI~~Pr~d~~tg~~rg~aFV~F~~~~dAe~Ai~~LnG~~l~Gr~L 270 (806)
+|||+.= -..+...+|..++..-+. |-.|.|. -.|.||+-.. ..+..++..|++..+.|+.+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-----------d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~ 69 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-----------DNASYVEILN-GKGPHVLKVMKNTTVKGKQL 69 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-----------SSCEEEEECT-TCHHHHHHHHTTCCC---CC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-----------CCcEEEEECH-HHHHHHHHHhccccCcCceE
Confidence 4565311 245666777777765444 5566765 3689999875 56788999999999999999
Q ss_pred EEEecc
Q psy17497 271 KLGWGK 276 (806)
Q Consensus 271 rV~~ak 276 (806)
+|..++
T Consensus 70 ~v~~~~ 75 (76)
T 2g0c_A 70 KVNKAN 75 (76)
T ss_dssp CEEECC
T ss_pred EEEECC
Confidence 987654
No 244
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=35.40 E-value=7.9 Score=34.49 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=0.0
Q ss_pred CCCCEEEEcCCCCCCcHHH
Q psy17497 193 PCTTNLYLGNLNPKITEQQ 211 (806)
Q Consensus 193 p~~ttLfVgNLp~~vte~~ 211 (806)
...++|||+|||+.+|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 4467899999999999864
No 245
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=29.79 E-value=57 Score=31.11 Aligned_cols=104 Identities=13% Similarity=0.270 Sum_probs=60.3
Q ss_pred HHHHHhhcCc---chHhHHHHHHHHh---hcccchHHHHHHHHHHhhcccccchhhhhhhhhhhhhhhhcccCCCChhhH
Q psy17497 466 LEDFLRNLTP---ERVKVAEAMVFCM---EHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASFY 539 (806)
Q Consensus 466 Le~lL~~Lt~---tr~sI~~~m~w~l---~ha~~A~eIvd~i~~sl~~~~t~~~kKLa~LYLinDILhNs~~kv~na~~y 539 (806)
+..+|...|. ...+.+-.+..|- .....+.+.+.+|.+.|.. ..+....+.-|-|+.=.+.||... |
T Consensus 17 ~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~-~~n~~v~l~AL~LLd~~vkNcG~~------f 89 (157)
T 1elk_A 17 VGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVG-NKNFHEVMLALTVLETCVKNCGHR------F 89 (157)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHSCHH------H
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhCHH------H
Confidence 4555555552 2234444443332 2234588899999988862 122355688899999999999643 3
Q ss_pred HHHHH-----HH-HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhccccc
Q psy17497 540 RRGFE-----SR-LFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWA 585 (806)
Q Consensus 540 r~~fe-----~~-Lp~IF~~l~~~y~~~~gr~~ae~~k~kV~~VL~iWe~~~ 585 (806)
...+. .. |..++ ...+ -....++++|..+|..|....
T Consensus 90 h~eva~~~fl~e~Lvk~~---~~k~------~~~~~Vk~kil~li~~W~~~f 132 (157)
T 1elk_A 90 HVLVASQDFVESVLVRTI---LPKN------NPPTIVHDKVLNLIQSWADAF 132 (157)
T ss_dssp HHHHTSHHHHHHHTHHHH---STTT------CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHh---ccCC------CCcHHHHHHHHHHHHHHHHHc
Confidence 33222 11 22221 1101 113578999999999998753
No 246
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=27.03 E-value=1.5e+02 Score=28.17 Aligned_cols=107 Identities=13% Similarity=0.229 Sum_probs=59.7
Q ss_pred HHHHHhhcC---cchHhHHHHHHHHh---hcccchHHHHHHHHHHhhcccccchhhhhhhhhhhhhhhhcccCCCChhhH
Q psy17497 466 LEDFLRNLT---PERVKVAEAMVFCM---EHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASFY 539 (806)
Q Consensus 466 Le~lL~~Lt---~tr~sI~~~m~w~l---~ha~~A~eIvd~i~~sl~~~~t~~~kKLa~LYLinDILhNs~~kv~na~~y 539 (806)
++.+|...| .+.++.+-.+.+|- .....+.+.+.+|.+.|... .+....+.-|-|+.=.+.||... |
T Consensus 17 ~~~~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~~~-~n~~~~l~AL~LLe~cvkNCG~~------f 89 (152)
T 3rru_A 17 VGHLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKN-YNHKEIQLTLSLIDMCVQNCGPS------F 89 (152)
T ss_dssp HHHHHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTTC-CBHHHHHHHHHHHHHHHHHSCHH------H
T ss_pred HHHHHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHHhcCHH------H
Confidence 445555544 23344444444442 23345788889999888621 12233344677888899999643 3
Q ss_pred HHHHHHHHHHHHHHHHH-hhhhhhhh-hhhHHHHHHHHHHHhhcccc
Q psy17497 540 RRGFESRLFQIFTEMHI-TYVNLESR-LKAEGLRTRVMQVFRAWEDW 584 (806)
Q Consensus 540 r~~fe~~Lp~IF~~l~~-~y~~~~gr-~~ae~~k~kV~~VL~iWe~~ 584 (806)
...+.+ ++++.. ..+-+..+ -....+|++|+.+|..|...
T Consensus 90 h~eias-----k~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 90 QSLIVK-----KEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHSS-----HHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHh-----hHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 333321 122222 11212222 12357999999999999874
No 247
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=22.03 E-value=1.8e+02 Score=32.04 Aligned_cols=89 Identities=13% Similarity=0.144 Sum_probs=63.4
Q ss_pred HhHHHHHH-HHhhcccchHHHHHHHHHHhhcccccchhhhhhhhhhhhhhhhcccCCCChhhHHHHHHHHHHHHHHHHHH
Q psy17497 478 VKVAEAMV-FCMEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASFYRRGFESRLFQIFTEMHI 556 (806)
Q Consensus 478 ~sI~~~m~-w~l~ha~~A~eIvd~i~~sl~~~~t~~~kKLa~LYLinDILhNs~~kv~na~~yr~~fe~~Lp~IF~~l~~ 556 (806)
..++.|+. |+-....-+..++..|..+.-.. ...|.+..|..+.+||-.... ..|..++..+|..++.
T Consensus 277 ~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~t--ns~KevlFL~eleeiLe~~~~---------~~f~~i~~~lF~~la~ 345 (392)
T 2jak_A 277 PQLAYCVVQFLEKDSTLTEPVVMALLKYWPKT--HSPKEVMFLNELEEILDVIEP---------SEFVKIMEPLFRQLAK 345 (392)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHSSCSS--CCTTHHHHHHHHHHHHHTCCH---------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHhCCCC--CchHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHH
Confidence 34555544 55555666888888888777554 448889999999999987643 3688888999988887
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHhhccccc
Q psy17497 557 TYVNLESRLKAEGLRTRVMQVFRAWEDWA 585 (806)
Q Consensus 557 ~y~~~~gr~~ae~~k~kV~~VL~iWe~~~ 585 (806)
+..+.. -+-..+.|.+|..-.
T Consensus 346 ci~S~h--------fqVAErAL~~wnNe~ 366 (392)
T 2jak_A 346 CVSSPH--------FQVAERALYYWNNEY 366 (392)
T ss_dssp HHTCSS--------HHHHHHHHGGGGCHH
T ss_pred HHcCCc--------HHHHHHHHHHhCcHH
Confidence 754432 235577899997743
Done!