Your job contains 1 sequence.
>psy17497
MDRATMKKQIAEQKLKAFSIGSMGAKRTLSKKEQEEQKKKEQEAAAAQAFEEFVATFQEN
PAAKTNKVWVKAGTYDAGRRREDTSEKGKLYKPQSRLQEDKDSSASKAEEYARLLGDKKT
ESQRLKKNNKIDIKKKSNLEMFKEELKMIQEEREERHKYKGVLKGVYSEEAEPPSAIAIY
QEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGR
NCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVPIPSYPIYIPPKMLELTVPPPP
SGLPFNAQPASKDKHRIPKLRPGEPLTREDLDRLDQILNQAYVKVVVPTDRTLLMLIHRM
VEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSILQGDQPKEWRTNEF
RMFDGGSVWRPPPMNLFTQGMPDELVEEEVESKTKGSLSNSQRHRLEDFLRNLTPERVKV
AEAMVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASFYR
RGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWAVYPKDYLIKLQNVFL
GLSDAVPLDANNGNEEDEDLDGAPLSDVDGEDLDGVPLDGAALMKSLQRLPHSSSAPDED
DIDGVPCTYNITSATMDGEDLDGVPMDKVKPARAATFIPSKWETVEENEDSAVTSSKWDD
VEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKKSP
SPAAREEKKEANKSERSDRKKSPSPV
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy17497
(806 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0034572 - symbol:CG9346 species:7227 "Drosophila m... 1922 1.0e-204 2
UNIPROTKB|E1C0P9 - symbol:U2SURP "Uncharacterized protein... 1650 8.3e-177 2
UNIPROTKB|F1SKE6 - symbol:U2SURP "Uncharacterized protein... 1657 1.7e-176 2
MGI|MGI:1915208 - symbol:U2surp "U2 snRNP-associated SURP... 1653 1.7e-176 2
UNIPROTKB|O15042 - symbol:U2SURP "U2 snRNP-associated SUR... 1654 3.6e-176 2
ZFIN|ZDB-GENE-070912-400 - symbol:u2surp "U2 snRNP-associ... 1659 7.4e-176 2
UNIPROTKB|E2R1V3 - symbol:U2SURP "Uncharacterized protein... 1650 9.4e-176 2
RGD|1307882 - symbol:U2surp "U2 snRNP-associated SURP dom... 1643 2.0e-175 2
UNIPROTKB|E7ET15 - symbol:U2SURP "U2 snRNP-associated SUR... 1644 4.1e-175 2
UNIPROTKB|F1MHP1 - symbol:U2SURP "Uncharacterized protein... 1657 1.9e-170 1
ZFIN|ZDB-GENE-070410-141 - symbol:zgc:163098 "zgc:163098"... 1435 3.1e-153 2
WB|WBGene00015581 - symbol:C07H6.4 species:6239 "Caenorha... 574 3.7e-100 2
UNIPROTKB|C9JB80 - symbol:U2SURP "U2 snRNP-associated SUR... 949 2.0e-95 1
TAIR|locus:2179295 - symbol:RRC1 "reduced red-light respo... 817 2.7e-86 2
TAIR|locus:2183775 - symbol:AT5G10800 species:3702 "Arabi... 763 1.0e-75 1
UNIPROTKB|H0Y8D9 - symbol:U2SURP "U2 snRNP-associated SUR... 690 5.6e-68 1
UNIPROTKB|E7EW00 - symbol:U2SURP "U2 snRNP-associated SUR... 652 6.0e-64 1
DICTYBASE|DDB_G0281687 - symbol:DDB_G0281687 "U2 snRNP-as... 424 3.5e-52 4
DICTYBASE|DDB_G0293252 - symbol:DDB_G0293252 "putative RN... 213 1.3e-20 2
ASPGD|ASPL0000075677 - symbol:AN4943 species:162425 "Emer... 200 7.0e-19 2
UNIPROTKB|G4MV79 - symbol:MGG_15600 "Uncharacterized prot... 168 3.9e-14 2
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 178 2.3e-10 1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin... 124 2.5e-09 2
TAIR|locus:2116322 - symbol:ATRBP45C species:3702 "Arabid... 169 2.7e-09 1
POMBASE|SPBC11C11.01 - symbol:SPBC11C11.01 "U2-associated... 148 2.7e-09 2
DICTYBASE|DDB_G0268004 - symbol:snrp70 "U1 small nuclear ... 125 1.8e-08 2
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 137 3.8e-08 1
MGI|MGI:106417 - symbol:Cherp "calcium homeostasis endopl... 110 5.6e-08 3
DICTYBASE|DDB_G0291966 - symbol:DDB_G0291966 "CCHC-type z... 119 5.7e-08 2
RGD|1305279 - symbol:Cherp "calcium homeostasis endoplasm... 110 5.8e-08 3
UNIPROTKB|F1NDZ9 - symbol:CHERP "Uncharacterized protein"... 108 8.1e-08 3
TAIR|locus:2027372 - symbol:RBP45B species:3702 "Arabidop... 154 1.1e-07 1
UNIPROTKB|Q9LEB4 - symbol:RBP45 "Polyadenylate-binding pr... 160 1.2e-07 2
TAIR|locus:2014340 - symbol:UBP1A "oligouridylate-binding... 153 1.6e-07 1
UNIPROTKB|Q9LEB3 - symbol:RBP47 "Polyadenylate-binding pr... 152 2.1e-07 1
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 126 2.8e-07 2
TAIR|locus:2015398 - symbol:RBP47C' "RNA-binding protein ... 151 2.8e-07 1
UNIPROTKB|Q8IWX8 - symbol:CHERP "Calcium homeostasis endo... 108 3.4e-07 3
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 138 3.4e-07 2
UNIPROTKB|J9NZK1 - symbol:CHERP "Uncharacterized protein"... 108 4.2e-07 3
UNIPROTKB|J3QK89 - symbol:CHERP "Calcium homeostasis endo... 108 4.4e-07 3
TAIR|locus:2087457 - symbol:AT3G14100 species:3702 "Arabi... 149 4.5e-07 1
UNIPROTKB|E2RHU5 - symbol:CHERP "Uncharacterized protein"... 108 4.6e-07 3
UNIPROTKB|E7ETC0 - symbol:TIAL1 "Nucleolysin TIAR" specie... 126 5.7e-07 1
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 150 6.7e-07 1
UNIPROTKB|A8E648 - symbol:CHERP "CHERP protein" species:9... 108 6.7e-07 3
TAIR|locus:2015403 - symbol:RBP47C "RNA-binding protein 4... 147 7.5e-07 1
UNIPROTKB|E2RIB8 - symbol:RBM28 "Uncharacterized protein"... 121 1.1e-06 3
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi... 122 1.5e-06 1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi... 122 1.5e-06 1
UNIPROTKB|H0YBQ4 - symbol:PABPC1 "Polyadenylate-binding p... 138 2.1e-06 1
TAIR|locus:2012211 - symbol:RBP47A "RNA-binding protein 4... 150 2.1e-06 2
SGD|S000000416 - symbol:NGR1 "RNA binding protein that ne... 145 2.5e-06 1
ZFIN|ZDB-GENE-070822-11 - symbol:zgc:171310 "zgc:171310" ... 109 2.7e-06 2
TAIR|locus:2094098 - symbol:RBP47B "RNA-binding protein 4... 142 2.7e-06 1
RGD|1307411 - symbol:Rbm18 "RNA binding motif protein 18"... 130 2.8e-06 1
UNIPROTKB|P09406 - symbol:snrnp70 "U1 small nuclear ribon... 106 2.9e-06 2
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi... 122 3.1e-06 1
WB|WBGene00004701 - symbol:rsp-4 species:6239 "Caenorhabd... 112 3.2e-06 2
UNIPROTKB|Q09511 - symbol:rsp-4 "Probable splicing factor... 112 3.2e-06 2
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi... 119 3.2e-06 1
UNIPROTKB|F1NH82 - symbol:F1NH82 "Uncharacterized protein... 141 3.9e-06 1
UNIPROTKB|G4NFS0 - symbol:MGG_08741 "tRNA selenocysteine-... 137 4.1e-06 2
UNIPROTKB|E1BQ47 - symbol:RBM18 "Uncharacterized protein"... 129 4.1e-06 1
UNIPROTKB|J9NUA3 - symbol:RBM18 "Uncharacterized protein"... 129 4.1e-06 1
UNIPROTKB|Q96H35 - symbol:RBM18 "Probable RNA-binding pro... 129 4.1e-06 1
MGI|MGI:1915139 - symbol:Rbm18 "RNA binding motif protein... 129 4.1e-06 1
FB|FBgn0261872 - symbol:scaf6 species:7227 "Drosophila me... 102 4.2e-06 3
TAIR|locus:2018794 - symbol:UBP1B "oligouridylate binding... 140 4.2e-06 1
UNIPROTKB|O93235 - symbol:cirbp-a "Cold-inducible RNA-bin... 115 4.9e-06 2
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 142 5.0e-06 1
UNIPROTKB|F1NIR6 - symbol:NCBP2 "Nuclear cap-binding prot... 117 5.3e-06 1
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 141 5.4e-06 1
UNIPROTKB|Q3ZCC5 - symbol:RBM18 "Probable RNA-binding pro... 128 5.6e-06 1
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 141 6.3e-06 1
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 141 6.3e-06 1
UNIPROTKB|F1SLQ8 - symbol:RBM18 "Uncharacterized protein"... 127 7.6e-06 1
MGI|MGI:1891706 - symbol:Spen "SPEN homolog, transcriptio... 108 8.1e-06 2
ASPGD|ASPL0000061196 - symbol:AN10164 species:162425 "Eme... 138 8.6e-06 1
UNIPROTKB|Q3ZBJ1 - symbol:NCBP2 "Nuclear cap-binding prot... 115 8.6e-06 1
UNIPROTKB|E2RFC9 - symbol:NCBP2 "Uncharacterized protein"... 115 8.6e-06 1
UNIPROTKB|H0YAP2 - symbol:PABPC1 "Polyadenylate-binding p... 115 8.6e-06 1
UNIPROTKB|P52298 - symbol:NCBP2 "Nuclear cap-binding prot... 115 8.6e-06 1
UNIPROTKB|F2Z5Q9 - symbol:NCBP2 "Uncharacterized protein"... 115 8.6e-06 1
MGI|MGI:1915342 - symbol:Ncbp2 "nuclear cap binding prote... 115 8.6e-06 1
RGD|1596188 - symbol:Ncbp2 "nuclear cap binding protein s... 115 8.6e-06 1
ZFIN|ZDB-GENE-040407-1 - symbol:cherp "calcium homeostasi... 102 8.7e-06 3
DICTYBASE|DDB_G0291444 - symbol:DDB_G0291444 species:4468... 116 8.9e-06 2
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"... 122 9.2e-06 1
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi... 122 9.2e-06 1
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"... 122 9.2e-06 1
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi... 122 9.2e-06 1
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 139 1.0e-05 1
UNIPROTKB|Q8NDT2 - symbol:RBM15B "Putative RNA-binding pr... 120 1.0e-05 3
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ... 114 1.1e-05 1
UNIPROTKB|F1LVK5 - symbol:F1LVK5 "Uncharacterized protein... 131 1.2e-05 1
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p... 138 1.2e-05 1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi... 122 1.2e-05 1
UNIPROTKB|E7ERJ7 - symbol:PABPC1 "Polyadenylate-binding p... 138 1.2e-05 1
ZFIN|ZDB-GENE-040426-1764 - symbol:rbm18 "RNA binding mot... 125 1.3e-05 1
WARNING: Descriptions of 190 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0034572 [details] [associations]
symbol:CG9346 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
SMART:SM00360 SMART:SM00648 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464
eggNOG:COG0724 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 EMBL:AY069521
UniGene:Dm.2090 ProteinModelPortal:Q7K0X5 PaxDb:Q7K0X5 PRIDE:Q7K0X5
FlyBase:FBgn0034572 InParanoid:Q7K0X5 OrthoDB:EOG469P8S
ArrayExpress:Q7K0X5 Bgee:Q7K0X5 Uniprot:Q7K0X5
Length = 958
Score = 1922 (681.6 bits), Expect = 1.0e-204, Sum P(2) = 1.0e-204
Identities = 397/751 (52%), Positives = 510/751 (67%)
Query: 4 ATMKKQIAEQKLKAFSIGSMGAKRTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPAA 63
AT+K+ I+E+KL+AF++G+ +KR LS P
Sbjct: 17 ATLKR-ISEKKLEAFTVGTF-SKRQLSKKELEDQKKKEDAAAAAHAFKEFVETFQDAPTP 74
Query: 64 KTNKVWVKAGTYDAGRRREDTSEKGKLYKPQSRLQEDKDSSASKAEEYARLLG-DKKTES 122
++KVWVKAGTYDAG RRED SEKGKLYKP S+L E SS+ K E+YA+ L D K +S
Sbjct: 75 -SSKVWVKAGTYDAGSRREDKSEKGKLYKPVSKLMEK--SSSDKVEDYAKTLASDLKKDS 131
Query: 123 QRLXXXXXXXXXXXSNLEMFKEELKMIQEEREERHKYKGVLKGVYSEEAEPPSAIAI--- 179
L SNLE+FKEEL+ IQEEREERHKYK + +S A+ P+A A
Sbjct: 132 GPLKKKNQEKKK--SNLELFKEELRQIQEEREERHKYKHMASS-HSAPAQQPAASAAPVP 188
Query: 180 -----------YQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIM 228
+ GSFD+GDP TTNLYLGNLNPKI+EQQLMEIFGRYGPLASIKIM
Sbjct: 189 SSSVSTTSQNSSSSKESGSFDTGDPNTTNLYLGNLNPKISEQQLMEIFGRYGPLASIKIM 248
Query: 229 WPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVXXXXXXXXXX 288
WPRS+EEK RGRNCGFVA+M+RKD ERALK LNG+ + YEM+LGWGK+V
Sbjct: 249 WPRSEEEKQRGRNCGFVAYMSRKDAERALKTLNGRYIMGYEMRLGWGKTVPIMNTPIFTP 308
Query: 289 XKMLELTVPPPPSGLPFNAQPASKDKHRIPKLRPGEPLTREDLDRLDQILNQAYVKVVVP 348
+LE+T+PPPPSGLPFNAQP + +PK E +ED + +++IL + VKV +P
Sbjct: 309 QALLEMTLPPPPSGLPFNAQPPPSEADVLPKKNYKE-FNQEDKENMERILAKCVVKVHIP 367
Query: 349 TDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSILQ 408
T++ +L +IHRM+EFV+REGPMFEA+IM +E+ NPL+ FLF+N+SPAHIYYRWK++S+LQ
Sbjct: 368 TEKAVLNVIHRMIEFVIREGPMFEALIMIREMENPLFAFLFDNESPAHIYYRWKLFSLLQ 427
Query: 409 GDQPKEWRTNEFRMFDGGSVWRPPPMNLFTQGMPDELV-EEEVESKTKGSLSNSQRHRLE 467
GD P EWR EFRMF G VW+PP N +TQGMPDELV + + KG+LSN+QR+RLE
Sbjct: 428 GDTPNEWREEEFRMFKNGPVWKPPIANFYTQGMPDELVVDPDAPVVHKGALSNAQRNRLE 487
Query: 468 DFLRNLTPERVKVAEAMVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILH 527
D +R+LTPER ++ +AM+FC+EH+DAA+EICECI ESLSN +T KKI RLYL+SDILH
Sbjct: 488 DLIRHLTPERARIGDAMIFCIEHADAADEICECIAESLSNINTLASKKIARLYLISDILH 547
Query: 528 NCGIKISNASFYRRGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWAVY 587
NC +K++NASF+R+ E +L IF +H Y+N+ESRLKAEG ++RV V R WE+W +Y
Sbjct: 548 NCTVKVANASFFRKSVEKQLLDIFDNLHNYYLNIESRLKAEGFKSRVCNVIRTWEEWTIY 607
Query: 588 PKDYLIKLQNVFLGLSDAVPLDANNGNEE-------DEDLDGAPLS--DVDGEDLDGVPL 638
PKD++ +L FLG P++ + EE DED+DGAPLS + D EDLDGVPL
Sbjct: 608 PKDFMAQLTAKFLGKPYVKPVNNSPQAEETRFDEALDEDIDGAPLSGEEKDDEDLDGVPL 667
Query: 639 DGAALMKS-LQR-LPHSSSA-PDEDDIDGVPCTYNITSATMDGEDLDGVPMDKV--KPAR 693
DGAAL+KS L+R +P + + P D I +D +DLDGVP++K A+
Sbjct: 668 DGAALLKSALKRAIPDADAGTPKRDTPKKDEYLDEIDGIPLD-DDLDGVPLEKETKSTAK 726
Query: 694 AATFIPSKWETVEEN--EDSAVTSSKWDDVE 722
FIPSKWETV+ E A+T+SKWD ++
Sbjct: 727 LPGFIPSKWETVDPQQVEAQAITTSKWDTLD 757
Score = 81 (33.6 bits), Expect = 1.0e-204, Sum P(2) = 1.0e-204
Identities = 25/87 (28%), Positives = 41/87 (47%)
Query: 723 QSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREE----KKEANKSERSDRKK 778
+S S+ S+S +G S RR D S E + + +R K+ +S RS R +
Sbjct: 860 RSSSRKRSHSPFSGGESKRR-DYSPETSRSSKSSKRNRSRSPSSSPKRYTERSSRSSRYE 918
Query: 779 SPSPAAREEKKEANKSERSDRKKSPSP 805
+P+ + + S RS R++ PSP
Sbjct: 919 TPASGSSRSRSSPTSS-RSSRREEPSP 944
Score = 66 (28.3 bits), Expect = 3.9e-203, Sum P(2) = 3.9e-203
Identities = 24/82 (29%), Positives = 41/82 (50%)
Query: 723 QSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKKSPSP 782
+S+S S S +SSR+ S G+S D + E ++KS + +R +SPS
Sbjct: 846 KSKSSKVSESPALFRSSSRKRS-HSPFSGGESKRRDYSP--ETSRSSKSSKRNRSRSPSS 902
Query: 783 AAREEKKEANKSERSDRKKSPS 804
+ K+ +S RS R ++P+
Sbjct: 903 SP---KRYTERSSRSSRYETPA 921
Score = 56 (24.8 bits), Expect = 4.4e-202, Sum P(2) = 4.4e-202
Identities = 21/80 (26%), Positives = 32/80 (40%)
Query: 716 SKWDDVEQSESKDDSNSKGTGLTS-SRRGDLSSERIQGDSGEDDSAAREEKKEANK-SER 773
SK D S+ +SK S S +ER S + A+ + ++ S R
Sbjct: 876 SKRRDYSPETSRSSKSSKRNRSRSPSSSPKRYTERSSRSSRYETPASGSSRSRSSPTSSR 935
Query: 774 SDRKKSPSPAAREEKKEANK 793
S R++ PSP K +K
Sbjct: 936 SSRREEPSPPRHRSDKHKHK 955
>UNIPROTKB|E1C0P9 [details] [associations]
symbol:U2SURP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
SMART:SM00360 SMART:SM00648 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 OMA:SILQANS
GeneTree:ENSGT00390000010687 EMBL:AADN02024092 EMBL:AADN02024093
EMBL:AADN02024094 IPI:IPI00583949 ProteinModelPortal:E1C0P9
Ensembl:ENSGALT00000004113 Uniprot:E1C0P9
Length = 985
Score = 1650 (585.9 bits), Expect = 8.3e-177, Sum P(2) = 8.3e-177
Identities = 358/784 (45%), Positives = 480/784 (61%)
Query: 10 IAEQKLKAFSIGSMGA-KRTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPAAKTNKV 68
+ E KLKAFSIG M A KRTLS + K K
Sbjct: 33 LMESKLKAFSIGKMSAAKRTLSKKEQEELKKKEDEKAAAEIYEEFLAAFEGSDGNKV-KT 91
Query: 69 WVKAGTYDAGRRREDTSEK-GKLYKPQSRLQEDKDSSASKAEEYARLLGDKKTESQRLXX 127
+V+ G +A + +T EK GK+YKP SR + K+ + + E L E+++
Sbjct: 92 FVRGGIVNASKEEHETDEKRGKIYKPSSRFSDQKNQPSQPSNEKPPSL--LMIETKKPPL 149
Query: 128 XXXXXXXXXSNLEMFKEELKMIQEEREERHKYKGVLKGVYSEEAEP---------PS--- 175
SNLE+FKEELK IQEER+ERHK KG L +++ PS
Sbjct: 150 KKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLSRFEPPQSDSDGQRRSMDAPSRRN 209
Query: 176 -AIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDE 234
+ + + GS D GDP TTNLYLGN+NP++ E+ L + FGR+GPLAS+KIMWPR+DE
Sbjct: 210 RSSGVLDDYAPGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDE 269
Query: 235 EKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVXXXXXXXXXXXKMLEL 294
E+AR RNCGFVAFMNR+D ERALK LNGK + S+EMKLGWGK+V M+E
Sbjct: 270 ERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPPHPIYIPPSMMEH 329
Query: 295 TVPPPPSGLPFNAQPASKDKH-RIPKLRPGEPLTREDLDRLDQILNQAYVKVVVPTDRTL 353
T+PPPPSGLPFNAQP + K+ P L P P +ED ++ L+QA VKVV+PT+R L
Sbjct: 330 TLPPPPSGLPFNAQPRERLKNPNAPMLPP--PKNKEDFEKT---LSQAIVKVVIPTERNL 384
Query: 354 LMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSILQGDQPK 413
L LIHRM+EFVVREGPMFEAMIMN+EI+NP++RFLFENQ+PAH+YYRWK+YSILQGD P
Sbjct: 385 LALIHRMIEFVVREGPMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSILQGDAPT 444
Query: 414 EWRTNEFRMFDGGSVWRPPPMNLFTQGMPDELVEEEV--ESKTKGSLSNSQRHRLEDFLR 471
+WRT +FRMF GS WRPPP+N + GM +E E E KG+L QR +LE+ LR
Sbjct: 445 KWRTEDFRMFKNGSFWRPPPLNPYLHGMSEEQETEAFVEEPNKKGALKEEQRDKLEEILR 504
Query: 472 NLTPERVKVAEAMVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGI 531
LTP + + +AMVFC+ +++AAEEI +CI ESLS T L KKI RLYLVSD+L+N
Sbjct: 505 GLTPRKNDIGDAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSDVLYNSSA 564
Query: 532 KISNASFYRRGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWAVYPKDY 591
K++NAS+YR+ FE++L QIF++++ TY ++ L++E + RVM FRAWEDWA+YP+ +
Sbjct: 565 KVANASYYRKFFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDWAIYPEPF 624
Query: 592 LIKLQNVFLGLSDAVPLDANNGNEEDEDLDGAPLSD-VDG---EDLDGVPLDGAALMKSL 647
LIKLQN+FLGL + ++ E +DLDGAP+ + +DG ED+DG+P+D AA + L
Sbjct: 625 LIKLQNIFLGLVNI--MEDKETEEVPDDLDGAPIEEELDGAPLEDVDGIPID-AAPIDDL 681
Query: 648 QRLPHSSSAPDEDDIDGVPCTYNITSATMDGEDLDGVPMDKVKPA-----RAATFIPSKW 702
+P S +DD+DGVP + + E + V K + A SKW
Sbjct: 682 DGVPIKSL---DDDLDGVPL--DTAEDSKKNEPIFKVAPSKWEAVDESELEAQAVTTSKW 736
Query: 703 ETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAR 762
E +++E+S + E+SE ++D+ S + + E + S S
Sbjct: 737 ELFDQHEESEEEEIP-NQEEESEDEEDTQSSKSEEQHMYSNPIKEEMPESKSSVKYSEMS 795
Query: 763 EEKK 766
EEK+
Sbjct: 796 EEKR 799
Score = 89 (36.4 bits), Expect = 8.3e-177, Sum P(2) = 8.3e-177
Identities = 23/85 (27%), Positives = 37/85 (43%)
Query: 720 DVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKKS 779
D E+S+S+ + T +R+ S S +R K + KSERS+R
Sbjct: 859 DKEKSDSRSKDKKEKEECTPTRKERRKRRHSNSPSPSRSSGSRRAKSPSPKSERSERSHK 918
Query: 780 PSPAAREEKKEANKSERSDRKKSPS 804
S +R K++ + K+SPS
Sbjct: 919 ESSRSRSSHKDSPRDVSKKGKRSPS 943
Score = 81 (33.6 bits), Expect = 5.8e-176, Sum P(2) = 5.8e-176
Identities = 29/107 (27%), Positives = 46/107 (42%)
Query: 703 ETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAR 762
E VE D + K ++E+ +D + + + S + + E E
Sbjct: 831 EQVEHYRDKLLQREKEKELERERERDKKDKEKSDSRSKDKKE--KEECTPTRKERRKRRH 888
Query: 763 EEKKEANKSERSDRKKSPSPAA-REEK--KEANKSERSDRKKSPSPV 806
++S S R KSPSP + R E+ KE+++S RS K SP V
Sbjct: 889 SNSPSPSRSSGSRRAKSPSPKSERSERSHKESSRS-RSSHKDSPRDV 934
Score = 73 (30.8 bits), Expect = 4.1e-175, Sum P(2) = 4.1e-175
Identities = 22/95 (23%), Positives = 44/95 (46%)
Query: 706 EENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEK 765
++ E T ++ + ++ S S S+ +G ++ SER + S ++ S +R
Sbjct: 869 DKKEKEECTPTRKERRKRRHSNSPSPSRSSGSRRAKSPSPKSERSER-SHKESSRSRSSH 927
Query: 766 KEANKSERSDRKKSPSPAAREEKKEANKSERSDRK 800
K++ + K+SPS +R K+ RS +K
Sbjct: 928 KDSPRDVSKKGKRSPS-GSRTPKRSRRSRSRSPKK 961
Score = 60 (26.2 bits), Expect = 9.6e-174, Sum P(2) = 9.6e-174
Identities = 20/79 (25%), Positives = 33/79 (41%)
Query: 715 SSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSERS 774
S K + E+S K+ S S+ + S R +R S + R + KS +
Sbjct: 907 SPKSERSERSH-KESSRSRSSHKDSPRDVSKKGKRSPSGSRTPKRSRRSRSRSPKKSGKK 965
Query: 775 DRKKSPSPAAREEKKEANK 793
R +S SP +K + +K
Sbjct: 966 SRSQSRSPHRSHKKSKKSK 984
>UNIPROTKB|F1SKE6 [details] [associations]
symbol:U2SURP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170
Pfam:PF08312 CTD:23350 KO:K12842 OMA:SILQANS
GeneTree:ENSGT00390000010687 EMBL:FP236268 RefSeq:XP_003358644.1
Ensembl:ENSSSCT00000012792 GeneID:100517309 KEGG:ssc:100517309
Uniprot:F1SKE6
Length = 1029
Score = 1657 (588.4 bits), Expect = 1.7e-176, Sum P(2) = 1.7e-176
Identities = 364/800 (45%), Positives = 493/800 (61%)
Query: 6 MKKQIAEQKLKAFSIGSMG-AKRTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPAAK 64
+ K + E KLKAFSIG M AKRTLS + K
Sbjct: 72 LSKPLLENKLKAFSIGKMSTAKRTLSKKEQEELKKKEDEKAAAEIYEEFLAAFEGSDGNK 131
Query: 65 TNKVWVKAGTYDAGRRREDTSEK-GKLYKPQSRLQEDKDS-SASKAEEYARLLGDKKTES 122
K +V+ G +A + +T EK GK+YKP SR + K+ + S E LL E+
Sbjct: 132 V-KTFVRGGVVNAAKEEHETDEKRGKIYKPSSRFADQKNPPNQSSNERPPSLL---VIET 187
Query: 123 QRLXXXXXXXXXXXSNLEMFKEELKMIQEEREERHKYKGVLKGVYSEEAEP--------- 173
++ SNLE+FKEELK IQEER+ERHK KG L +++
Sbjct: 188 KKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLSRFEPPQSDSDGQRRSMDA 247
Query: 174 PS----AIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMW 229
PS + + + GS D GDP TTNLYLGN+NP++ E+ L + FGR+GPLAS+KIMW
Sbjct: 248 PSRRNRSSGVLDDYAPGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMW 307
Query: 230 PRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVXXXXXXXXXXX 289
PR+DEE+AR RNCGFVAFMNR+D ERALK LNGK + S+EMKLGWGK+V
Sbjct: 308 PRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPPHPIYIPP 367
Query: 290 KMLELTVPPPPSGLPFNAQPASKDKH-RIPKLRPGEPLTREDLDRLDQILNQAYVKVVVP 348
M+E T+PPPPSGLPFNAQP + K+ P L P P +ED ++ L+QA VKVV+P
Sbjct: 368 SMMEHTLPPPPSGLPFNAQPRERLKNPNAPMLPP--PKNKEDFEKT---LSQAIVKVVIP 422
Query: 349 TDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSILQ 408
T+R LL LIHRM+EFVVREGPMFEAMIMN+EI+NP++RFLFENQ+PAH+YYRWK+YSILQ
Sbjct: 423 TERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSILQ 482
Query: 409 GDQPKEWRTNEFRMFDGGSVWRPPPMNLFTQGMPDELVEEEV--ESKTKGSLSNSQRHRL 466
GD P +WRT +FRMF GS WRPPP+N + GM +E E E KG+L QR +L
Sbjct: 483 GDSPTKWRTEDFRMFKNGSFWRPPPLNPYLHGMSEEQETEAFVEEPSKKGALKEEQRDKL 542
Query: 467 EDFLRNLTPERVKVAEAMVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDIL 526
E+ LR LTP + + +AMVFC+ +++AAEEI +CI ESLS T L KKI RLYLVSD+L
Sbjct: 543 EEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSDVL 602
Query: 527 HNCGIKISNASFYRRGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWAV 586
+N K++NAS+YR+ FE++L QIF++++ TY ++ L++E + RVM FRAWEDWA+
Sbjct: 603 YNSSAKVANASYYRKFFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDWAI 662
Query: 587 YPKDYLIKLQNVFLGLSDAVPLDANNGNEEDEDLDGAPLSD-VDG---EDLDGVPLDGAA 642
YP+ +LIKLQN+FLGL + + + + +DLDGAP+ + +DG ED+DG+P+D A
Sbjct: 663 YPEPFLIKLQNIFLGLVNII--EEKETEDVPDDLDGAPIEEELDGAPLEDVDGIPID-AT 719
Query: 643 LMKSLQRLPHSSSAPDEDDIDGVPCTYNITSATMDGEDLDGVPMDKVKPAR--------- 693
+ L +P S +DD+DGVP AT D + + P+ KV P++
Sbjct: 720 PIDDLDGVPIKSL---DDDLDGVPL-----DATEDSKKNE--PIFKVAPSKWEAVDESEL 769
Query: 694 -AATFIPSKWETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQG 752
A SKWE +++E+S ++ + E+SE ++D+ S + S L S I+
Sbjct: 770 EAQAVTTSKWELFDQHEESEEEENQ-NQEEESEDEEDTQS-----SKSEEHHLYSNPIKE 823
Query: 753 DSGEDDSAAREEKKEANKSE 772
+ E + E E +++
Sbjct: 824 EMTESKFSKYSEMSEEKRAK 843
Score = 79 (32.9 bits), Expect = 1.7e-176, Sum P(2) = 1.7e-176
Identities = 29/105 (27%), Positives = 49/105 (46%)
Query: 706 EENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEK 765
+E +S K D K+ T + SR S R++ S + + + R E+
Sbjct: 902 KEKLESRSKDKKEKDECTPTRKERKRRHSTSPSPSRSS--SGRRVKSPSPKSERSERSER 959
Query: 766 --KEANKSERSDRKKSPSPAAREEKKEANKS---ERSDRKKSPSP 805
KE+++S RS K SP +++ K+ + S +RS R +S SP
Sbjct: 960 SHKESSRS-RSSHKDSPRDVSKKAKRSPSGSRTPKRSRRSRSRSP 1003
Score = 71 (30.1 bits), Expect = 1.2e-175, Sum P(2) = 1.2e-175
Identities = 23/88 (26%), Positives = 38/88 (43%)
Query: 720 DVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKK- 778
D E+ ES+ + T +R+ + S S+ R K + KSERS+R +
Sbjct: 901 DKEKLESRSKDKKEKDECTPTRK-ERKRRHSTSPSPSRSSSGRRVKSPSPKSERSERSER 959
Query: 779 --SPSPAAREEKKEANKSERSDRKKSPS 804
S +R K++ + K+SPS
Sbjct: 960 SHKESSRSRSSHKDSPRDVSKKAKRSPS 987
Score = 67 (28.6 bits), Expect = 3.2e-175, Sum P(2) = 3.2e-175
Identities = 26/106 (24%), Positives = 49/106 (46%)
Query: 706 EENEDSAVTSSKWDDVEQSESKDDS-NSKGTGLTS-SRRGDLS--SERIQGDSGEDDSAA 761
++ +D + K S S S +S G + S S + + S SER +S S+
Sbjct: 912 KKEKDECTPTRKERKRRHSTSPSPSRSSSGRRVKSPSPKSERSERSERSHKESSRSRSSH 971
Query: 762 REEKKEANK-SERSDR-KKSPSPAAREEKKEANKSERSDRKKSPSP 805
++ ++ +K ++RS ++P + R + KS + R +S SP
Sbjct: 972 KDSPRDVSKKAKRSPSGSRTPKRSRRSRSRSPKKSGKKSRSQSRSP 1017
>MGI|MGI:1915208 [details] [associations]
symbol:U2surp "U2 snRNP-associated SURP domain containing"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
MGI:MGI:1915208 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
InterPro:IPR013170 Pfam:PF08312 CTD:23350 eggNOG:NOG307351
HOGENOM:HOG000286037 HOVERGEN:HBG093996 KO:K12842 OMA:SILQANS
OrthoDB:EOG47SSD9 EMBL:AC159895 EMBL:BC068265 EMBL:AK011588
EMBL:AK011796 IPI:IPI00411097 IPI:IPI00467507 IPI:IPI00830853
RefSeq:NP_001108449.1 RefSeq:NP_080752.2 UniGene:Mm.292742
UniGene:Mm.392755 HSSP:Q01085 ProteinModelPortal:Q6NV83 SMR:Q6NV83
STRING:Q6NV83 PhosphoSite:Q6NV83 PaxDb:Q6NV83 PRIDE:Q6NV83
Ensembl:ENSMUST00000078374 Ensembl:ENSMUST00000079659 GeneID:67958
KEGG:mmu:67958 UCSC:uc009rba.2 UCSC:uc009rbb.2 UCSC:uc009rbd.1
GeneTree:ENSGT00390000010687 InParanoid:Q6NV83 NextBio:326070
Bgee:Q6NV83 CleanEx:MM_2610101N10RIK Genevestigator:Q6NV83
Uniprot:Q6NV83
Length = 1029
Score = 1653 (586.9 bits), Expect = 1.7e-176, Sum P(2) = 1.7e-176
Identities = 362/800 (45%), Positives = 494/800 (61%)
Query: 6 MKKQIAEQKLKAFSIGSMG-AKRTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPAAK 64
+ + + E KLKAFSIG M AKRTLS + K
Sbjct: 72 LSRPLLENKLKAFSIGKMSTAKRTLSKKEQEELKKKEDEKAAAEIYEEFLAAFEGSDGNK 131
Query: 65 TNKVWVKAGTYDAGRRREDTSEK-GKLYKPQSRLQEDKDS-SASKAEEYARLLGDKKTES 122
K +V+ G +A + +T EK GK+YKP SR + K+ + S E LL E+
Sbjct: 132 V-KTFVRGGVVNAAKDEHETDEKRGKIYKPSSRFADQKNPPNQSSNERPPSLL---VIET 187
Query: 123 QRLXXXXXXXXXXXSNLEMFKEELKMIQEEREERHKYKGVLKGVYSEEAEP--------- 173
++ SNLE+FKEELK IQEER+ERHK KG L +++
Sbjct: 188 KKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLSRFEPPQSDSDGQRRSMDV 247
Query: 174 PS----AIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMW 229
PS + + + GS D GDP TTNLYLGN+NP++ E+ L + FGR+GPLAS+KIMW
Sbjct: 248 PSRRNRSSGVLDDYAPGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMW 307
Query: 230 PRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVXXXXXXXXXXX 289
PR+DEE+AR RNCGFVAFMNR+D ERALK LNGK + S+EMKLGWGK+V
Sbjct: 308 PRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPPHPIYIPP 367
Query: 290 KMLELTVPPPPSGLPFNAQPASKDKH-RIPKLRPGEPLTREDLDRLDQILNQAYVKVVVP 348
M+E T+PPPPSGLPFNAQP + K+ P L P P +ED ++ L+QA VKVV+P
Sbjct: 368 SMMEHTLPPPPSGLPFNAQPRERLKNPNAPMLPP--PKNKEDFEKT---LSQAIVKVVIP 422
Query: 349 TDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSILQ 408
T+R LL LIHRM+EFVVREGPMFEAMIMN+EI+NP++RFLFENQ+PAH+YYRWK+YSILQ
Sbjct: 423 TERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSILQ 482
Query: 409 GDQPKEWRTNEFRMFDGGSVWRPPPMNLFTQGMPDELVEEEV--ESKTKGSLSNSQRHRL 466
GD P +WRT +FRMF GS WRPPP+N + GM +E E E KG+L QR +L
Sbjct: 483 GDSPTKWRTEDFRMFKNGSFWRPPPLNPYLHGMSEEQETEAFVEEPSKKGALKEEQRDKL 542
Query: 467 EDFLRNLTPERVKVAEAMVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDIL 526
E+ LR LTP + + +AMVFC+ +++AAEEI +CI ESLS T L KKI RLYLVSD+L
Sbjct: 543 EEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSDVL 602
Query: 527 HNCGIKISNASFYRRGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWAV 586
+N K++NAS+YR+ FE++L QIF++++ TY ++ L++E + RVM FRAWEDWA+
Sbjct: 603 YNSSAKVANASYYRKFFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDWAI 662
Query: 587 YPKDYLIKLQNVFLGLSDAVPLDANNGNEEDEDLDGAPLSD-VDG---EDLDGVPLDGAA 642
YP+ +LIKLQN+FLGL + + + + +DLDGAP+ + +DG ED+DG+P+D A
Sbjct: 663 YPEPFLIKLQNIFLGLVNII--EEKETEDVPDDLDGAPIEEELDGAPLEDVDGIPID-AT 719
Query: 643 LMKSLQRLPHSSSAPDEDDIDGVPCTYNITSATMDGEDLDGVPMDKVKPAR--------- 693
+ L +P S +DD+DGVP AT D + + P+ KV P++
Sbjct: 720 PIDDLDGVPIKSL---DDDLDGVPL-----DATEDSKKNE--PIFKVAPSKWEAVDESEL 769
Query: 694 -AATFIPSKWETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQG 752
A SKWE +++E+S ++ + E+SE ++D+ S + S L S ++
Sbjct: 770 EAQAVTTSKWELFDQHEESEEEENQ-NQEEESEDEEDTQS-----SKSEEHHLYSNPVRE 823
Query: 753 DSGEDDSAAREEKKEANKSE 772
++ E + E E +++
Sbjct: 824 EATESKFSKYSEMSEEKRAK 843
Score = 83 (34.3 bits), Expect = 1.7e-176, Sum P(2) = 1.7e-176
Identities = 30/105 (28%), Positives = 50/105 (47%)
Query: 706 EENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEK 765
+E +S K D K+ T + SR S R++ S + + + R E+
Sbjct: 902 KEKLESRSKDKKEKDECTPTRKERKRRHSTSPSPSRSS--SGRRVKSPSPKSERSERSER 959
Query: 766 --KEANKSERSDRKKSPSPAAREEKKEANKS---ERSDRKKSPSP 805
KE+++S RS K SP A+++ K+ + S +RS R +S SP
Sbjct: 960 SHKESSRS-RSSHKDSPRDASKKAKRSPSGSRTPKRSRRSRSRSP 1003
Score = 72 (30.4 bits), Expect = 2.5e-175, Sum P(2) = 2.5e-175
Identities = 23/88 (26%), Positives = 38/88 (43%)
Query: 720 DVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKK- 778
D E+ ES+ + T +R+ + S S+ R K + KSERS+R +
Sbjct: 901 DKEKLESRSKDKKEKDECTPTRK-ERKRRHSTSPSPSRSSSGRRVKSPSPKSERSERSER 959
Query: 779 --SPSPAAREEKKEANKSERSDRKKSPS 804
S +R K++ + K+SPS
Sbjct: 960 SHKESSRSRSSHKDSPRDASKKAKRSPS 987
Score = 71 (30.1 bits), Expect = 3.2e-175, Sum P(2) = 3.2e-175
Identities = 27/106 (25%), Positives = 50/106 (47%)
Query: 706 EENEDSAVTSSKWDDVEQSESKDDS-NSKGTGLTS-SRRGDLS--SERIQGDSGEDDSAA 761
++ +D + K S S S +S G + S S + + S SER +S S+
Sbjct: 912 KKEKDECTPTRKERKRRHSTSPSPSRSSSGRRVKSPSPKSERSERSERSHKESSRSRSSH 971
Query: 762 REEKKEANK-SERSDR-KKSPSPAAREEKKEANKSERSDRKKSPSP 805
++ ++A+K ++RS ++P + R + KS + R +S SP
Sbjct: 972 KDSPRDASKKAKRSPSGSRTPKRSRRSRSRSPKKSGKKSRSQSRSP 1017
>UNIPROTKB|O15042 [details] [associations]
symbol:U2SURP "U2 snRNP-associated SURP motif-containing
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170
Pfam:PF08312 HSSP:Q9NQ94 EMBL:AC018450 EMBL:AC026304 EMBL:BC006474
EMBL:BC016323 EMBL:BC105604 EMBL:BC111692 EMBL:AB002330
EMBL:BK000564 IPI:IPI00143753 IPI:IPI00790699 IPI:IPI00829908
RefSeq:NP_001073884.1 UniGene:Hs.596572 ProteinModelPortal:O15042
SMR:O15042 IntAct:O15042 STRING:O15042 PhosphoSite:O15042
PaxDb:O15042 PRIDE:O15042 Ensembl:ENST00000319822
Ensembl:ENST00000397933 Ensembl:ENST00000473835 GeneID:23350
KEGG:hsa:23350 UCSC:uc003evh.1 UCSC:uc003evi.1 UCSC:uc003evk.1
CTD:23350 GeneCards:GC03P142720 H-InvDB:HIX0003746 HGNC:HGNC:30855
HPA:HPA037545 neXtProt:NX_O15042 eggNOG:NOG307351
HOGENOM:HOG000286037 HOVERGEN:HBG093996 InParanoid:O15042 KO:K12842
OMA:SILQANS OrthoDB:EOG47SSD9 ChiTaRS:u2surp GenomeRNAi:23350
NextBio:45335 PMAP-CutDB:O15042 ArrayExpress:O15042 Bgee:O15042
Genevestigator:O15042 Uniprot:O15042
Length = 1029
Score = 1654 (587.3 bits), Expect = 3.6e-176, Sum P(2) = 3.6e-176
Identities = 363/800 (45%), Positives = 493/800 (61%)
Query: 6 MKKQIAEQKLKAFSIGSMG-AKRTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPAAK 64
+ + + E KLKAFSIG M AKRTLS + K
Sbjct: 72 LSRPLLENKLKAFSIGKMSTAKRTLSKKEQEELKKKEDEKAAAEIYEEFLAAFEGSDGNK 131
Query: 65 TNKVWVKAGTYDAGRRREDTSEK-GKLYKPQSRLQEDKDS-SASKAEEYARLLGDKKTES 122
K +V+ G +A + +T EK GK+YKP SR + K+ + S E LL E+
Sbjct: 132 V-KTFVRGGVVNAAKEEHETDEKRGKIYKPSSRFADQKNPPNQSSNERPPSLL---VIET 187
Query: 123 QRLXXXXXXXXXXXSNLEMFKEELKMIQEEREERHKYKGVLKGVYSEEAEP--------- 173
++ SNLE+FKEELK IQEER+ERHK KG L +++
Sbjct: 188 KKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLSRFEPPQSDSDGQRRSMDA 247
Query: 174 PS----AIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMW 229
PS + + + GS D GDP TTNLYLGN+NP++ E+ L + FGR+GPLAS+KIMW
Sbjct: 248 PSRRNRSSGVLDDYAPGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMW 307
Query: 230 PRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVXXXXXXXXXXX 289
PR+DEE+AR RNCGFVAFMNR+D ERALK LNGK + S+EMKLGWGK+V
Sbjct: 308 PRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPPHPIYIPP 367
Query: 290 KMLELTVPPPPSGLPFNAQPASKDKH-RIPKLRPGEPLTREDLDRLDQILNQAYVKVVVP 348
M+E T+PPPPSGLPFNAQP + K+ P L P P +ED ++ L+QA VKVV+P
Sbjct: 368 SMMEHTLPPPPSGLPFNAQPRERLKNPNAPMLPP--PKNKEDFEKT---LSQAIVKVVIP 422
Query: 349 TDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSILQ 408
T+R LL LIHRM+EFVVREGPMFEAMIMN+EI+NP++RFLFENQ+PAH+YYRWK+YSILQ
Sbjct: 423 TERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSILQ 482
Query: 409 GDQPKEWRTNEFRMFDGGSVWRPPPMNLFTQGMPDELVEEEV--ESKTKGSLSNSQRHRL 466
GD P +WRT +FRMF GS WRPPP+N + GM +E E E KG+L QR +L
Sbjct: 483 GDSPTKWRTEDFRMFKNGSFWRPPPLNPYLHGMSEEQETEAFVEEPSKKGALKEEQRDKL 542
Query: 467 EDFLRNLTPERVKVAEAMVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDIL 526
E+ LR LTP + + +AMVFC+ +++AAEEI +CI ESLS T L KKI RLYLVSD+L
Sbjct: 543 EEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSDVL 602
Query: 527 HNCGIKISNASFYRRGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWAV 586
+N K++NAS+YR+ FE++L QIF++++ TY ++ L++E + RVM FRAWEDWA+
Sbjct: 603 YNSSAKVANASYYRKFFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDWAI 662
Query: 587 YPKDYLIKLQNVFLGLSDAVPLDANNGNEEDEDLDGAPLSD-VDG---EDLDGVPLDGAA 642
YP+ +LIKLQN+FLGL + + + + +DLDGAP+ + +DG ED+DG+P+D A
Sbjct: 663 YPEPFLIKLQNIFLGLVNII--EEKETEDVPDDLDGAPIEEELDGAPLEDVDGIPID-AT 719
Query: 643 LMKSLQRLPHSSSAPDEDDIDGVPCTYNITSATMDGEDLDGVPMDKVKPAR--------- 693
+ L +P S +DD+DGVP AT D + + P+ KV P++
Sbjct: 720 PIDDLDGVPIKSL---DDDLDGVPL-----DATEDSKKNE--PIFKVAPSKWEAVDESEL 769
Query: 694 -AATFIPSKWETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQG 752
A SKWE +++E+S ++ + E+SE ++D+ S + S L S I+
Sbjct: 770 EAQAVTTSKWELFDQHEESEEEENQ-NQEEESEDEEDTQS-----SKSEEHHLYSNPIKE 823
Query: 753 DSGEDDSAAREEKKEANKSE 772
+ E + E E +++
Sbjct: 824 EMTESKFSKYSEMSEEKRAK 843
Score = 79 (32.9 bits), Expect = 3.6e-176, Sum P(2) = 3.6e-176
Identities = 29/105 (27%), Positives = 49/105 (46%)
Query: 706 EENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEK 765
+E +S K D K+ T + SR S R++ S + + + R E+
Sbjct: 902 KEKLESRSKDKKEKDECTPTRKERKRRHSTSPSPSRSS--SGRRVKSPSPKSERSERSER 959
Query: 766 --KEANKSERSDRKKSPSPAAREEKKEANKS---ERSDRKKSPSP 805
KE+++S RS K SP +++ K+ + S +RS R +S SP
Sbjct: 960 SHKESSRS-RSSHKDSPRDVSKKAKRSPSGSRTPKRSRRSRSRSP 1003
Score = 71 (30.1 bits), Expect = 2.5e-175, Sum P(2) = 2.5e-175
Identities = 23/88 (26%), Positives = 38/88 (43%)
Query: 720 DVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKK- 778
D E+ ES+ + T +R+ + S S+ R K + KSERS+R +
Sbjct: 901 DKEKLESRSKDKKEKDECTPTRK-ERKRRHSTSPSPSRSSSGRRVKSPSPKSERSERSER 959
Query: 779 --SPSPAAREEKKEANKSERSDRKKSPS 804
S +R K++ + K+SPS
Sbjct: 960 SHKESSRSRSSHKDSPRDVSKKAKRSPS 987
Score = 67 (28.6 bits), Expect = 6.6e-175, Sum P(2) = 6.6e-175
Identities = 26/106 (24%), Positives = 49/106 (46%)
Query: 706 EENEDSAVTSSKWDDVEQSESKDDS-NSKGTGLTS-SRRGDLS--SERIQGDSGEDDSAA 761
++ +D + K S S S +S G + S S + + S SER +S S+
Sbjct: 912 KKEKDECTPTRKERKRRHSTSPSPSRSSSGRRVKSPSPKSERSERSERSHKESSRSRSSH 971
Query: 762 REEKKEANK-SERSDR-KKSPSPAAREEKKEANKSERSDRKKSPSP 805
++ ++ +K ++RS ++P + R + KS + R +S SP
Sbjct: 972 KDSPRDVSKKAKRSPSGSRTPKRSRRSRSRSPKKSGKKSRSQSRSP 1017
>ZFIN|ZDB-GENE-070912-400 [details] [associations]
symbol:u2surp "U2 snRNP-associated SURP domain
containing" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR000061 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102
PROSITE:PS50128 SMART:SM00360 SMART:SM00648
ZFIN:ZDB-GENE-070912-400 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
InterPro:IPR013170 Pfam:PF08312 EMBL:BX248497 eggNOG:NOG307351
HOGENOM:HOG000286037 HOVERGEN:HBG093996 OMA:SILQANS
OrthoDB:EOG47SSD9 GeneTree:ENSGT00390000010687 IPI:IPI00613709
UniGene:Dr.75427 Ensembl:ENSDART00000132651 Uniprot:B0S5J3
Length = 923
Score = 1659 (589.1 bits), Expect = 7.4e-176, Sum P(2) = 7.4e-176
Identities = 376/802 (46%), Positives = 488/802 (60%)
Query: 8 KQIAEQKLKAFSIGSMG-AKRTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPAAKTN 66
K + E KLKAFSIG M AKRTLS K
Sbjct: 15 KALLESKLKAFSIGKMAVAKRTLSKKEQDEIKKKEDERAAAEIYEEFLAAFEGGEG-KV- 72
Query: 67 KVWVKAGTYDAGRRREDTSEK-GKLYKPQSRLQEDKDSSASKAEEYARLLG-DKKTESQR 124
K +V+ G +A + EK GKLYKP+SR+ E K S E + L DK+ S++
Sbjct: 73 KTFVRGGIANATKEEAAADEKKGKLYKPKSRIVEAK--SFLPLETPQQFLPIDKRNASKK 130
Query: 125 LXXXXXXXXXXXSNLEMFKEELKMIQEEREERHKYKG---------VLKGVYSEEAEP-- 173
SNLE+FKEELK IQEER+ERH+ KG +G S +
Sbjct: 131 -----GDKEKKKSNLELFKEELKQIQEERDERHRLKGRVSRFEPLPTTEGRRSSDGSSRR 185
Query: 174 --PSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPR 231
PS++ + GS D GDP TTNLYLGN+NP++ E+ L + FGRYGPLAS+KIMWPR
Sbjct: 186 NRPSSVL--DDSAPGSHDVGDPTTTNLYLGNINPQMNEEMLCQEFGRYGPLASVKIMWPR 243
Query: 232 SDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVXXXXXXXXXXXKM 291
+DEE+AR RNCGFVAFM R+D ERALK+LNGK + ++EMKLGWGK V M
Sbjct: 244 TDEERARERNCGFVAFMTRRDAERALKHLNGKMIMNFEMKLGWGKGVPIPPHPIYIPPSM 303
Query: 292 LELTVPPPPSGLPFNAQPASKDKHRIPKLR-PGEPLTREDLDRLDQILNQAYVKVVVPTD 350
+E T+PPPPSGLPFNAQP K++ + P P P +E+ ++ L+QA VKVV+PT+
Sbjct: 304 MEHTLPPPPSGLPFNAQP--KERLKNPNAAMPPPPKCKEEFEKT---LSQAIVKVVIPTE 358
Query: 351 RTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSILQGD 410
R LL LIHRM+EFVVREGPMFEAMIMN+EI+NPLYRFLFENQSPAH+YYRWK+Y+ILQG+
Sbjct: 359 RNLLSLIHRMIEFVVREGPMFEAMIMNREINNPLYRFLFENQSPAHVYYRWKLYTILQGE 418
Query: 411 QPKEWRTNEFRMFDGGSVWRPPPMNLFTQGMP-DELVEEEVESKT--KGSLSNSQRHRLE 467
P +W+T +FRMF GS+WRPPP+N + G P DE E++ + + KGSL + +R +LE
Sbjct: 419 SPTKWKTEDFRMFKNGSLWRPPPLNPYLHGTPEDEEHEDDDDEEICKKGSLKDEERDKLE 478
Query: 468 DFLRNLTPERVKVAEAMVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILH 527
+ LR LTP + +A M FC+ H+DAAEEI ECI ESLS T L KKI RLYLVSD+L+
Sbjct: 479 ELLRGLTPRKSDIAGGMFFCLTHADAAEEIVECIAESLSILKTPLPKKIARLYLVSDVLY 538
Query: 528 NCGIKISNASFYRRGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWAVY 587
N K++NAS+YR+ FE++L QIF++++ TY ++ L++E + RVM FRAWE+WAVY
Sbjct: 539 NSSAKVTNASYYRKFFETKLCQIFSDLNATYKTIQGHLQSENFKQRVMSCFRAWEEWAVY 598
Query: 588 PKDYLIKLQNVFLGLSDAVPLDANNGNEE--------DEDLDGAPLSDVDGEDLDGVPLD 639
P +LIKLQN+FLGL V LD EE ED+DGAP+ + E+LDG PLD
Sbjct: 599 PDPFLIKLQNIFLGL---VSLDPEKEPEELVPELPEKVEDIDGAPIVE---EELDGAPLD 652
Query: 640 GAALMKSLQRLPHSSSAPDEDDIDGVPCTYNITSATMDGEDLDGVPMDKVKPARAATFIP 699
M + P ++ D D+DG+P I A +DLDGVP+D+ KP P
Sbjct: 653 DVDGMP-IDGAPIDGASMD--DLDGMP----IKGAD---DDLDGVPLDQ-KPGFKVA--P 699
Query: 700 SKWETVEEN--EDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGED 757
SKWE V+ E AVT+SKW+ + E + S S + SS S +
Sbjct: 700 SKWEAVDGAALEAQAVTTSKWEIFDLPEESEKSKSSTKSEAEGKNSHKSSSAADQQSYSN 759
Query: 758 DSAAREEKKEANKSERSDRKKS 779
+ K A SE S+ K++
Sbjct: 760 PVREEYDLKSAKFSETSEEKRA 781
Score = 71 (30.1 bits), Expect = 7.4e-176, Sum P(2) = 7.4e-176
Identities = 24/92 (26%), Positives = 41/92 (44%)
Query: 721 VEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSA-AREEKKEAN-------KSE 772
+++ + K+ K R+ S+ + +D+S R+EKK + +S
Sbjct: 822 LQREKEKETEKDKEKEKEKERKDKEKSDVFHKEKDKDESTPGRKEKKRRHSPSPSPTRSS 881
Query: 773 RSDRKKSPSPAA-REEKKEANKSERSDRKKSP 803
S R +SPSP + R ++ S RS K SP
Sbjct: 882 SSRRGRSPSPRSERSDRSYTRDSSRSAYKDSP 913
Score = 55 (24.4 bits), Expect = 3.6e-174, Sum P(2) = 3.6e-174
Identities = 23/96 (23%), Positives = 37/96 (38%)
Query: 706 EENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEK 765
+E E K D + + KD+S G +R S S S++R +
Sbjct: 836 KEKEKERKDKEKSDVFHKEKDKDESTP---GRKEKKRRHSPSP-----SPTRSSSSRRGR 887
Query: 766 KEANKSERSDRKKSPSPAAREEKKEANKSERSDRKK 801
+ +SERSDR + + K +S R K+
Sbjct: 888 SPSPRSERSDRSYTRDSSRSAYKDSPRESNRKSSKR 923
>UNIPROTKB|E2R1V3 [details] [associations]
symbol:U2SURP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000061 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102
PROSITE:PS50128 SMART:SM00360 SMART:SM00648 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 OMA:SILQANS
GeneTree:ENSGT00390000010687 EMBL:AAEX03013650
Ensembl:ENSCAFT00000012763 Uniprot:E2R1V3
Length = 1028
Score = 1650 (585.9 bits), Expect = 9.4e-176, Sum P(2) = 9.4e-176
Identities = 362/799 (45%), Positives = 492/799 (61%)
Query: 6 MKKQIAEQKLKAFSIGSMG-AKRTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPAAK 64
+ + + E KLKAFSIG M AKRTLS + K
Sbjct: 72 LSRPLLENKLKAFSIGKMSTAKRTLSKKEQEELKKKEDEKAAAEIYEEFLAAFEGSDGNK 131
Query: 65 TNKVWVKAGTYDAGRRREDTSEK-GKLYKPQSRLQEDKDS-SASKAEEYARLLGDKKTES 122
K +V+ G +A + +T EK GK+YKP SR + K+ + S E LL E+
Sbjct: 132 V-KTFVRGGVVNAAKEEHETDEKRGKIYKPSSRFADQKNPPNQSSNERPPSLL---VIET 187
Query: 123 QRLXXXXXXXXXXXSNLEMFKEELKMIQEEREERHKYKGVLKGVYSEEAEP--------- 173
++ SNLE+FKEELK IQEER+ERHK KG L +++
Sbjct: 188 KKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLSRFEPPQSDSDGQRRSMDA 247
Query: 174 PSA---IAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWP 230
PS ++ + GS D GDP TTNLYLGN+NP++ E+ L + FGR+GPLAS+KIMWP
Sbjct: 248 PSRRNRSSVLDDYAPGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWP 307
Query: 231 RSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVXXXXXXXXXXXK 290
R+DEE+AR RNCGFVAFMNR+D ERALK LNGK + S+EMKLGWGK+V
Sbjct: 308 RTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPPHPIYIPPS 367
Query: 291 MLELTVPPPPSGLPFNAQPASKDKH-RIPKLRPGEPLTREDLDRLDQILNQAYVKVVVPT 349
M+E T+PPPPSGLPFNAQP + K+ P L P P +ED ++ L+QA VKVV+PT
Sbjct: 368 MMEHTLPPPPSGLPFNAQPRERLKNPNAPMLPP--PKNKEDFEKT---LSQAIVKVVIPT 422
Query: 350 DRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSILQG 409
+R LL LIHRM+EFVVREGPMFEAMIMN+EI+NP++RFLFENQ+PAH+YYRWK+YSILQG
Sbjct: 423 ERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSILQG 482
Query: 410 DQPKEWRTNEFRMFDGGSVWRPPPMNLFTQGMPDELVEEEV--ESKTKGSLSNSQRHRLE 467
D P +WRT +FRMF GS WRPPP+N + GM +E E E KG+L QR +LE
Sbjct: 483 DSPTKWRTEDFRMFKNGSFWRPPPLNPYLHGMSEEQETEAFVEEPSKKGALKEEQRDKLE 542
Query: 468 DFLRNLTPERVKVAEAMVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILH 527
+ LR LTP + + +AMVFC+ +++AAEEI +CI ESLS T L KKI RLYLVSD+L+
Sbjct: 543 EILRGLTPRKNDIGDAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSDVLY 602
Query: 528 NCGIKISNASFYRRGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWAVY 587
N K++NAS+YR+ FE++L QIF++++ TY ++ L++E + RVM FRAWEDWA+Y
Sbjct: 603 NSSAKVANASYYRKFFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDWAIY 662
Query: 588 PKDYLIKLQNVFLGLSDAVPLDANNGNEEDEDLDGAPLSD-VDG---EDLDGVPLDGAAL 643
P+ +LIKLQN+FLGL + + + + +DLDGAP+ + +DG ED+DG+P+D A
Sbjct: 663 PEPFLIKLQNIFLGLVNII--EEKETEDVPDDLDGAPIEEELDGAPLEDVDGIPID-ATP 719
Query: 644 MKSLQRLPHSSSAPDEDDIDGVPCTYNITSATMDGEDLDGVPMDKVKPAR---------- 693
+ L +P S +DD+DGVP A D + + P+ KV P++
Sbjct: 720 IDDLDGVPIKSL---DDDLDGVPL-----DAAEDSKKNE--PIFKVAPSKWEAVDESELE 769
Query: 694 AATFIPSKWETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGD 753
A SKWE +++E+S ++ + E+SE ++D+ S + S L S I+ +
Sbjct: 770 AQAVTTSKWELFDQHEESEEEENQ-NQEEESEDEEDTQS-----SKSEEHHLYSNPIKEE 823
Query: 754 SGEDDSAAREEKKEANKSE 772
E + E E +++
Sbjct: 824 MTESKFSKYSEMSEEKRAK 842
Score = 79 (32.9 bits), Expect = 9.4e-176, Sum P(2) = 9.4e-176
Identities = 29/105 (27%), Positives = 49/105 (46%)
Query: 706 EENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEK 765
+E +S K D K+ T + SR S R++ S + + + R E+
Sbjct: 901 KEKLESRSKDKKEKDECTPTRKERKRRHSTSPSPSRSS--SGRRVKSPSPKSERSERSER 958
Query: 766 --KEANKSERSDRKKSPSPAAREEKKEANKS---ERSDRKKSPSP 805
KE+++S RS K SP +++ K+ + S +RS R +S SP
Sbjct: 959 SHKESSRS-RSSHKDSPRDVSKKAKRSPSGSRTPKRSRRSRSRSP 1002
Score = 71 (30.1 bits), Expect = 6.6e-175, Sum P(2) = 6.6e-175
Identities = 23/88 (26%), Positives = 38/88 (43%)
Query: 720 DVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKK- 778
D E+ ES+ + T +R+ + S S+ R K + KSERS+R +
Sbjct: 900 DKEKLESRSKDKKEKDECTPTRK-ERKRRHSTSPSPSRSSSGRRVKSPSPKSERSERSER 958
Query: 779 --SPSPAAREEKKEANKSERSDRKKSPS 804
S +R K++ + K+SPS
Sbjct: 959 SHKESSRSRSSHKDSPRDVSKKAKRSPS 986
Score = 67 (28.6 bits), Expect = 1.7e-174, Sum P(2) = 1.7e-174
Identities = 26/106 (24%), Positives = 49/106 (46%)
Query: 706 EENEDSAVTSSKWDDVEQSESKDDS-NSKGTGLTS-SRRGDLS--SERIQGDSGEDDSAA 761
++ +D + K S S S +S G + S S + + S SER +S S+
Sbjct: 911 KKEKDECTPTRKERKRRHSTSPSPSRSSSGRRVKSPSPKSERSERSERSHKESSRSRSSH 970
Query: 762 REEKKEANK-SERSDR-KKSPSPAAREEKKEANKSERSDRKKSPSP 805
++ ++ +K ++RS ++P + R + KS + R +S SP
Sbjct: 971 KDSPRDVSKKAKRSPSGSRTPKRSRRSRSRSPKKSGKKSRSQSRSP 1016
>RGD|1307882 [details] [associations]
symbol:U2surp "U2 snRNP-associated SURP domain containing"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
RGD:1307882 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170
Pfam:PF08312 CTD:23350 KO:K12842 GeneTree:ENSGT00390000010687
IPI:IPI00370764 RefSeq:XP_002727165.1 RefSeq:XP_002730000.1
ProteinModelPortal:D4A4B4 Ensembl:ENSRNOT00000011609 GeneID:315903
KEGG:rno:315903 UCSC:RGD:1307882 NextBio:670025 ArrayExpress:D4A4B4
Uniprot:D4A4B4
Length = 985
Score = 1643 (583.4 bits), Expect = 2.0e-175, Sum P(2) = 2.0e-175
Identities = 361/796 (45%), Positives = 490/796 (61%)
Query: 10 IAEQKLKAFSIGSMG-AKRTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPAAKTNKV 68
+ E KLKAFSIG M AKRTLS + K K
Sbjct: 32 LLENKLKAFSIGKMSTAKRTLSKKEQEELKKKEDEKAAAEIYEEFLAAFEGSDGNKV-KT 90
Query: 69 WVKAGTYDAGRRREDTSEK-GKLYKPQSRLQEDKDS-SASKAEEYARLLGDKKTESQRLX 126
+V+ G +A + +T EK GK+YKP SR + K+ + S E LL E+++
Sbjct: 91 FVRGGVVNAAKDEHETDEKRGKIYKPSSRFADQKNPPNQSSNERPPSLL---VIETKKPP 147
Query: 127 XXXXXXXXXXSNLEMFKEELKMIQEEREERHKYKGVLKGVYSEEAEP---------PS-- 175
SNLE+FKEELK IQEER+ERHK KG L +++ PS
Sbjct: 148 LKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLSRFEPPQSDSDGQRRSMDVPSRR 207
Query: 176 --AIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSD 233
+ + + GS D GDP TTNLYLGN+NP++ E+ L + FGR+GPLAS+KIMWPR+D
Sbjct: 208 NRSSGVLDDYAPGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTD 267
Query: 234 EEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVXXXXXXXXXXXKMLE 293
EE+AR RNCGFVAFMNR+D ERALK LNGK + S+EMKLGWGK+V M+E
Sbjct: 268 EERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPPHPIYIPPSMME 327
Query: 294 LTVPPPPSGLPFNAQPASKDKH-RIPKLRPGEPLTREDLDRLDQILNQAYVKVVVPTDRT 352
T+PPPPSGLPFNAQP + K+ P L P P +ED ++ L+QA VKVV+PT+R
Sbjct: 328 HTLPPPPSGLPFNAQPRERLKNPNAPMLPP--PKNKEDFEKT---LSQAIVKVVIPTERN 382
Query: 353 LLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSILQGDQP 412
LL LIHRM+EFVVREGPMFEAMIMN+EI+NP++RFLFENQ+PAH+YYRWK+YSILQGD P
Sbjct: 383 LLALIHRMIEFVVREGPMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSILQGDSP 442
Query: 413 KEWRTNEFRMFDGGSVWRPPPMNLFTQGMPDELVEEEV--ESKTKGSLSNSQRHRLEDFL 470
+WRT +FRMF GS WRPPP+N + GM +E E E KG+L QR +LE+ L
Sbjct: 443 TKWRTEDFRMFKNGSFWRPPPLNPYLHGMSEEQETEAFVEEPSKKGALKEEQRDKLEEIL 502
Query: 471 RNLTPERVKVAEAMVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCG 530
R LTP + + +AMVFC+ +++AAEEI +CI ESLS T L KKI RLYLVSD+L+N
Sbjct: 503 RGLTPRKNDIGDAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSDVLYNSS 562
Query: 531 IKISNASFYRRGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWAVYPKD 590
K++NAS+YR+ FE++L QIF++++ TY ++ L++E + RVM FRAWEDWA+YP+
Sbjct: 563 AKVANASYYRKFFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDWAIYPEP 622
Query: 591 YLIKLQNVFLGLSDAVPLDANNGNEEDEDLDGAPLSD-VDG---EDLDGVPLDGAALMKS 646
+LIKLQN+FLGL + + + + +DLDGAP+ + +DG ED+DG+P+D A +
Sbjct: 623 FLIKLQNIFLGLVNII--EEKETEDVPDDLDGAPIEEELDGAPLEDVDGIPID-ATPIDD 679
Query: 647 LQRLPHSSSAPDEDDIDGVPCTYNITSATMDGEDLDGVPMDKVKPAR----------AAT 696
L +P S +DD+DGVP A D + + P+ KV P++ A
Sbjct: 680 LDGVPIKSL---DDDLDGVPL-----DAAEDSKKNE--PIFKVAPSKWEAVDESELEAQA 729
Query: 697 FIPSKWETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGE 756
SKWE +++E+S ++ + E+SE ++D+ S + S L S ++ + E
Sbjct: 730 VTTSKWELFDQHEESEEEENQ-NQEEESEDEEDTQS-----SKSEEHHLYSNPVREEMTE 783
Query: 757 DDSAAREEKKEANKSE 772
+ E E +++
Sbjct: 784 SKFSKYSEMSEEKRAK 799
Score = 83 (34.3 bits), Expect = 2.0e-175, Sum P(2) = 2.0e-175
Identities = 30/105 (28%), Positives = 50/105 (47%)
Query: 706 EENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEK 765
+E +S K D K+ T + SR S R++ S + + + R E+
Sbjct: 858 KEKLESRSKDKKEKDECTPTRKERKRRHSTSPSPSRSS--SGRRVKSPSPKSERSERSER 915
Query: 766 --KEANKSERSDRKKSPSPAAREEKKEANKS---ERSDRKKSPSP 805
KE+++S RS K SP A+++ K+ + S +RS R +S SP
Sbjct: 916 SHKESSRS-RSSHKDSPRDASKKAKRSPSGSRTPKRSRRSRSRSP 959
Score = 72 (30.4 bits), Expect = 2.8e-174, Sum P(2) = 2.8e-174
Identities = 23/88 (26%), Positives = 38/88 (43%)
Query: 720 DVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKK- 778
D E+ ES+ + T +R+ + S S+ R K + KSERS+R +
Sbjct: 857 DKEKLESRSKDKKEKDECTPTRK-ERKRRHSTSPSPSRSSSGRRVKSPSPKSERSERSER 915
Query: 779 --SPSPAAREEKKEANKSERSDRKKSPS 804
S +R K++ + K+SPS
Sbjct: 916 SHKESSRSRSSHKDSPRDASKKAKRSPS 943
Score = 71 (30.1 bits), Expect = 3.6e-174, Sum P(2) = 3.6e-174
Identities = 27/106 (25%), Positives = 50/106 (47%)
Query: 706 EENEDSAVTSSKWDDVEQSESKDDS-NSKGTGLTS-SRRGDLS--SERIQGDSGEDDSAA 761
++ +D + K S S S +S G + S S + + S SER +S S+
Sbjct: 868 KKEKDECTPTRKERKRRHSTSPSPSRSSSGRRVKSPSPKSERSERSERSHKESSRSRSSH 927
Query: 762 REEKKEANK-SERSDR-KKSPSPAAREEKKEANKSERSDRKKSPSP 805
++ ++A+K ++RS ++P + R + KS + R +S SP
Sbjct: 928 KDSPRDASKKAKRSPSGSRTPKRSRRSRSRSPKKSGKKSRSQSRSP 973
>UNIPROTKB|E7ET15 [details] [associations]
symbol:U2SURP "U2 snRNP-associated SURP motif-containing
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000061 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
SMART:SM00360 SMART:SM00648 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 EMBL:AC018450
EMBL:AC026304 HGNC:HGNC:30855 ChiTaRS:u2surp IPI:IPI00966302
ProteinModelPortal:E7ET15 SMR:E7ET15 Ensembl:ENST00000493598
ArrayExpress:E7ET15 Bgee:E7ET15 Uniprot:E7ET15
Length = 1028
Score = 1644 (583.8 bits), Expect = 4.1e-175, Sum P(2) = 4.1e-175
Identities = 361/799 (45%), Positives = 492/799 (61%)
Query: 6 MKKQIAEQKLKAFSIGSMG-AKRTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPAAK 64
+ + + E KLKAFSIG M AKRTLS + K
Sbjct: 72 LSRPLLENKLKAFSIGKMSTAKRTLSKKEQEELKKKEDEKAAAEIYEEFLAAFEGSDGNK 131
Query: 65 TNKVWVKAGTYDAGRRREDTSEK-GKLYKPQSRLQEDKDS-SASKAEEYARLLGDKKTES 122
K +V+ G +A + +T EK GK+YKP SR + K+ + S E LL E+
Sbjct: 132 V-KTFVRGGVVNAAKEEHETDEKRGKIYKPSSRFADQKNPPNQSSNERPPSLL---VIET 187
Query: 123 QRLXXXXXXXXXXXSNLEMFKEELKMIQEEREERHKYKGVLKGVYSEEAEP--------- 173
++ SNLE+FKEELK IQEER+ERHK KG L +++
Sbjct: 188 KKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLSRFEPPQSDSDGQRRSMDA 247
Query: 174 PSA---IAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWP 230
PS ++ + GS D GDP TTNLYLGN+NP++ E+ L + FGR+GPLAS+KIMWP
Sbjct: 248 PSRRNRSSVLDDYAPGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWP 307
Query: 231 RSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVXXXXXXXXXXXK 290
R+DEE+AR RNCGFVAFMNR+D ERALK LNGK + S+EMKLGWGK+V
Sbjct: 308 RTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPPHPIYIPPS 367
Query: 291 MLELTVPPPPSGLPFNAQPASKDKH-RIPKLRPGEPLTREDLDRLDQILNQAYVKVVVPT 349
M+E T+PPPPSGLPFNAQP + K+ P L P P +ED ++ L+QA VKVV+PT
Sbjct: 368 MMEHTLPPPPSGLPFNAQPRERLKNPNAPMLPP--PKNKEDFEKT---LSQAIVKVVIPT 422
Query: 350 DRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSILQG 409
+R LL LIHRM+EFVVREGPMFEAMIMN+EI+NP++RFLFENQ+PAH+YYRWK+YSILQ
Sbjct: 423 ERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSILQA 482
Query: 410 DQPKEWRTNEFRMFDGGSVWRPPPMNLFTQGMPDELVEEEV--ESKTKGSLSNSQRHRLE 467
+ P +WRT +FRMF GS WRPPP+N + GM +E E E KG+L QR +LE
Sbjct: 483 NSPTKWRTEDFRMFKNGSFWRPPPLNPYLHGMSEEQETEAFVEEPSKKGALKEEQRDKLE 542
Query: 468 DFLRNLTPERVKVAEAMVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILH 527
+ LR LTP + + +AMVFC+ +++AAEEI +CI ESLS T L KKI RLYLVSD+L+
Sbjct: 543 EILRGLTPRKNDIGDAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSDVLY 602
Query: 528 NCGIKISNASFYRRGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWAVY 587
N K++NAS+YR+ FE++L QIF++++ TY ++ L++E + RVM FRAWEDWA+Y
Sbjct: 603 NSSAKVANASYYRKFFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDWAIY 662
Query: 588 PKDYLIKLQNVFLGLSDAVPLDANNGNEEDEDLDGAPLSD-VDG---EDLDGVPLDGAAL 643
P+ +LIKLQN+FLGL + + + + +DLDGAP+ + +DG ED+DG+P+D A
Sbjct: 663 PEPFLIKLQNIFLGLVNII--EEKETEDVPDDLDGAPIEEELDGAPLEDVDGIPID-ATP 719
Query: 644 MKSLQRLPHSSSAPDEDDIDGVPCTYNITSATMDGEDLDGVPMDKVKPAR---------- 693
+ L +P S +DD+DGVP AT D + + P+ KV P++
Sbjct: 720 IDDLDGVPIKSL---DDDLDGVPL-----DATEDSKKNE--PIFKVAPSKWEAVDESELE 769
Query: 694 AATFIPSKWETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGD 753
A SKWE +++E+S ++ + E+SE ++D+ S + S L S I+ +
Sbjct: 770 AQAVTTSKWELFDQHEESEEEENQ-NQEEESEDEEDTQS-----SKSEEHHLYSNPIKEE 823
Query: 754 SGEDDSAAREEKKEANKSE 772
E + E E +++
Sbjct: 824 MTESKFSKYSEMSEEKRAK 842
Score = 79 (32.9 bits), Expect = 4.1e-175, Sum P(2) = 4.1e-175
Identities = 29/105 (27%), Positives = 49/105 (46%)
Query: 706 EENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEK 765
+E +S K D K+ T + SR S R++ S + + + R E+
Sbjct: 901 KEKLESRSKDKKEKDECTPTRKERKRRHSTSPSPSRSS--SGRRVKSPSPKSERSERSER 958
Query: 766 --KEANKSERSDRKKSPSPAAREEKKEANKS---ERSDRKKSPSP 805
KE+++S RS K SP +++ K+ + S +RS R +S SP
Sbjct: 959 SHKESSRS-RSSHKDSPRDVSKKAKRSPSGSRTPKRSRRSRSRSP 1002
Score = 71 (30.1 bits), Expect = 2.8e-174, Sum P(2) = 2.8e-174
Identities = 23/88 (26%), Positives = 38/88 (43%)
Query: 720 DVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKK- 778
D E+ ES+ + T +R+ + S S+ R K + KSERS+R +
Sbjct: 900 DKEKLESRSKDKKEKDECTPTRK-ERKRRHSTSPSPSRSSSGRRVKSPSPKSERSERSER 958
Query: 779 --SPSPAAREEKKEANKSERSDRKKSPS 804
S +R K++ + K+SPS
Sbjct: 959 SHKESSRSRSSHKDSPRDVSKKAKRSPS 986
Score = 67 (28.6 bits), Expect = 7.5e-174, Sum P(2) = 7.5e-174
Identities = 26/106 (24%), Positives = 49/106 (46%)
Query: 706 EENEDSAVTSSKWDDVEQSESKDDS-NSKGTGLTS-SRRGDLS--SERIQGDSGEDDSAA 761
++ +D + K S S S +S G + S S + + S SER +S S+
Sbjct: 911 KKEKDECTPTRKERKRRHSTSPSPSRSSSGRRVKSPSPKSERSERSERSHKESSRSRSSH 970
Query: 762 REEKKEANK-SERSDR-KKSPSPAAREEKKEANKSERSDRKKSPSP 805
++ ++ +K ++RS ++P + R + KS + R +S SP
Sbjct: 971 KDSPRDVSKKAKRSPSGSRTPKRSRRSRSRSPKKSGKKSRSQSRSP 1016
>UNIPROTKB|F1MHP1 [details] [associations]
symbol:U2SURP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170
Pfam:PF08312 OMA:SILQANS GeneTree:ENSGT00390000010687
EMBL:DAAA02002870 IPI:IPI00701440 Ensembl:ENSBTAT00000012063
Uniprot:F1MHP1
Length = 1035
Score = 1657 (588.4 bits), Expect = 1.9e-170, P = 1.9e-170
Identities = 371/838 (44%), Positives = 508/838 (60%)
Query: 6 MKKQIAEQKLKAFSIGSMG-AKRTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPAAK 64
+ + + E KLKAFSIG M AKRTLS + K
Sbjct: 72 LSRPLLENKLKAFSIGKMSTAKRTLSKKEQEELKKKEDEKAAAEIYEEFLAAFEGSDGNK 131
Query: 65 TNKVWVKAGTYDAGRRREDTSEK-GKLYKPQSRLQEDKDS-SASKAEEYARLLGDKKTES 122
K +V+ G +A + +T EK GK+YKP SR + K+ + S E LL E+
Sbjct: 132 V-KTFVRGGVVNAAKEEHETDEKRGKIYKPSSRFADQKNPPNQSSNERPPSLL---VIET 187
Query: 123 QRLXXXXXXXXXXXSNLEMFKEELKMIQEEREERHKYKGVLKGVYSEEAEP--------- 173
++ SNLE+FKEELK IQEER+ERHK KG L +++
Sbjct: 188 KKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLSRFEPPQSDSDGQRRSMDA 247
Query: 174 PS----AIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMW 229
PS + + + GS D GDP TTNLYLGN+NP++ E+ L + FGR+GPLAS+KIMW
Sbjct: 248 PSRRNRSSGVLDDYAPGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMW 307
Query: 230 PRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVXXXXXXXXXXX 289
PR+DEE+AR RNCGFVAFMNR+D ERALK LNGK + S+EMKLGWGK+V
Sbjct: 308 PRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPPHPIYIPP 367
Query: 290 KMLELTVPPPPSGLPFNAQPASKDKH-RIPKLRPGEPLTREDLDRLDQILNQAYVKVVVP 348
M+E T+PPPPSGLPFNAQP + K+ P L P P +ED ++ L+QA VKVV+P
Sbjct: 368 SMMEHTLPPPPSGLPFNAQPRERLKNPNAPMLPP--PKNKEDFEKT---LSQAIVKVVIP 422
Query: 349 TDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSILQ 408
T+R LL LIHRM+EFVVREGPMFEAMIMN+EI+NP++RFLFENQ+PAH+YYRWK+YSILQ
Sbjct: 423 TERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSILQ 482
Query: 409 GDQPKEWRTNEFRMFDGGSVWRPPPMNLFTQGMPDELVEEEV--ESKTKGSLSNSQRHRL 466
GD P +WRT +FRMF GS WRPPP+N + GM +E E E KG+L QR +L
Sbjct: 483 GDSPTKWRTEDFRMFKNGSFWRPPPLNPYLHGMSEEQETEAFVEEPSKKGALKEEQRDKL 542
Query: 467 EDFLRNLTPERVKVAEAMVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDIL 526
E+ LR LTP + + +AMVFC+ +++AAEEI +CI ESLS T L KKI RLYLVSD+L
Sbjct: 543 EEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSDVL 602
Query: 527 HNCGIKISNASFYRRGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWAV 586
+N K++NAS+YR+ FE++L QIF++++ TY ++ L++E + RVM FRAWEDWA+
Sbjct: 603 YNSSAKVANASYYRKFFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDWAI 662
Query: 587 YPKDYLIKLQNVFLGLSDAVPLDANNGNEEDEDLDGAPLSD-VDG---EDLDGVPLDGAA 642
YP+ +LIKLQN+FLGL + + + + +DLDGAP+ + +DG ED+DG+P+D A
Sbjct: 663 YPEPFLIKLQNIFLGLVNII--EEKEAEDVPDDLDGAPIEEELDGAPLEDVDGIPID-AT 719
Query: 643 LMKSLQRLPHSSSAPDEDDIDGVPCTYNITSATMDGEDLDGVPMDKVKPAR--------- 693
+ L +P S +DD+DGVP AT D + + P+ KV P++
Sbjct: 720 PIDDLDGVPIKSL---DDDLDGVPL-----DATEDSKKNE--PIFKVAPSKWEAVDESEL 769
Query: 694 -AATFIPSKWETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTG--LTSSR-RGDLSSER 749
A SKWE +++E+S ++ + E + +D +SK L S+ + +++ +
Sbjct: 770 EAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPIKEEMTESK 829
Query: 750 IQ--GDSGEDDSAA-RE-EKKEANKSERSDRKKSPSPAAR--EEKKEANKSERSDRKK 801
+ E+ A RE E K + + K P A + +E+ E + + RKK
Sbjct: 830 FSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKAGQSFQEQVEHYRDKLLQRKK 887
>ZFIN|ZDB-GENE-070410-141 [details] [associations]
symbol:zgc:163098 "zgc:163098" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
ZFIN:ZDB-GENE-070410-141 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
InterPro:IPR013170 Pfam:PF08312 GeneTree:ENSGT00390000010687
EMBL:BX927261 IPI:IPI00997649 Ensembl:ENSDART00000122919
ArrayExpress:F1QSP9 Bgee:F1QSP9 Uniprot:F1QSP9
Length = 942
Score = 1435 (510.2 bits), Expect = 3.1e-153, Sum P(2) = 3.1e-153
Identities = 329/745 (44%), Positives = 451/745 (60%)
Query: 67 KVWVKAGTYDAGRRREDTS-EKGKLYKPQSRLQED-KDSSASKAEEYARLLGDKKTESQR 124
K +V+ G +A + E +K KLY+P ++ +++S E + + KK E ++
Sbjct: 69 KTFVRGGIVNATKEEEAAEVKKSKLYRPSAKFSAPLQNTSPVHHAEVKKAVAKKKVEEKK 128
Query: 125 LXXXXXXXXXXXSNLEMFKEELKMIQEEREERHKYK-GVLKGVYSEEAEPPSAIAIYQEE 183
SNLE+FKEELK IQEEREER+K K G V+ + EP + +
Sbjct: 129 -----------KSNLELFKEELKQIQEEREERYKRKKGDSGAVFLGDLEP-----LTRRS 172
Query: 184 TKGSFDSGD--PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRN 241
+K FD P TTNLY+G +NPK+TE+ L + FG+YGPLAS+KIMWPR++EE+ R N
Sbjct: 173 SKFVFDDDPAVPNTTNLYIGCINPKMTEEMLCKEFGKYGPLASVKIMWPRTEEERTRVTN 232
Query: 242 CGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVXXXXXXXXXXXKMLELTVPPPPS 301
GFVAFM RKD ERAL L+GK V +EMKLGWGK+V +L+ T PPPPS
Sbjct: 233 RGFVAFMTRKDAERALAALDGKTVMGFEMKLGWGKAVRIPPQPLYTPIGVLKTTAPPPPS 292
Query: 302 GLPFNAQPASKDKHRIPKLRPGEPLTREDLDRLDQILNQAYVKVVVPTDRTLLMLIHRMV 361
GLPFNAQP + ++ K P +R D + L++A V VV+P +R LL LIHRM+
Sbjct: 293 GLPFNAQPRDRFRNDFTK-----PRSRSQ-DDFYKTLSEAVVTVVIPPERNLLGLIHRMI 346
Query: 362 EFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSILQGDQPKEWRTNEFR 421
EFVVREGPMFEAMIMN+E +NP +RFLF+N+S H+YYRWK+YSILQG+ P WRT+ FR
Sbjct: 347 EFVVREGPMFEAMIMNREKNNPDFRFLFDNKSQEHVYYRWKLYSILQGENPNNWRTSSFR 406
Query: 422 MFDGGSVWRPPPMNLFTQG--MPDE--LVEEEVESKTKGSLSNSQRHRLEDFLRNLTPER 477
MF GGS+W+PP +N + G P+E E E K KG L + R +LE LR LTP R
Sbjct: 407 MFRGGSLWKPPLLNPYLHGDEEPEEASFPSPEEEPK-KGQLKSEHREKLEVLLRGLTPRR 465
Query: 478 VKVAEAMVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNAS 537
++ +AM+FC+E ++AAEEI CI ESLS T L KKI RLYL+SDIL+N K++NAS
Sbjct: 466 DEIGDAMLFCLERAEAAEEIVSCITESLSIAHTPLQKKIARLYLISDILYNSCAKVANAS 525
Query: 538 FYRRGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWAVYPKDYLIKLQN 597
+YR+ FE++L +IF ++ Y N+++RL+AE + R+M FRAWEDWAVYP +LI+LQN
Sbjct: 526 YYRKFFETKLPEIFGDISEAYRNIQARLQAEQFKQRIMGCFRAWEDWAVYPDSFLIQLQN 585
Query: 598 VFLGLSDAVPLDANNGNE-EDEDLDGAPLSDV--DGEDLDGVPLDGAALMKSLQRLPHSS 654
+FLGL P G E E DLDGAPL V D ++DG PLD L P +
Sbjct: 586 IFLGLIK--P-----GEEPESPDLDGAPLDGVPLDRGEIDGTPLDDLD-GSPLTWDPSAI 637
Query: 655 SAPDEDDIDGVPCTYNITSATMDGEDLDGVPMDKVKPARAATFIPSKWETVEENEDSAVT 714
DDIDGVP ++ +D+DGVP D+ T SKWE V+++E S
Sbjct: 638 DGVPVDDIDGVPLGNSV-------DDIDGVPFDEGSDKTLPTVALSKWEKVDDSESSGTI 690
Query: 715 SSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKK--EANKSE 772
S+ ++S ++ NS G +S D SS+ S + + + K E ++S+
Sbjct: 691 SALTAFHRWNDSDNEVNSGGLK-ENSGDSDTSSDEADSPSRFEGADFKSSLKNFELSESK 749
Query: 773 RSDRKKSPSPAAR-EEKKEANKSER 796
R+ ++ +++ E+ K +R
Sbjct: 750 RTRLRELEVKVMNFQDELESGKRQR 774
Score = 81 (33.6 bits), Expect = 3.1e-153, Sum P(2) = 3.1e-153
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 721 VEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKKSP 780
+E+ KDD + S ++ D S + + D GE+ S R+++K + KSE DR+KS
Sbjct: 806 LEEEFDKDDQEKRDKH--SQKQKDRSKKDERRDKGEERSKTRDKEK-SRKSE--DREKSR 860
Query: 781 SPAA-REEKKEANKSER 796
+ +E+++E+ KS +
Sbjct: 861 GRSRDKEDRRESIKSRK 877
Score = 66 (28.3 bits), Expect = 1.2e-151, Sum P(2) = 1.2e-151
Identities = 16/57 (28%), Positives = 36/57 (63%)
Query: 749 RIQGDSGEDDSAAREE--KKEANKSERSDRK-KSPSPAAREEKKEANKSERSDRKKS 802
R++ + +DD R++ +K+ ++S++ +R+ K + +K+++ KSE DR+KS
Sbjct: 805 RLEEEFDKDDQEKRDKHSQKQKDRSKKDERRDKGEERSKTRDKEKSRKSE--DREKS 859
>WB|WBGene00015581 [details] [associations]
symbol:C07H6.4 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] InterPro:IPR000061 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102
PROSITE:PS50128 SMART:SM00360 SMART:SM00648 GO:GO:0009792
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
HSSP:P19339 InterPro:IPR008942 SUPFAM:SSF48464 EMBL:FO080423
InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
eggNOG:NOG307351 KO:K12842 GeneTree:ENSGT00390000010687
RefSeq:NP_498648.1 ProteinModelPortal:Q95YF1 SMR:Q95YF1
STRING:Q95YF1 PaxDb:Q95YF1 EnsemblMetazoa:C07H6.4 GeneID:176063
KEGG:cel:CELE_C07H6.4 UCSC:C07H6.4 CTD:176063 WormBase:C07H6.4
HOGENOM:HOG000018806 InParanoid:Q95YF1 OMA:AEGFKTR NextBio:890952
Uniprot:Q95YF1
Length = 933
Score = 574 (207.1 bits), Expect = 3.7e-100, Sum P(2) = 3.7e-100
Identities = 125/319 (39%), Positives = 186/319 (58%)
Query: 137 SNLEMFKEELKMIQEEREERHKYKGVLKGVYSEEAEPPSAIAIYQEETKGS--FDSGDPC 194
S +EMFK EL+ +QE+RE+R + L+ V ++A + +G+ FD DP
Sbjct: 140 SQMEMFKMELQRVQEDREKRKDLRHHLEKVGMDQAVVERLAPTVERGFQGTSEFDD-DPY 198
Query: 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGE 254
TTN+Y+ N+ +TE L+ FG +GPLA++KI++PRS+EE+ R C FVAFM+R D +
Sbjct: 199 TTNVYVSNIPHSVTEDDLLFTFGSFGPLAALKILYPRSEEERRRPHICAFVAFMSRADVD 258
Query: 255 RALKYLNGKDVQSYEMKLGWGKSVXXXXXXXXXXXKMLELTVPPPPSGLPFNAQPASKD- 313
R + + V++ ++ + + V + L P P S LPFNAQP D
Sbjct: 259 RFMAEVRVIIVRNEPIRFAFARPVQIPAIPYYIPPVLHALQHPDPTSNLPFNAQPDCADA 318
Query: 314 KHRIPKLRPGEPL----TREDLDRLD--QILNQAYVKVVVPTDRTLLMLIHRMVEFVVRE 367
K + K P+ T+ D +++ + ++VVVP DR L+ ++ RM +VV E
Sbjct: 319 KKFLEKYNTFPPMHALPTKGQYGYEDFTELIRNSQIRVVVPPDRKLVRVMDRMAVYVVTE 378
Query: 368 GPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSILQGDQPKEWRTNEFRMFDGGS 427
GP FEAMI +E NP+++FL++N S H+YYRW++YS+LQGD +EWR FRMF+ GS
Sbjct: 379 GPQFEAMICAEEFQNPMFQFLWDNTSALHVYYRWRIYSLLQGDTIEEWRRTPFRMFENGS 438
Query: 428 VWRPP-PMNLFTQGMPDEL 445
W PP P+N MP EL
Sbjct: 439 WWIPPYPINELRDAMPKEL 457
Score = 452 (164.2 bits), Expect = 3.7e-100, Sum P(2) = 3.7e-100
Identities = 135/379 (35%), Positives = 199/379 (52%)
Query: 448 EEVESKTKGSLSNSQRHRLEDFLRNLTPERVKVAEAMVFCMEHSDAAEEICECIMESLSN 507
E+ E K +S+ +R +LE +R LTPE+ +A MV+C++++ A EICEC+ +SL+
Sbjct: 512 EKNEKKRNNRMSDKRRDKLETLIRELTPEKTSIAATMVWCIQNAKYAAEICECVYDSLTI 571
Query: 508 ESTALHKKIGRLYLVSDILHNCGIK-ISNASFYRRGFESRLFQIFTEMHITYVNLESRLK 566
E L+KKI RLYL++DIL NC + + + YR FE+ L +IF + Y + SR+K
Sbjct: 572 EDIPLYKKISRLYLINDILSNCVQRNVRDVFLYRSHFEALLEKIFVAVGKAYRAIPSRIK 631
Query: 567 AEGLRTRVMQVFRAWEDWAVYPKDYLIKLQNVFLGLSDAVPLDANNGNEEDEDLDGAPLS 626
E + RVM VFR +E+ AVYP D LI QNVFLGL + G E+ E+ D L
Sbjct: 632 QEQFKQRVMCVFRNFEEMAVYPTDKLIHNQNVFLGLIEI-------GKEKSEERDNQKLE 684
Query: 627 DV-DGEDLDGVPLDGAALMKSLQRLPHSSSAPDEDDIDGVPCTYNITSATMDGEDLDGV- 684
+ D EDLDGVPL+ KS+Q + + S D+D IDG+P + +T
Sbjct: 685 EEEDEEDLDGVPLEEE---KSVQNM--NESLYDDDGIDGIPLHEEVKPSTSTYSTASKFK 739
Query: 685 PMDKVKPARAATFIPSKWE------TVEENED-SAV-----TSSK---WDDVEQSESKDD 729
P++ K + F SKW+ EE+ED V T+S+ D + E KD
Sbjct: 740 PVESRKRDGSPIF-SSKWDHDGRKSNEEEDEDIDGVMITDDTTSENLQRDSLSPGEIKDK 798
Query: 730 SNSKGTGLTSS---RRGDLSSERIQGDSGEDDSAAREE---KKEANKSERSDRKK-SPSP 782
+S T LT S RR + ++ + DD A + K++ ++ R + +K +
Sbjct: 799 ESSF-TVLTPSDEKRRKLIRDVEVRAIAMLDDLEADRDPDAKRKVDEFRRCEMEKVEKAL 857
Query: 783 AAREEKKEANKSERSDRKK 801
+ E KK KSER KK
Sbjct: 858 RSGESKKSDEKSERKSEKK 876
Score = 99 (39.9 bits), Expect = 6.1e-63, Sum P(2) = 6.1e-63
Identities = 56/220 (25%), Positives = 97/220 (44%)
Query: 604 DAVPLD----ANNGNE---EDEDLDGAPL-SDVDG-----------EDLDGVPLDGAALM 644
D VPL+ N NE +D+ +DG PL +V + ++ DG+ +
Sbjct: 693 DGVPLEEEKSVQNMNESLYDDDGIDGIPLHEEVKPSTSTYSTASKFKPVESRKRDGSPIF 752
Query: 645 KSLQRLPHSSSAPDED-DIDGVPCTYNITSATMDGEDLDGVPMDKVKPARAATFIPSKWE 703
S S +ED DIDGV T + TS + + L + K K + PS +
Sbjct: 753 SSKWDHDGRKSNEEEDEDIDGVMITDDTTSENLQRDSLSPGEI-KDKESSFTVLTPSDEK 811
Query: 704 TVEENEDSAVTS-SKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAR 762
+ D V + + DD+E ++ D+ K + RR ++ E+++ +S
Sbjct: 812 RRKLIRDVEVRAIAMLDDLE-ADRDPDAKRK---VDEFRRCEM--EKVEKALRSGESKKS 865
Query: 763 EEKKEANKSERSDRKKSPSPAAREEKKEANKSERSDRKKS 802
+EK E KSE+ ++K+ +E K+ ++S DR +S
Sbjct: 866 DEKSE-RKSEKKEKKRD-----KERKRSRSRSRDRDRDRS 899
Score = 94 (38.1 bits), Expect = 2.1e-62, Sum P(2) = 2.1e-62
Identities = 39/166 (23%), Positives = 72/166 (43%)
Query: 639 DGAALMKSLQRLPHSSSAPDED-DIDGVPCTYNITSATMDGEDLDGVPMDKVKPARAATF 697
DG+ + S S +ED DIDGV T + TS + + L + K K +
Sbjct: 747 DGSPIFSSKWDHDGRKSNEEEDEDIDGVMITDDTTSENLQRDSLSPGEI-KDKESSFTVL 805
Query: 698 IPSKWETVEENEDSAVTS-SKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGE 756
PS + + D V + + DD+E ++ D+ K + G+S +
Sbjct: 806 TPSDEKRRKLIRDVEVRAIAMLDDLE-ADRDPDAKRKVDEFRRCEMEKVEKALRSGESKK 864
Query: 757 DDSAAREEKKEANKSERSDRKKSPSPAAREEKKEANKSERS-DRKK 801
D + + ++ K +RK+S S +R+ ++ ++ +RS DR +
Sbjct: 865 SDEKSERKSEKKEKKRDKERKRSRS-RSRDRDRDRSRRDRSRDRSR 909
Score = 86 (35.3 bits), Expect = 1.4e-61, Sum P(2) = 1.4e-61
Identities = 51/210 (24%), Positives = 86/210 (40%)
Query: 615 EEDEDLDGAPLSD-----------VDGEDLDGVPLDGAALMKSLQRLPHSSSAPDED-DI 662
E++EDLDG PL + D + +DG+PL + S P E
Sbjct: 687 EDEEDLDGVPLEEEKSVQNMNESLYDDDGIDGIPLHEEVKPSTSTYSTASKFKPVESRKR 746
Query: 663 DGVPCTYNI------TSATMDGEDLDGVPM-DKVKPARAATFIPSKWETVEENEDSAVTS 715
DG P + S + ED+DGV + D S E +++ E S
Sbjct: 747 DGSPIFSSKWDHDGRKSNEEEDEDIDGVMITDDTTSENLQRDSLSPGE-IKDKESSFTVL 805
Query: 716 SKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSERS- 774
+ D+ + +D + + DL ++R + D R E ++ K+ RS
Sbjct: 806 TPSDEKRRKLIRD-VEVRAIAMLD----DLEADRDPDAKRKVDEFRRCEMEKVEKALRSG 860
Query: 775 DRKKSPSPAAREEKKEANKSERSDRKKSPS 804
+ KKS + R+ +K+ K ++ +RK+S S
Sbjct: 861 ESKKSDEKSERKSEKKEKKRDK-ERKRSRS 889
Score = 65 (27.9 bits), Expect = 2.3e-59, Sum P(2) = 2.3e-59
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 767 EANKSER-SDRKKSPSPAAREEKKEANKSERSDRKKS 802
E++K+ R SD +K REE+KE + E++++K++
Sbjct: 483 ESSKNRRNSDAEKEERKMRREEEKERKRREKNEKKRN 519
Score = 63 (27.2 bits), Expect = 3.8e-59, Sum P(2) = 3.8e-59
Identities = 43/192 (22%), Positives = 75/192 (39%)
Query: 609 DANNGNEE-DEDLDGAPLSD-VDGEDLDGVPLDGAALMKSLQRLPHSSSAPDEDDIDGVP 666
D NEE DED+DG ++D E+L L + + + P ++ +
Sbjct: 759 DGRKSNEEEDEDIDGVMITDDTTSENLQRDSLSPGEIKD--KESSFTVLTPSDEKRRKLI 816
Query: 667 CTYNITSATMDGEDLDGVPMDKVKPARAAT--FIPSKWETVEENEDSAVTSSKWDDVEQS 724
+ + M LD + D+ A+ F + E VE+ S SK D E+S
Sbjct: 817 RDVEVRAIAM----LDDLEADRDPDAKRKVDEFRRCEMEKVEKALRSG--ESKKSD-EKS 869
Query: 725 ESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKKSPSPAA 784
E K + K R S +R + S D S R+ ++ ++ DR+
Sbjct: 870 ERKSEKKEKKRDKERKRSRSRSRDRDRDRSRRDRS--RDRSRDRDRDRDRDRRD------ 921
Query: 785 REEKKEANKSER 796
R+ ++ ++ R
Sbjct: 922 RDRDRDRDRRYR 933
Score = 62 (26.9 bits), Expect = 4.8e-59, Sum P(2) = 4.8e-59
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 758 DSAAREEKKEANKSERSDRKKSPSPAAREEKKEANKSER-SDRKK 801
+S+ +A K ER R++ R EK E ++ R SD+++
Sbjct: 483 ESSKNRRNSDAEKEERKMRREEEKERKRREKNEKKRNNRMSDKRR 527
Score = 45 (20.9 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 138 NLEMFKEELKMIQEEREERHK 158
N + KEE KM +EE +ER +
Sbjct: 490 NSDAEKEERKMRREEEKERKR 510
Score = 39 (18.8 bits), Expect = 6.8e-39, Sum P(2) = 6.8e-39
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 79 RRREDTSEKGKLYKPQSRLQEDKDSSASKAEEYARLLGDKKT 120
RR E+ K + + R D K E R L +KT
Sbjct: 501 RREEEKERKRREKNEKKRNNRMSDKRRDKLETLIRELTPEKT 542
>UNIPROTKB|C9JB80 [details] [associations]
symbol:U2SURP "U2 snRNP-associated SURP motif-containing
protein" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000061 Pfam:PF01805 PROSITE:PS50128
SMART:SM00648 GO:GO:0005634 GO:GO:0003723 GO:GO:0006396
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582
SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312
EMBL:AC018450 EMBL:AC026304 IPI:IPI00790699 HGNC:HGNC:30855
HOGENOM:HOG000286037 ChiTaRS:u2surp ProteinModelPortal:C9JB80
SMR:C9JB80 STRING:C9JB80 PRIDE:C9JB80 Ensembl:ENST00000480029
ArrayExpress:C9JB80 Bgee:C9JB80 Uniprot:C9JB80
Length = 488
Score = 949 (339.1 bits), Expect = 2.0e-95, P = 2.0e-95
Identities = 201/451 (44%), Positives = 284/451 (62%)
Query: 360 MVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSILQGDQPKEWRTNE 419
M+EFVVREGPMFEAMIMN+EI+NP++RFLFENQ+PAH+YYRWK+YSILQGD P +WRT +
Sbjct: 1 MIEFVVREGPMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSILQGDSPTKWRTED 60
Query: 420 FRMFDGGSVWRPPPMNLFTQGMPDELVEEEV--ESKTKGSLSNSQRHRLEDFLRNLTPER 477
FRMF GS WRPPP+N + GM +E E E KG+L QR +LE+ LR LTP +
Sbjct: 61 FRMFKNGSFWRPPPLNPYLHGMSEEQETEAFVEEPSKKGALKEEQRDKLEEILRGLTPRK 120
Query: 478 VKVAEAMVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNAS 537
+ +AMVFC+ +++AAEEI +CI ESLS T L KKI RLYLVSD+L+N K++NAS
Sbjct: 121 NDIGDAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSDVLYNSSAKVANAS 180
Query: 538 FYRRGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWAVYPKDYLIKLQN 597
+YR+ FE++L QIF++++ TY ++ L++E + RVM FRAWEDWA+YP+ +LIKLQN
Sbjct: 181 YYRKFFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDWAIYPEPFLIKLQN 240
Query: 598 VFLGLSDAVPLDANNGNEEDEDLDGAPLSD-VDG---EDLDGVPLDGAALMKSLQRLPHS 653
+FLGL + + + + +DLDGAP+ + +DG ED+DG+P+D A + L +P
Sbjct: 241 IFLGLVNII--EEKETEDVPDDLDGAPIEEELDGAPLEDVDGIPID-ATPIDDLDGVPIK 297
Query: 654 SSAPDEDDIDGVPCTYNITSATMDGEDLDGVPMDKVKPARAATFIPSKWETVEENEDSAV 713
S +DD+DGVP AT D + + P+ KV P++ S E E AV
Sbjct: 298 SL---DDDLDGVPL-----DATEDSKKNE--PIFKVAPSKWEAVDES------ELEAQAV 341
Query: 714 TSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSER 773
T+SKW+ +Q E ++ ++ S D S + + + + +EE E+ S+
Sbjct: 342 TTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSE-EHHLYSNPIKEEMTESKFSKY 400
Query: 774 SDRKKSPSPAARE-EKKEANKSERSDRKKSP 803
S+ + RE E K + + K P
Sbjct: 401 SEMSEEKRAKLREIELKVMKFQDELESGKRP 431
>TAIR|locus:2179295 [details] [associations]
symbol:RRC1 "reduced red-light responses in cry1cry2
background 1" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0000394 "RNA splicing, via endonucleolytic
cleavage and ligation" evidence=RCA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=RCA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0009888 "tissue
development" evidence=RCA] [GO:0010228 "vegetative to reproductive
phase transition of meristem" evidence=RCA] [GO:0010413
"glucuronoxylan metabolic process" evidence=RCA] [GO:0010638
"positive regulation of organelle organization" evidence=RCA]
[GO:0016926 "protein desumoylation" evidence=RCA] [GO:0033044
"regulation of chromosome organization" evidence=RCA] [GO:0045492
"xylan biosynthetic process" evidence=RCA] [GO:0050665 "hydrogen
peroxide biosynthetic process" evidence=RCA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
PROSITE:PS50800 SMART:SM00360 SMART:SM00648 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 eggNOG:COG0724 InterPro:IPR006569 SMART:SM00582
SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312
KO:K12842 EMBL:AF360212 EMBL:AY040060 IPI:IPI00527464
RefSeq:NP_568464.1 UniGene:At.23362 PDB:2E62 PDBsum:2E62
ProteinModelPortal:Q9C5J3 SMR:Q9C5J3 IntAct:Q9C5J3 PRIDE:Q9C5J3
EnsemblPlants:AT5G25060.1 GeneID:832577 KEGG:ath:AT5G25060
TAIR:At5g25060 HOGENOM:HOG000030509 InParanoid:Q9C5J3 OMA:EPYIMIT
PhylomeDB:Q9C5J3 ProtClustDB:CLSN2689864 EvolutionaryTrace:Q9C5J3
ArrayExpress:Q9C5J3 Genevestigator:Q9C5J3 Uniprot:Q9C5J3
Length = 946
Score = 817 (292.7 bits), Expect = 2.7e-86, Sum P(2) = 2.7e-86
Identities = 213/610 (34%), Positives = 316/610 (51%)
Query: 65 TNKVWVKAGTYDAGRRR------EDTSEKGKLYKPQSRLQED--KDSSASKAEEYARLLG 116
T K +V+ GT + G + E + + G + K SR ASK +E
Sbjct: 48 TTKTFVRGGTINPGDKPKVDSEGEKSKDGGSVSKKGSRYVPSFLPPPLASKGKE-----P 102
Query: 117 DKKTESQRLXXXXXXXXXXXSNLEMFKEELKMIQEEREERHKYKGVLKGVYSEEAEPPSA 176
+KK E +R N++ F EELK QE RE R++ + +G S +
Sbjct: 103 EKKREEER---PREREKGKTRNIDNFMEELKREQEMRERRNQDRD-RQGDSSPSSRFDEL 158
Query: 177 IAIYQEETK-GSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEE 235
+ + GSFD GDP TTNLY+GNL+PK+ E L+ FGR+GP+AS+KIMWPR+DEE
Sbjct: 159 PDDFDPSGRPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEE 218
Query: 236 KARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVXXXXXXXXXXXKMLELT 295
K R RNCGFV+FMNR DG+ A + G V YE+K+GWGK+V +
Sbjct: 219 KRRQRNCGFVSFMNRADGQAAKDEMQGIIVYEYELKIGWGKAVS-----------LPSQA 267
Query: 296 VPPPPSGLPFNAQPASKDKHRIPKLRPGEPLTREDLDRLDQIL---NQAYVKVVVPTDRT 352
+P PP G A + + + + + G P+ ++ +++ N + VV P D
Sbjct: 268 LPAPPPG--HMAIRSKEGCNLVFSGQTGPPIITSVPNQNSELVLTPNVPDITVVTPEDEH 325
Query: 353 LLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSILQGDQP 412
L +I + +V+ FE IM + NPL++F+FE S H YY W++YS QGD
Sbjct: 326 LRHVIDTLALYVLDGECAFEQAIMERGRGNPLFKFMFELGSKEHTYYVWRLYSFAQGDTL 385
Query: 413 KEWRTNEFRMFDGGSVWRPPPMNLF-TQGMPDELVEEEVESKTKGS-----LSNSQRHRL 466
+ WRT + M G W PPP+ + TQ E +T+ + L++ QR
Sbjct: 386 QRWRTEPYIMITGSGRWIPPPLPVTRTQEHEKESASTYAAGRTRRAEVERTLTDPQRDEF 445
Query: 467 EDFLRNLTPERVKVAEAMVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDIL 526
ED LR LT ER ++ EAM F ++++DAA E+ E + ESL+ + T++ K+ RL LVSDIL
Sbjct: 446 EDMLRALTLERSQIKEAMGFALDNADAAGEVVEVLTESLTLKETSIPTKVARLMLVSDIL 505
Query: 527 HNCGIKISNASFYRRGFESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWAV 586
HN ++ NAS YR FE+ L I + Y ++ R+ AE L+ RV++V + W DW +
Sbjct: 506 HNSSARVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWADWFL 565
Query: 587 YPKDYLIKLQNVFL--GLSDAVPLDANNGNE-EDEDLDGAP-LSDVDGEDLDGVPLDG-A 641
+ Y+ L++ FL G+S + G+ E E+ A +SD+ + D G
Sbjct: 566 FSDAYIYGLRSTFLRSGVSGVTSFHSICGDAPEIENKSYADNMSDIGKINPDAALAIGKG 625
Query: 642 ALMKSLQRLP 651
A + L LP
Sbjct: 626 AARQELMNLP 635
Score = 65 (27.9 bits), Expect = 2.7e-86, Sum P(2) = 2.7e-86
Identities = 41/166 (24%), Positives = 62/166 (37%)
Query: 650 LPHSSSAPDEDDID---------GVPCTYNITSATMDGEDLDGVPMDKVKPARAATFIP- 699
LP S A D+D+ D G T IT DGEDL G + +P
Sbjct: 738 LPASKWARDDDEADDEQKRSSSSGSDNTGGITFKA-DGEDLKGNDCVRAQPDNGMDEEQR 796
Query: 700 SKWETVE----ENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSG 755
K +E E ++ + + E+ E K + N K + G R Q S
Sbjct: 797 QKRRRIEVALIEYRET-LEEQGMKNPEEIERKVEINRKRLEVDYGLSGPNEGNRNQ-KSI 854
Query: 756 EDDSAAREEKKEANKSERSDRKKSPSPAAREEKKEANKSERSDRKK 801
+ RE+ +E++K KS SP + +E + DR +
Sbjct: 855 IERKEKREDSQESSKKRHRGENKSQSPPRKSSTRERDHDLGRDRDR 900
Score = 58 (25.5 bits), Expect = 1.5e-85, Sum P(2) = 1.5e-85
Identities = 23/99 (23%), Positives = 44/99 (44%)
Query: 703 ETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAR 762
E E+ EDS +S K + E+K S + + T R DL +R D R
Sbjct: 856 ERKEKREDSQESSKKR---HRGENKSQSPPRKSS-TRERDHDLGRDR-------DRERHR 904
Query: 763 EEKKEANKSERSDRKKSPSPAAREEKKEANKSERSDRKK 801
+ ++ + + DR++ S R++ + + +R R++
Sbjct: 905 DRDRQHDLNRDRDRREKSSSHDRDDNDRSKERDRDWRRR 943
Score = 53 (23.7 bits), Expect = 5.0e-85, Sum P(2) = 5.0e-85
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 721 VEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSERS--DRKK 778
+E E+ ++ K R+ +++ +R++ D G E N++++S +RK+
Sbjct: 807 IEYRETLEEQGMKNPE-EIERKVEINRKRLEVDYGLSGP------NEGNRNQKSIIERKE 859
Query: 779 SPSPAAREEKKEANKSERSDRKKSPSP 805
RE+ +E++K KS SP
Sbjct: 860 K-----REDSQESSKKRHRGENKSQSP 881
>TAIR|locus:2183775 [details] [associations]
symbol:AT5G10800 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006396
"RNA processing" evidence=IEA] [GO:0000394 "RNA splicing, via
endonucleolytic cleavage and ligation" evidence=RCA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=RCA]
InterPro:IPR000061 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
SMART:SM00360 SMART:SM00648 EMBL:CP002688 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582
SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312
KO:K12842 UniGene:At.6008 IPI:IPI01019487 RefSeq:NP_196641.2
UniGene:At.32334 ProteinModelPortal:F4KIA8 SMR:F4KIA8 PRIDE:F4KIA8
EnsemblPlants:AT5G10800.1 GeneID:830947 KEGG:ath:AT5G10800
OMA:WAREDDE Uniprot:F4KIA8
Length = 947
Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
Identities = 224/693 (32%), Positives = 341/693 (49%)
Query: 138 NLEMFKEELKMIQEEREERHKYKGVLKGVYSEEAEPP--SAIAIYQEETK--GSFDSGDP 193
N++ F EELK QE RE R++ + + S+ + Y + + GS D GDP
Sbjct: 125 NIDHFVEELKREQEIRERRNQDRENSRDHNSDNTSSSRFDELPDYFDPSGRLGSLDDGDP 184
Query: 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDG 253
TTNLY+ NL+ K+ E L+ FGR+GP+AS+KIMWPR++EEK R R+CGFVAFMNR DG
Sbjct: 185 QTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRERHCGFVAFMNRADG 244
Query: 254 ERALKYLNGKDVQSYEMKLGWGKSVXXXXXXXXXXXKMLELTVPPPPSGLPFNAQPASKD 313
E A + + G V YE+K+GWGK V + +P PP G A + +
Sbjct: 245 EAAKEKMQGIIVYEYELKIGWGKVVF-----------LPSQALPAPPPG--HMAIRSKEG 291
Query: 314 KHRIPKLRPGEPLTREDLDRLDQIL--NQAYVKVVVPTDRTLLMLIHRMVEFVVREGPMF 371
+ I + G P+ + +L N + V+ P D L +I M V+ G F
Sbjct: 292 CNLIFSVTSGPPMNSVPNQNSELVLTPNVPDITVISPEDEHLKQIIDTMALNVLDGGCAF 351
Query: 372 EAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSILQGDQPKEWRTNEFRMFDGGSVWRP 431
E IM + NPL+ FLFE S H YY W++YS QGD + WRT + M G W P
Sbjct: 352 EQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPYIMIAGSGRWIP 411
Query: 432 PPMNLFTQGMPDELVEEE---VESKTK-----GSLSNSQRHRLEDFLRNLTPERVKVAEA 483
PP+ T+ P+ E K++ +L++SQR ED LR LT ER ++ EA
Sbjct: 412 PPLPA-TRS-PEHGKESRGTYAAGKSRCTEAEQTLTDSQRDEFEDMLRALTLERSQIREA 469
Query: 484 MVFCMEHSDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASFYRRGF 543
M F +++++AA E+ E + ESL+ + T++ K+ RL LVSDI+HN ++ NAS YR F
Sbjct: 470 MGFALDNAEAAGEVVEVLTESLTLKETSIPTKVARLMLVSDIIHNSSARVKNASAYRTKF 529
Query: 544 ESRLFQIFTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWAVYPKDYLIKLQNVFLGLS 603
E+ L I + Y ++ R+ AE LR RV++V + W DW ++ Y+ L+ FL
Sbjct: 530 EATLPDIMESFNDLYHSVHGRITAEALRERVLKVLQVWADWFLFSDAYINGLRATFLRSR 589
Query: 604 D--AVPLDANNGNEEDEDLDGAPLSDVDGEDLDGVPLDGAALMKSLQRLPHSSSAPDEDD 661
+ + G+ D + G + +++ D D + D A M + P +
Sbjct: 590 NFGVTSFHSICGDAPDIEKKGL-IGNMN--DADKINQDAALAMGEGAARQELMNRPISE- 645
Query: 662 IDGVPCTYNITSATMDGEDLDGVPMDKVKPARAATFIPSKWETVEENEDSAVTSSKWDDV 721
++ C +N S + G ++ + +K A +E V+EN S W++V
Sbjct: 646 LER-RCRHNGLSL-LGGREMMVARLVCLKDAEKQR----GYEVVDENAKYRQGHSTWEEV 699
Query: 722 EQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKE--------ANKSER 773
E K S + + DL+S I E + ++EK + A + +
Sbjct: 700 N-IEPKRMKTSYDK-VETEEPVDLAST-IPIPQPELKAFVKKEKIDLILPTSRWAREDDE 756
Query: 774 SD--RKKSPSPAAREEKKEANKSERSDRKKSPS 804
+D +KKS S + K++ D K PS
Sbjct: 757 TDDEQKKSYSSGSDNAGGITFKTDEEDLKADPS 789
>UNIPROTKB|H0Y8D9 [details] [associations]
symbol:U2SURP "U2 snRNP-associated SURP motif-containing
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC018450 EMBL:AC026304 HGNC:HGNC:30855
ChiTaRS:u2surp Ensembl:ENST00000463563 Bgee:H0Y8D9 Uniprot:H0Y8D9
Length = 439
Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
Identities = 162/363 (44%), Positives = 209/363 (57%)
Query: 6 MKKQIAEQKLKAFSIGSMG-AKRTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPAAK 64
+ + + E KLKAFSIG M AKRTLS + K
Sbjct: 74 LSRPLLENKLKAFSIGKMSTAKRTLSKKEQEELKKKEDEKAAAEIYEEFLAAFEGSDGNK 133
Query: 65 TNKVWVKAGTYDAGRRREDTSEK-GKLYKPQSRLQEDKDS-SASKAEEYARLLGDKKTES 122
K +V+ G +A + +T EK GK+YKP SR + K+ + S E LL E+
Sbjct: 134 V-KTFVRGGVVNAAKEEHETDEKRGKIYKPSSRFADQKNPPNQSSNERPPSLL---VIET 189
Query: 123 QRLXXXXXXXXXXXSNLEMFKEELKMIQEEREERHKYKGVLKGVYSEEAEP--------- 173
++ SNLE+FKEELK IQEER+ERHK KG L +++
Sbjct: 190 KKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLSRFEPPQSDSDGQRRSMDA 249
Query: 174 PS----AIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMW 229
PS + + + GS D GDP TTNLYLGN+NP++ E+ L + FGR+GPLAS+KIMW
Sbjct: 250 PSRRNRSSGVLDDYAPGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMW 309
Query: 230 PRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVXXXXXXXXXXX 289
PR+DEE+AR RNCGFVAFMNR+D ERALK LNGK + S+EMKLGWGK+V
Sbjct: 310 PRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPPHPIYIPP 369
Query: 290 KMLELTVPPPPSGLPFNAQPASKDKH-RIPKLRPGEPLTREDLDRLDQILNQAYVKVVVP 348
M+E T+PPPPSGLPFNAQP + K+ P L P P +ED ++ L+QA VKVV+P
Sbjct: 370 SMMEHTLPPPPSGLPFNAQPRERLKNPNAPMLPP--PKNKEDFEKT---LSQAIVKVVIP 424
Query: 349 TDR 351
T+R
Sbjct: 425 TER 427
>UNIPROTKB|E7EW00 [details] [associations]
symbol:U2SURP "U2 snRNP-associated SURP motif-containing
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC018450 EMBL:AC026304 HGNC:HGNC:30855
ChiTaRS:u2surp IPI:IPI00979562 ProteinModelPortal:E7EW00 SMR:E7EW00
Ensembl:ENST00000488497 UCSC:uc011bnj.1 ArrayExpress:E7EW00
Bgee:E7EW00 Uniprot:E7EW00
Length = 425
Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
Identities = 152/345 (44%), Positives = 196/345 (56%)
Query: 6 MKKQIAEQKLKAFSIGSMG-AKRTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPAAK 64
+ + + E KLKAFSIG M AKRTLS + K
Sbjct: 72 LSRPLLENKLKAFSIGKMSTAKRTLSKKEQEELKKKEDEKAAAEIYEEFLAAFEGSDGNK 131
Query: 65 TNKVWVKAGTYDAGRRREDTSEK-GKLYKPQSRLQEDKDS-SASKAEEYARLLGDKKTES 122
K +V+ G +A + +T EK GK+YKP SR + K+ + S E LL E+
Sbjct: 132 V-KTFVRGGVVNAAKEEHETDEKRGKIYKPSSRFADQKNPPNQSSNERPPSLL---VIET 187
Query: 123 QRLXXXXXXXXXXXSNLEMFKEELKMIQEEREERHKYKGVLKGVYSEEAEP--------- 173
++ SNLE+FKEELK IQEER+ERHK KG L +++
Sbjct: 188 KKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLSRFEPPQSDSDGQRRSMDA 247
Query: 174 PS----AIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMW 229
PS + + + GS D GDP TTNLYLGN+NP++ E+ L + FGR+GPLAS+KIMW
Sbjct: 248 PSRRNRSSGVLDDYAPGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMW 307
Query: 230 PRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVXXXXXXXXXXX 289
PR+DEE+AR RNCGFVAFMNR+D ERALK LNGK + S+EMKLGWGK+V
Sbjct: 308 PRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPPHPIYIPP 367
Query: 290 KMLELTVPPPPSGLPFNAQPASKDKH-RIPKLRPGEPLTREDLDR 333
M+E T+PPPPSGLPFNAQP + K+ P L P P +ED ++
Sbjct: 368 SMMEHTLPPPPSGLPFNAQPRERLKNPNAPMLPP--PKNKEDFEK 410
>DICTYBASE|DDB_G0281687 [details] [associations]
symbol:DDB_G0281687 "U2 snRNP-associated SURP
motif-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
dictyBase:DDB_G0281687 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 EMBL:AAFI02000042 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 eggNOG:NOG307351 RefSeq:XP_640578.4
ProteinModelPortal:Q54TL3 EnsemblProtists:DDB0252764 GeneID:8623186
KEGG:ddi:DDB_G0281687 OMA:GINYCAI Uniprot:Q54TL3
Length = 951
Score = 424 (154.3 bits), Expect = 3.5e-52, Sum P(4) = 3.5e-52
Identities = 93/312 (29%), Positives = 171/312 (54%)
Query: 343 VKVVVPTDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWK 402
++V +P + + +I + +V +EG FE +I +E SN ++FLF++QS + YY WK
Sbjct: 504 IQVQIPQNLFIKSIIDNLAYYVSKEGYPFEKLIQEREYSNMNFQFLFDHQSDDYYYYSWK 563
Query: 403 MYSILQGDQPKEWRTNEFRMFDGGSVWRPPPMN-LFTQGMPDELVEEEVES-KTKGSLSN 460
+YS++ GD W+ M ++ PP ++ Q + + +++ T S SN
Sbjct: 564 VYSLINGDTKTNWKLKPIEMIKDYLIFIPPTIDDQQLQQQQQQQQQPHIQNPSTIASNSN 623
Query: 461 SQ--------RHRLEDFLRNLTPERVKVAEAMVFCMEHSDAAEEICECIM----ESLSNE 508
Q R + E++++NLT +R KV E MV +++SD + +I + I+ +S+SN
Sbjct: 624 IQQQPLPISLRVKFEEYVKNLTAQREKVCELMVMSIDNSDYSSDIVDIIVGSFFDSISNL 683
Query: 509 S--TALHKKIGRLYLVSDILHNCGIKISNASFYRRGFESRLFQIFTEMHITYVNLESRLK 566
+ +++ KI +LYL+SDILHNC + + N S YR FE++L +F + TY ++ R+
Sbjct: 684 NGKESINSKISKLYLISDILHNCTVNVKNVSSYRGLFENKLALVFQNLSSTYRSIGGRVS 743
Query: 567 AEGLRTRVMQVFRAWEDWAVYPKDYLIKLQNVF------LGLSDAVPLDANNGNEEDEDL 620
A+ + ++ +V +W+ ++Y K +L+ L+ F + N EED+D+
Sbjct: 744 AQNFKEKITKVLNSWDKSSLYSKSFLLGLRFTFSIYVKPTTTATTTTTTQNQNIEEDDDI 803
Query: 621 DGAPLSDVDGED 632
DG P++ V ++
Sbjct: 804 DGIPINSVKNDE 815
Score = 189 (71.6 bits), Expect = 3.5e-52, Sum P(4) = 3.5e-52
Identities = 48/139 (34%), Positives = 77/139 (55%)
Query: 139 LEMFKEELKMIQEEREERHKYKGVLKGVYSEEAEPPSAIAIYQEETKGSFDSGDPCTTNL 198
++ K+E K IQEERE K K K S + S+ ++ +EET + T L
Sbjct: 338 IDTLKDEFKQIQEERE---KDK---KSTTSSSSTSLSSSSV-EEETDEEY------YTTL 384
Query: 199 YLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRN-CGFVAFMNRKDGERAL 257
+LG L+ + EQ + E+F YG + SIKI+ P++++++ RG N C V + +D A+
Sbjct: 385 FLGTLSVESNEQVIDELFSTYGIINSIKIITPKNEDDRKRGINYCAIVTYQFPRDAHNAM 444
Query: 258 KYLNGKDVQSYEMKLGWGK 276
K L GK + E+++GW K
Sbjct: 445 KDLTGKKLLGRELRIGWAK 463
Score = 51 (23.0 bits), Expect = 3.5e-52, Sum P(4) = 3.5e-52
Identities = 25/131 (19%), Positives = 53/131 (40%)
Query: 677 DGEDLDGVPMDKVK-PARAATFIPSKWETVEEN-EDSAVTSSKWDDVEQSESKDDSNSKG 734
+ +D+DG+P++ VK I + ++ +++ + K D +E + K D K
Sbjct: 799 EDDDIDGIPINSVKNDENTKNKISMSTQQIDLYCKNNGLV--KCDTIEDTMDKIDQFKKC 856
Query: 735 TGLTSSRRGDLSSERIQGD---SGEDDSAAREEKKEANKSERSDRKKSPSPAAREEKKEA 791
S + L + ++ D S ED+ ++K + + S + E +
Sbjct: 857 LAQESEKEDKLLAHQLSKDILDSIEDEIETYKKKLSISSNNDSSFSQEKEILINEYRATL 916
Query: 792 NKSERSDRKKS 802
K+ S + S
Sbjct: 917 IKAAASQKISS 927
Score = 47 (21.6 bits), Expect = 9.2e-52, Sum P(4) = 9.2e-52
Identities = 30/151 (19%), Positives = 63/151 (41%)
Query: 658 DEDDIDGVPCTYNITSATMDGEDLDGVPMDKVK-PARAATFIPSKWETVEENEDSAVTSS 716
++DDIDG+P I S D + + M + K +T+E+ D +
Sbjct: 799 EDDDIDGIP----INSVKNDENTKNKISMSTQQIDLYCKNNGLVKCDTIEDTMDK-IDQF 853
Query: 717 KWDDVEQSESKDD--SNSKGTGLTSSRRGDLSS--ERIQGDSGEDDSAAREEKKEANKSE 772
K ++SE +D ++ + S ++ + +++ S D S ++E++ N+
Sbjct: 854 KKCLAQESEKEDKLLAHQLSKDILDSIEDEIETYKKKLSISSNNDSSFSQEKEILINEYR 913
Query: 773 RSDRKKSPSPAAREEKKE---ANKSERSDRK 800
+ K + S K++ N S+R+
Sbjct: 914 ATLIKAAASQKISSLKRDFEVGNNINNSNRQ 944
Score = 42 (19.8 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 24/134 (17%), Positives = 51/134 (38%)
Query: 440 GMPDELVEEEVESKTKGSLSNSQRHRLEDFLRNLTPERVKVAEAMVFCMEHSDAAEEICE 499
G+P V+ + +K K S+S Q ++ + +N + E + D ++ +
Sbjct: 805 GIPINSVKNDENTKNKISMSTQQ---IDLYCKNNGLVKCDTIE------DTMDKIDQFKK 855
Query: 500 CIMESLSNESTALHKKIGRLYL--VSDILHNCGIKISNASFYRRGFESRLFQIFTEMHIT 557
C+ + E L ++ + L + D + K+S +S F + E T
Sbjct: 856 CLAQESEKEDKLLAHQLSKDILDSIEDEIETYKKKLSISSNNDSSFSQEKEILINEYRAT 915
Query: 558 YVNLESRLKAEGLR 571
+ + K L+
Sbjct: 916 LIKAAASQKISSLK 929
Score = 38 (18.4 bits), Expect = 3.5e-52, Sum P(4) = 3.5e-52
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 84 TSEKGKLYKPQSRLQEDKDSSASKAEE 110
TS K Q + Q+ KD S SK ++
Sbjct: 59 TSNTSSQLKSQLQSQKRKDESDSKLKK 85
>DICTYBASE|DDB_G0293252 [details] [associations]
symbol:DDB_G0293252 "putative RNA binding protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
dictyBase:DDB_G0293252 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AAFI02000200 GO:GO:0006396 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 eggNOG:NOG314315 RefSeq:XP_629218.1
ProteinModelPortal:Q54C48 GeneID:8629100 KEGG:ddi:DDB_G0293252
InParanoid:Q54C48 OMA:FGKVENA Uniprot:Q54C48
Length = 691
Score = 213 (80.0 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 65/264 (24%), Positives = 119/264 (45%)
Query: 339 NQAYVKVVVPTDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIY 398
NQ + P +I ++ E+V R GP FE K+ +NPL+ FL + +SPA+ Y
Sbjct: 424 NQIPLPAPPPQSPQEQQIIDKLAEYVARTGPRFETFTFEKQRNNPLFSFL-KPRSPANDY 482
Query: 399 YRWKMYSILQGD--QPKEWRTNEFRMFDGGSVWRPPPMNLFTQGMPDELVEEEVESKTKG 456
Y+WK+++I D NE + + Q P + +++ +
Sbjct: 483 YKWKLWTIRNPDTHSSNNDTNNETQSPSNQQENQQQQQQQQPQQPPQQENQQQQQQINYP 542
Query: 457 S--LSNSQRHRLEDFLRNLTPERVKVAEAMVFCMEHSDAAEEICECIMESLSNESTALHK 514
S L+ ++ +D L LTP + V + M H++ + EI I+ + S +
Sbjct: 543 SSFLNENEVKEFKDILEKLTPSKPSVTNCKNWIMSHTENSLEIISIIVVNFQTISLTFAQ 602
Query: 515 KIGRLYLVSDILHNCGIKISNASFYRRGFESRLFQIFTEMHITYVNL-ESRLKAEGLRTR 573
K+ L++++D LHN K S+ + + +R + + I ES E +
Sbjct: 603 KLNILHVLNDCLHNSVTKRSSPNDWMSDDFARSIKDYLPFIIGSTGSGESPDNQE----K 658
Query: 574 VMQVFRAWEDWAVYPKDYLIKLQN 597
V++V W++ YPKD++ L++
Sbjct: 659 VLKVLSIWDNQKFYPKDFIESLRS 682
Score = 115 (45.5 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 35/126 (27%), Positives = 64/126 (50%)
Query: 151 EEREERHKYKGVLKGVYSEEAEPPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQ 210
+++ ++H+ + +G Y P YQ KG+ +P T ++ GN+NP+ TE+
Sbjct: 136 QQQHQQHQQQQQ-QGGYMGGNGPNQMAPHYQN--KGAGGQLEP-TKIVWAGNINPESTEE 191
Query: 211 QLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEM 270
++ +F ++G L +IKI+ P + C F+ F + +A LNG + +
Sbjct: 192 EVRHLFSQFGYLQAIKII-PN--------KQCAFITFADVNCAIQAQFNLNGTIFRGLPL 242
Query: 271 KLGWGK 276
KLG+GK
Sbjct: 243 KLGFGK 248
Score = 102 (41.0 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGE 254
T NL+LGN+N ++ + L +IF ++G + +I+I+ GR C FV F +
Sbjct: 275 TKNLWLGNVNSNVSYELLKQIFDQFGNVDTIRIL---------HGRGCAFVNFFTVESAA 325
Query: 255 RALKYLNGKDVQSYEMKLGWGK 276
A LNG V +K+ + K
Sbjct: 326 AARNGLNGTMVCGMPLKINFRK 347
>ASPGD|ASPL0000075677 [details] [associations]
symbol:AN4943 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000061 Pfam:PF01805 GO:GO:0003723 GO:GO:0006396
EMBL:BN001303 EMBL:AACD01000084 InterPro:IPR006569 SMART:SM00582
SUPFAM:SSF109905 PROSITE:PS51391 eggNOG:NOG307351 KO:K12842
OrthoDB:EOG4TQQKF RefSeq:XP_662547.1 ProteinModelPortal:Q5B3D7
EnsemblFungi:CADANIAT00005454 GeneID:2872744 KEGG:ani:AN4943.2
HOGENOM:HOG000197003 OMA:HAWRYRQ Uniprot:Q5B3D7
Length = 807
Score = 200 (75.5 bits), Expect = 7.0e-19, Sum P(2) = 7.0e-19
Identities = 73/308 (23%), Positives = 126/308 (40%)
Query: 175 SAIAIYQEETKGSFDSGDP----CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWP 230
SA +E +GS D+ + LYL +L P ++ + + + ++K + P
Sbjct: 143 SAFRASDDEDEGSADAKEAERAAAKPTLYLASLPPGTSQSVVKALIPTVLTVDNVKFLRP 202
Query: 231 RSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVXXXXXXXXXXXK 290
R V + E A ++ LGWG +
Sbjct: 203 SGQTATERKSVSAIVTLAS----ESAASDIDSSVSALQNRYLGWGYYLSISRHLSSAAIG 258
Query: 291 MLELTVPPPPSGLPFNAQPASKDK----HRIPKL---RPGEPLTREDLDRLDQILNQAYV 343
P LPF A+P + + +R P R G + V
Sbjct: 259 STVAIGPSSTGSLPFGAKPVAPELGGRLNRAPPPGLHRGGFAPPSSYGPSYGGSSSTLQV 318
Query: 344 KVVVPTDRTLLMLIHRMVEFVVREGPMFEAMIMNK-EISNP-LYRFLFENQSPAHIYYRW 401
+V P+D L LIH+ +E ++ GP FEA++M++ E+ + +L++ +SP +YYRW
Sbjct: 319 EVKAPSDLKQLRLIHKTLENLLNYGPEFEALLMSRPEVQKEEKWAWLWDARSPGGVYYRW 378
Query: 402 KMYSILQGDQPKEWR---TNEFRMFDGGSVWRPPPMNLFTQGMP-DELVEEEVESKTKGS 457
K++ I+ + K+ R N F +F+GG++W P F DELV +E +
Sbjct: 379 KLWDIITNSRSKDQRGHSQNPFPIFEGGAMWIPQDKLTFEYTTRLDELVSDEDYDSSDED 438
Query: 458 LSNSQRHR 465
+S+ + R
Sbjct: 439 ISDGEDDR 446
Score = 114 (45.2 bits), Expect = 7.0e-19, Sum P(2) = 7.0e-19
Identities = 52/195 (26%), Positives = 85/195 (43%)
Query: 510 TALHKKIGRLYLVSDILHNCGIK-ISNASFYRRGFESRL--FQIFTEMHITYVNLE-SRL 565
T+ K +G LYL+SDIL + + +A YR+ FES L ++F + +L RL
Sbjct: 565 TSSAKLVG-LYLISDILSSSATSGVRHAWRYRQLFESALKTHKVFEHLGRLEKDLSWGRL 623
Query: 566 KAEGLRTRVMQVFRAWEDWAVYPKDYLIKLQNVFLGLSDAVPLDANNGNEEDEDLDGAPL 625
+AE + + + WE W V+P+ Q F + + PL EE E +
Sbjct: 624 RAEKWKRSIGSLLHLWEGWCVFPQSS----QEHFFQVFEKPPLTEEELREEKEKAESERA 679
Query: 626 SDVDGEDLD---GVPLDGAALMK-----SLQRLPHSSSAPDE---D-DIDGVPCTYNITS 673
+ ++ V D +A + S + P S+ E D DIDG + +I
Sbjct: 680 AAAVSKNKSRWKAVDEDSSAAARFEPGGSSEGKPPSAEVHQEVAEDMDIDGAAMS-DIDG 738
Query: 674 ATMDGEDLDGVPMDK 688
M+ DL+ + D+
Sbjct: 739 EPMEDSDLEDIDEDE 753
Score = 69 (29.3 bits), Expect = 1.8e-13, Sum P(3) = 1.8e-13
Identities = 26/108 (24%), Positives = 49/108 (45%)
Query: 687 DKVKPARAATFIP---SKWETVEENEDSAVTSSKWDDVEQSESKDDSN------SKGTGL 737
+K + RAA + S+W+ V+E+ +A ++++ SE K S ++ +
Sbjct: 672 EKAESERAAAAVSKNKSRWKAVDEDSSAA---ARFEPGGSSEGKPPSAEVHQEVAEDMDI 728
Query: 738 TSSRRGDLSSERIQGDSGED---DSAAREEKKEANKSERSDRKKSPSP 782
+ D+ E ++ ED D REE +E +K + + KS P
Sbjct: 729 DGAAMSDIDGEPMEDSDLEDIDEDENPREEIEEEDKPKEQPQTKSEKP 776
Score = 58 (25.5 bits), Expect = 2.3e-12, Sum P(3) = 2.3e-12
Identities = 30/124 (24%), Positives = 47/124 (37%)
Query: 690 KPARAATFIPSKWETVEENEDSAVTS---SKWDDVEQSESKDDSNSKGTGLTSSRRGDLS 746
KP + + E E +A S S+W V++ S G S G
Sbjct: 659 KPPLTEEELREEKEKAESERAAAAVSKNKSRWKAVDEDSSAAARFEPG----GSSEGKPP 714
Query: 747 SERIQGDSGED---DSAAREE--KKEANKSERSDRKKSPSPAAREEKKEANKSERSDRKK 801
S + + ED D AA + + S+ D + +P REE +E +K + + K
Sbjct: 715 SAEVHQEVAEDMDIDGAAMSDIDGEPMEDSDLEDIDEDENP--REEIEEEDKPKEQPQTK 772
Query: 802 SPSP 805
S P
Sbjct: 773 SEKP 776
Score = 37 (18.1 bits), Expect = 1.8e-13, Sum P(3) = 1.8e-13
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 617 DEDLDGAPLSDVDGED 632
DED D + DGED
Sbjct: 429 DEDYDSSDEDISDGED 444
>UNIPROTKB|G4MV79 [details] [associations]
symbol:MGG_15600 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000061 Pfam:PF01805 GO:GO:0003723
GO:GO:0006396 EMBL:CM001232 InterPro:IPR006569 SUPFAM:SSF109905
PROSITE:PS51391 RefSeq:XP_003713901.1 EnsemblFungi:MGG_15600T0
GeneID:12987307 KEGG:mgr:MGG_15600 Uniprot:G4MV79
Length = 826
Score = 168 (64.2 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 44/159 (27%), Positives = 88/159 (55%)
Query: 301 SGLPFNAQPASKDKHRIPKLRPGE---PLTREDLDRLDQILNQA---YVKVVVPTDRTLL 354
S PF A+P S+ K R G P T D ++ +N++ +V V P D +L
Sbjct: 285 SSHPFGAKPVSQPKERSSYRGRGRGFAPPTSYDA-QVGSPVNRSGVMHVPVRPPKDIHML 343
Query: 355 MLIHRMVEFVVREGPMFEAMIMNK-EISNP-LYRFLFENQSPAHIYYRWKMYSILQGDQP 412
IH +VE ++ GP FEA++M++ ++ + ++++ +S ++YR++++ ++ G +
Sbjct: 344 RTIHMVVESILEHGPEFEALLMSRPDVQREEKWAWIWDARSEGGVWYRYRLWEVITGART 403
Query: 413 KEWRTNEFRMFDGGSVWRPP--PMNL-FTQGMPDELVEE 448
+ + +F+GGS W+ P P++ +T+G+ DE V +
Sbjct: 404 QRGKGKFVPLFEGGSAWKLPDQPLSYEYTEGV-DEFVSD 441
Score = 102 (41.0 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 52/189 (27%), Positives = 82/189 (43%)
Query: 508 ESTALHKKIGRLYLVSDILHNCGIK-ISNASFYRRGFESRLF--QIFTEMHITYVNLE-S 563
+ + K IG LY++SDIL + I +A YR+ FE+ L ++ + + +
Sbjct: 572 QDVSTSKLIG-LYVISDILSSSSTSGIRHAWRYRQHFEAALRNRKVCEGLGMVPEKMGWG 630
Query: 564 RLKAEGLRTRVMQVFRAWEDWAVYPKDYLIKLQNVFLGLSDAVP-LDANNGNEEDEDLDG 622
RL+AE + V V WE W V+P + Q F+ + P L +E ++ +
Sbjct: 631 RLRAEKWKRSVGLVLGHWEGWCVFPAES----QAFFVDSFENPPALALAQQQKEAKEAEE 686
Query: 623 APLSDVDGEDLDGVPLDGAALMKSLQRLPHSSSAPDEDDIDGVPCTYNITSATMD----- 677
A L + + G AL + + +SS E D+DG MD
Sbjct: 687 A-LGKKNKWKTVPKAVAGEALADNSGLVGNSSVLDAERDLDGEAYLEYTDDEDMDLEVLE 745
Query: 678 GEDLDGVPM 686
GED+DG PM
Sbjct: 746 GEDIDGEPM 754
Score = 86 (35.3 bits), Expect = 6.5e-12, Sum P(3) = 6.5e-12
Identities = 42/145 (28%), Positives = 68/145 (46%)
Query: 602 LSDAVPLDANNGNEEDEDL----DGAPLSDVDG-EDLDGV--PLDGAALMKSLQRLPHSS 654
+SD+ +++ + DE L +G P G E + V PL+ A L+ L RLP +
Sbjct: 439 VSDSEYNSSDDDDFYDEHLGKSGEGGPGVAASGNEQEENVLSPLEKAKLVHLLARLPTTL 498
Query: 655 SAPDEDDIDGVPCTYNITSATMDGEDLDGVPMDKV-KPARAATFIPS-KWETVEENEDSA 712
S + DI V T+ IT A+ +++ + + V KP ++ P K ++ +D+
Sbjct: 499 SKLRKGDIARVT-TFAITHASRGTDEITDLIVSNVEKPFAFSSANPDYKPNQIDRAQDTK 557
Query: 713 VTSSKWDDVEQSESKDDSNSKGTGL 737
S D SE +D S SK GL
Sbjct: 558 ALSLAPDSKAPSEPQDVSTSKLIGL 582
Score = 56 (24.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 22/90 (24%), Positives = 40/90 (44%)
Query: 616 EDEDLDGAPLSDVDGEDLDGVPL--DGAA---LMKSLQRLPHSSSAPDEDDIDGVPCTYN 670
+DED+D L ++GED+DG P+ +G A + + + +A GV +
Sbjct: 735 DDEDMD---LEVLEGEDIDGEPMISEGMAGLSMEEDVDAKTGGDAAGQPPGRSGVQEPHQ 791
Query: 671 ITSATMDGEDLDGVPMDKVKPARAATFIPS 700
+T + + G + ++ K RA S
Sbjct: 792 VTRS-VGGFQMSAASVNPKKRMRAMDMFAS 820
Score = 40 (19.1 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 638 LDGAALMKSLQRLPHSSSAPDEDDIDGVPC-TYNITSATMDGEDLD 682
LDG A ++ + +DIDG P + + +M+ ED+D
Sbjct: 725 LDGEAYLEYTDDEDMDLEVLEGEDIDGEPMISEGMAGLSME-EDVD 769
Score = 39 (18.8 bits), Expect = 6.5e-12, Sum P(3) = 6.5e-12
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 780 PSPAAREEKKEANKSERSDRKKS 802
P+ A +++KEA ++E + KK+
Sbjct: 670 PALALAQQQKEAKEAEEALGKKN 692
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 178 (67.7 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 42/140 (30%), Positives = 64/140 (45%)
Query: 174 PSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSD 233
P A+YQ + DP T +++G L+ +T+ +L IFG++G L +KI P
Sbjct: 238 PMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIP-P--- 293
Query: 234 EEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVXXXXXXXXXXXKMLE 293
G+ CGFV + N+ E AL LNG + ++L WG+S
Sbjct: 294 -----GKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNKQSDQAQWNGGGYY 348
Query: 294 LTVPPPPSGLPFNAQPASKD 313
P P G + AQP ++D
Sbjct: 349 GYPPQPQGGYGYAAQPPTQD 368
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 124 (48.7 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G LN E+ L ++F +YG ++ + ++ D E R R GFV F N D + A+
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVV---KDRETKRSRGFGFVTFENPDDAKDAM 63
Query: 258 KYLNGKDVQSYEMKLGW-GKS 277
+NGK V ++++ GKS
Sbjct: 64 MAMNGKAVDGRQIRVDQAGKS 84
Score = 48 (22.0 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 726 SKDDSNSKGTGLTSSRRGDLSSERIQGDSGE 756
S+ D+ S G G +S R SS R QG G+
Sbjct: 119 SRFDNRSGGYGGSSGSRDYYSSGRSQGSYGD 149
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 169 (64.5 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 36/100 (36%), Positives = 55/100 (55%)
Query: 178 AIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKA 237
A YQ T+G+ DP T +++G ++ +TE L +FG++G L +KI P
Sbjct: 261 ASYQN-TQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKI--PA------ 311
Query: 238 RGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKS 277
G+ CGFV + NR E+AL LNG + ++L WG+S
Sbjct: 312 -GKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRS 350
>POMBASE|SPBC11C11.01 [details] [associations]
symbol:SPBC11C11.01 "U2-associated protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005686 "U2
snRNP" evidence=ISS] [GO:0005829 "cytosol" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC11C11.01 GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005686
GO:GO:0045292 InterPro:IPR006569 SMART:SM00582 PROSITE:PS51391
PIR:T39711 RefSeq:NP_596390.2 GeneID:2539748 eggNOG:KOG0151
OrthoDB:EOG4TQQKF NextBio:20800899 Uniprot:Q10200
Length = 466
Score = 148 (57.2 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 52/227 (22%), Positives = 108/227 (47%)
Query: 451 ESKTKGSLSNSQRHRLEDFLRNLTPERVKVAEAMVFCMEHSDAAEEICECIMESLSNES- 509
ES+ K L+ R +LE ++ L E+ + + F +EH + EI + ++ N+
Sbjct: 202 ESQDKDKLTKLDRAKLEWLIQGLNCEKGSIGNLLCFAVEHVNNHVEITDAFLKEFFNDQP 261
Query: 510 ---TALH----------KKIGRLYLVSDILHNCGIKISNASF-YRRGFESRLFQIFTEMH 555
T ++ KK+ +YL++DIL N GI ++ + YR FE + ++ +++
Sbjct: 262 TDDTKVYDDDYINERGEKKLSLIYLMNDILFN-GISGTSLVWRYRFSFEPHVERLLDDLY 320
Query: 556 ITYVNLESRLKAEGLRTRVMQVFRAWEDWAVYPKDYLIKLQNVFLGLSDAVPLDANNGNE 615
+ L R+K + +V++V W+ W + ++ L + F G + P N+
Sbjct: 321 LFSKRLGGRIKEDIFCKKVVKVIEVWKTWIAFQEETLERAWRNFSGNTPQSP-QINSAAL 379
Query: 616 EDEDLDG-APLSDV-----DGEDLDGVPLDGAALM--KSLQRLPHSS 654
+ E + +S+ D E+ +G+P+D L+ + + ++P S+
Sbjct: 380 KVETKNSWTAISEETEGLQDDEEYNGIPVDVNELLNVEFISQIPMST 426
Score = 69 (29.3 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 28/121 (23%), Positives = 48/121 (39%)
Query: 144 EELKMIQEEREERHKYKGVLKG--VYSEEAEPPSAIAIYQE-ETKGSFDSGDPCTTNLYL 200
E K +Q + ER K K EE A +E + D + +++
Sbjct: 53 ERKKYLQNQSYERRKQKNEHGNNLTLQEELLRHEAYEKNEEIANENDVDQVNLMKYFVHM 112
Query: 201 GNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYL 260
N++P T L E +Y + ++ I D +K G F + D E+A++YL
Sbjct: 113 DNISPVTTNGSLKESLRKYSSIIAVNIFSETGDLKK------GIAIFQDLSDAEQAVQYL 166
Query: 261 N 261
+
Sbjct: 167 S 167
>DICTYBASE|DDB_G0268004 [details] [associations]
symbol:snrp70 "U1 small nuclear ribonucleoprotein 70
kDa protein" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0005685
"U1 snRNP" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0268004 GenomeReviews:CM000150_GR
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AAFI02000003 GO:GO:0005681
GO:GO:0003723 GO:GO:0043484 GO:GO:0000398 eggNOG:COG0724
HSSP:Q14103 GO:GO:0005685 KO:K11093 InterPro:IPR022023 Pfam:PF12220
RefSeq:XP_647483.1 ProteinModelPortal:Q55FQ0 STRING:Q55FQ0
EnsemblProtists:DDB0233134 GeneID:8616290 KEGG:ddi:DDB_G0268004
OMA:YLMEPAP Uniprot:Q55FQ0
Length = 459
Score = 125 (49.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 38/130 (29%), Positives = 68/130 (52%)
Query: 137 SNLEMFKEE-LKMIQEEREERHKYKGVLKGVYSEEAEPPSAIAIYQEETKGSFDSGDPCT 195
SN E FK+E ++ ++E+RE++ K K SE E S + S +GDP
Sbjct: 46 SNEEPFKKEHIENLEEKREKKRKLK------ISENDERISKSLKAWDPYSNSETTGDPYK 99
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
T +++ ++ K T+Q+L FG++GP+ S+ ++ ++ EK G F+ F +D +
Sbjct: 100 T-IFVSRISYKTTQQKLEFEFGQFGPIKSLFLVKDSNNPEKHTGY--AFIEFERERDMKA 156
Query: 256 ALKYLNGKDV 265
A K +G +
Sbjct: 157 AYKQADGMKI 166
Score = 85 (35.0 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 24/83 (28%), Positives = 39/83 (46%)
Query: 719 DDVEQSESKDDSNSKGTGLTSSRR--GDLSSERIQGDSGEDDSAAREEKKEANKSERSDR 776
D ++S+ D +G G R G+ ER Q D G D R ++ + +S+R DR
Sbjct: 274 DRGDRSDRSDRDRERGRGDRDHRGSGGERERERDQRDRGGDRGGDRGDRSDRGRSDRGDR 333
Query: 777 KKSPSPAAREEKKEANKSERSDR 799
S R+++ E + +R DR
Sbjct: 334 GDR-SDRGRDDR-ERGRDDRGDR 354
Score = 79 (32.9 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 29/107 (27%), Positives = 51/107 (47%)
Query: 703 ETVEENEDSAVTSSKWDDVEQSESKDDSN--SKGTGLTSSRRGDLSSERIQGDSGE-DDS 759
E +E E + K D S + + SN S G+G + RGD +R +GD G+ D
Sbjct: 223 EKEKEKEKERMEKMKKRDGGLSSNGNRSNGISSGSGGSGGDRGD-RGDRDRGDRGDRSDR 281
Query: 760 AARE-EKKEANKSERS---DRKKSPSPAAREEKKEANKSERSDRKKS 802
+ R+ E+ ++ R +R++ R + ++ +RSDR +S
Sbjct: 282 SDRDRERGRGDRDHRGSGGERERERDQRDRGGDRGGDRGDRSDRGRS 328
Score = 75 (31.5 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 22/87 (25%), Positives = 41/87 (47%)
Query: 720 DVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGED--DSAAREEKKEANKSERSDRK 777
D ++ + D + +G+G R D +R GD G D D + R ++ +RSDR
Sbjct: 283 DRDRERGRGDRDHRGSGGERERERD-QRDR-GGDRGGDRGDRSDRGRSDRGDRGDRSDRG 340
Query: 778 KSPSPAAREEKKEANKSER---SDRKK 801
+ R+++ + + +R SDR +
Sbjct: 341 RDDRERGRDDRGDRGRDDRRGGSDRDR 367
Score = 62 (26.9 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 734 GTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKKSPSPAAREEKKEANK 793
G GL ++R G + Q SG + S +RE++KE K + ++++ R+ +N
Sbjct: 190 GGGLGNTRAGGVDVN--QTFSGREMSESREKEKEREKEKEKEKERMEKMKKRDGGLSSN- 246
Query: 794 SERSDRKKSPS 804
RS+ S S
Sbjct: 247 GNRSNGISSGS 257
Score = 59 (25.8 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 21/84 (25%), Positives = 40/84 (47%)
Query: 723 QSESKDDSNSKG--TGLTSSR-RGDLSSERIQGDSGEDD-SAAREEKKEANKSER---SD 775
+ + +D +G G S R R D + D G DD R+++ + + +R SD
Sbjct: 305 ERDQRDRGGDRGGDRGDRSDRGRSDRGDRGDRSDRGRDDRERGRDDRGDRGRDDRRGGSD 364
Query: 776 RKKSPSPAAREEKKEANKSERSDR 799
R + +R+++ ++ +RSDR
Sbjct: 365 RDRDRG--SRDDR--GDRDDRSDR 384
Score = 58 (25.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 20/80 (25%), Positives = 36/80 (45%)
Query: 719 DDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSER---SD 775
DD E+ +DD +G RRG +R +G DD R+++ + + +R SD
Sbjct: 342 DDRERG--RDDRGDRGR---DDRRGGSDRDRDRGS--RDDRGDRDDRSDRGRDDRRGGSD 394
Query: 776 RKKSPSPAAREEKKEANKSE 795
R R+++ + S+
Sbjct: 395 RDHRIDERRRDQRDYGSISD 414
Score = 58 (25.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 19/92 (20%), Positives = 34/92 (36%)
Query: 708 NEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKE 767
N + ++S + D + G S R D ER +GD S E++
Sbjct: 248 NRSNGISSGSGGSGGDRGDRGDRDRGDRG-DRSDRSDRDRERGRGDRDHRGSGGERERER 306
Query: 768 ANKSERSDRKKSPSPAAREEKKEANKSERSDR 799
+ DR R ++ +++ +R DR
Sbjct: 307 DQRDRGGDR--GGDRGDRSDRGRSDRGDRGDR 336
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 137 (53.3 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 29/81 (35%), Positives = 48/81 (59%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G LN + TE+ L ++F +YG +A + ++ D E R R GFV F N +D + A+
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVV---KDRESKRSRGFGFVTFENPEDAKDAM 64
Query: 258 KYLNGKDVQSYEMKLGW-GKS 277
+NGK V ++++ GKS
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKS 85
>MGI|MGI:106417 [details] [associations]
symbol:Cherp "calcium homeostasis endoplasmic reticulum
protein" species:10090 "Mus musculus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0006874 "cellular calcium ion homeostasis" evidence=ISO]
[GO:0008285 "negative regulation of cell proliferation"
evidence=ISO] [GO:0033017 "sarcoplasmic reticulum membrane"
evidence=ISO] [GO:0044325 "ion channel binding" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
[GO:0051209 "release of sequestered calcium ion into cytosol"
evidence=ISO] [GO:0051533 "positive regulation of NFAT protein
import into nucleus" evidence=ISO] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 MGI:MGI:106417
GO:GO:0005783 GO:GO:0048471 GO:GO:0008285 GO:GO:0051209
GO:GO:0003723 GO:GO:0006396 GO:GO:0051533 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 HSSP:Q8CH02 CTD:10523
eggNOG:NOG267701 HOGENOM:HOG000010294 HOVERGEN:HBG052716 KO:K12841
OrthoDB:EOG4BCDMG InterPro:IPR006903 InterPro:IPR006569
Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
EMBL:AF536541 EMBL:BC020488 IPI:IPI00229604 RefSeq:NP_613051.3
UniGene:Mm.30136 ProteinModelPortal:Q8CGZ0 SMR:Q8CGZ0 IntAct:Q8CGZ0
STRING:Q8CGZ0 PhosphoSite:Q8CGZ0 PaxDb:Q8CGZ0 PRIDE:Q8CGZ0
GeneID:27967 KEGG:mmu:27967 UCSC:uc009mga.1 InParanoid:Q8CGZ0
NextBio:306460 Bgee:Q8CGZ0 CleanEx:MM_CHERP Genevestigator:Q8CGZ0
Uniprot:Q8CGZ0
Length = 936
Score = 110 (43.8 bits), Expect = 5.6e-08, Sum P(3) = 5.6e-08
Identities = 38/126 (30%), Positives = 62/126 (49%)
Query: 348 PTDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSIL 407
P D+ L +I ++ +FV R GP FE M M K+ NP + FLF + + YY+ K+ ++
Sbjct: 7 PDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGEF--YSYYKCKL-ALE 63
Query: 408 QGDQPKEWRTNEFRMFDG-GSVWRPP--PMNLFT--QGMP--DELVEEEVESKTKGSLSN 460
Q + + E + +PP P T QG P DEL+++ ++ SL
Sbjct: 64 QQQLICKQQAPELEPTSAMPPLPQPPLAPTASLTPAQGTPSMDELIQQ-----SQWSLQQ 118
Query: 461 SQRHRL 466
++H L
Sbjct: 119 QEQHLL 124
Score = 83 (34.3 bits), Expect = 5.6e-08, Sum P(3) = 5.6e-08
Identities = 25/84 (29%), Positives = 38/84 (45%)
Query: 726 SKDDSNSKGTGLTSSRRGDLSSERIQGDS-GEDDSAAREEKKEANKSE---RSDRKKSPS 781
S+ S SK G +SSR SS+ + S S +R + ++S RS R +S S
Sbjct: 746 SRSRSRSKSRGRSSSRSSSRSSKSSRSSSRSHSRSRSRSSSRSRSRSRSRSRSSRSRSRS 805
Query: 782 PAAREEKKEANKSERSDRKKSPSP 805
+ K + R R +SP+P
Sbjct: 806 RSRSRSKSYSPGRRRRSRSRSPTP 829
Score = 66 (28.3 bits), Expect = 5.6e-08, Sum P(3) = 5.6e-08
Identities = 26/110 (23%), Positives = 53/110 (48%)
Query: 498 CECIMESLSNESTA--LH--KKIGRLYLVSDILHNCGIKISNASFYRRGFESRLFQIFTE 553
CE + L N TA H ++ +YL++D+LH+C K + R + L ++
Sbjct: 190 CELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQRKQA------RELLAALQKVVVP 243
Query: 554 MHIT-YVNLESRLKAEGLRTRVMQVFRAWEDWAVYPKDYLIKLQNVFLGL 602
++ T ++ +E E + ++ ++ + WE + + +LQ+ LGL
Sbjct: 244 IYCTSFLAVE-----EDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGL 288
Score = 65 (27.9 bits), Expect = 3.5e-06, Sum P(3) = 3.5e-06
Identities = 20/83 (24%), Positives = 34/83 (40%)
Query: 700 SKWETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDS 759
S+ + S+ +SS+ +S S+ S S+ + SR S R S
Sbjct: 748 SRSRSKSRGRSSSRSSSRSSKSSRSSSRSHSRSRSRSSSRSRSRSRSRSRSSRSRSRSRS 807
Query: 760 AAREEKKEANKSERSDRKKSPSP 782
+R + + RS R +SP+P
Sbjct: 808 RSRSKSYSPGRRRRS-RSRSPTP 829
Score = 45 (20.9 bits), Expect = 0.00033, Sum P(3) = 0.00033
Identities = 15/63 (23%), Positives = 26/63 (41%)
Query: 746 SSERIQGDSGEDDSAARE---EKKEANKSERSDRKKS-PSPAAREEKKEANKSERSDRKK 801
S +R + G + + E K A + + +++ S PS + K S RS +
Sbjct: 707 SHDRPRNSEGWEQNGLYEFFRAKMRARRRKGQEKRNSGPSRSRSRSKSRGRSSSRSSSRS 766
Query: 802 SPS 804
S S
Sbjct: 767 SKS 769
>DICTYBASE|DDB_G0291966 [details] [associations]
symbol:DDB_G0291966 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0291966
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000186 Gene3D:4.10.60.10 OMA:SKISVEW
eggNOG:NOG77895 RefSeq:XP_001134500.1 ProteinModelPortal:Q1ZXB1
EnsemblProtists:DDB0233327 GeneID:8628419 KEGG:ddi:DDB_G0291966
InParanoid:Q1ZXB1 ProtClustDB:CLSZ2846728 Uniprot:Q1ZXB1
Length = 312
Score = 119 (46.9 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 26/80 (32%), Positives = 45/80 (56%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
+LY+G L+ + T++ L + F +YG + R+D +K GR FV + R+D + A
Sbjct: 2 SLYIGRLSVETTQKNLNDHFSKYGTIT-------RNDVKKTNGRCYAFVEYKERRDADDA 54
Query: 257 LKYLNGKDVQSYEMKLGWGK 276
LK LNG + + ++ + W K
Sbjct: 55 LKALNGTTLLNSKISVEWAK 74
Score = 81 (33.6 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 25/83 (30%), Positives = 42/83 (50%)
Query: 723 QSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKKSPSP 782
+ S+D S S G G S R D S +R + D D S + +++K+ + S +R +
Sbjct: 226 RDRSRDRSRSNGGGSRYSSRRDRSRDRSR-DRSRDRSRSLKKEKKRDSSLSKERIAAGDA 284
Query: 783 AAREEKKEANKSERS-DRKKSPS 804
A+ + AN + RS +R +S S
Sbjct: 285 ASADSGNNANGNGRSRERSRSRS 307
Score = 64 (27.6 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 23/87 (26%), Positives = 38/87 (43%)
Query: 720 DVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSERS-DRKK 778
D + S+D ++ T SR D S +R + D G +++ N +RS DR +
Sbjct: 178 DRSRDRSRDARRNRDTSRDRSR--DRSRDRSR-DGGNIIRDTSRDRRRNNSRDRSRDRSR 234
Query: 779 SPSPAAREEKKEANKSERS-DRKKSPS 804
S +R + +RS DR + S
Sbjct: 235 SNGGGSRYSSRRDRSRDRSRDRSRDRS 261
Score = 60 (26.2 bits), Expect = 8.1e-06, Sum P(2) = 8.1e-06
Identities = 18/83 (21%), Positives = 34/83 (40%)
Query: 723 QSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKS-ERSDRKKSPS 781
+ S+D S S+ R S + D D S R + ++S +R DR++
Sbjct: 102 KKRSRDRSLSRSHSRDRRSRRYRSPSWDRRDRSRDRSRDRSRDRSRDRSRDRRDRRRDRR 161
Query: 782 PAAREEKKEANKSERSDRKKSPS 804
+R+ ++ + DR + S
Sbjct: 162 DRSRDRSRDGRRERSRDRSRDRS 184
Score = 60 (26.2 bits), Expect = 8.1e-06, Sum P(2) = 8.1e-06
Identities = 20/109 (18%), Positives = 42/109 (38%)
Query: 699 PSKWETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQG---DSG 755
PS W+ + + D + S+ ++S + D + R D ER + D
Sbjct: 126 PS-WDRRDRSRDRSRDRSRDRSRDRSRDRRDRRRDRRDRSRDRSRDGRRERSRDRSRDRS 184
Query: 756 EDDSAAREEKKEANKSERSDRKKSPSPAAREEKKEANKSERSDRKKSPS 804
D R+ ++ ++ DR + R+ ++ ++ DR + S
Sbjct: 185 RDARRNRDTSRDRSRDRSRDRSRDGGNIIRDTSRDRRRNNSRDRSRDRS 233
Score = 59 (25.8 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 21/74 (28%), Positives = 35/74 (47%)
Query: 720 DVEQSESKDDSNSKGTGL--TS-SRRGDLSSERIQGDSGEDDSAAREEKKEANKSERS-D 775
D + S+D S G + TS RR + S +R + S + +R + +RS D
Sbjct: 196 DRSRDRSRDRSRDGGNIIRDTSRDRRRNNSRDRSRDRSRSNGGGSRYSSRRDRSRDRSRD 255
Query: 776 RKKSPSPAAREEKK 789
R + S + ++EKK
Sbjct: 256 RSRDRSRSLKKEKK 269
Score = 58 (25.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 720 DVEQSESKDDSNSKGTGLTSSRRGD--LSSERIQGDSGEDDSAAREEKKEANKSERS-DR 776
D + S+D S + L ++ D LS ERI +G D+A+ + AN + RS +R
Sbjct: 247 DRSRDRSRDRSRDRSRSLKKEKKRDSSLSKERIA--AG--DAASADSGNNANGNGRSRER 302
Query: 777 KKSPS 781
+S S
Sbjct: 303 SRSRS 307
Score = 57 (25.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 753 DSGEDDSAAREEKKEANKSERSDRKKSPSPAAREEKKEANKSERSDRKKSPS 804
+ G+ S R + ++ RS R +SPS R+ ++ ++ DR + S
Sbjct: 99 NGGKKRSRDRSLSRSHSRDRRSRRYRSPSWDRRDRSRDRSRDRSRDRSRDRS 150
>RGD|1305279 [details] [associations]
symbol:Cherp "calcium homeostasis endoplasmic reticulum protein"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006396
"RNA processing" evidence=IEA] [GO:0006874 "cellular calcium ion
homeostasis" evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0033017 "sarcoplasmic reticulum
membrane" evidence=IDA] [GO:0044325 "ion channel binding"
evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO] [GO:0051209 "release of sequestered calcium ion into
cytosol" evidence=ISO] [GO:0051533 "positive regulation of NFAT
protein import into nucleus" evidence=ISO] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 RGD:1305279
GO:GO:0048471 GO:GO:0008285 GO:GO:0051209 GO:GO:0003723
GO:GO:0006396 GO:GO:0051533 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 GO:GO:0033017 OrthoDB:EOG4BCDMG InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SUPFAM:SSF109905 PROSITE:PS51391
GeneTree:ENSGT00600000084415 IPI:IPI00362613
ProteinModelPortal:D3ZAX5 PRIDE:D3ZAX5 Ensembl:ENSRNOT00000017424
UCSC:RGD:1305279 Uniprot:D3ZAX5
Length = 946
Score = 110 (43.8 bits), Expect = 5.8e-08, Sum P(3) = 5.8e-08
Identities = 38/126 (30%), Positives = 62/126 (49%)
Query: 348 PTDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSIL 407
P D+ L +I ++ +FV R GP FE M M K+ NP + FLF + + YY+ K+ ++
Sbjct: 7 PDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGEF--YSYYKCKL-ALE 63
Query: 408 QGDQPKEWRTNEFRMFDG-GSVWRPP--PMNLFT--QGMP--DELVEEEVESKTKGSLSN 460
Q + + E + +PP P T QG P DEL+++ ++ SL
Sbjct: 64 QQQLICKQQAPELEPTSAMPPLPQPPLAPTASLTPAQGTPSMDELIQQ-----SQWSLQQ 118
Query: 461 SQRHRL 466
++H L
Sbjct: 119 QEQHLL 124
Score = 84 (34.6 bits), Expect = 5.8e-08, Sum P(3) = 5.8e-08
Identities = 25/84 (29%), Positives = 38/84 (45%)
Query: 726 SKDDSNSKGTGLTSSRRGDLSSERIQGDS-GEDDSAAREEKKEANKSE---RSDRKKSPS 781
S+ S SK G +SSR SS+ + S S +R + ++S RS R +S S
Sbjct: 756 SRSHSRSKSRGRSSSRSSSRSSKSSRSSSRSRSRSRSRSSSRSRSRSRSRSRSSRSRSRS 815
Query: 782 PAAREEKKEANKSERSDRKKSPSP 805
+ K + R R +SP+P
Sbjct: 816 RSRSRSKSYSPGRRRRSRSRSPTP 839
Score = 65 (27.9 bits), Expect = 5.8e-08, Sum P(3) = 5.8e-08
Identities = 23/110 (20%), Positives = 50/110 (45%)
Query: 498 CECIMESLSNESTA--LH--KKIGRLYLVSDILHNCGIKISNASFYRRGFESRLFQIFTE 553
CE + L N TA H ++ +YL++D+LH+ + + + + ++R +
Sbjct: 190 CELMAGHLRNRITADGAHFELRLHLIYLINDVLHHWALTRGRSLPHSQRKQARELLAALQ 249
Query: 554 MHITYVNLESRLKAE-GLRTRVMQVFRAWEDWAVYPKDYLIKLQNVFLGL 602
+ + S L E + ++ ++ + WE + + +LQ+ LGL
Sbjct: 250 KVVVPIYCTSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGL 299
Score = 64 (27.6 bits), Expect = 5.7e-06, Sum P(3) = 5.7e-06
Identities = 20/85 (23%), Positives = 34/85 (40%)
Query: 699 PSKWETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDD 758
PS+ + ++ + + S + S S S S+ +SSR S R +
Sbjct: 755 PSRSHSRSKSRGRSSSRSSSRSSKSSRSSSRSRSRSRSRSSSRSRSRSRSRSRSSRSRSR 814
Query: 759 SAAREEKKEANKSERS-DRKKSPSP 782
S +R K + R R +SP+P
Sbjct: 815 SRSRSRSKSYSPGRRRRSRSRSPTP 839
Score = 54 (24.1 bits), Expect = 5.6e-05, Sum P(3) = 5.6e-05
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 740 SRRGDLSSERIQGDS---GEDDSAAREEKKEANKSERSDRKKSPSPAAREEKKEANKSER 796
+RR +R G S S R + +++S +S R S S +R + +++S
Sbjct: 742 ARRRKGQEKRNSGPSRSHSRSKSRGRSSSRSSSRSSKSSRSSSRS-RSRSRSRSSSRSRS 800
Query: 797 SDRKKSPS 804
R +S S
Sbjct: 801 RSRSRSRS 808
Score = 44 (20.5 bits), Expect = 0.00054, Sum P(3) = 0.00054
Identities = 15/63 (23%), Positives = 26/63 (41%)
Query: 746 SSERIQGDSGEDDSAARE---EKKEANKSERSDRKKS-PSPAAREEKKEANKSERSDRKK 801
S +R + G + + E K A + + +++ S PS + K S RS +
Sbjct: 717 SHDRPRNSEGWEQNGLYEFFRAKMRARRRKGQEKRNSGPSRSHSRSKSRGRSSSRSSSRS 776
Query: 802 SPS 804
S S
Sbjct: 777 SKS 779
>UNIPROTKB|F1NDZ9 [details] [associations]
symbol:CHERP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0044325 "ion channel binding"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0051209 "release of sequestered calcium ion into
cytosol" evidence=IEA] [GO:0051533 "positive regulation of NFAT
protein import into nucleus" evidence=IEA] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 GO:GO:0048471
GO:GO:0008285 GO:GO:0051209 GO:GO:0003723 GO:GO:0006396
GO:GO:0051533 Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
SUPFAM:SSF109905 PROSITE:PS51391 GeneTree:ENSGT00600000084415
OMA:FEGPWNS EMBL:AADN02061998 IPI:IPI00585527
Ensembl:ENSGALT00000006060 ArrayExpress:F1NDZ9 Uniprot:F1NDZ9
Length = 905
Score = 108 (43.1 bits), Expect = 8.1e-08, Sum P(3) = 8.1e-08
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 348 PTDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKM 403
P D+ L +I ++ +FV R GP FE M M K+ NP + FLF + YY++K+
Sbjct: 7 PDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKENPKFSFLFGGDF--YGYYKYKL 60
Score = 76 (31.8 bits), Expect = 8.1e-08, Sum P(3) = 8.1e-08
Identities = 25/100 (25%), Positives = 46/100 (46%)
Query: 706 EENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEK 765
+E +S + S+ +S+S+ S+S+ +S G S R + S S +R +
Sbjct: 717 QEKRNSGPSRSR----SRSKSRGRSSSRSNSRSSKSSGSYSRSRSRSCS-RSRSYSRSQS 771
Query: 766 KEANKSERSDRKKSPSPAAREEKKEANKSERSDRKKSPSP 805
+ ++S RS +S S + K + R R +SP+P
Sbjct: 772 RSRSRS-RSSHSRSRSRSRSRSKSYSPGRRRRSRSRSPTP 810
Score = 73 (30.8 bits), Expect = 8.1e-08, Sum P(3) = 8.1e-08
Identities = 31/142 (21%), Positives = 65/142 (45%)
Query: 466 LEDFLRNLTPERVKVAEAMVFCMEHSDAAEEICECIMESLSNESTA--LH--KKIGRLYL 521
L+ + T + + + +F S A CE + L N TA H ++ +YL
Sbjct: 160 LQPIIDTCTKDAISAGKNWMFSNAKSPAH---CELMAGHLRNRITAEGAHFELRLHLIYL 216
Query: 522 VSDILHNCGIKISNASFYRRGFESRLFQIFTEMHIT-YVNLESRLKAEGLRTRVMQVFRA 580
++D+LH+C K + R + L ++ ++ T ++ +E E + ++ ++ +
Sbjct: 217 INDVLHHCQRKQA------RDLLAALQKVVVPIYCTSFLAVE-----EDKQQKIARLLQL 265
Query: 581 WEDWAVYPKDYLIKLQNVFLGL 602
WE + + + +LQ+ LGL
Sbjct: 266 WEKNGYFDESIIQQLQSPALGL 287
Score = 46 (21.3 bits), Expect = 7.8e-05, Sum P(3) = 7.8e-05
Identities = 15/63 (23%), Positives = 27/63 (42%)
Query: 746 SSERIQGDSGEDDSAARE---EKKEANKSERSDRKKS-PSPAAREEKKEANKSERSDRKK 801
S +R + G + + E K A + + +++ S PS + K S RS+ +
Sbjct: 686 SHDRPRNSEGWEQNGLYEFFRAKMRARRRKGQEKRNSGPSRSRSRSKSRGRSSSRSNSRS 745
Query: 802 SPS 804
S S
Sbjct: 746 SKS 748
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 154 (59.3 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 32/98 (32%), Positives = 49/98 (50%)
Query: 180 YQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARG 239
YQ G DP T +++G L+ +T+ L +F +YG + +KI P G
Sbjct: 245 YQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKI--PA-------G 295
Query: 240 RNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKS 277
+ CGFV F + E AL+ LNG + ++L WG+S
Sbjct: 296 KRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRS 333
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 160 (61.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 35/100 (35%), Positives = 52/100 (52%)
Query: 178 AIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKA 237
A YQ +S DP T +++G L+P + E+ L ++F YG L +KI+
Sbjct: 265 ATYQNPQATQGES-DPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIV--------- 314
Query: 238 RGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKS 277
G+ CGFV F R E+AL LNG + ++L WG+S
Sbjct: 315 AGKRCGFVQFGTRASAEQALSSLNGTQLGGQSIRLSWGRS 354
Score = 38 (18.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 69 WVKAGTYDAGRRREDTSE 86
W G AG RR+D++E
Sbjct: 161 WASLG---AGERRDDSAE 175
>TAIR|locus:2014340 [details] [associations]
symbol:UBP1A "oligouridylate-binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006007 "glucose catabolic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005886 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 IPI:IPI00516341
RefSeq:NP_849806.1 UniGene:At.23098 ProteinModelPortal:F4HV67
SMR:F4HV67 PRIDE:F4HV67 EnsemblPlants:AT1G54080.2 GeneID:841846
KEGG:ath:AT1G54080 OMA:YEHRHAT PhylomeDB:F4HV67 Uniprot:F4HV67
Length = 430
Score = 153 (58.9 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 44/165 (26%), Positives = 81/165 (49%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASI----KIMWPRSDEEKARGRNCGFVAFMNRKD 252
N+++G+L+P++T+ L + F + +S ++MW D++ R R GFV+F N++D
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMW---DQKTGRSRGFGFVSFRNQQD 205
Query: 253 GERALKYLNGKDVQSYEMKLGWG-KSVXXXXXXXXXXXK-MLELTVPPPPSGLPFNAQPA 310
+ A+ +NGK V S +++ W K K ++ELT G + + A
Sbjct: 206 AQTAINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDA 265
Query: 311 SKDKHRIPKLRPGE--P-LTREDLDRLDQILNQAYVKVV-VPTDR 351
++ + + G P +T+ DL RL L ++ V V D+
Sbjct: 266 PENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDK 310
Score = 140 (54.3 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 38/135 (28%), Positives = 70/135 (51%)
Query: 146 LKMIQEEREERHKYKGVLKGVYSEEAE--PPSAIAIYQEET--KGSFDSG-DPCTT-NLY 199
+K Q++++++H+ + + + + P +A Q E G+ G DP T ++Y
Sbjct: 7 IKQQQQQQQQQHQQAMIQQAMMQQHPSLYHPGVMAPPQMEPLPSGNLPPGFDPTTCRSVY 66
Query: 200 LGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKY 259
GN++ ++TE L EIF GP+ S K++ R D+ + GFV + +R+ A+
Sbjct: 67 AGNIHTQVTEILLQEIFASTGPIESCKLI--RKDKS-----SYGFVHYFDRRCASMAIMT 119
Query: 260 LNGKDVQSYEMKLGW 274
LNG+ + MK+ W
Sbjct: 120 LNGRHIFGQPMKVNW 134
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 152 (58.6 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 30/94 (31%), Positives = 54/94 (57%)
Query: 184 TKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCG 243
T GS GD T +++G L+ ++T+++L + F ++G + S+KI P G+ CG
Sbjct: 283 THGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKI--PA-------GKGCG 333
Query: 244 FVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKS 277
FV F +R + A++ L+G + ++L WG+S
Sbjct: 334 FVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRS 367
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 126 (49.4 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 25/95 (26%), Positives = 56/95 (58%)
Query: 179 IYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKAR 238
I +++ + F+ TN+Y+ N++P++ +++ ++F ++G + S + R E K+R
Sbjct: 206 ISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLS--RDSEGKSR 263
Query: 239 GRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273
G GFV F + + A++ +N K+V+S ++ +G
Sbjct: 264 G--FGFVNFSTHESAQAAVEEMNDKEVRSQKLYVG 296
Score = 113 (44.8 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 26/87 (29%), Positives = 44/87 (50%)
Query: 190 SGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMN 249
+ P + +LY+G L+P +TE L E+F G +ASI++ D R +V + +
Sbjct: 36 TSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVC---RDAVTRRSLGYAYVNYND 92
Query: 250 RKDGERALKYLNGKDVQSYEMKLGWGK 276
GERAL LN ++ ++ W +
Sbjct: 93 TAHGERALDELNYTLIKGKPCRIMWSQ 119
Score = 78 (32.5 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 743 GDLSSERIQGDSGEDDSAARE-EKKE-ANKSERSDRKKSPSPAAREEKKEANKSERSDRK 800
G ++S ++ D+ ++A E E KE ANK + PAA E++KE K +
Sbjct: 350 GTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAAEEKEKEEKKEAEQKPE 409
Query: 801 KSP 803
K P
Sbjct: 410 KKP 412
Score = 57 (25.1 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 756 EDDSAAREEKKEA-NKSERSDRKKSPSPAAREEKKEANKSERSDRK 800
EDD A R + EA + + + KS PAA + K+ A ++ + K
Sbjct: 686 EDDEALRAKVDEALSVYDEYMKNKSDEPAAEKPKEAAQEAPAEENK 731
Score = 57 (25.1 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 719 DDVEQSESKDDSNSKGTGLTSSR--RGDLSSERIQGDSGEDDSAAREEKK--EANK---S 771
DDV+ + ++ GT +TS++ R E +S +SA +E +K E K +
Sbjct: 335 DDVDDDKLRELFGPYGT-ITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAA 393
Query: 772 ERSDRKKSPSPAAREEKKEANKSE 795
E ++++ + EKK KS+
Sbjct: 394 EEKEKEEKKEAEQKPEKKPLGKSK 417
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 151 (58.2 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 32/94 (34%), Positives = 53/94 (56%)
Query: 186 GSF--DSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCG 243
G+F GD T +++G L+ +T++ L + F +G + S+KI P G+ CG
Sbjct: 294 GAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI--PV-------GKGCG 344
Query: 244 FVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKS 277
FV F+NR + E AL+ LNG + ++L WG++
Sbjct: 345 FVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRN 378
>UNIPROTKB|Q8IWX8 [details] [associations]
symbol:CHERP "Calcium homeostasis endoplasmic reticulum
protein" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IDA] [GO:0051209 "release of
sequestered calcium ion into cytosol" evidence=IMP] [GO:0051533
"positive regulation of NFAT protein import into nucleus"
evidence=IMP] [GO:0044325 "ion channel binding" evidence=IPI]
[GO:0033017 "sarcoplasmic reticulum membrane" evidence=ISS]
[GO:0007399 "nervous system development" evidence=TAS] [GO:0006874
"cellular calcium ion homeostasis" evidence=IDA] [GO:0008285
"negative regulation of cell proliferation" evidence=IDA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
EMBL:AF536542 GO:GO:0048471 GO:GO:0008285 GO:GO:0007399
GO:GO:0051209 GO:GO:0003723 GO:GO:0006396 GO:GO:0051533
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0033017
EMBL:AC008764 EMBL:BC021294 EMBL:Y08265 EMBL:U94836 IPI:IPI00333010
RefSeq:NP_006378.3 UniGene:Hs.740364 HSSP:Q8CH02
ProteinModelPortal:Q8IWX8 SMR:Q8IWX8 IntAct:Q8IWX8
MINT:MINT-1637299 STRING:Q8IWX8 PhosphoSite:Q8IWX8 DMDM:296439404
PaxDb:Q8IWX8 PRIDE:Q8IWX8 Ensembl:ENST00000546361 GeneID:10523
KEGG:hsa:10523 UCSC:uc002nei.1 CTD:10523 GeneCards:GC19M016629
HGNC:HGNC:16930 HPA:HPA050647 neXtProt:NX_Q8IWX8 PharmGKB:PA26459
eggNOG:NOG267701 HOGENOM:HOG000010294 HOVERGEN:HBG052716
InParanoid:Q8IWX8 KO:K12841 OrthoDB:EOG4BCDMG PhylomeDB:Q8IWX8
GenomeRNAi:10523 NextBio:39918 Bgee:Q8IWX8 CleanEx:HS_CHERP
Genevestigator:Q8IWX8 InterPro:IPR006903 InterPro:IPR006569
Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
Uniprot:Q8IWX8
Length = 916
Score = 108 (43.1 bits), Expect = 3.4e-07, Sum P(3) = 3.4e-07
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 348 PTDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKM 403
P D+ L +I ++ +FV R GP FE M M K+ NP + FLF + + YY+ K+
Sbjct: 7 PDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGEF--YSYYKCKL 60
Score = 77 (32.2 bits), Expect = 3.4e-07, Sum P(3) = 3.4e-07
Identities = 25/84 (29%), Positives = 37/84 (44%)
Query: 726 SKDDSNSKGTGLTSSRRGDLSSERIQGDS-GEDDSAAREEKKEANKSE---RSDRKKSPS 781
S+ S SK G +SSR SS+ S S +R + ++S RS R +S S
Sbjct: 737 SRSRSRSKSRGRSSSRSNSRSSKSSGSYSRSRSRSCSRSYSRSRSRSRSRSRSSRSRSRS 796
Query: 782 PAAREEKKEANKSERSDRKKSPSP 805
+ K + R R +SP+P
Sbjct: 797 QSRSRSKSYSPGRRRRSRSRSPTP 820
Score = 66 (28.3 bits), Expect = 3.4e-07, Sum P(3) = 3.4e-07
Identities = 26/110 (23%), Positives = 53/110 (48%)
Query: 498 CECIMESLSNESTA--LH--KKIGRLYLVSDILHNCGIKISNASFYRRGFESRLFQIFTE 553
CE + L N TA H ++ +YL++D+LH+C K + R + L ++
Sbjct: 190 CELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQRKQA------RELLAALQKVVVP 243
Query: 554 MHIT-YVNLESRLKAEGLRTRVMQVFRAWEDWAVYPKDYLIKLQNVFLGL 602
++ T ++ +E E + ++ ++ + WE + + +LQ+ LGL
Sbjct: 244 IYCTSFLAVE-----EDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGL 288
Score = 61 (26.5 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 23/95 (24%), Positives = 35/95 (36%)
Query: 706 EENEDSAVTSSKWDDVEQSESKDDSNS---KGTGLTSSRRGDLSSERIQGDSGEDDSAAR 762
+E +S + S+ + S SNS K +G S R S S +R
Sbjct: 729 QEKRNSGPSRSRSRSKSRGRSSSRSNSRSSKSSGSYSRSRSRSCSRSYSRSRSRSRSRSR 788
Query: 763 EEKKEANKSERSDRKKSPSPAAREEKKEANKSERS 797
+ + RS R KS SP R + + + S
Sbjct: 789 SSRSRSRSQSRS-RSKSYSPGRRRRSRSRSPTPPS 822
Score = 54 (24.1 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
Identities = 19/83 (22%), Positives = 32/83 (38%)
Query: 700 SKWETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDS 759
S+ + S+ ++S+ S S+ S S + SR S R S
Sbjct: 739 SRSRSKSRGRSSSRSNSRSSKSSGSYSRSRSRSCSRSYSRSRSRSRSRSRSSRSRSRSQS 798
Query: 760 AAREEKKEANKSERSDRKKSPSP 782
+R + + RS R +SP+P
Sbjct: 799 RSRSKSYSPGRRRRS-RSRSPTP 820
Score = 46 (21.3 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 15/63 (23%), Positives = 27/63 (42%)
Query: 746 SSERIQGDSGEDDSAARE---EKKEANKSERSDRKKS-PSPAAREEKKEANKSERSDRKK 801
S +R + G + + E K A + + +++ S PS + K S RS+ +
Sbjct: 698 SHDRPRNSEGWEQNGLYEFFRAKMRARRRKGQEKRNSGPSRSRSRSKSRGRSSSRSNSRS 757
Query: 802 SPS 804
S S
Sbjct: 758 SKS 760
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 138 (53.6 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 27/95 (28%), Positives = 52/95 (54%)
Query: 179 IYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKAR 238
I +++ + FD TN+Y+ N+NP++T+ + +F +YG + S + D+E +
Sbjct: 225 IPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLA---RDQETGK 281
Query: 239 GRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273
R GFV F + +D +A++ LN K+ + +G
Sbjct: 282 SRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVG 316
Score = 116 (45.9 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGE 254
+ +LY+G L+P +TE L E+F + G +ASI++ D R +V + DGE
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVC---RDAVTRRSLGYAYVNYNTTADGE 116
Query: 255 RALKYLNGKDVQSYEMKLGWGK 276
+AL+ LN ++ ++ W +
Sbjct: 117 KALEELNYTLIKGRPCRIMWSQ 138
Score = 65 (27.9 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 740 SRRGDLSSERIQGDS----GEDDSAAREEKKEANKSERSDRKKSPSPAAREEKKEANKSE 795
S G ++S ++ DS GE+ + E+ E NK + + K+ E++ E +KS+
Sbjct: 367 SEFGPITSAKVMRDSITEPGEEGESKEGEESEKNKENKPEEKEGDDSKPEEKEGEDSKSK 426
Score = 49 (22.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 16/67 (23%), Positives = 30/67 (44%)
Query: 708 NEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKE 767
+E +TS+K +E ++ SK G S + + E +GD + + E+ K
Sbjct: 367 SEFGPITSAKVMRDSITEPGEEGESK-EGEESEKNKENKPEEKEGDDSKPEEKEGEDSKS 425
Query: 768 ANKSERS 774
+K +S
Sbjct: 426 KSKLGKS 432
Score = 46 (21.3 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 25/114 (21%), Positives = 45/114 (39%)
Query: 685 PMDKVKPARAATFIPSKWETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGD 744
P+ K R + P + +E E+S +K + E+ E D + G S +
Sbjct: 371 PITSAKVMRDSITEPGEEGESKEGEESE--KNKENKPEEKEGDDSKPEEKEGEDSKSKSK 428
Query: 745 LSSERIQGD---SGEDDSAAREEKKEANKSERSDRKKSPSPAAREEKKEANKSE 795
L + G + DD+ K A ++R K P A ++K+ K++
Sbjct: 429 LGKSKGFGFVCFANPDDAT----KAVAEMNQRMVNNK-PLYVALAQRKDVRKNQ 477
Score = 41 (19.5 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 14/51 (27%), Positives = 19/51 (37%)
Query: 753 DSGEDDSAAREEKKEANK--SERSDRKKSPSPAAREEKKEANKSERSDRKK 801
D DD R+ E S + R P E KE +SE++ K
Sbjct: 354 DDEVDDEKLRQLFSEFGPITSAKVMRDSITEPGEEGESKEGEESEKNKENK 404
>UNIPROTKB|J9NZK1 [details] [associations]
symbol:CHERP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 GO:GO:0003723
GO:GO:0006396 Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
CTD:10523 KO:K12841 InterPro:IPR006903 InterPro:IPR006569
Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
GeneTree:ENSGT00600000084415 EMBL:AAEX03012307 RefSeq:XP_852773.2
ProteinModelPortal:J9NZK1 Ensembl:ENSCAFT00000050032 GeneID:610237
KEGG:cfa:610237 Uniprot:J9NZK1
Length = 916
Score = 108 (43.1 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 348 PTDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKM 403
P D+ L +I ++ +FV R GP FE M M K+ NP + FLF + + YY+ K+
Sbjct: 7 PDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGEF--YSYYKCKL 60
Score = 76 (31.8 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 25/84 (29%), Positives = 37/84 (44%)
Query: 726 SKDDSNSKGTGLTSSRRGDLSSERIQGDS-GEDDSAAREEKKEANKSE---RSDRKKSPS 781
S+ S SK G +SSR SS+ S S +R + ++S RS R +S S
Sbjct: 737 SRSRSRSKSRGRSSSRSNSRSSKSSGSYSRSRSRSCSRSYSRSRSRSRSRSRSSRSRSRS 796
Query: 782 PAAREEKKEANKSERSDRKKSPSP 805
+ K + R R +SP+P
Sbjct: 797 RSRSRSKSYSPGRRRRSRSRSPTP 820
Score = 66 (28.3 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 26/110 (23%), Positives = 53/110 (48%)
Query: 498 CECIMESLSNESTA--LH--KKIGRLYLVSDILHNCGIKISNASFYRRGFESRLFQIFTE 553
CE + L N TA H ++ +YL++D+LH+C K + R + L ++
Sbjct: 190 CELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQRKQA------RELLAALQKVVVP 243
Query: 554 MHIT-YVNLESRLKAEGLRTRVMQVFRAWEDWAVYPKDYLIKLQNVFLGL 602
++ T ++ +E E + ++ ++ + WE + + +LQ+ LGL
Sbjct: 244 IYCTSFLAVE-----EDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGL 288
Score = 60 (26.2 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 23/95 (24%), Positives = 35/95 (36%)
Query: 706 EENEDSAVTSSKWDDVEQSESKDDSNS---KGTGLTSSRRGDLSSERIQGDSGEDDSAAR 762
+E +S + S+ + S SNS K +G S R S S +R
Sbjct: 729 QEKRNSGPSRSRSRSKSRGRSSSRSNSRSSKSSGSYSRSRSRSCSRSYSRSRSRSRSRSR 788
Query: 763 EEKKEANKSERSDRKKSPSPAAREEKKEANKSERS 797
+ + RS R KS SP R + + + S
Sbjct: 789 SSRSRSRSRSRS-RSKSYSPGRRRRSRSRSPTPPS 822
Score = 54 (24.1 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
Identities = 19/85 (22%), Positives = 33/85 (38%)
Query: 699 PSKWETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDD 758
PS+ + ++ + + S + S S S S+ + SR S R +
Sbjct: 736 PSRSRSRSKSRGRSSSRSNSRSSKSSGSYSRSRSRSCSRSYSRSRSRSRSRSRSSRSRSR 795
Query: 759 SAAREEKKEANKSERS-DRKKSPSP 782
S +R K + R R +SP+P
Sbjct: 796 SRSRSRSKSYSPGRRRRSRSRSPTP 820
Score = 46 (21.3 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 15/63 (23%), Positives = 27/63 (42%)
Query: 746 SSERIQGDSGEDDSAARE---EKKEANKSERSDRKKS-PSPAAREEKKEANKSERSDRKK 801
S +R + G + + E K A + + +++ S PS + K S RS+ +
Sbjct: 698 SHDRPRNSEGWEQNGLYEFFRAKMRARRRKGQEKRNSGPSRSRSRSKSRGRSSSRSNSRS 757
Query: 802 SPS 804
S S
Sbjct: 758 SKS 760
>UNIPROTKB|J3QK89 [details] [associations]
symbol:CHERP "Calcium homeostasis endoplasmic reticulum
protein" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
GO:GO:0003723 GO:GO:0006396 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 EMBL:AC008764 HGNC:HGNC:16930 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SUPFAM:SSF109905 PROSITE:PS51391
ProteinModelPortal:J3QK89 Ensembl:ENST00000198939 OMA:FEGPWNS
Uniprot:J3QK89
Length = 927
Score = 108 (43.1 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 348 PTDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKM 403
P D+ L +I ++ +FV R GP FE M M K+ NP + FLF + + YY+ K+
Sbjct: 7 PDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGEF--YSYYKCKL 60
Score = 77 (32.2 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 25/84 (29%), Positives = 37/84 (44%)
Query: 726 SKDDSNSKGTGLTSSRRGDLSSERIQGDS-GEDDSAAREEKKEANKSE---RSDRKKSPS 781
S+ S SK G +SSR SS+ S S +R + ++S RS R +S S
Sbjct: 748 SRSRSRSKSRGRSSSRSNSRSSKSSGSYSRSRSRSCSRSYSRSRSRSRSRSRSSRSRSRS 807
Query: 782 PAAREEKKEANKSERSDRKKSPSP 805
+ K + R R +SP+P
Sbjct: 808 QSRSRSKSYSPGRRRRSRSRSPTP 831
Score = 65 (27.9 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 23/110 (20%), Positives = 50/110 (45%)
Query: 498 CECIMESLSNESTA--LH--KKIGRLYLVSDILHNCGIKISNASFYRRGFESRLFQIFTE 553
CE + L N TA H ++ +YL++D+LH+ + + + + ++R +
Sbjct: 190 CELMAGHLRNRITADGAHFELRLHLIYLINDVLHHWALTRGKSLPHSQRKQARELLAALQ 249
Query: 554 MHITYVNLESRLKAE-GLRTRVMQVFRAWEDWAVYPKDYLIKLQNVFLGL 602
+ + S L E + ++ ++ + WE + + +LQ+ LGL
Sbjct: 250 KVVVPIYCTSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGL 299
Score = 61 (26.5 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 23/95 (24%), Positives = 35/95 (36%)
Query: 706 EENEDSAVTSSKWDDVEQSESKDDSNS---KGTGLTSSRRGDLSSERIQGDSGEDDSAAR 762
+E +S + S+ + S SNS K +G S R S S +R
Sbjct: 740 QEKRNSGPSRSRSRSKSRGRSSSRSNSRSSKSSGSYSRSRSRSCSRSYSRSRSRSRSRSR 799
Query: 763 EEKKEANKSERSDRKKSPSPAAREEKKEANKSERS 797
+ + RS R KS SP R + + + S
Sbjct: 800 SSRSRSRSQSRS-RSKSYSPGRRRRSRSRSPTPPS 833
Score = 54 (24.1 bits), Expect = 8.4e-05, Sum P(3) = 8.4e-05
Identities = 19/83 (22%), Positives = 32/83 (38%)
Query: 700 SKWETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDS 759
S+ + S+ ++S+ S S+ S S + SR S R S
Sbjct: 750 SRSRSKSRGRSSSRSNSRSSKSSGSYSRSRSRSCSRSYSRSRSRSRSRSRSSRSRSRSQS 809
Query: 760 AAREEKKEANKSERSDRKKSPSP 782
+R + + RS R +SP+P
Sbjct: 810 RSRSKSYSPGRRRRS-RSRSPTP 831
Score = 46 (21.3 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 15/63 (23%), Positives = 27/63 (42%)
Query: 746 SSERIQGDSGEDDSAARE---EKKEANKSERSDRKKS-PSPAAREEKKEANKSERSDRKK 801
S +R + G + + E K A + + +++ S PS + K S RS+ +
Sbjct: 709 SHDRPRNSEGWEQNGLYEFFRAKMRARRRKGQEKRNSGPSRSRSRSKSRGRSSSRSNSRS 768
Query: 802 SPS 804
S S
Sbjct: 769 SKS 771
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 149 (57.5 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 40/161 (24%), Positives = 77/161 (47%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
N+++G+L+P++T+ L + F + + ++MW D++ R R GFV+F N++D + A
Sbjct: 145 NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMW---DQKTGRSRGFGFVSFRNQQDAQTA 201
Query: 257 LKYLNGKDVQSYEMKLGWG-KSVXXXXXXXXXXXK-MLELTVPPPPSGLPFNAQPASKDK 314
+ +NGK + S +++ W K K ++ELT G + ++
Sbjct: 202 INEMNGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPENN 261
Query: 315 HRIPKLRPGE--P-LTREDLDRLDQILNQAYVKVV-VPTDR 351
+ + G P +T+ DL R L ++ V V D+
Sbjct: 262 SQFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDK 302
Score = 121 (47.7 bits), Expect = 0.00052, P = 0.00052
Identities = 34/105 (32%), Positives = 56/105 (53%)
Query: 174 PSAIAIYQEET--KGSFDSG-DPCTT-NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMW 229
P +A Q E G+ G DP T ++Y+GN++ ++TE L EIF GP+ S K++
Sbjct: 33 PGVLAPPQLEPVPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLI- 91
Query: 230 PRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGW 274
R D+ + GFV + +R+ A+ LNG+ + +K+ W
Sbjct: 92 -RKDKS-----SYGFVHYFDRRSAALAILSLNGRHLFGQPIKVNW 130
>UNIPROTKB|E2RHU5 [details] [associations]
symbol:CHERP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 GO:GO:0003723
GO:GO:0006396 Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
SUPFAM:SSF109905 PROSITE:PS51391 GeneTree:ENSGT00600000084415
OMA:FEGPWNS EMBL:AAEX03012307 Ensembl:ENSCAFT00000024839
NextBio:20895802 Uniprot:E2RHU5
Length = 940
Score = 108 (43.1 bits), Expect = 4.6e-07, Sum P(3) = 4.6e-07
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 348 PTDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKM 403
P D+ L +I ++ +FV R GP FE M M K+ NP + FLF + + YY+ K+
Sbjct: 7 PDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGEF--YSYYKCKL 60
Score = 76 (31.8 bits), Expect = 4.6e-07, Sum P(3) = 4.6e-07
Identities = 25/84 (29%), Positives = 37/84 (44%)
Query: 726 SKDDSNSKGTGLTSSRRGDLSSERIQGDS-GEDDSAAREEKKEANKSE---RSDRKKSPS 781
S+ S SK G +SSR SS+ S S +R + ++S RS R +S S
Sbjct: 737 SRSRSRSKSRGRSSSRSNSRSSKSSGSYSRSRSRSCSRSYSRSRSRSRSRSRSSRSRSRS 796
Query: 782 PAAREEKKEANKSERSDRKKSPSP 805
+ K + R R +SP+P
Sbjct: 797 RSRSRSKSYSPGRRRRSRSRSPTP 820
Score = 66 (28.3 bits), Expect = 4.6e-07, Sum P(3) = 4.6e-07
Identities = 26/110 (23%), Positives = 53/110 (48%)
Query: 498 CECIMESLSNESTA--LH--KKIGRLYLVSDILHNCGIKISNASFYRRGFESRLFQIFTE 553
CE + L N TA H ++ +YL++D+LH+C K + R + L ++
Sbjct: 190 CELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQRKQA------RELLAALQKVVVP 243
Query: 554 MHIT-YVNLESRLKAEGLRTRVMQVFRAWEDWAVYPKDYLIKLQNVFLGL 602
++ T ++ +E E + ++ ++ + WE + + +LQ+ LGL
Sbjct: 244 IYCTSFLAVE-----EDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGL 288
Score = 60 (26.2 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 23/95 (24%), Positives = 35/95 (36%)
Query: 706 EENEDSAVTSSKWDDVEQSESKDDSNS---KGTGLTSSRRGDLSSERIQGDSGEDDSAAR 762
+E +S + S+ + S SNS K +G S R S S +R
Sbjct: 729 QEKRNSGPSRSRSRSKSRGRSSSRSNSRSSKSSGSYSRSRSRSCSRSYSRSRSRSRSRSR 788
Query: 763 EEKKEANKSERSDRKKSPSPAAREEKKEANKSERS 797
+ + RS R KS SP R + + + S
Sbjct: 789 SSRSRSRSRSRS-RSKSYSPGRRRRSRSRSPTPPS 822
Score = 54 (24.1 bits), Expect = 7.0e-05, Sum P(3) = 7.0e-05
Identities = 19/85 (22%), Positives = 33/85 (38%)
Query: 699 PSKWETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDD 758
PS+ + ++ + + S + S S S S+ + SR S R +
Sbjct: 736 PSRSRSRSKSRGRSSSRSNSRSSKSSGSYSRSRSRSCSRSYSRSRSRSRSRSRSSRSRSR 795
Query: 759 SAAREEKKEANKSERS-DRKKSPSP 782
S +R K + R R +SP+P
Sbjct: 796 SRSRSRSKSYSPGRRRRSRSRSPTP 820
Score = 46 (21.3 bits), Expect = 0.00043, Sum P(3) = 0.00043
Identities = 15/63 (23%), Positives = 27/63 (42%)
Query: 746 SSERIQGDSGEDDSAARE---EKKEANKSERSDRKKS-PSPAAREEKKEANKSERSDRKK 801
S +R + G + + E K A + + +++ S PS + K S RS+ +
Sbjct: 698 SHDRPRNSEGWEQNGLYEFFRAKMRARRRKGQEKRNSGPSRSRSRSKSRGRSSSRSNSRS 757
Query: 802 SPS 804
S S
Sbjct: 758 SKS 760
>UNIPROTKB|E7ETC0 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI01012546 ProteinModelPortal:E7ETC0 SMR:E7ETC0
Ensembl:ENST00000497671 ArrayExpress:E7ETC0 Bgee:E7ETC0
Uniprot:E7ETC0
Length = 135
Score = 126 (49.4 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 189 DSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFM 248
D G P T LY+GNL+ +TE ++++F + GP S K++ E + C FV F
Sbjct: 4 DDGQPRT--LYVGNLSRDVTEVLILQLFSQIGPCKSCKMI----TEHTSNDPYC-FVEFY 56
Query: 249 NRKDGERALKYLNGKDVQSYEMKLGW 274
+D AL +NG+ + E+K+ W
Sbjct: 57 EHRDAAAALAAMNGRKILGKEVKVNW 82
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 150 (57.9 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 29/78 (37%), Positives = 49/78 (62%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ N + +++L E+FG+YGP S+K+M D K++G GFV+F +D ++
Sbjct: 191 TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVM--TDDNGKSKG--FGFVSFERHEDAQK 246
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ +NGKD+ M +G
Sbjct: 247 AVDEMNGKDMNGKSMFVG 264
>UNIPROTKB|A8E648 [details] [associations]
symbol:CHERP "CHERP protein" species:9913 "Bos taurus"
[GO:0051533 "positive regulation of NFAT protein import into
nucleus" evidence=IEA] [GO:0051209 "release of sequestered calcium
ion into cytosol" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0044325 "ion channel binding"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
GO:GO:0048471 GO:GO:0008285 GO:GO:0051209 GO:GO:0003723
GO:GO:0006396 GO:GO:0051533 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 CTD:10523 eggNOG:NOG267701 HOGENOM:HOG000010294
HOVERGEN:HBG052716 KO:K12841 OrthoDB:EOG4BCDMG InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 GeneTree:ENSGT00600000084415 OMA:FEGPWNS
EMBL:DAAA02019093 EMBL:BC153841 IPI:IPI00871125
RefSeq:NP_001103268.1 UniGene:Bt.46185 Ensembl:ENSBTAT00000006959
GeneID:525110 KEGG:bta:525110 InParanoid:A8E648 NextBio:20874102
Uniprot:A8E648
Length = 916
Score = 108 (43.1 bits), Expect = 6.7e-07, Sum P(3) = 6.7e-07
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 348 PTDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKM 403
P D+ L +I ++ +FV R GP FE M M K+ NP + FLF + + YY+ K+
Sbjct: 7 PDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGEF--YSYYKCKL 60
Score = 74 (31.1 bits), Expect = 6.7e-07, Sum P(3) = 6.7e-07
Identities = 27/100 (27%), Positives = 48/100 (48%)
Query: 706 EENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEK 765
+E +S + S+ +S+S+ S+S+ +S G S R + S S +R
Sbjct: 729 QEKRNSGPSRSR----SRSKSRGRSSSRSNSRSSKSSGSYSRSRSRSCS-RSYSRSRSRS 783
Query: 766 KEANKSERSDRKKSPSPAAREEKKEANKSERSDRKKSPSP 805
+ ++S RS R +S S +R + + RS R +SP+P
Sbjct: 784 RSRSRSSRS-RSRSRS-RSRSKSYSPGRRHRS-RSRSPTP 820
Score = 66 (28.3 bits), Expect = 6.7e-07, Sum P(3) = 6.7e-07
Identities = 26/110 (23%), Positives = 53/110 (48%)
Query: 498 CECIMESLSNESTA--LH--KKIGRLYLVSDILHNCGIKISNASFYRRGFESRLFQIFTE 553
CE + L N TA H ++ +YL++D+LH+C K + R + L ++
Sbjct: 190 CELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQRKQA------RELLAALQKVVVP 243
Query: 554 MHIT-YVNLESRLKAEGLRTRVMQVFRAWEDWAVYPKDYLIKLQNVFLGL 602
++ T ++ +E E + ++ ++ + WE + + +LQ+ LGL
Sbjct: 244 IYCTSFLAVE-----EDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGL 288
Score = 54 (24.1 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
Identities = 19/85 (22%), Positives = 33/85 (38%)
Query: 699 PSKWETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDD 758
PS+ + ++ + + S + S S S S+ + SR S R +
Sbjct: 736 PSRSRSRSKSRGRSSSRSNSRSSKSSGSYSRSRSRSCSRSYSRSRSRSRSRSRSSRSRSR 795
Query: 759 SAAREEKKEANKSERS-DRKKSPSP 782
S +R K + R R +SP+P
Sbjct: 796 SRSRSRSKSYSPGRRHRSRSRSPTP 820
Score = 46 (21.3 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 15/63 (23%), Positives = 27/63 (42%)
Query: 746 SSERIQGDSGEDDSAARE---EKKEANKSERSDRKKS-PSPAAREEKKEANKSERSDRKK 801
S +R + G + + E K A + + +++ S PS + K S RS+ +
Sbjct: 698 SHDRPRNSEGWEQNGLYEFFRAKMRARRRKGQEKRNSGPSRSRSRSKSRGRSSSRSNSRS 757
Query: 802 SPS 804
S S
Sbjct: 758 SKS 760
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 147 (56.8 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 30/87 (34%), Positives = 50/87 (57%)
Query: 191 GDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNR 250
GD T +++G L+ +T++ L + F +G + S+KI P G+ CGFV F+NR
Sbjct: 299 GDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKI--PV-------GKGCGFVQFVNR 349
Query: 251 KDGERALKYLNGKDVQSYEMKLGWGKS 277
+ E AL+ LNG + ++L WG++
Sbjct: 350 PNAEEALEKLNGTVIGKQTVRLSWGRN 376
>UNIPROTKB|E2RIB8 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005794 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074976 KO:K14573 CTD:55131 OMA:KSMNMKE
EMBL:AAEX03009272 EMBL:AAEX03009273 RefSeq:XP_532435.3
ProteinModelPortal:E2RIB8 Ensembl:ENSCAFT00000002617 GeneID:475203
KEGG:cfa:475203 NextBio:20851079 Uniprot:E2RIB8
Length = 751
Score = 121 (47.7 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 37/123 (30%), Positives = 62/123 (50%)
Query: 152 EREERHKYKGVLKGVYSEEAEPPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQ 211
++++R+K K KG +E +EPP ++E K L + NL+ K +E
Sbjct: 79 KKKQRNKSKE--KGE-NENSEPP------KKEPKPKKPKVADKKARLIIRNLSFKCSEDD 129
Query: 212 LMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271
L +FG+YG + + I PR + K RG FV F N + +ALK +N K+++ +
Sbjct: 130 LKTVFGQYGAVLEVNI--PRKPDGKMRG--FAFVQFKNLLEAGKALKSMNMKEIKGRTVA 185
Query: 272 LGW 274
+ W
Sbjct: 186 VDW 188
Score = 76 (31.8 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 22/76 (28%), Positives = 36/76 (47%)
Query: 720 DVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKKS 779
+VEQ E D + + S RG +R D G S ++ K S++ +++K
Sbjct: 647 EVEQVELPDGKKRRKVLVLPSHRGPKIRQR---DKGRVKSLPPKKPKPQINSQKQEKQKL 703
Query: 780 PSPAAREEKKEANKSE 795
PS A +K + NK+E
Sbjct: 704 PSNQAPRKKAKGNKTE 719
Score = 66 (28.3 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 24/105 (22%), Positives = 41/105 (39%)
Query: 703 ETVEENEDSAVTSSKWDDVEQSES-KDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAA 761
E E ED + DD E+ E ++D S+ T ++ + S ED S
Sbjct: 219 ENGREEEDMEEEEEEEDDTEEEEDGEEDKESRVTKPAQIQKRAVRRAAPAESSEEDHSDE 278
Query: 762 REEKKEANKSERSDRKKSPSPAAREEKKEANKSERSDRKKSPSPV 806
KE + S + + E++ E + + ++K PS V
Sbjct: 279 DSGLKERDDSIDGEELAQSDTNSEEQEDEDMQISKKKKRKLPSDV 323
Score = 63 (27.2 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 27/128 (21%), Positives = 54/128 (42%)
Query: 678 GEDLDGVPMDKVKPARAATFIPSKWETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGL 737
G+ L + M ++K A W ++ + ++S + ++ E K SK G
Sbjct: 168 GKALKSMNMKEIKGRTVAV----DWAVAKDKYKNTQSASAPGE-KRPEPKHQELSKENGR 222
Query: 738 TSSRRGDLSSERIQGDSGEDDSAAREEK-----KEANKSERSDRKKSPSPAAREEKKEAN 792
D+ E + D E++ E+K K A +R+ R+ +P+ ++ E+ + +
Sbjct: 223 EEE---DMEEEEEEEDDTEEEEDGEEDKESRVTKPAQIQKRAVRRAAPAESSEEDHSDED 279
Query: 793 KS--ERSD 798
ER D
Sbjct: 280 SGLKERDD 287
Score = 53 (23.7 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 745 LSSERIQGDSGEDDSAAREEKKEANKSERSDRKKSPSPAAREEKKEANKSERSDRKK 801
++ + I+G + D A ++K + +S + +K P P +E KE N E D ++
Sbjct: 174 MNMKEIKGRTVAVDWAVAKDKYKNTQSASAPGEKRPEPKHQELSKE-NGREEEDMEE 229
Score = 45 (20.9 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 32/112 (28%), Positives = 42/112 (37%)
Query: 583 DWAVYPKDYLIKLQNVFL-GLSDAVP----LDANNGNEED-----EDLDGAPLSDVDGE- 631
DWAV KD Q+ G P L NG EE+ E+ + + DGE
Sbjct: 187 DWAV-AKDKYKNTQSASAPGEKRPEPKHQELSKENGREEEDMEEEEEEEDDTEEEEDGEE 245
Query: 632 DLDGVPLDGAALMKSLQR--LPHSSSAPDEDDIDGVPCTYNITSATMDGEDL 681
D + A + K R P SS D D D ++DGE+L
Sbjct: 246 DKESRVTKPAQIQKRAVRRAAPAESSEEDHSDEDS---GLKERDDSIDGEEL 294
Score = 42 (19.8 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 609 DANNG-NEEDEDLDGAPLSDVDGEDLDGVPLDGAALMKSLQRLP 651
D ++G E D+ +DG L+ D + D K ++LP
Sbjct: 277 DEDSGLKERDDSIDGEELAQSDTNSEEQEDEDMQISKKKKRKLP 320
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 122 (48.0 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G L+ EQ L ++F +YG ++ + ++ D E R R GFV F N D + A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVV---KDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 258 KYLNGKDVQSYEMKLGW-GKS 277
+NGK V ++++ GKS
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKS 85
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 122 (48.0 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G L+ EQ L ++F +YG ++ + ++ D E R R GFV F N D + A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVV---KDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 258 KYLNGKDVQSYEMKLGW-GKS 277
+NGK V ++++ GKS
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKS 85
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 138 (53.6 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 23/78 (29%), Positives = 49/78 (62%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ N + +++L ++FG++GP S+K+M +E + + GFV+F +D ++
Sbjct: 24 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 79
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ +NGK++ ++ +G
Sbjct: 80 AVDEMNGKELNGKQIYVG 97
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 150 (57.9 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 32/92 (34%), Positives = 51/92 (55%)
Query: 186 GSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFV 245
GS G+ + +++G L+ +TE+ LM+ F +G + S+KI P G+ CGFV
Sbjct: 317 GSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKI--PV-------GKGCGFV 367
Query: 246 AFMNRKDGERALKYLNGKDVQSYEMKLGWGKS 277
F NR+ E A+ LNG + ++L WG+S
Sbjct: 368 QFANRQSAEEAIGNLNGTVIGKNTVRLSWGRS 399
Score = 38 (18.4 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 409 GDQP-KEWRTNEFRMFDGG 426
G P K+WR++ ++GG
Sbjct: 397 GRSPNKQWRSDSGNQWNGG 415
>SGD|S000000416 [details] [associations]
symbol:NGR1 "RNA binding protein that negatively regulates
growth rate" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] [GO:0007005 "mitochondrion organization"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0061158 "3'-UTR-mediated
mRNA destabilization" evidence=IMP;IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000000416 GO:GO:0048471 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006936 GO:GO:0000932
GO:GO:0007005 GO:GO:0010494 eggNOG:COG0724 OrthoDB:EOG44BFB8
RefSeq:NP_009771.3 GeneID:852513 KEGG:sce:YBR212W
GeneTree:ENSGT00510000047100 EMBL:Z14097 EMBL:Z36081 PIR:S46086
RefSeq:NP_009775.3 ProteinModelPortal:P32831 SMR:P32831
DIP:DIP-5160N IntAct:P32831 MINT:MINT-513097 STRING:P32831
PaxDb:P32831 PeptideAtlas:P32831 EnsemblFungi:YBR212W GeneID:852517
KEGG:sce:YBR216C CYGD:YBR212w OMA:RFANETE NextBio:971535
Genevestigator:P32831 GermOnline:YBR212W GO:GO:0061158
Uniprot:P32831
Length = 672
Score = 145 (56.1 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 32/85 (37%), Positives = 48/85 (56%)
Query: 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRK 251
DP T +++G L PK TE QL +F +GP+ +++I P G+NCGFV F R
Sbjct: 356 DPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRI--PN-------GKNCGFVKFEKRI 406
Query: 252 DGERALKYLNGKDVQSYEMKLGWGK 276
D E +++ L G V ++L WG+
Sbjct: 407 DAEASIQGLQGFIVGGSPIRLSWGR 431
>ZFIN|ZDB-GENE-070822-11 [details] [associations]
symbol:zgc:171310 "zgc:171310" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070822-11 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:KOG0123 EMBL:BC133817
IPI:IPI00962866 UniGene:Dr.151544 Ensembl:ENSDART00000100879
GeneTree:ENSGT00460000042084 HOGENOM:HOG000170340
HOVERGEN:HBG099562 InParanoid:A3KNF8 Uniprot:A3KNF8
Length = 342
Score = 109 (43.4 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L + NL+P +TEQQL+E FG G ++++++ R++ FV F +R+D RA
Sbjct: 107 LLVSNLHPMVTEQQLIEKFGALGSISTVQVC--RNNIISPA---YAFVTFHHRRDAVRAQ 161
Query: 258 KYLNGKDVQSYEMKLGWG 275
K LN D+ + + + WG
Sbjct: 162 KALNFTDLLNKPLIIMWG 179
Score = 77 (32.2 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 29/98 (29%), Positives = 47/98 (47%)
Query: 703 ETVEENEDSAVTSSKW-DDVEQSESKDDSNSKGTGLTSSRRGDLSSER-IQGDSGEDDSA 760
ET EE + S T K D E+ ++ ++ + G T R+ +ER GD+ E ++
Sbjct: 206 ET-EERKTSEETERKAAGDTEERKTSGETEREAAGDTEERKTSGETEREAAGDTEERKTS 264
Query: 761 AREEKKEANKSE-RSDRKKSPSPAAREEKKEANKSERS 797
E++ A +E R ++ A E K+ AN SE S
Sbjct: 265 GETEREAAGDTEERKTSGETEREPADETKERAN-SESS 301
Score = 71 (30.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 21/96 (21%), Positives = 47/96 (48%)
Query: 703 ETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRR--GDLSSERIQGDSGEDDSA 760
+T+E D+ +S + E+ E+ ++ + T + R+ GD + G++ + +
Sbjct: 182 KTIEVLSDNDSSSPR--QTEERETAGETEERKTSEETERKAAGDTEERKTSGETEREAAG 239
Query: 761 AREEKKEANKSERSDRKKSPSPAAREEKKEANKSER 796
EE+K + ++ER + EE+K + ++ER
Sbjct: 240 DTEERKTSGETERE------AAGDTEERKTSGETER 269
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 142 (55.0 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 29/92 (31%), Positives = 51/92 (55%)
Query: 186 GSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFV 245
GS G+ +++G ++P + ++ L + F ++G + S+KI P G+ CGFV
Sbjct: 311 GSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKI--PV-------GKGCGFV 361
Query: 246 AFMNRKDGERALKYLNGKDVQSYEMKLGWGKS 277
F +RK E A++ LNG + ++L WG+S
Sbjct: 362 QFADRKSAEDAIESLNGTVIGKNTVRLSWGRS 393
>RGD|1307411 [details] [associations]
symbol:Rbm18 "RNA binding motif protein 18" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1307411 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474001 CTD:92400 GeneTree:ENSGT00390000013765 OMA:EAKLQMM
RefSeq:NP_001101308.1 UniGene:Rn.2745 Ensembl:ENSRNOT00000009706
GeneID:311902 KEGG:rno:311902 NextBio:664432 Uniprot:G3V6X2
Length = 190
Score = 130 (50.8 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 32/118 (27%), Positives = 61/118 (51%)
Query: 184 TKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCG 243
++GS G L++GNL+PKITE L+++ R+G + ++ +S + + R
Sbjct: 17 SEGSLQEGH----RLWIGNLDPKITEYHLLKLLQRFGKVKQFDFLFHKSGALEGQPRGYC 72
Query: 244 FVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVXXXXXXXXXXXKMLELTVPPPPS 301
FV F +++ E+A++ LNGK S ++ + W + K+L +++ P S
Sbjct: 73 FVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHA-QVKRYDHNKNDKILPISLEPSSS 129
>UNIPROTKB|P09406 [details] [associations]
symbol:snrnp70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:8355 "Xenopus laevis" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0043484
"regulation of RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0043484 GO:GO:0000398 InterPro:IPR022023
Pfam:PF12220 EMBL:X12430 PIR:S02016 UniGene:Xl.5366
ProteinModelPortal:P09406 Xenbase:XB-GENE-992825 HOVERGEN:HBG012300
Uniprot:P09406
Length = 471
Score = 106 (42.4 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 30/115 (26%), Positives = 54/115 (46%)
Query: 151 EEREERHKYKGVLKGVYSEEAEPPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQ 210
E REER + K K + + + + + I+ + GD T L++ +N TE
Sbjct: 61 ETREERMERKRREK-IERRQQDVENELKIWDPHNDQNAQ-GDAFKT-LFVARVNYDTTES 117
Query: 211 QLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDV 265
+L F YGP+ I I++ + E + R F+ + + +D A K+ +GK +
Sbjct: 118 KLRREFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHSAYKHADGKKI 172
Score = 84 (34.6 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 24/77 (31%), Positives = 45/77 (58%)
Query: 734 GTGLTSSRRGDLSSERIQGDSGEDDSAA---REEKKEANKSERS-DRKKSPSPA----AR 785
G GL +RRG + I+ SG DD++ R+ ++E ++ ERS +R+K P +R
Sbjct: 196 GGGLGGTRRGG-ADVNIR-HSGRDDTSRYDERDRERERDRRERSREREKEPRERRRSRSR 253
Query: 786 EEKKEANKSERSDRKKS 802
E ++++ E+ +RK++
Sbjct: 254 ERRRKSRSREKEERKRT 270
Score = 66 (28.3 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 19/84 (22%), Positives = 39/84 (46%)
Query: 722 EQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKKSPS 781
E+ +D KG R D +R + S D RE+ ++ ++ R DR +
Sbjct: 351 ERDRERDRDREKGE---KDRDKDRDRDRDRRRSHRDRD--REKDRDRDRDRRRDRDRDRE 405
Query: 782 PAAREEKKEANKSERSDRKKSPSP 805
++ K+E ++ +RS++++ P
Sbjct: 406 -RDKDHKRERDRGDRSEKREERVP 428
Score = 66 (28.3 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 20/92 (21%), Positives = 44/92 (47%)
Query: 710 DSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEAN 769
D + S DD + + +D + RR + S ER + S +RE ++++
Sbjct: 208 DVNIRHSGRDDTSRYDERDRERER------DRR-ERSREREKEPRERRRSRSRERRRKSR 260
Query: 770 KSERSDRKKSPSPAAREEKKEANKSERSDRKK 801
E+ +RK++ + ++K++ ++ DRK+
Sbjct: 261 SREKEERKRTREKSKDKDKEKDKDNKDRDRKR 292
Score = 64 (27.6 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 25/101 (24%), Positives = 45/101 (44%)
Query: 703 ETVEENEDSAVTSSKWDDVEQSESK-DDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAA 761
E EE ++ V + DD Q +++ D G L + S ER D D
Sbjct: 308 EKKEERVEAEVPEA--DDAPQDDAQIGDLGIDGIELKQEPE-EKSRER---DRERDRDRE 361
Query: 762 REEK-KEANKSERSDRKKSPSPAAREEKKEANKSERSDRKK 801
+ EK ++ ++ DR++S RE+ ++ ++ R DR +
Sbjct: 362 KGEKDRDKDRDRDRDRRRSHRDRDREKDRDRDRDRRRDRDR 402
Score = 61 (26.5 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 13/65 (20%), Positives = 35/65 (53%)
Query: 741 RRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKKSPSPAAREEKKEANKSERSDRK 800
RR S E+ + + S ++++K+ + +R DRK+ R+ +++ ++ ++ +R
Sbjct: 256 RRKSRSREKEERKRTREKSKDKDKEKDKDNKDR-DRKRRSRSRERKRERDRDREKKEERV 314
Query: 801 KSPSP 805
++ P
Sbjct: 315 EAEVP 319
Score = 61 (26.5 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 20/98 (20%), Positives = 42/98 (42%)
Query: 704 TVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAARE 763
T E+++D K D + + K S S+ R + ER++ + E D A ++
Sbjct: 270 TREKSKDKDKEKDK--DNKDRDRKRRSRSRERKRERDRDREKKEERVEAEVPEADDAPQD 327
Query: 764 EKKEANKS-ERSDRKKSPSPAAREEKKEANKSERSDRK 800
+ + + + + K+ P +RE +E ++ K
Sbjct: 328 DAQIGDLGIDGIELKQEPEEKSRERDRERDRDREKGEK 365
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 122 (48.0 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G L+ EQ L ++F +YG ++ + ++ D E R R GFV F N D + A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVV---KDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 258 KYLNGKDVQSYEMKLGW-GKS 277
+NGK V ++++ GKS
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKS 85
>WB|WBGene00004701 [details] [associations]
symbol:rsp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0000398
GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 112 (44.5 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
T+L + NL+ + T L F RYG + + I PR D+ + + GFV F R+D E
Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHI--PR-DKYSRQSKGFGFVRFYERRDAEH 75
Query: 256 ALKYLNGKDVQSYEMKLGWGK 276
AL +GK V E+++ K
Sbjct: 76 ALDRTDGKLVDGRELRVTLAK 96
Score = 61 (26.5 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 761 AREEKKEANKSERSDRKKSPSPAAREEKKEANKSERS-DRKKSPSP 805
+R + ++S R R ++ SP +R+ + ++ + S R +SP P
Sbjct: 123 SRSPRYSRSRSPRRSRSRTRSPPSRDRRDSPDRRDNSRSRSRSPPP 168
Score = 51 (23.0 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 761 AREEKKEANKSERSDRKKSPSPAAREEKKEANKSERSDRKKSPSP 805
+R+ + ++ + S R +S SP RE+ + RS R S SP
Sbjct: 146 SRDRRDSPDRRDNS-RSRSRSPPPREDGSPKERRSRS-RSASRSP 188
Score = 45 (20.9 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 776 RKKSPSPAAREEKKEANKSERSDRKKSPSP 805
R +SP +R + ++S R R ++ SP
Sbjct: 115 RSRSPRRRSRSPRYSRSRSPRRSRSRTRSP 144
Score = 42 (19.8 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 723 QSESKDDSNSKGTGLTSSR-RGDLSSERIQGDSGEDDSAAREE----KKEANKSERSDRK 777
+S S S S+ + SR R S +R D+S +R +++ + ER R
Sbjct: 122 RSRSPRYSRSRSPRRSRSRTRSPPSRDRRDSPDRRDNSRSRSRSPPPREDGSPKERRSRS 181
Query: 778 KSPS 781
+S S
Sbjct: 182 RSAS 185
>UNIPROTKB|Q09511 [details] [associations]
symbol:rsp-4 "Probable splicing factor,
arginine/serine-rich 4" species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002009 GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010171 GO:GO:0040011 GO:GO:0003723 GO:GO:0042127
GO:GO:0000398 GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 112 (44.5 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
T+L + NL+ + T L F RYG + + I PR D+ + + GFV F R+D E
Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHI--PR-DKYSRQSKGFGFVRFYERRDAEH 75
Query: 256 ALKYLNGKDVQSYEMKLGWGK 276
AL +GK V E+++ K
Sbjct: 76 ALDRTDGKLVDGRELRVTLAK 96
Score = 61 (26.5 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 761 AREEKKEANKSERSDRKKSPSPAAREEKKEANKSERS-DRKKSPSP 805
+R + ++S R R ++ SP +R+ + ++ + S R +SP P
Sbjct: 123 SRSPRYSRSRSPRRSRSRTRSPPSRDRRDSPDRRDNSRSRSRSPPP 168
Score = 51 (23.0 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 761 AREEKKEANKSERSDRKKSPSPAAREEKKEANKSERSDRKKSPSP 805
+R+ + ++ + S R +S SP RE+ + RS R S SP
Sbjct: 146 SRDRRDSPDRRDNS-RSRSRSPPPREDGSPKERRSRS-RSASRSP 188
Score = 45 (20.9 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 776 RKKSPSPAAREEKKEANKSERSDRKKSPSP 805
R +SP +R + ++S R R ++ SP
Sbjct: 115 RSRSPRRRSRSPRYSRSRSPRRSRSRTRSP 144
Score = 42 (19.8 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 723 QSESKDDSNSKGTGLTSSR-RGDLSSERIQGDSGEDDSAAREE----KKEANKSERSDRK 777
+S S S S+ + SR R S +R D+S +R +++ + ER R
Sbjct: 122 RSRSPRYSRSRSPRRSRSRTRSPPSRDRRDSPDRRDNSRSRSRSPPPREDGSPKERRSRS 181
Query: 778 KSPS 781
+S S
Sbjct: 182 RSAS 185
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 119 (46.9 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G L+ EQ L ++F +YG ++ + ++ D E R R GFV F N D + A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVV---KDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 258 KYLNGKDVQSYEMKL 272
+NGK V ++++
Sbjct: 65 MAMNGKSVDGRQIRV 79
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 141 (54.7 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 24/78 (30%), Positives = 49/78 (62%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ N + +++L E+FG++GP S+K+M +E + + GFV+F +D ++
Sbjct: 23 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 78
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ +NGK++ ++ +G
Sbjct: 79 AVDEMNGKELNGKQIYVG 96
>UNIPROTKB|G4NFS0 [details] [associations]
symbol:MGG_08741 "tRNA selenocysteine-associated protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 RefSeq:XP_003719244.1
EnsemblFungi:MGG_08741T0 GeneID:2679034 KEGG:mgr:MGG_08741
Uniprot:G4NFS0
Length = 415
Score = 137 (53.3 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 40/149 (26%), Positives = 64/149 (42%)
Query: 165 GVYSEEAEPPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLAS 224
G +A PP+ + F DP T +++G L+ +TE +L F +G +
Sbjct: 255 GYQQPQAPPPNTAFNNPMQPMNQFT--DPNNTTVFVGGLSGYVTEDELRSFFQGFGDITY 312
Query: 225 IKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVXXXXXX 284
+KI P G+ CGFV F++R E A+ + G + + ++L WG+S
Sbjct: 313 VKIP-P--------GKGCGFVQFVHRHAAEMAINQMQGYPIGNSRVRLSWGRSQNNSGVG 363
Query: 285 XXXXXKMLELTVPPPP---SGLPFNAQPA 310
PPPP G+P + PA
Sbjct: 364 TPYR------PAPPPPHWGGGMPPHGGPA 386
Score = 48 (22.0 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 297 PPPPSGLPFNAQP 309
PPPP GL + QP
Sbjct: 401 PPPPGGLQVSPQP 413
>UNIPROTKB|E1BQ47 [details] [associations]
symbol:RBM18 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:92400
GeneTree:ENSGT00390000013765 OMA:EAKLQMM EMBL:AADN02026362
IPI:IPI00574341 RefSeq:XP_415396.1 ProteinModelPortal:E1BQ47
Ensembl:ENSGALT00000002045 GeneID:417111 KEGG:gga:417111
NextBio:20820467 Uniprot:E1BQ47
Length = 190
Score = 129 (50.5 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 34/126 (26%), Positives = 65/126 (51%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++GNL+PKITE L+++ ++G + ++ +S + + R FV F +++ E+A+
Sbjct: 27 LWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEKAI 86
Query: 258 KYLNGKDVQSYEMKLGWGKSVXXXXXXXXXXXKMLELTVPPPPSGLP--FNAQPASKDKH 315
+ LNGK S ++ + W + K+L +++ P S P N ++K K
Sbjct: 87 QCLNGKLALSKKLVVRWAHA-QVKRYDHNKNEKILPISLEPSSSTEPPQSNLSVSAKIKA 145
Query: 316 RIPKLR 321
KL+
Sbjct: 146 IEAKLK 151
>UNIPROTKB|J9NUA3 [details] [associations]
symbol:RBM18 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:92400
GeneTree:ENSGT00390000013765 OMA:EAKLQMM EMBL:AAEX03006907
RefSeq:XP_548474.2 ProteinModelPortal:J9NUA3
Ensembl:ENSCAFT00000050112 GeneID:491353 KEGG:cfa:491353
Uniprot:J9NUA3
Length = 190
Score = 129 (50.5 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 32/121 (26%), Positives = 62/121 (51%)
Query: 184 TKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCG 243
++GS G L++GNL+PKITE L+++ ++G + ++ +S + + R
Sbjct: 17 SEGSLQEGH----RLWIGNLDPKITEYHLLKLLQKFGTVKQFDFLFHKSGALEGQPRGYC 72
Query: 244 FVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVXXXXXXXXXXXKMLELTVPPPPSGL 303
FV F +++ E+A++ LNGK S ++ + W + K+L +++ P S
Sbjct: 73 FVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHA-QVKRYDHNKNDKILPISLEPSSSTE 131
Query: 304 P 304
P
Sbjct: 132 P 132
>UNIPROTKB|Q96H35 [details] [associations]
symbol:RBM18 "Probable RNA-binding protein 18" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CH471090 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q7YZ92 EMBL:AL162424 CTD:92400 eggNOG:NOG75816
HOGENOM:HOG000231619 HOVERGEN:HBG057119 OMA:EAKLQMM
OrthoDB:EOG4MCX1D EMBL:AK057676 EMBL:BC008942 EMBL:BC019319
IPI:IPI00062751 RefSeq:NP_149108.1 UniGene:Hs.415842
ProteinModelPortal:Q96H35 SMR:Q96H35 IntAct:Q96H35
PhosphoSite:Q96H35 DMDM:74762658 PRIDE:Q96H35 DNASU:92400
Ensembl:ENST00000417201 GeneID:92400 KEGG:hsa:92400 UCSC:uc004bma.2
GeneCards:GC09M125001 HGNC:HGNC:28413 neXtProt:NX_Q96H35
PharmGKB:PA134928031 InParanoid:Q96H35 PhylomeDB:Q96H35
GenomeRNAi:92400 NextBio:77756 Bgee:Q96H35 CleanEx:HS_RBM18
Genevestigator:Q96H35 GermOnline:ENSG00000119446 Uniprot:Q96H35
Length = 190
Score = 129 (50.5 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 32/121 (26%), Positives = 62/121 (51%)
Query: 184 TKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCG 243
++GS G L++GNL+PKITE L+++ ++G + ++ +S + + R
Sbjct: 17 SEGSLQEGH----RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYC 72
Query: 244 FVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVXXXXXXXXXXXKMLELTVPPPPSGL 303
FV F +++ E+A++ LNGK S ++ + W + K+L +++ P S
Sbjct: 73 FVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHA-QVKRYDHNKNDKILPISLEPSSSTE 131
Query: 304 P 304
P
Sbjct: 132 P 132
>MGI|MGI:1915139 [details] [associations]
symbol:Rbm18 "RNA binding motif protein 18" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1915139 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q7YZ92 CTD:92400 eggNOG:NOG75816 GeneTree:ENSGT00390000013765
HOGENOM:HOG000231619 HOVERGEN:HBG057119 OMA:EAKLQMM
OrthoDB:EOG4MCX1D EMBL:AK008110 EMBL:AK021243 EMBL:AK035348
EMBL:AK036252 EMBL:BC005540 IPI:IPI00461136 RefSeq:NP_001153107.1
RefSeq:NP_080710.1 UniGene:Mm.205937 ProteinModelPortal:Q9CR83
SMR:Q9CR83 STRING:Q9CR83 PhosphoSite:Q9CR83 PRIDE:Q9CR83
DNASU:67889 Ensembl:ENSMUST00000028251 GeneID:67889 KEGG:mmu:67889
InParanoid:Q9CR83 NextBio:325854 Bgee:Q9CR83 CleanEx:MM_RBM18
Genevestigator:Q9CR83 GermOnline:ENSMUSG00000026889 Uniprot:Q9CR83
Length = 190
Score = 129 (50.5 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 32/121 (26%), Positives = 62/121 (51%)
Query: 184 TKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCG 243
++GS G L++GNL+PKITE L+++ ++G + ++ +S + + R
Sbjct: 17 SEGSLQEGH----RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYC 72
Query: 244 FVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVXXXXXXXXXXXKMLELTVPPPPSGL 303
FV F +++ E+A++ LNGK S ++ + W + K+L +++ P S
Sbjct: 73 FVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHA-QVKRYDHNKNDKILPISLEPSSSTE 131
Query: 304 P 304
P
Sbjct: 132 P 132
>FB|FBgn0261872 [details] [associations]
symbol:scaf6 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS;NAS]
[GO:0005681 "spliceosomal complex" evidence=ISS;NAS] [GO:0003729
"mRNA binding" evidence=ISS;NAS] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 EMBL:AE014296
GO:GO:0003723 GO:GO:0006396 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 KO:K12841 InterPro:IPR006903 InterPro:IPR006569
Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
GeneTree:ENSGT00600000084415 OMA:FEGPWNS FlyBase:FBgn0261872
GenomeRNAi:3346235 NextBio:849268 EMBL:BT031129
RefSeq:NP_001014589.1 UniGene:Dm.3754 SMR:Q59E33 STRING:Q59E33
EnsemblMetazoa:FBtr0091474 GeneID:3346235 KEGG:dme:Dmel_CG33522
UCSC:CG33522-RA CTD:3346235 OrthoDB:EOG4FN2ZV Uniprot:Q59E33
Length = 960
Score = 102 (41.0 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 348 PTDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKM 403
P D +L +I ++ EFV R GP FEA+ K+ +NP + FL+ + A+ YY++++
Sbjct: 6 PRDASLRNIIDKLAEFVARNGPEFEAITKQKQQNNPKFEFLYGGEF-AN-YYQFRV 59
Score = 72 (30.4 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
Identities = 23/90 (25%), Positives = 50/90 (55%)
Query: 466 LEDFLRNLTPERVKVAEAMVFCMEHS-DAAE--EICECIME-SLSNESTALHKKIGRLYL 521
L+ + + T + + + + ++HS D+A+ + + +++ +L N ST +K+ +YL
Sbjct: 220 LQPIIESCTKDSISAGKNWI--LQHSTDSAKINVVLQYLLKKALVNGST-FQQKLHLIYL 276
Query: 522 VSDILHNCGIKISNASFYRRGFESRLFQIF 551
V+DILH+C K N + + E+ + +F
Sbjct: 277 VNDILHHCMRK--NINDLKNSLENVVIPMF 304
Score = 67 (28.6 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 759 SAAREEKKEANKSERSDRKKSPSPAAREEKKEANKSERSDRKKSPS 804
+AAR++K+E K ++ +SPSP E+ ++R R KS S
Sbjct: 726 NAARKQKEEEIKDGIREKSRSPSPIVLEKPLPKKSNKRVYRSKSRS 771
Score = 53 (23.7 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 783 AAREEKKEANKSERSDRKKSPSPV 806
AAR++K+E K ++ +SPSP+
Sbjct: 727 AARKQKEEEIKDGIREKSRSPSPI 750
Score = 48 (22.0 bits), Expect = 0.00031, Sum P(3) = 0.00031
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 769 NKSERSDRKKSPSPAAREEKKEANKSERSDRKKSPSPV 806
+KS R K+P R + ++S +R +P P+
Sbjct: 767 SKSRSRSRSKTPPHRDRSLSRSRSRSRSMERSLTPPPM 804
Score = 47 (21.6 bits), Expect = 0.00039, Sum P(3) = 0.00039
Identities = 19/81 (23%), Positives = 34/81 (41%)
Query: 700 SKWETVEENEDSAVTS-SKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDD 758
S+ +T + S S S+ +E+S + N G ++R+G S R + D+
Sbjct: 773 SRSKTPPHRDRSLSRSRSRSRSMERSLTPPPMNRSRLGGGNNRKGRNRSPRHERDNNSGS 832
Query: 759 SAAREEKKEANKSERSDRKKS 779
+ RE + + S D S
Sbjct: 833 TNTREGRGDRGNSNSRDNGNS 853
Score = 45 (20.9 bits), Expect = 0.00062, Sum P(3) = 0.00062
Identities = 16/65 (24%), Positives = 25/65 (38%)
Query: 739 SSRRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKKSPSPAAREEKKEANKSERSD 798
S++R S R + S R + ++S +R +P P R N R
Sbjct: 760 SNKRVYRSKSRSRSRSKTPPHRDRSLSRSRSRSRSMERSLTPPPMNRSRLGGGNN--RKG 817
Query: 799 RKKSP 803
R +SP
Sbjct: 818 RNRSP 822
>TAIR|locus:2018794 [details] [associations]
symbol:UBP1B "oligouridylate binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007843 HSSP:P33240
HOGENOM:HOG000206748 KO:K13201 OMA:NGSKQLR ProtClustDB:CLSN2682164
EMBL:AY085705 EMBL:BT026477 IPI:IPI00543090 RefSeq:NP_564018.1
UniGene:At.43816 ProteinModelPortal:Q9LQI9 SMR:Q9LQI9 STRING:Q9LQI9
PRIDE:Q9LQI9 EnsemblPlants:AT1G17370.1 GeneID:838309
KEGG:ath:AT1G17370 TAIR:At1g17370 InParanoid:Q9LQI9
PhylomeDB:Q9LQI9 Genevestigator:Q9LQI9 Uniprot:Q9LQI9
Length = 419
Score = 140 (54.3 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 29/101 (28%), Positives = 54/101 (53%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
N+++G+L+P++T+ L F Y + ++MW D++ R R GFV+F N++D + A
Sbjct: 140 NIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMW---DQKTGRSRGFGFVSFRNQQDAQTA 196
Query: 257 LKYLNGKDVQSYEMKLGWG-KSVXXXXXXXXXXXK-MLELT 295
+ + GK + S +++ W K K ++ELT
Sbjct: 197 IDEITGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELT 237
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 115 (45.5 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G LN + E L + F +YG ++ + ++ D E R R GFV F N D + A+
Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVV---KDRETKRSRGFGFVTFENVDDAKDAM 63
Query: 258 KYLNGKDVQSYEMKLGW-GKS 277
+NGK V ++++ GKS
Sbjct: 64 MAMNGKSVDGRQIRVDQAGKS 84
Score = 44 (20.5 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 726 SKDDSNSKGTGLTSSRRGDLSSERIQGDSGE 756
S+ D+ S G G +S R S R QG G+
Sbjct: 119 SRFDNRSGGYGGSSGSRDYYGSGRSQGSYGD 149
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 142 (55.0 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 25/78 (32%), Positives = 48/78 (61%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ NL + +++L ++F R+GP S+K+M +E + + GFV+F +D +
Sbjct: 191 TNVYIKNLGEDMDDERLQDLFSRFGPALSVKVM----TDESGKSKGFGFVSFERHEDARK 246
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ +NGKD+ ++ +G
Sbjct: 247 AVDEMNGKDLNGKQIYVG 264
>UNIPROTKB|F1NIR6 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0005846 "nuclear cap binding complex" evidence=IEA] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 PANTHER:PTHR18847
GeneTree:ENSGT00390000003197 OMA:RQDYDPA EMBL:AADN02020536
IPI:IPI00597191 ProteinModelPortal:F1NIR6
Ensembl:ENSGALT00000011075 Uniprot:F1NIR6
Length = 158
Score = 117 (46.2 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGF--VAFMNRK 251
CT LY+GNL+ TE+Q+ E+FG+ G + I IM +K + CGF V + R
Sbjct: 42 CT--LYVGNLSFYTTEEQIHELFGKSGDIKKI-IM----GLDKVKKTACGFCFVEYYARG 94
Query: 252 DGERALKYLNGKDVQSYEMKLGW 274
D E A++Y+NG + ++ W
Sbjct: 95 DAENAMRYINGTRLDDRIIRTDW 117
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 141 (54.7 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 24/78 (30%), Positives = 49/78 (62%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ N + +++L E+FG++GP S+K+M +E + + GFV+F +D ++
Sbjct: 127 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 182
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ +NGK++ ++ +G
Sbjct: 183 AVDEMNGKELNGKQIYVG 200
>UNIPROTKB|Q3ZCC5 [details] [associations]
symbol:RBM18 "Probable RNA-binding protein 18" species:9913
"Bos taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q9Y6M1
EMBL:BC102518 IPI:IPI00716541 RefSeq:NP_001029496.1
UniGene:Bt.52505 ProteinModelPortal:Q3ZCC5
Ensembl:ENSBTAT00000021769 GeneID:508615 KEGG:bta:508615 CTD:92400
eggNOG:NOG75816 GeneTree:ENSGT00390000013765 HOGENOM:HOG000231619
HOVERGEN:HBG057119 InParanoid:Q3ZCC5 OMA:EAKLQMM OrthoDB:EOG4MCX1D
NextBio:20868601 Uniprot:Q3ZCC5
Length = 190
Score = 128 (50.1 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 32/121 (26%), Positives = 61/121 (50%)
Query: 184 TKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCG 243
++GS G L++GNL+PKITE L+ + ++G + ++ +S + + R
Sbjct: 17 SEGSLQEGH----RLWIGNLDPKITEYHLLRLLQKFGTVKQFDFLFHKSGALEGQPRGYC 72
Query: 244 FVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVXXXXXXXXXXXKMLELTVPPPPSGL 303
FV F +++ E+A++ LNGK S ++ + W + K+L +++ P S
Sbjct: 73 FVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHA-QVKRYDHNKNDKILPISLEPSSSTE 131
Query: 304 P 304
P
Sbjct: 132 P 132
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 141 (54.7 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 24/78 (30%), Positives = 49/78 (62%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ N + +++L E+FG++GP S+K+M +E + + GFV+F +D ++
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ +NGK++ ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 141 (54.7 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 24/78 (30%), Positives = 49/78 (62%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ N + +++L E+FG++GP S+K+M +E + + GFV+F +D ++
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ +NGK++ ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
>UNIPROTKB|F1SLQ8 [details] [associations]
symbol:RBM18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:92400
GeneTree:ENSGT00390000013765 OMA:EAKLQMM EMBL:CU041257
RefSeq:XP_001925831.1 RefSeq:XP_001925851.1 UniGene:Ssc.14096
ProteinModelPortal:F1SLQ8 Ensembl:ENSSSCT00000029013
GeneID:100154045 KEGG:ssc:100154045 Uniprot:F1SLQ8
Length = 190
Score = 127 (49.8 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 32/121 (26%), Positives = 61/121 (50%)
Query: 184 TKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCG 243
++GS G L++GNL+PKITE L+++ ++G + ++ +S + + R
Sbjct: 17 SEGSLQEGH----RLWIGNLDPKITEYHLLKLLQKFGTVKQFDFLFHKSGALEGQPRGYC 72
Query: 244 FVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVXXXXXXXXXXXKMLELTVPPPPSGL 303
FV F +++ E+A+ LNGK S ++ + W + K+L +++ P S
Sbjct: 73 FVNFETKQEAEQAIHCLNGKLALSKKLVVRWAHA-QVKRYDHNKNDKILPISLEPSSSTE 131
Query: 304 P 304
P
Sbjct: 132 P 132
>MGI|MGI:1891706 [details] [associations]
symbol:Spen "SPEN homolog, transcriptional regulator
(Drosophila)" species:10090 "Mus musculus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001085 "RNA polymerase II transcription factor binding"
evidence=ISO] [GO:0001191 "RNA polymerase II transcription factor
binding transcription factor activity involved in negative
regulation of transcription" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003714 "transcription corepressor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007219 "Notch signaling pathway" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0050769 "positive
regulation of neurogenesis" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1891706 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007219
GO:GO:0003700 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
eggNOG:NOG12793 InterPro:IPR012921 Pfam:PF07744 PROSITE:PS50917
Gene3D:2.40.290.10 InterPro:IPR016194 SUPFAM:SSF100939 CTD:23013
HOGENOM:HOG000231295 HOVERGEN:HBG045583 OrthoDB:EOG4JM7NS
ChiTaRS:SPEN InterPro:IPR010912 EMBL:BY726481 EMBL:AF156529
EMBL:AB055980 EMBL:Z78160 EMBL:AK122402 IPI:IPI00378158
IPI:IPI00378159 IPI:IPI00605780 RefSeq:NP_062737.2
UniGene:Mm.299906 ProteinModelPortal:Q62504 SMR:Q62504
STRING:Q62504 PhosphoSite:Q62504 PaxDb:Q62504 PRIDE:Q62504
GeneID:56381 KEGG:mmu:56381 NextBio:312464 Genevestigator:Q62504
GermOnline:ENSMUSG00000040761 Uniprot:Q62504
Length = 3644
Score = 108 (43.1 bits), Expect = 8.1e-06, Sum P(2) = 8.1e-06
Identities = 54/216 (25%), Positives = 88/216 (40%)
Query: 607 PLDANNGNEEDEDLDGAPLSDVDGEDLDGVPL-DGAALMKSLQRLP-----HSSSAPDED 660
P A++ E+ E+ AP S + + P+ + L+ +P S P ED
Sbjct: 1664 PEPASSAPEKAEEAAEAP-SPAGEKPAEPAPVSEETKLVSEPVSVPVEQPRQSDVPPGED 1722
Query: 661 DIDGVPCTYNITSATMDGEDLDGVPMDKVKPARAATFIPSKWETVEENEDSAVTSSKW-- 718
D SA + D VP +P T + +V+ S SK
Sbjct: 1723 SRDSQDSAALAPSAPQESAATDAVPCVNAEPLTPGTTVSQVESSVDPKPSSPQPLSKLTQ 1782
Query: 719 --DDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSA----AREEKKEANKSE 772
++ E+ + + + T +++ ++SE Q + ED A A +++K NKS+
Sbjct: 1783 RSEEAEEGKVEKPDTTPSTEPDATQNAGVASEA-QPPASEDVEANPPVAAKDRK-TNKSK 1840
Query: 773 RSDRKKSPSPAAREEKKEANKSERSDR---KKSPSP 805
RS + A+ EK KSER DR K+S SP
Sbjct: 1841 RSKTSVQAAAASVVEKPVTRKSERIDREKLKRSSSP 1876
Score = 97 (39.2 bits), Expect = 8.1e-06, Sum P(2) = 8.1e-06
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGE 254
T +L++GNL + E++++E F RYG + S+KI+ R E G FV F++ K +
Sbjct: 5 TRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSE----GGVAAFVDFVDIKSAQ 60
Query: 255 RALKYLN 261
+A +N
Sbjct: 61 KAHNSVN 67
Score = 88 (36.0 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARG-RNCGFVAFMNRKDG 253
T L++GNL T L IF R+G + I I +K G F+ + +
Sbjct: 438 TRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDI-------KKVNGVPQYAFLQYCDIASV 490
Query: 254 ERALKYLNGKDVQSYEMKLGWGKSV 278
+A+K ++G+ + + +KLG+GKS+
Sbjct: 491 CKAIKKMDGEYLGNNRLKLGFGKSM 515
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 138 (53.6 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRK 251
+P LY+G L+P++TE L +IF G + S+KI+ ++ K G N GFV F +
Sbjct: 86 EPNKRALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSK--GANYGFVEFDDPG 143
Query: 252 DGERALKYLNGKDVQSYEMKLGW 274
ERA++ LNG+ + E+++ W
Sbjct: 144 AAERAMQTLNGRRIHQSEIRVNW 166
Score = 137 (53.3 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 31/123 (25%), Positives = 60/123 (48%)
Query: 180 YQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARG 239
YQ T D+ + ++++G+L+ ++ ++ L++ F +G ++ ++MW D + R
Sbjct: 168 YQSNTANKEDTSNHF--HIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMW---DMKTGRS 222
Query: 240 RNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVXXXXXXXXXXXKMLELTVPPP 299
R GFVAF R D E+AL ++G+ + S ++ W + +T P
Sbjct: 223 RGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWANQKGQPSISQQQAMAAMGMT-PTT 281
Query: 300 PSG 302
P G
Sbjct: 282 PFG 284
>UNIPROTKB|Q3ZBJ1 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9913 "Bos taurus" [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0046833
"positive regulation of RNA export from nucleus" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISS]
[GO:0005845 "mRNA cap binding complex" evidence=ISS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=ISS] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0031047 "gene silencing by RNA"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 HOVERGEN:HBG052581 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 EMBL:BC103267 IPI:IPI00687118
RefSeq:NP_001029568.1 UniGene:Bt.49382 ProteinModelPortal:Q3ZBJ1
SMR:Q3ZBJ1 STRING:Q3ZBJ1 PRIDE:Q3ZBJ1 Ensembl:ENSBTAT00000011684
GeneID:510872 KEGG:bta:510872 CTD:22916
GeneTree:ENSGT00390000003197 InParanoid:Q3ZBJ1 OMA:RQDYDPA
NextBio:20869659 GO:GO:0046833 GO:GO:0006408 Uniprot:Q3ZBJ1
Length = 156
Score = 115 (45.5 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGF--VAFMNRK 251
CT LY+GNL+ TE+Q+ E+F + G + I IM +K + CGF V + +R
Sbjct: 40 CT--LYVGNLSFYTTEEQIYELFSKSGDIKKI-IM----GLDKMKKTACGFCFVEYYSRA 92
Query: 252 DGERALKYLNGKDVQSYEMKLGW 274
D E A++Y+NG + ++ W
Sbjct: 93 DAENAMRYINGTRLDDRIIRTDW 115
>UNIPROTKB|E2RFC9 [details] [associations]
symbol:NCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0006370 "7-methylguanosine mRNA capping"
evidence=IEA] [GO:0005845 "mRNA cap binding complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0000340 "RNA 7-methylguanosine cap binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0005846
"nuclear cap binding complex" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
GO:GO:0006446 Gene3D:3.30.70.330 GO:GO:0005845 GO:GO:0000340
GO:GO:0006370 PANTHER:PTHR18847 KO:K12883 CTD:22916
GeneTree:ENSGT00390000003197 OMA:RQDYDPA EMBL:AAEX03017103
RefSeq:XP_535779.1 ProteinModelPortal:E2RFC9 SMR:E2RFC9
PRIDE:E2RFC9 Ensembl:ENSCAFT00000020794 GeneID:478603
KEGG:cfa:478603 NextBio:20853918 Uniprot:E2RFC9
Length = 156
Score = 115 (45.5 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGF--VAFMNRK 251
CT LY+GNL+ TE+Q+ E+F + G + I IM +K + CGF V + +R
Sbjct: 40 CT--LYVGNLSFYTTEEQIYELFSKSGDIKKI-IM----GLDKMKKTACGFCFVEYYSRA 92
Query: 252 DGERALKYLNGKDVQSYEMKLGW 274
D E A++Y+NG + ++ W
Sbjct: 93 DAENAMRYINGTRLDDRIIRTDW 115
>UNIPROTKB|H0YAP2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519622
Uniprot:H0YAP2
Length = 131
Score = 115 (45.5 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 19/65 (29%), Positives = 42/65 (64%)
Query: 209 EQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSY 268
+++L ++FG++GP S+K+M +E + + GFV+F +D ++A+ +NGK++
Sbjct: 2 DERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 57
Query: 269 EMKLG 273
++ +G
Sbjct: 58 QIYVG 62
>UNIPROTKB|P52298 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0006408 "snRNA export
from nucleus" evidence=ISS;NAS] [GO:0000340 "RNA 7-methylguanosine
cap binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IMP;IDA;TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IDA;TAS] [GO:0005845
"mRNA cap binding complex" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0006446 "regulation of translational
initiation" evidence=IDA] [GO:0046833 "positive regulation of RNA
export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0000339 "RNA cap
binding" evidence=NAS] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IDA] [GO:0000387 "spliceosomal snRNP
assembly" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0034660 "ncRNA metabolic process" evidence=TAS]
[GO:0050434 "positive regulation of viral transcription"
evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0016032 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006368 GO:GO:0006406
GO:GO:0031047 GO:GO:0005845 GO:GO:0000340 GO:GO:0000387
GO:GO:0034660 EMBL:CH471191 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0006370 GO:GO:0050434 GO:GO:0045292 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 PDB:3FEX PDB:3FEY PDBsum:3FEX
PDBsum:3FEY GO:GO:0008334 HOGENOM:HOG000217589 HOVERGEN:HBG052581
PANTHER:PTHR18847 PDB:1H2T PDB:1H2U PDB:1H2V PDB:1H6K PDB:1N52
PDB:1N54 PDBsum:1H2T PDBsum:1H2U PDBsum:1H2V PDBsum:1H6K
PDBsum:1N52 PDBsum:1N54 KO:K12883 CTD:22916 OMA:RQDYDPA
GO:GO:0046833 GO:GO:0006408 EMBL:X84157 EMBL:D59253 EMBL:AK297506
EMBL:AK315903 EMBL:AK316601 EMBL:AY644767 EMBL:BT006842
EMBL:BC001255 IPI:IPI00183500 IPI:IPI00927860 PIR:I37222 PIR:S60109
RefSeq:NP_001036005.1 RefSeq:NP_031388.2 UniGene:Hs.591671
DisProt:DP00393 ProteinModelPortal:P52298 SMR:P52298 DIP:DIP-33246N
IntAct:P52298 MINT:MINT-248711 STRING:P52298 PhosphoSite:P52298
DMDM:1705651 PaxDb:P52298 PRIDE:P52298 DNASU:22916
Ensembl:ENST00000321256 Ensembl:ENST00000452404 GeneID:22916
KEGG:hsa:22916 UCSC:uc003fxb.1 UCSC:uc011btz.1
GeneCards:GC03M196662 HGNC:HGNC:7659 HPA:HPA044850 MIM:605133
neXtProt:NX_P52298 PharmGKB:PA31462 InParanoid:P52298
PhylomeDB:P52298 ChiTaRS:NCBP2 EvolutionaryTrace:P52298
GenomeRNAi:22916 NextBio:43603 ArrayExpress:P52298 Bgee:P52298
CleanEx:HS_NCBP2 Genevestigator:P52298 GermOnline:ENSG00000114503
Uniprot:P52298
Length = 156
Score = 115 (45.5 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGF--VAFMNRK 251
CT LY+GNL+ TE+Q+ E+F + G + I IM +K + CGF V + +R
Sbjct: 40 CT--LYVGNLSFYTTEEQIYELFSKSGDIKKI-IM----GLDKMKKTACGFCFVEYYSRA 92
Query: 252 DGERALKYLNGKDVQSYEMKLGW 274
D E A++Y+NG + ++ W
Sbjct: 93 DAENAMRYINGTRLDDRIIRTDW 115
>UNIPROTKB|F2Z5Q9 [details] [associations]
symbol:NCBP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
PANTHER:PTHR18847 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:RQDYDPA EMBL:CU862047 RefSeq:XP_003358812.2 UniGene:Ssc.56609
ProteinModelPortal:F2Z5Q9 SMR:F2Z5Q9 PRIDE:F2Z5Q9
Ensembl:ENSSSCT00000024784 GeneID:100156513 KEGG:ssc:100156513
Uniprot:F2Z5Q9
Length = 156
Score = 115 (45.5 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGF--VAFMNRK 251
CT LY+GNL+ TE+Q+ E+F + G + I IM +K + CGF V + +R
Sbjct: 40 CT--LYVGNLSFYTTEEQIYELFSKSGDIKKI-IM----GLDKMKKTACGFCFVEYYSRA 92
Query: 252 DGERALKYLNGKDVQSYEMKLGW 274
D E A++Y+NG + ++ W
Sbjct: 93 DAENAMRYINGTRLDDRIIRTDW 115
>MGI|MGI:1915342 [details] [associations]
symbol:Ncbp2 "nuclear cap binding protein subunit 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=ISO] [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005845
"mRNA cap binding complex" evidence=ISO] [GO:0006370
"7-methylguanosine mRNA capping" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0031047 "gene silencing by RNA"
evidence=IEA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1915342
GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
GO:GO:0006446 Gene3D:3.30.70.330 EMBL:CH466521 GO:GO:0031047
GO:GO:0005845 GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724
GO:GO:0006370 GO:GO:0045292 HOGENOM:HOG000217589 HOVERGEN:HBG052581
OrthoDB:EOG470TJG PANTHER:PTHR18847 KO:K12883 CTD:22916
GeneTree:ENSGT00390000003197 OMA:RQDYDPA GO:GO:0046833
GO:GO:0006408 EMBL:AK008980 EMBL:AK012659 EMBL:AK077841
EMBL:AK147027 EMBL:BC118926 IPI:IPI00132019 RefSeq:NP_080830.1
UniGene:Mm.290027 ProteinModelPortal:Q9CQ49 SMR:Q9CQ49
STRING:Q9CQ49 PhosphoSite:Q9CQ49 PaxDb:Q9CQ49 PRIDE:Q9CQ49
Ensembl:ENSMUST00000023460 GeneID:68092 KEGG:mmu:68092
UCSC:uc007yxz.2 InParanoid:Q0VF93 NextBio:326400 Bgee:Q9CQ49
CleanEx:MM_NCBP2 Genevestigator:Q9CQ49
GermOnline:ENSMUSG00000022774 Uniprot:Q9CQ49
Length = 156
Score = 115 (45.5 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGF--VAFMNRK 251
CT LY+GNL+ TE+Q+ E+F + G + I IM +K + CGF V + +R
Sbjct: 40 CT--LYVGNLSFYTTEEQIYELFSKSGDIKKI-IM----GLDKMKKTACGFCFVEYYSRA 92
Query: 252 DGERALKYLNGKDVQSYEMKLGW 274
D E A++Y+NG + ++ W
Sbjct: 93 DAENAMRYINGTRLDDRIIRTDW 115
>RGD|1596188 [details] [associations]
symbol:Ncbp2 "nuclear cap binding protein subunit 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA;ISO] [GO:0000340
"RNA 7-methylguanosine cap binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005845 "mRNA cap
binding complex" evidence=ISO] [GO:0005846 "nuclear cap binding
complex" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA capping"
evidence=IEA;ISO] [GO:0006408 "snRNA export from nucleus"
evidence=ISS] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0006446 "regulation of translational initiation" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO;ISS] [GO:0046833 "positive regulation of
RNA export from nucleus" evidence=ISS] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1596188 GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
GO:GO:0006446 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845
GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370
GO:GO:0045292 HOGENOM:HOG000217589 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 GeneTree:ENSGT00390000003197
OMA:RQDYDPA GO:GO:0046833 GO:GO:0006408 EMBL:BC161994
IPI:IPI00192753 RefSeq:NP_001102995.1 RefSeq:XP_003751123.1
UniGene:Rn.204538 ProteinModelPortal:B1WC40 SMR:B1WC40
STRING:B1WC40 PhosphoSite:B1WC40 PRIDE:B1WC40
Ensembl:ENSRNOT00000002381 GeneID:100911481 GeneID:689116
KEGG:rno:100911481 KEGG:rno:689116 UCSC:RGD:1596188 CTD:80235
NextBio:737969 Genevestigator:B1WC40 Uniprot:B1WC40
Length = 156
Score = 115 (45.5 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGF--VAFMNRK 251
CT LY+GNL+ TE+Q+ E+F + G + I IM +K + CGF V + +R
Sbjct: 40 CT--LYVGNLSFYTTEEQIYELFSKSGDIKKI-IM----GLDKMKKTACGFCFVEYYSRA 92
Query: 252 DGERALKYLNGKDVQSYEMKLGW 274
D E A++Y+NG + ++ W
Sbjct: 93 DAENAMRYINGTRLDDRIIRTDW 115
>ZFIN|ZDB-GENE-040407-1 [details] [associations]
symbol:cherp "calcium homeostasis endoplasmic
reticulum protein" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 ZFIN:ZDB-GENE-040407-1
GO:GO:0003723 GO:GO:0006396 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 HOGENOM:HOG000010294 HOVERGEN:HBG052716
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SUPFAM:SSF109905
PROSITE:PS51391 EMBL:BC171627 IPI:IPI00490676 UniGene:Dr.75231
ArrayExpress:B7ZVL5 Bgee:B7ZVL5 Uniprot:B7ZVL5
Length = 910
Score = 102 (41.0 bits), Expect = 8.7e-06, Sum P(3) = 8.7e-06
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 348 PTDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSIL 407
P D+ L +I ++ +FV R GP FE M M K+ N + FLF + YY++K+ +
Sbjct: 7 PEDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNAKFSFLFGGEFFG--YYKYKL--AI 62
Query: 408 QGDQPKEWRTNEFRM 422
+ Q +E+ M
Sbjct: 63 EQQQHSGTHDDEYNM 77
Score = 70 (29.7 bits), Expect = 8.7e-06, Sum P(3) = 8.7e-06
Identities = 28/100 (28%), Positives = 43/100 (43%)
Query: 706 EENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEK 765
E+++ S+ S+ S + S+S SSR S R + S S +R +
Sbjct: 711 EQDKRSSARGSRSRSRSHSRGRSSSHSSSRSSKSSRSRSRSRSRSRSRS-YSRSRSRSQS 769
Query: 766 KEANKSERSDRKKSPSPAAREEKK-EANKSERSDRKKSPS 804
+ ++S R KS S + EK+ A KS RS S S
Sbjct: 770 RSRSRSGSRSRSKSRSRSRSPEKRPHATKS-RSPTPPSTS 808
Score = 65 (27.9 bits), Expect = 8.7e-06, Sum P(3) = 8.7e-06
Identities = 29/110 (26%), Positives = 56/110 (50%)
Query: 498 CECIMESLSNESTA--LH--KKIGRLYLVSDILHNCGIKISNASFYRRGFESRLFQIFTE 553
CE + L N TA H ++ +YL +D+LH+C K N ++ + L ++
Sbjct: 195 CELMASHLRNRITADEAHFELRLHLIYLTNDVLHHCQRK--N----QKDLLAALQKVVVP 248
Query: 554 MHIT-YVNLESRLKAEGLRTRVMQVFRAWEDWAVYPKDYLIKLQNVFLGL 602
++ T ++++E K + + TR++Q+ WE + + +LQ+ LGL
Sbjct: 249 IYCTSFLSVEED-KQQKI-TRLLQL---WEKNGYFDDVTIQQLQSPALGL 293
Score = 62 (26.9 bits), Expect = 5.4e-05, Sum P(3) = 5.4e-05
Identities = 23/85 (27%), Positives = 34/85 (40%)
Query: 725 ESKDDSNSKGTGLTS-SR---RGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKKSP 780
+ + D S G S SR RG SS S S +R + ++S R +S
Sbjct: 709 KKEQDKRSSARGSRSRSRSHSRGRSSSHSSSRSSKSSRSRSRSRSRSRSRSYSRSRSRSQ 768
Query: 781 SPAAREEKKEANKSERSDRKKSPSP 805
S R + ++S R +S SP
Sbjct: 769 S---RSRSRSGSRSRSKSRSRSRSP 790
>DICTYBASE|DDB_G0291444 [details] [associations]
symbol:DDB_G0291444 species:44689 "Dictyostelium
discoideum" [GO:0044351 "macropinocytosis" evidence=RCA]
dictyBase:DDB_G0291444 Pfam:PF05022 EMBL:AAFI02000177
InterPro:IPR007718 RefSeq:XP_635213.1 STRING:Q54EM7
EnsemblProtists:DDB0183896 GeneID:8628159 KEGG:ddi:DDB_G0291444
eggNOG:NOG140707 InParanoid:Q54EM7 OMA:TICEESS Uniprot:Q54EM7
Length = 447
Score = 116 (45.9 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 32/100 (32%), Positives = 54/100 (54%)
Query: 707 ENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGED-DSAAREEK 765
E+ DS+ + S+ D SES+D+ K SS SS DS + DS + +EK
Sbjct: 198 ESSDSSSSESESSDSSDSESEDEKKKKVESSDSSSSESESSSSSSSDSSDSSDSESEDEK 257
Query: 766 KEANKSERSDRKKSPSPAAREE---KKEANKSERSDRKKS 802
K+ K E+S K++ S + E+ +K+ KS++ D+K++
Sbjct: 258 KK--KVEKSSDKETSSESESEDSDDEKDKKKSKKEDKKEN 295
Score = 68 (29.0 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 30/120 (25%), Positives = 46/120 (38%)
Query: 79 RRREDTSEKGKLYKPQSRLQE----DKDSSASKAEEYARLLGDKKTESQRLXXXXXXXXX 134
+ E +S+K K+ K S + + DSS S+ E+ + DKKTE
Sbjct: 67 KEEEKSSKKHKVEKDSSDSSDSSDSESDSSDSEDEKEKEMKVDKKTEDSSSSSESDTESS 126
Query: 135 XXSNLEMFKEELKMIQEEREERHKYKGVLKGVYSEEAEPPSAIAIYQEETKG--SFDSGD 192
S E K++ K + + SE +E S+ E+ K S DS D
Sbjct: 127 SSSESEDEKKKEKESDDSSSSESESDSSSSESESESSESSSSSESESEDEKKKESSDSSD 186
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 122 (48.0 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G L+ EQ L ++F +YG ++ + ++ D E R R GFV F N D + A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVV---KDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 258 KYLNGKDVQSYEMKLGW-GKS 277
+NGK V ++++ GKS
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKS 85
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 122 (48.0 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G L+ EQ L ++F +YG ++ + ++ D E R R GFV F N D + A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVV---KDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 258 KYLNGKDVQSYEMKLGW-GKS 277
+NGK V ++++ GKS
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKS 85
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 122 (48.0 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G L+ EQ L ++F +YG ++ + ++ D E R R GFV F N D + A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVV---KDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 258 KYLNGKDVQSYEMKLGW-GKS 277
+NGK V ++++ GKS
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKS 85
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 122 (48.0 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G L+ EQ L ++F +YG ++ + ++ D E R R GFV F N D + A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVV---KDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 258 KYLNGKDVQSYEMKLGW-GKS 277
+NGK V ++++ GKS
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKS 85
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 139 (54.0 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 28/78 (35%), Positives = 49/78 (62%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ N + +++L EIF +YGP SI++M D K++G GFV+F +D +R
Sbjct: 191 TNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVM--TDDSGKSKG--FGFVSFERHEDAQR 246
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ +NGK++ ++ +G
Sbjct: 247 AVDEMNGKEMNGKQVYVG 264
>UNIPROTKB|Q8NDT2 [details] [associations]
symbol:RBM15B "Putative RNA-binding protein 15B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0019048 "virus-host
interaction" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0006913
"nucleocytoplasmic transport" evidence=IDA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0005654 "nucleoplasm" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0019048 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 InterPro:IPR012921
Pfam:PF07744 GO:GO:0000381 eggNOG:NOG250829 PROSITE:PS50917
Gene3D:2.40.290.10 InterPro:IPR016194 SUPFAM:SSF100939
EMBL:AC092037 InterPro:IPR010912 EMBL:AL831838 EMBL:BC001367
EMBL:AY545557 IPI:IPI00175136 RefSeq:NP_037418.3 UniGene:Hs.118738
UniGene:Hs.731737 ProteinModelPortal:Q8NDT2 SMR:Q8NDT2
IntAct:Q8NDT2 STRING:Q8NDT2 PhosphoSite:Q8NDT2 DMDM:229463030
PaxDb:Q8NDT2 PeptideAtlas:Q8NDT2 PRIDE:Q8NDT2 DNASU:29890
Ensembl:ENST00000323686 Ensembl:ENST00000563281 GeneID:29890
KEGG:hsa:29890 UCSC:uc003dbd.3 CTD:29890 GeneCards:GC03P051428
HGNC:HGNC:24303 HPA:HPA036645 MIM:612602 neXtProt:NX_Q8NDT2
PharmGKB:PA134870079 HOGENOM:HOG000006547 HOVERGEN:HBG058366
InParanoid:Q8NDT2 KO:K13190 OMA:KRDSERN OrthoDB:EOG42RD6Z
GenomeRNAi:29890 NextBio:52441 ArrayExpress:Q8NDT2 Bgee:Q8NDT2
CleanEx:HS_RBM15B Genevestigator:Q8NDT2 GermOnline:ENSG00000179837
Uniprot:Q8NDT2
Length = 890
Score = 120 (47.3 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 30/113 (26%), Positives = 55/113 (48%)
Query: 165 GVYSEEAEPPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLAS 224
G+Y + P A+ +E+ D T NL++GNL+ ++E +L F +YG +
Sbjct: 308 GLYDDRGRPYGYPAVCEEDLMPEDDQR--ATRNLFIGNLDHSVSEVELRRAFEKYGIIEE 365
Query: 225 IKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKS 277
+ I P + +G F+ F N RA ++G+ + +K+G+GK+
Sbjct: 366 VVIKRPA----RGQGGAYAFLKFQNLDMAHRAKVAMSGRVIGRNPIKIGYGKA 414
Score = 75 (31.5 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 26/113 (23%), Positives = 44/113 (38%)
Query: 698 IPSKWETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGED 757
+P WE E + +++S + S ++ S +KG+G S R D + ER + ++
Sbjct: 586 LPKPWE--ERRKRRSLSSDR-GRTTHSPYEERSRTKGSGQQSERGSDRTPERSRKENHSS 642
Query: 758 DSAAREEKKEANKS-----ERSDRKKSPSPAAREEKKEANKSERSDRKKSPSP 805
+ + S ER A K+A SER+ R P
Sbjct: 643 EGTKESSSNSLSNSRHGAEERGHHHHHHEAADSSHGKKARDSERNHRTTEAEP 695
Score = 64 (27.6 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 28/100 (28%), Positives = 42/100 (42%)
Query: 700 SKWETVEENEDSAVTSSKWDDVEQSES-KDDSNSKGTGLTSSRRGDLSSERIQGDS-GED 757
S +E + S S + D S K++ +S+GT +SS LS+ R + G
Sbjct: 609 SPYEERSRTKGSGQQSERGSDRTPERSRKENHSSEGTKESSSN--SLSNSRHGAEERGHH 666
Query: 758 ----DSAAREEKKEANKSERSDRKKSPSPAAREEKKEANK 793
++A K+A SER+ R P EE K K
Sbjct: 667 HHHHEAADSSHGKKARDSERNHRTTEAEPKPLEEPKHETK 706
Score = 60 (26.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 28/95 (29%), Positives = 35/95 (36%)
Query: 708 NEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSER--IQGDSGEDDSAAREEK 765
+ D W S+S D NS G + S R S ER GD G K
Sbjct: 540 DRDRTFLEGDW--TSPSKSSDRRNSL-EGYSRSVRSR-SGERWGADGDRGLPKPWEERRK 595
Query: 766 KEANKSERSDRKKSPSPAAREEKKEANKSER-SDR 799
+ + S+R SP K +SER SDR
Sbjct: 596 RRSLSSDRGRTTHSPYEERSRTKGSGQQSERGSDR 630
Score = 40 (19.1 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 388 LFENQSPAHIYYRWKMYSILQGDQPKEWRTNEFR 421
L +++P H+ Y + + L+GD ++++ R
Sbjct: 527 LVRDRTPPHLLYSDRDRTFLEGDWTSPSKSSDRR 560
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 114 (45.2 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G LN EQ L + F +GP++ + ++ D E R R GF+ F N + A+
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVV---KDRETQRSRGFGFITFTNPEHASNAM 64
Query: 258 KYLNGKDVQSYEMKLGW-GKS 277
+ +NG+ + ++++ GKS
Sbjct: 65 RAMNGESLDGRQIRVDHAGKS 85
>UNIPROTKB|F1LVK5 [details] [associations]
symbol:F1LVK5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 IPI:IPI00569674 PRIDE:F1LVK5
Ensembl:ENSRNOT00000007700 Uniprot:F1LVK5
Length = 249
Score = 131 (51.2 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 29/94 (30%), Positives = 54/94 (57%)
Query: 181 QEETKGSFDSGDPCTTNLYLG--NLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKAR 238
Q G++++ DP N +LG L+ ITE+ L E+F +YGP+A + I++ D++ ++
Sbjct: 73 QRNHGGNWENPDP---NYFLGVFGLSLYITERDLREVFSKYGPVADVSIVY---DQQSSQ 126
Query: 239 GRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272
R FV F N D + A ++ NG ++ + ++
Sbjct: 127 SREFAFVCFENIDDAKEAKEHANGMELDGCQSRV 160
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 138 (53.6 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 23/78 (29%), Positives = 49/78 (62%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ N + +++L ++FG++GP S+K+M +E + + GFV+F +D ++
Sbjct: 146 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 201
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ +NGK++ ++ +G
Sbjct: 202 AVDEMNGKELNGKQIYVG 219
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 122 (48.0 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G L+ EQ L ++F +YG ++ + ++ D E R R GFV F N D + A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVV---KDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 258 KYLNGKDVQSYEMKLGW-GKS 277
+NGK V ++++ GKS
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKS 85
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 138 (53.6 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 23/78 (29%), Positives = 49/78 (62%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ N + +++L ++FG++GP S+K+M +E + + GFV+F +D ++
Sbjct: 159 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 214
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ +NGK++ ++ +G
Sbjct: 215 AVDEMNGKELNGKQIYVG 232
>ZFIN|ZDB-GENE-040426-1764 [details] [associations]
symbol:rbm18 "RNA binding motif protein 18"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1764 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q7YZ92 CTD:92400 eggNOG:NOG75816
GeneTree:ENSGT00390000013765 HOGENOM:HOG000231619
HOVERGEN:HBG057119 OMA:EAKLQMM OrthoDB:EOG4MCX1D EMBL:BC059651
IPI:IPI00481916 RefSeq:NP_957087.1 UniGene:Dr.82770
ProteinModelPortal:Q6PBM8 Ensembl:ENSDART00000064975 GeneID:393766
KEGG:dre:393766 InParanoid:Q6PBM8 NextBio:20814763 Bgee:Q6PBM8
Uniprot:Q6PBM8
Length = 188
Score = 125 (49.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 24/77 (31%), Positives = 47/77 (61%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++GN++PKITE L+++ ++G + ++ +S + + R FV F +++ ERA+
Sbjct: 25 LWIGNIDPKITEYHLVKLLEKFGKVKQFDFLFHKSGPLEGQPRGYCFVNFHTKEEAERAI 84
Query: 258 KYLNGKDVQSYEMKLGW 274
+ LNGK S ++ + W
Sbjct: 85 QCLNGKLALSKKLVVRW 101
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 138 (53.6 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 23/78 (29%), Positives = 49/78 (62%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ N + +++L ++FG++GP S+K+M +E + + GFV+F +D ++
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ +NGK++ ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 138 (53.6 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 23/78 (29%), Positives = 49/78 (62%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ N + +++L ++FG++GP S+K+M +E + + GFV+F +D ++
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ +NGK++ ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 138 (53.6 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 23/78 (29%), Positives = 49/78 (62%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ N + +++L ++FG++GP S+K+M +E + + GFV+F +D ++
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ +NGK++ ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 138 (53.6 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 23/78 (29%), Positives = 49/78 (62%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ N + +++L ++FG++GP S+K+M +E + + GFV+F +D ++
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ +NGK++ ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 138 (53.6 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 23/78 (29%), Positives = 49/78 (62%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ N + +++L ++FG++GP S+K+M +E + + GFV+F +D ++
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ +NGK++ ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 138 (53.6 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 23/78 (29%), Positives = 49/78 (62%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ N + +++L ++FG++GP S+K+M +E + + GFV+F +D ++
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ +NGK++ ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 121 (47.7 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G L+ EQ L ++F +YG ++ + ++ D E R R GFV F N D + A+
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVV---KDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 258 KYLNGKDVQSYEMKLGW-GKS 277
+NGK V ++++ GKS
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKS 85
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 121 (47.7 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G L+ EQ L ++F +YG ++ + ++ D E R R GFV F N D + A+
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVV---KDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 258 KYLNGKDVQSYEMKLGW-GKS 277
+NGK V ++++ GKS
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKS 85
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 121 (47.7 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G L+ EQ L ++F +YG ++ + ++ D E R R GFV F N D + A+
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVV---KDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 258 KYLNGKDVQSYEMKLGW-GKS 277
+NGK V ++++ GKS
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKS 85
>UNIPROTKB|E1BFX6 [details] [associations]
symbol:RBM15 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060674 "placenta blood vessel development"
evidence=IEA] [GO:0060412 "ventricular septum morphogenesis"
evidence=IEA] [GO:0048536 "spleen development" evidence=IEA]
[GO:0045638 "negative regulation of myeloid cell differentiation"
evidence=IEA] [GO:0007221 "positive regulation of transcription of
Notch receptor target" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001569 "patterning of blood vessels"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000122 GO:GO:0001569
GO:GO:0048536 InterPro:IPR012921 Pfam:PF07744 GO:GO:0045638
GO:GO:0060412 GO:GO:0060674 PROSITE:PS50917 Gene3D:2.40.290.10
InterPro:IPR016194 SUPFAM:SSF100939 InterPro:IPR010912
GO:GO:0007221 GeneTree:ENSGT00530000063730 OMA:DYLVMIV
EMBL:DAAA02007553 IPI:IPI00700723 Ensembl:ENSBTAT00000052066
Uniprot:E1BFX6
Length = 914
Score = 116 (45.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 34/128 (26%), Positives = 59/128 (46%)
Query: 152 EREERHKYKGVLKGVYSEEAE--PPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITE 209
ERE + + ++ YS E + A ++E + S + L+LGNL+ +TE
Sbjct: 285 ERERDYSFYERVRPAYSLEPRVGTGAGAAPFREVDEISPEDDQRANRTLFLGNLDITVTE 344
Query: 210 QQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYE 269
L F R+G + + I P + + GF+ F N RA ++GK +
Sbjct: 345 SDLRRAFDRFGVITEVDIKRP----SRGQTSTYGFLKFENLDMSHRAKLAMSGKIIIRNP 400
Query: 270 MKLGWGKS 277
+K+G+GK+
Sbjct: 401 IKIGYGKA 408
Score = 74 (31.1 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 741 RRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKKSP-SPAAREEKKEANKSERSDR 799
RRG L E+ QGD + ++A E+ + +++ S KSP R + ++ S S +
Sbjct: 662 RRGSL--EKSQGDKRDRKNSASAERDKKHRTTASTEGKSPLKKEDRPDGSASSTSTASSK 719
Query: 800 KKSPS 804
KSPS
Sbjct: 720 LKSPS 724
Score = 61 (26.5 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 33/128 (25%), Positives = 51/128 (39%)
Query: 677 DGEDLDGVPMDKVKPARAATFIPSKWETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTG 736
DG LD D+ P+ P K EE+ + S D + S +
Sbjct: 576 DGWSLDRDRGDRDLPSSRDQ--PRKRRLPEESGGRHLDRSPESDRPRKRHCAPSPDRSPE 633
Query: 737 LTSSR-RGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKKSPSPAAREEKKEANKSE 795
L SSR R + ++R E S R+ + KS+ R + S +A +KK +++
Sbjct: 634 LGSSRDRYNSDNDRSSRLLLERPSPIRDRRGSLEKSQGDKRDRKNSASAERDKK--HRTT 691
Query: 796 RSDRKKSP 803
S KSP
Sbjct: 692 ASTEGKSP 699
>UNIPROTKB|E7EPF2 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC092153 EMBL:AC104598
EMBL:AC131754 HGNC:HGNC:9907 ChiTaRS:RBMS1 EMBL:AC133105
IPI:IPI01011353 ProteinModelPortal:E7EPF2 SMR:E7EPF2
Ensembl:ENST00000428519 ArrayExpress:E7EPF2 Bgee:E7EPF2
Uniprot:E7EPF2
Length = 128
Score = 95 (38.5 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 31/102 (30%), Positives = 50/102 (49%)
Query: 173 PPS-AIAIYQEETKGSFDSG-DPCT-TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMW 229
PPS + + S +SG D + TNLY+ L P T+Q L+++ YG + S K +
Sbjct: 3 PPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAIL 62
Query: 230 PRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMK 271
++ K +G GFV F + ++A+ L VQ+ K
Sbjct: 63 DKTTN-KCKGY--GFVDFDSPAAAQKAVSALKASGVQAQMAK 101
Score = 41 (19.5 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 433 PMNLFTQGMPDELVEEEVES 452
P NL+ +P + E+E+E+
Sbjct: 107 PTNLYISNLPLSMDEQELEN 126
>UNIPROTKB|F1NDX1 [details] [associations]
symbol:CHERP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0044325 "ion channel binding"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0051209 "release of sequestered calcium ion into
cytosol" evidence=IEA] [GO:0051533 "positive regulation of NFAT
protein import into nucleus" evidence=IEA] InterPro:IPR000061
Pfam:PF01805 PROSITE:PS50128 SMART:SM00648 GO:GO:0048471
GO:GO:0008285 GO:GO:0051209 GO:GO:0003723 GO:GO:0006396
GO:GO:0051533 Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
SUPFAM:SSF109905 PROSITE:PS51391 GeneTree:ENSGT00600000084415
EMBL:AADN02061998 IPI:IPI00821225 Ensembl:ENSGALT00000006062
ArrayExpress:F1NDX1 Uniprot:F1NDX1
Length = 398
Score = 108 (43.1 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 348 PTDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKM 403
P D+ L +I ++ +FV R GP FE M M K+ NP + FLF + YY++K+
Sbjct: 7 PDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKENPKFSFLFGGDF--YGYYKYKL 60
Score = 73 (30.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 31/142 (21%), Positives = 65/142 (45%)
Query: 466 LEDFLRNLTPERVKVAEAMVFCMEHSDAAEEICECIMESLSNESTA--LH--KKIGRLYL 521
L+ + T + + + +F S A CE + L N TA H ++ +YL
Sbjct: 160 LQPIIDTCTKDAISAGKNWMFSNAKSPAH---CELMAGHLRNRITAEGAHFELRLHLIYL 216
Query: 522 VSDILHNCGIKISNASFYRRGFESRLFQIFTEMHIT-YVNLESRLKAEGLRTRVMQVFRA 580
++D+LH+C K + R + L ++ ++ T ++ +E E + ++ ++ +
Sbjct: 217 INDVLHHCQRKQA------RDLLAALQKVVVPIYCTSFLAVE-----EDKQQKIARLLQL 265
Query: 581 WEDWAVYPKDYLIKLQNVFLGL 602
WE + + + +LQ+ LGL
Sbjct: 266 WEKNGYFDESIIQQLQSPALGL 287
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 134 (52.2 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 38/108 (35%), Positives = 59/108 (54%)
Query: 166 VYSEEAEPPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASI 225
V + +AE A A+ KGS +G P LY+G+L+ ITE L IF +G + SI
Sbjct: 68 VQASQAEKNRAAAMANNLQKGS--AG-PM--RLYVGSLHFNITEDMLRGIFEPFGRIESI 122
Query: 226 KIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273
++M D E R + GF+ F + + ++AL+ LNG ++ MK+G
Sbjct: 123 QLMM---DSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 167
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 133 (51.9 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 22/77 (28%), Positives = 48/77 (62%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
N+Y+ N + +++L ++FG++GP S+K+M +E + + GFV+F +D ++A
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQKA 247
Query: 257 LKYLNGKDVQSYEMKLG 273
+ +NGK++ ++ +G
Sbjct: 248 VDEMNGKELNGKQIYVG 264
Score = 117 (46.2 bits), Expect = 0.00099, P = 0.00099
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGE 254
T +LY+G+L+P +TE L E F GP+ SI+I D + N +V F + KD E
Sbjct: 10 TASLYVGDLHPDVTEAMLYEKFSPAGPILSIRIC---RDLITSGSSNYAYVNFQHTKDAE 66
Query: 255 RALKYLNGKDVQSYEMKLGWGK 276
AL +N ++ +++ W +
Sbjct: 67 HALDTMNFDVIKGKPVRIMWSQ 88
>UNIPROTKB|F1Q262 [details] [associations]
symbol:SPEN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063730 EMBL:AAEX03001862 EMBL:AAEX03001863
Ensembl:ENSCAFT00000025602 Uniprot:F1Q262
Length = 3297
Score = 104 (41.7 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 45/186 (24%), Positives = 81/186 (43%)
Query: 631 EDLDGVPLDGAALMKSLQRLPHSSSAPDEDDIDGVPCTYNITSATMDGEDLDGVP-MDKV 689
E+ V A ++ +++ S D G P S+ D +P MD
Sbjct: 1739 EEAKPVSEQAATAVQQTEQVDLPSGVDTSKDAAGAPLVVEENSSA------DQLPYMDTK 1792
Query: 690 KPARAATFIPSKWETVEENEDSAVT----SSKWDDVEQSESKDDSNSKGTGLTSSRRGDL 745
P A+F ++ TV+ DS + K ++ ++ + + +++ T++++ ++
Sbjct: 1793 PPTPGASFSQAE-ATVDPEPDSTPALPKPTPKPEEADEPKVEKPNSAAHVEPTANQKAEV 1851
Query: 746 SSERIQGDSGED---DSAAREEKKEANKSERSDRKKSPSPAAREEKKEANKSERSDR--- 799
E +Q + ED D + K+ NKS+RS + A+ EK KSER DR
Sbjct: 1852 VPE-VQPQASEDTEVDPPIATKDKKTNKSKRSKTPVQAATASTVEKPVTRKSERIDREKL 1910
Query: 800 KKSPSP 805
K+S SP
Sbjct: 1911 KRSTSP 1916
Score = 97 (39.2 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGE 254
T +L++GNL + E++++E F RYG + S+KI+ R E G FV F++ K +
Sbjct: 62 TRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSE----GGVAAFVDFVDIKSAQ 117
Query: 255 RALKYLN 261
+A +N
Sbjct: 118 KAHNSVN 124
Score = 88 (36.0 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARG-RNCGFVAFMNRKDG 253
T L++GNL T L IF R+G + I I +K G F+ + +
Sbjct: 494 TRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDI-------KKVNGVPQYAFLQYCDIASV 546
Query: 254 ERALKYLNGKDVQSYEMKLGWGKSV 278
+A+K ++G+ + + +KLG+GKS+
Sbjct: 547 CKAIKKMDGEYLGNNRLKLGFGKSM 571
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 128 (50.1 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 30/81 (37%), Positives = 45/81 (55%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G L+ TEQ L E F +YG +A + ++ D E R R GFV F N +D + A+
Sbjct: 25 LFIGGLSYDTTEQSLEEAFSKYGTIAKVDVI---RDRETDRSRGFGFVTFENPEDAKDAM 81
Query: 258 KYLNGKDVQSYEMKLGW-GKS 277
+NGK V +++ GKS
Sbjct: 82 AAMNGKQVDGRMIRVDEAGKS 102
>UNIPROTKB|F2Z2U1 [details] [associations]
symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010141 HGNC:HGNC:9912
HGNC:HGNC:23914 EMBL:AC007322 HGNC:HGNC:23915 HGNC:HGNC:23916
IPI:IPI00916472 SMR:F2Z2U1 Ensembl:ENST00000358944
Ensembl:ENST00000361046 Ensembl:ENST00000382639
Ensembl:ENST00000382653 Uniprot:F2Z2U1
Length = 81
Score = 112 (44.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 23/66 (34%), Positives = 40/66 (60%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G LN + E+ L +FG++GP++ + ++ R+ K+RG F+ F N D + A
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS--KSRG--FAFITFENPADAKNAA 65
Query: 258 KYLNGK 263
K +NGK
Sbjct: 66 KDMNGK 71
>UNIPROTKB|K7GQ39 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
Length = 101
Score = 112 (44.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G LN + E+ L +FG+YG + + +M D E + R FV F + D + A
Sbjct: 12 LFIGGLNTETNEKALEAVFGKYGRIVEVLLM---KDRETNKSRGFAFVTFESPADAKDAA 68
Query: 258 KYLNGKDVQS 267
+ +NGK V S
Sbjct: 69 RDMNGKGVPS 78
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 112 (44.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G LN EQ L + F +GP++ + ++ D E R R GF+ F N + A+
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVV---KDRETQRSRGFGFITFTNPEHASDAM 64
Query: 258 KYLNGKDVQSYEMKLGW-GKS 277
+ +NG+ + ++++ GKS
Sbjct: 65 RAMNGESLDGRQIRVDHAGKS 85
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 134 (52.2 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 38/108 (35%), Positives = 59/108 (54%)
Query: 166 VYSEEAEPPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASI 225
V + +AE A A+ KGS +G P LY+G+L+ ITE L IF +G + SI
Sbjct: 225 VQASQAEKNRAAAMANNLQKGS--AG-PM--RLYVGSLHFNITEDMLRGIFEPFGRIESI 279
Query: 226 KIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273
++M D E R + GF+ F + + ++AL+ LNG ++ MK+G
Sbjct: 280 QLMM---DSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 324
>ASPGD|ASPL0000035772 [details] [associations]
symbol:rrmA species:162425 "Emericella nidulans"
[GO:0006527 "arginine catabolic process" evidence=IMP] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 eggNOG:COG0724 OrthoDB:EOG44BFB8 EMBL:AACD01000169
HOGENOM:HOG000186228 OMA:PQAHYGQ RefSeq:XP_682359.1
ProteinModelPortal:Q5ARJ0 STRING:Q5ARJ0
EnsemblFungi:CADANIAT00009524 GeneID:2868083 KEGG:ani:AN9090.2
Uniprot:Q5ARJ0
Length = 393
Score = 133 (51.9 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 39/141 (27%), Positives = 60/141 (42%)
Query: 165 GVYSEEAEPPSAIAIY-QEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLA 223
G+Y PP + Y + F DP T +++G L+ +TE +L F +G +
Sbjct: 258 GMYPPMGAPP--MGFYGAPQPMNQFT--DPNNTTVFVGGLSGYVTEDELRSFFQGFGEIT 313
Query: 224 SIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVXXXXX 283
+KI P G+ CGFV F+ R E A+ + G + + ++L WG+S
Sbjct: 314 YVKIP-P--------GKGCGFVQFVQRHAAEMAINQMQGYPIGNSRVRLSWGRSQNNSGP 364
Query: 284 XXXXXXKMLELTVPPPPSGLP 304
PPPP LP
Sbjct: 365 AGSPYRP----APPPPPMYLP 381
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 136 (52.9 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ NL+ + EQ L ++F R+G + S+K+M R D +RG GFV F ++ ++
Sbjct: 191 TNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVM--RDDSGHSRG--FGFVNFQKHEEAQK 246
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ +NGK+V + +G
Sbjct: 247 AVMDMNGKEVSGRLLYVG 264
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 111 (44.1 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G L+ EQ L ++F +YG ++ + ++ D E R R GFV F N D + A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVV---KDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 258 KYLNGK 263
+NGK
Sbjct: 65 MAMNGK 70
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 111 (44.1 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G L+ EQ L ++F +YG ++ + ++ D E R R GFV F N D + A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVV---KDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 258 KYLNGK 263
+NGK
Sbjct: 65 MAMNGK 70
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 111 (44.1 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G LN + E+ L +FG+YG + + +M D E + R FV F + D + A
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLM---KDRETNKSRGFAFVTFESPADAKDAA 66
Query: 258 KYLNGKDVQSYEMKL 272
+ +NGK + +K+
Sbjct: 67 RDMNGKSLDGKAIKV 81
>MGI|MGI:1923598 [details] [associations]
symbol:Rbm15b "RNA binding motif protein 15B" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1923598 GO:GO:0005654 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 InterPro:IPR012921 Pfam:PF07744 GO:GO:0000381
eggNOG:NOG250829 PROSITE:PS50917 Gene3D:2.40.290.10
InterPro:IPR016194 SUPFAM:SSF100939 InterPro:IPR010912 CTD:29890
HOGENOM:HOG000006547 HOVERGEN:HBG058366 KO:K13190 OMA:KRDSERN
OrthoDB:EOG42RD6Z EMBL:AC147636 EMBL:BC052180 EMBL:AK075777
IPI:IPI00278942 RefSeq:NP_780611.3 UniGene:Mm.431589
UniGene:Mm.440089 PDB:1WHY PDBsum:1WHY ProteinModelPortal:Q6PHZ5
SMR:Q6PHZ5 PhosphoSite:Q6PHZ5 PaxDb:Q6PHZ5 PRIDE:Q6PHZ5
Ensembl:ENSMUST00000055843 GeneID:109095 KEGG:mmu:109095
UCSC:uc012gzz.1 GeneTree:ENSGT00530000063730 InParanoid:Q6PHZ5
EvolutionaryTrace:Q6PHZ5 NextBio:361644 Bgee:Q6PHZ5
CleanEx:MM_RBM15B Genevestigator:Q6PHZ5
GermOnline:ENSMUSG00000045365 Uniprot:Q6PHZ5
Length = 887
Score = 120 (47.3 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 30/113 (26%), Positives = 55/113 (48%)
Query: 165 GVYSEEAEPPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLAS 224
G+Y + P A+ +E+ D T NL++GNL+ ++E +L F +YG +
Sbjct: 304 GLYDDRGRPYGYQAVCEEDLMPEDDQR--ATRNLFIGNLDHSVSEVELRRAFEKYGIIEE 361
Query: 225 IKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKS 277
+ I P + +G F+ F N RA ++G+ + +K+G+GK+
Sbjct: 362 VVIKRPA----RGQGGAYAFLKFQNLDMAHRAKVAMSGRVIGRNPIKIGYGKA 410
Score = 67 (28.6 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 26/98 (26%), Positives = 41/98 (41%)
Query: 708 NEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKE 767
+ D W + S+S D NS G + S R S ER GD G+ A E++
Sbjct: 537 DRDRTFLEGDWTSL--SKSSDRRNSL-EGYSRSVRSR-SGERWGGD-GDRSIAKPWEERR 591
Query: 768 ANKSERSDRKKSPSPAAREEKKEANKSERSDRKKSPSP 805
+S SDR ++ E + ++S+R +P
Sbjct: 592 KRRSLSSDRGRTTHSPYEERSRTKGGGQQSERGSDRTP 629
Score = 61 (26.5 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 25/114 (21%), Positives = 45/114 (39%)
Query: 698 IPSKWETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGED 757
I WE E + +++S + S ++ S +KG G S R D + ER + ++
Sbjct: 583 IAKPWE--ERRKRRSLSSDR-GRTTHSPYEERSRTKGGGQQSERGSDRTPERSRKENHSS 639
Query: 758 DSAAREEKKEANKSERSDRKKS------PSPAAREEKKEANKSERSDRKKSPSP 805
+ + S ++S +P + KK +SER+ R P
Sbjct: 640 EGTKESGSNSLSNSRHGAEERSHHHHHHEAPDSSHGKK-TRESERNHRTTEAEP 692
Score = 57 (25.1 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 20/72 (27%), Positives = 28/72 (38%)
Query: 722 EQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKKSPS 781
E S+ S L++SR G + ER + + KK +SER+ R
Sbjct: 635 ENHSSEGTKESGSNSLSNSRHG--AEERSHHHHHHEAPDSSHGKK-TRESERNHRTTEAE 691
Query: 782 PAAREEKKEANK 793
P EE K K
Sbjct: 692 PKTLEEPKHETK 703
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 134 (52.2 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 38/108 (35%), Positives = 59/108 (54%)
Query: 166 VYSEEAEPPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASI 225
V + +AE A A+ KGS +G P LY+G+L+ ITE L IF +G + SI
Sbjct: 225 VQASQAEKNRAAAMANNLQKGS--AG-PM--RLYVGSLHFNITEDMLRGIFEPFGRIESI 279
Query: 226 KIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273
++M D E R + GF+ F + + ++AL+ LNG ++ MK+G
Sbjct: 280 QLMM---DSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 324
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 134 (52.2 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 38/108 (35%), Positives = 59/108 (54%)
Query: 166 VYSEEAEPPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASI 225
V + +AE A A+ KGS +G P LY+G+L+ ITE L IF +G + SI
Sbjct: 225 VQASQAEKNRAAAMANNLQKGS--AG-PM--RLYVGSLHFNITEDMLRGIFEPFGRIESI 279
Query: 226 KIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273
++M D E R + GF+ F + + ++AL+ LNG ++ MK+G
Sbjct: 280 QLMM---DSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 324
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 134 (52.2 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 38/108 (35%), Positives = 59/108 (54%)
Query: 166 VYSEEAEPPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASI 225
V + +AE A A+ KGS +G P LY+G+L+ ITE L IF +G + SI
Sbjct: 225 VQASQAEKNRAAAMANNLQKGS--AG-PM--RLYVGSLHFNITEDMLRGIFEPFGRIESI 279
Query: 226 KIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273
++M D E R + GF+ F + + ++AL+ LNG ++ MK+G
Sbjct: 280 QLMM---DSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 324
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 134 (52.2 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 38/108 (35%), Positives = 59/108 (54%)
Query: 166 VYSEEAEPPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASI 225
V + +AE A A+ KGS +G P LY+G+L+ ITE L IF +G + SI
Sbjct: 225 VQASQAEKNRAAAMANNLQKGS--AG-PM--RLYVGSLHFNITEDMLRGIFEPFGRIESI 279
Query: 226 KIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273
++M D E R + GF+ F + + ++AL+ LNG ++ MK+G
Sbjct: 280 QLMM---DSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 324
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 134 (52.2 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 38/108 (35%), Positives = 59/108 (54%)
Query: 166 VYSEEAEPPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASI 225
V + +AE A A+ KGS +G P LY+G+L+ ITE L IF +G + SI
Sbjct: 225 VQASQAEKNRAAAMANNLQKGS--AG-PM--RLYVGSLHFNITEDMLRGIFEPFGRIESI 279
Query: 226 KIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273
++M D E R + GF+ F + + ++AL+ LNG ++ MK+G
Sbjct: 280 QLMM---DSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 324
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 134 (52.2 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 38/108 (35%), Positives = 59/108 (54%)
Query: 166 VYSEEAEPPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASI 225
V + +AE A A+ KGS +G P LY+G+L+ ITE L IF +G + SI
Sbjct: 225 VQASQAEKNRAAAMANNLQKGS--AG-PM--RLYVGSLHFNITEDMLRGIFEPFGRIESI 279
Query: 226 KIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273
++M D E R + GF+ F + + ++AL+ LNG ++ MK+G
Sbjct: 280 QLMM---DSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 324
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 134 (52.2 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 38/108 (35%), Positives = 59/108 (54%)
Query: 166 VYSEEAEPPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASI 225
V + +AE A A+ KGS +G P LY+G+L+ ITE L IF +G + SI
Sbjct: 225 VQASQAEKNRAAAMANNLQKGS--AG-PM--RLYVGSLHFNITEDMLRGIFEPFGRIESI 279
Query: 226 KIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273
++M D E R + GF+ F + + ++AL+ LNG ++ MK+G
Sbjct: 280 QLMM---DSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 324
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 134 (52.2 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 38/108 (35%), Positives = 59/108 (54%)
Query: 166 VYSEEAEPPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASI 225
V + +AE A A+ KGS +G P LY+G+L+ ITE L IF +G + SI
Sbjct: 225 VQASQAEKNRAAAMANNLQKGS--AG-PM--RLYVGSLHFNITEDMLRGIFEPFGRIESI 279
Query: 226 KIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273
++M D E R + GF+ F + + ++AL+ LNG ++ MK+G
Sbjct: 280 QLMM---DSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 324
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 118 (46.6 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L +G L+ EQ L ++F +YG ++ + ++ D E R R GFV F N D + A+
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVV---KDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 258 KYLNGKDVQSYEMKLGW-GKS 277
+NGK V ++++ GKS
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKS 85
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 122 (48.0 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G L+ EQ L ++F +YG ++ + ++ D E R R GFV F N D + A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVV---KDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 258 KYLNGKDVQSYEMKLGW-GKS 277
+NGK V ++++ GKS
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKS 85
>UNIPROTKB|E2RPV8 [details] [associations]
symbol:RBM15B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 InterPro:IPR012921 Pfam:PF07744 GO:GO:0000381
PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 InterPro:IPR010912 KO:K13190 OMA:KRDSERN
GeneTree:ENSGT00530000063730 EMBL:AAEX03012206
RefSeq:XP_003639807.1 Ensembl:ENSCAFT00000016286 GeneID:100855610
KEGG:cfa:100855610 Uniprot:E2RPV8
Length = 898
Score = 120 (47.3 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 30/113 (26%), Positives = 55/113 (48%)
Query: 165 GVYSEEAEPPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLAS 224
G+Y + P A+ +E+ D T NL++GNL+ ++E +L F +YG +
Sbjct: 317 GLYDDRGRPYGYPAVCEEDLMPEDDQR--ATRNLFIGNLDHSVSEVELRRAFEKYGIIEE 374
Query: 225 IKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKS 277
+ I P + +G F+ F N RA ++G+ + +K+G+GK+
Sbjct: 375 VVIKRPA----RGQGGAYAFLKFQNLDMAHRAKVAMSGRVIGRNPIKIGYGKA 423
Score = 73 (30.8 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 27/113 (23%), Positives = 45/113 (39%)
Query: 698 IPSKWETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGED 757
+P WE E + +++S + S ++ S +KG G R D + ER + ++
Sbjct: 595 LPKPWE--ERRKRRSLSSDR-GRTTHSPYEERSRTKGGGPQVDRGSDRTPERSRKENHSS 651
Query: 758 DSAAREEKKEANKS-----ERSDRKKSPSPAAREEKKEANKSERSDRKKSPSP 805
D + S ERS +P + KK +SER+ R P
Sbjct: 652 DGTKESSSNSLSNSRHGAEERSHHHHHEAPDSSHGKK-TRESERNHRTAEAEP 703
Score = 37 (18.1 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 391 NQSPAHIYYRWKMYSILQGDQPKEWRTNEFR 421
+++P H+ Y + + L+GD ++++ R
Sbjct: 540 DRTPPHLLYSDRDRTFLEGDWTSPSKSSDRR 570
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 133 (51.9 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 28/67 (41%), Positives = 41/67 (61%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
+NLY+ NL+ + E +L EIFG YG + S K+M E R + GFV F N ++ ++
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMC----HENGRSKGFGFVCFSNCEESKQ 359
Query: 256 ALKYLNG 262
A +YLNG
Sbjct: 360 AKRYLNG 366
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 109 (43.4 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
T +Y+GNL+P T+ L E F YG + +M R + R R GFV + + + E
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTD---RSRGFGFVTYSSHSEAEA 59
Query: 256 ALKYLNGKDV 265
A+ ++GK++
Sbjct: 60 AVSGMDGKEL 69
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 143 (55.4 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 171 AEPPSAIAIYQEETKGSFDSGD-PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMW 229
AEP + + + + SG P + +LY+G L+P +TE L E+F GP+ASI++
Sbjct: 54 AEPSESTSTPTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVC- 112
Query: 230 PRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGK 276
D R +V F N +DGE+AL LN ++ ++ W +
Sbjct: 113 --RDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQ 157
Score = 38 (18.4 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 6/20 (30%), Positives = 15/20 (75%)
Query: 434 MNLFTQGMPDELVEEEVESK 453
+NLF + + DE+ +E ++++
Sbjct: 364 VNLFIKNLQDEVDDERLKAE 383
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 133 (51.9 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 22/77 (28%), Positives = 48/77 (62%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
N+Y+ N + +++L ++FG++GP S+K+M +E + + GFV+F +D ++A
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQKA 247
Query: 257 LKYLNGKDVQSYEMKLG 273
+ +NGK++ ++ +G
Sbjct: 248 VDEMNGKELNGKQIYVG 264
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 133 (51.9 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 28/78 (35%), Positives = 47/78 (60%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ N + +++L E FG+YG S+K+M D K+RG GFV+F +D ++
Sbjct: 191 TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVM--TDDHGKSRG--FGFVSFERHEDAQK 246
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ +NGKD+ + +G
Sbjct: 247 AVDDMNGKDLNGKAIFVG 264
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 126 (49.4 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 21/68 (30%), Positives = 43/68 (63%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
N+Y+ N + +++L ++FG++GP S+K+M +E + + GFV+F +D ++A
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQKA 247
Query: 257 LKYLNGKD 264
+ +NGK+
Sbjct: 248 VDEMNGKE 255
Score = 117 (46.2 bits), Expect = 0.00051, P = 0.00051
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGE 254
T +LY+G+L+P +TE L E F GP+ SI+I D + N +V F + KD E
Sbjct: 10 TASLYVGDLHPDVTEAMLYEKFSPAGPILSIRIC---RDLITSGSSNYAYVNFQHTKDAE 66
Query: 255 RALKYLNGKDVQSYEMKLGWGK 276
AL +N ++ +++ W +
Sbjct: 67 HALDTMNFDVIKGKPVRIMWSQ 88
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 118 (46.6 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L +G L+ EQ L ++F +YG ++ + ++ D E R R GFV F N D + A+
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVV---KDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 258 KYLNGKDVQSYEMKLGW-GKS 277
+NGK V ++++ GKS
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKS 85
>CGD|CAL0004999 [details] [associations]
symbol:orf19.6790 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0061158 "3'-UTR-mediated mRNA destabilization"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0004999 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719769.1 RefSeq:XP_719886.1 ProteinModelPortal:Q5ADQ1
GeneID:3638443 GeneID:3638606 KEGG:cal:CaO19.14082
KEGG:cal:CaO19.6790 Uniprot:Q5ADQ1
Length = 887
Score = 124 (48.7 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 32/121 (26%), Positives = 57/121 (47%)
Query: 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRK 251
DP T +++G L+ ++E L +F +G + +KI P G+NCGFV + NR+
Sbjct: 517 DPNNTTVFVGGLSSDVSEPTLHTLFKPFGLIQQVKIP-P--------GKNCGFVKYSNRE 567
Query: 252 DGERALKYLNGKDVQSYEMKLGWGK-SVXXXXXXXXXXXKMLELTVPPPPSGLPFNAQPA 310
+ E A+ + G + ++L WG+ SV ++ ++ + L PA
Sbjct: 568 EAEEAIAAMQGFVIGGNRVRLSWGRVSVSNKKYQQQQQQQVAQVAQLQVQAALSMGMDPA 627
Query: 311 S 311
S
Sbjct: 628 S 628
Score = 60 (26.2 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 31/168 (18%), Positives = 65/168 (38%)
Query: 606 VPLDANNGNEEDEDLDGAPLSDVDGEDLDGVPLDGAALMKSLQRLPHSSSAPDEDDIDGV 665
+P ++ +++ + G S +G+ G+ + L + R + ++DD+
Sbjct: 720 IPYQSHFVSDDGRESSGGGGSGHNGDSNQGIT-SSSFLSNNGGRNNGDNDQVEQDDLTQA 778
Query: 666 PCTYNITSATMDGEDLDGVPMD-KVKPARAATFIPSKWETVEENEDSAVTSSKWDDVEQS 724
N+ S DG D DG + P + + S T ++ + + Q
Sbjct: 779 MDKMNLNSEQDDGND-DGAEYGYMMNPGFGSYGVSS---TQQQQQQQQRQQQQRQQSYQQ 834
Query: 725 ESKDDSNSKGTGLTSS-RRGDLSSERIQGDSGEDDSAAREEKKEANKS 771
DD + +G T+ +G S + + +DD ++ + E KS
Sbjct: 835 LIHDDYDQEGDKTTTKDEQGSGSDDSTGKKTKDDDDEVKDNENENVKS 882
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 122 (48.0 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G L+ EQ L ++F +YG ++ + ++ D E R R GFV F N D + A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVV---KDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 258 KYLNGKDVQSYEMKLGW-GKS 277
+NGK V ++++ GKS
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKS 85
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 131 (51.2 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 50/197 (25%), Positives = 89/197 (45%)
Query: 82 EDTSEKGKLYKPQSRLQEDKDS--SASKAEEYA--RLLGDKKTESQRLXXXXXXXXXXXS 137
+++SE+ ++ K +++ E DS S S++EE A + GD KT +
Sbjct: 173 DESSEEEEVPKAKAKAAESSDSEDSDSESEEEAPAKAKGDAKTSKEESDSDSDSSESSSD 232
Query: 138 NLEMFKEELKMIQEEREERHKYKGVLKGVYSEEAEPPSAIAIYQEETKGSFDSGDPCTTN 197
+ EE E E+ K K E EP +A K + G + N
Sbjct: 233 S----DEESGSSGSESEDSDKPADSKKR--KAEEEPAAA------SKKSKTEEG--ASAN 278
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++GNL+ +TE+ L + F ++G L S +IM ++ + R R G+V F N D +A
Sbjct: 279 LFVGNLSWNVTEEWLHQEFEQFGEL-SARIM---TERDTGRSRGFGYVEFTNAADAAKAY 334
Query: 258 KYLNGKDVQSYEMKLGW 274
+ + ++ ++ L +
Sbjct: 335 EAMKEHEIDGRKINLDY 351
>UNIPROTKB|E5RGV5 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00974016
ProteinModelPortal:E5RGV5 SMR:E5RGV5 Ensembl:ENST00000474809
ArrayExpress:E5RGV5 Bgee:E5RGV5 Uniprot:E5RGV5
Length = 144
Score = 107 (42.7 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRK 251
D LY+GNL+ +TE ++++F + GP + K++ + + C FV F +
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPY----C-FVEFHEHR 57
Query: 252 DGERALKYLNGKDVQSYEMKLGW 274
AL +NG+ + E+K+ W
Sbjct: 58 HAAAALAAMNGRKIMGKEVKVNW 80
>UNIPROTKB|E5RH24 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00979703
ProteinModelPortal:E5RH24 SMR:E5RH24 Ensembl:ENST00000520142
ArrayExpress:E5RH24 Bgee:E5RH24 Uniprot:E5RH24
Length = 118
Score = 107 (42.7 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
+LY+G+L+P +TE L E F GP+ SI++ D R +V F D ERA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAERA 68
Query: 257 LKYLNGKDVQSYEMKLGWGK 276
L +N ++ +++ W +
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQ 88
>UNIPROTKB|E5RJB9 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI01013146
ProteinModelPortal:E5RJB9 SMR:E5RJB9 Ensembl:ENST00000521865
ArrayExpress:E5RJB9 Bgee:E5RJB9 Uniprot:E5RJB9
Length = 129
Score = 107 (42.7 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
+LY+G+L+P +TE L E F GP+ SI++ D R +V F D ERA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAERA 68
Query: 257 LKYLNGKDVQSYEMKLGWGK 276
L +N ++ +++ W +
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQ 88
>UNIPROTKB|Q3AF33 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 107 (42.7 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGE 254
T LY+GNL KI +QL EI +G + +++ +S R R GF+ + +D E
Sbjct: 2 TKTLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKST---GRSRGYGFIEVRD-EDAE 57
Query: 255 RALKYLNGKDVQSYEM 270
+ + LNGK+V+ ++
Sbjct: 58 KFMTGLNGKEVEGRQL 73
>TIGR_CMR|CHY_0389 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 107 (42.7 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGE 254
T LY+GNL KI +QL EI +G + +++ +S R R GF+ + +D E
Sbjct: 2 TKTLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKST---GRSRGYGFIEVRD-EDAE 57
Query: 255 RALKYLNGKDVQSYEM 270
+ + LNGK+V+ ++
Sbjct: 58 KFMTGLNGKEVEGRQL 73
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 121 (47.7 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 22/70 (31%), Positives = 44/70 (62%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ N ++ ++ L E+F ++G S+K+M R K++G GFV++ +D +
Sbjct: 104 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVM--RDPNGKSKG--FGFVSYEKHEDANK 159
Query: 256 ALKYLNGKDV 265
A++ +NGK++
Sbjct: 160 AVEEMNGKEI 169
>UNIPROTKB|F1S620 [details] [associations]
symbol:RBM15 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012921
Pfam:PF07744 PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 InterPro:IPR010912 GeneTree:ENSGT00530000063730
EMBL:CU915404 Ensembl:ENSSSCT00000007457 Uniprot:F1S620
Length = 971
Score = 112 (44.5 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 33/128 (25%), Positives = 59/128 (46%)
Query: 152 EREERHKYKGVLKGVYSEEAE--PPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITE 209
ERE + + ++ YS E + A +++ + S + L+LGNL+ +TE
Sbjct: 329 ERERDYPFYERVRPAYSLEPRVGAGAGAAPFRDVDEISPEDDQRANRTLFLGNLDITVTE 388
Query: 210 QQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYE 269
L F R+G + + I P + + GF+ F N RA ++GK +
Sbjct: 389 SDLRRAFDRFGVITEVDIKRP----SRGQTSTYGFLKFENLDMSHRAKLAMSGKIIIRNP 444
Query: 270 MKLGWGKS 277
+K+G+GK+
Sbjct: 445 IKIGYGKA 452
Score = 72 (30.4 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 741 RRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKKSP-SPAAREEKKEANKSERSDR 799
RRG L E+ QGD + ++A E+ +++ S KSP R + + S S +
Sbjct: 707 RRGSL--EKSQGDKRDRKNSASAERDRKHRTTASTEGKSPLKKEDRSDGSAPSTSTASSK 764
Query: 800 KKSPS 804
KSPS
Sbjct: 765 LKSPS 769
>UNIPROTKB|F1S619 [details] [associations]
symbol:RBM15 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060674 "placenta blood vessel development"
evidence=IEA] [GO:0060412 "ventricular septum morphogenesis"
evidence=IEA] [GO:0048536 "spleen development" evidence=IEA]
[GO:0045638 "negative regulation of myeloid cell differentiation"
evidence=IEA] [GO:0007221 "positive regulation of transcription of
Notch receptor target" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001569 "patterning of blood vessels"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000122 GO:GO:0001569
GO:GO:0048536 InterPro:IPR012921 Pfam:PF07744 GO:GO:0045638
GO:GO:0060412 GO:GO:0060674 PROSITE:PS50917 Gene3D:2.40.290.10
InterPro:IPR016194 SUPFAM:SSF100939 InterPro:IPR010912
GO:GO:0007221 GeneTree:ENSGT00530000063730 OMA:DYLVMIV
EMBL:CU915404 Ensembl:ENSSSCT00000007458 Uniprot:F1S619
Length = 979
Score = 112 (44.5 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 33/128 (25%), Positives = 59/128 (46%)
Query: 152 EREERHKYKGVLKGVYSEEAE--PPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITE 209
ERE + + ++ YS E + A +++ + S + L+LGNL+ +TE
Sbjct: 329 ERERDYPFYERVRPAYSLEPRVGAGAGAAPFRDVDEISPEDDQRANRTLFLGNLDITVTE 388
Query: 210 QQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYE 269
L F R+G + + I P + + GF+ F N RA ++GK +
Sbjct: 389 SDLRRAFDRFGVITEVDIKRP----SRGQTSTYGFLKFENLDMSHRAKLAMSGKIIIRNP 444
Query: 270 MKLGWGKS 277
+K+G+GK+
Sbjct: 445 IKIGYGKA 452
Score = 72 (30.4 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 741 RRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKKSP-SPAAREEKKEANKSERSDR 799
RRG L E+ QGD + ++A E+ +++ S KSP R + + S S +
Sbjct: 707 RRGSL--EKSQGDKRDRKNSASAERDRKHRTTASTEGKSPLKKEDRSDGSAPSTSTASSK 764
Query: 800 KKSPS 804
KSPS
Sbjct: 765 LKSPS 769
>UNIPROTKB|E1BLD4 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074976
EMBL:DAAA02011496 IPI:IPI00697406 ProteinModelPortal:E1BLD4
Ensembl:ENSBTAT00000022610 OMA:KSMNMKE Uniprot:E1BLD4
Length = 756
Score = 102 (41.0 bits), Expect = 7.2e-05, Sum P(3) = 7.2e-05
Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L + NL+ K +E L +F ++G + + I PR + K RG FV F N + +AL
Sbjct: 116 LIIRNLSFKCSEDDLKTVFSQFGTILEVNI--PRKPDGKMRG--FAFVQFKNLLEAGKAL 171
Query: 258 KYLNGKDVQSYEMKLGW 274
K +N K+++ + + W
Sbjct: 172 KGMNMKEIKGRTVAVDW 188
Score = 72 (30.4 bits), Expect = 7.2e-05, Sum P(3) = 7.2e-05
Identities = 29/105 (27%), Positives = 44/105 (41%)
Query: 703 ETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSR-RGDLSSERIQGDSGEDDSAA 761
E +EE E+ S DD E+ E K+ K + + +E + +DDS
Sbjct: 229 EDMEEGENE---SDYDDDEEEEEDKESKLPKSVQIHKRAVKRPAPAESSDEEHSDDDSDL 285
Query: 762 REEKKEANKSERSDRKKSPSPAAREEKKEANKSERSDRKKSPSPV 806
EE+ + E + + S EE E +K +R RK PS V
Sbjct: 286 -EERDSIDGGEDLAQSDTSSEEQEEEDIEVSKKKRKKRKL-PSDV 328
Score = 53 (23.7 bits), Expect = 0.00075, Sum P(4) = 0.00075
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 608 LDANNGNEEDEDLDGAPLSDVDGEDLDGVPLDGAALMKSLQ------RLPHSSSAPDEDD 661
LD NG EE++ +G SD D ++ + + + L KS+Q + P + + DE+
Sbjct: 220 LDQENGREEEDMEEGENESDYDDDEEEEEDKE-SKLPKSVQIHKRAVKRPAPAESSDEEH 278
Query: 662 ID 663
D
Sbjct: 279 SD 280
Score = 51 (23.0 bits), Expect = 7.2e-05, Sum P(3) = 7.2e-05
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 81 REDTSEKGKLYKPQSRLQEDKDSSASKAEEYARLL 115
R + EKGK +S +E K A A++ ARL+
Sbjct: 83 RNKSKEKGKTENSESPEKELKPKKAKVADKKARLI 117
Score = 48 (22.0 bits), Expect = 0.00075, Sum P(4) = 0.00075
Identities = 17/76 (22%), Positives = 32/76 (42%)
Query: 720 DVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKKS 779
+VE E D + S RG R++ D G+ ++ K ++ +++K
Sbjct: 652 EVEHVELPDGKKRRKVLALPSHRGP--KIRLR-DKGKMKPLPPKKPKPQTNHQKQEKQKL 708
Query: 780 PSPAAREEKKEANKSE 795
S +K + NK+E
Sbjct: 709 SSKQVPRKKAKGNKTE 724
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 112 (44.5 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G LN EQ L + F +GP++ + ++ D E R R GF+ F N + A+
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVV---KDRETQRSRGFGFITFTNPEHASDAM 64
Query: 258 KYLNGKDVQSYEMKLGW-GKS 277
+ +NG+ + ++++ GKS
Sbjct: 65 RAMNGESLDGRQIRVDHAGKS 85
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 122 (48.0 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G L+ EQ L ++F +YG ++ + ++ D E R R GFV F N D + A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVV---KDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 258 KYLNGKDVQSYEMKLGW-GKS 277
+NGK V ++++ GKS
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKS 85
>ZFIN|ZDB-GENE-041014-193 [details] [associations]
symbol:trdn "triadin" species:7955 "Danio rerio"
[GO:0016529 "sarcoplasmic reticulum" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0005102 "receptor binding"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR010798
ZFIN:ZDB-GENE-041014-193 GO:GO:0016021 GO:GO:0016529
GeneTree:ENSGT00690000102070 PANTHER:PTHR14106 EMBL:CR381614
EMBL:CU469529 IPI:IPI00975364 Ensembl:ENSDART00000101041
Uniprot:E7F0C1
Length = 785
Score = 91 (37.1 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 21/102 (20%), Positives = 53/102 (51%)
Query: 703 ETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAR 762
+ VEE E+ + + E+ + K++ + + + ++E + ++++ A+
Sbjct: 253 KVVEEEEEDEEEAKE----EKEKKKEEEDEEEAEAEEEEDEEAATEIAAKEKKKEEAGAK 308
Query: 763 EEKK--EANKSERSDRKKSPSPAAREEKKEANKSERSDRKKS 802
EE + E K E+S+ K+ P A EE +E ++E+ +++++
Sbjct: 309 EEDEDEEEGKEEKSEEKEEEEPEAMEEDEEKEEAEKKEKQEA 350
Score = 91 (37.1 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 30/120 (25%), Positives = 50/120 (41%)
Query: 61 PAAKTNKVWVKAGTYDAGRRREDTSEKGKLYKPQSRLQEDKDSSASKAEEYARLLGDKKT 120
P K ++W K + G ED E+ + + E+++ + EEY L +++
Sbjct: 149 PRKKVTEIWAKEMLEEEGEYLEDEEEEEE---EEMDTDEEEEDYEEEEEEYDEELEEEEE 205
Query: 121 ESQRLXXXXXXXXXXXSNLEMFKEELKMIQEERE----ERHKYKGVLKGVYSEEAEPPSA 176
E + L E+ KEE K ++EE E E K + +K V EE + A
Sbjct: 206 EEEELEEEEEEELDEEEEEELEKEEEKELEEEEEDEEDEEEKEEPGVKVVEEEEEDEEEA 265
Score = 90 (36.7 bits), Expect = 9.9e-05, Sum P(2) = 9.9e-05
Identities = 26/112 (23%), Positives = 55/112 (49%)
Query: 701 KWETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGE---D 757
K E EE E+ + + D E+ E + + G + ++ ++GD E +
Sbjct: 318 KEEKSEEKEEEEPEAMEED--EEKEEAEKKEKQEAGAEEEDEDEEEAKEMEGDEAETSKE 375
Query: 758 DSAAREEKKEANKSERSDRKKSPSPAAREEKKEANKSERS----DRKKSPSP 805
++ EE+KE ++E +D++++P +E++E K E + ++K +P P
Sbjct: 376 EAPEDEEEKEEEEAE-TDKEEAPEDEEGKEEEEDEKEEAASAAPEKKAAPIP 426
Score = 90 (36.7 bits), Expect = 9.9e-05, Sum P(2) = 9.9e-05
Identities = 46/218 (21%), Positives = 87/218 (39%)
Query: 605 AVPLDANNGNEEDEDLDGA-----PLSDVDG--EDLDGVPLDGAALMKSLQRLPHSSSAP 657
A P +A +EED+D D P V ED P+ Q+
Sbjct: 427 AAPKEAEEADEEDDDKDAEAQEEPPAGKVTPAEEDETETPIAVTPTTDDDQKDDQIEKKE 486
Query: 658 DEDDID--GVPCTYNITSATMDGEDL-DGVPMDKVKPARAATFIPS-KWETVEENEDSAV 713
D+DD+ + I + + + D+V A I + K E +E E+SA
Sbjct: 487 DDDDVQDAAIAIALGIVAEVEEQATAPEAKDTDEVDTEETAEDIKTLKEEEKDEKEESAE 546
Query: 714 TSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEK-KEANKSE 772
+ + E + ++ ++ + +E+ + D+ + ++ ++ K KEA
Sbjct: 547 REEIAEKAAEPELVAKATAEEVKEAAAEKPVAEAEKEEADTKKKETLLKQRKEKEAPVRT 606
Query: 773 RSDR-KKSP---SPAAREEKKEANKSERSDRKKSPSPV 806
R ++ KK+P + A KK + SE + +P+P+
Sbjct: 607 RLEKAKKAPKAKAAAVNIPKKRSRPSEDMEVSAAPAPI 644
Score = 83 (34.3 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 37/181 (20%), Positives = 74/181 (40%)
Query: 615 EEDEDLDGAPLSDVDGEDLDGVPLDGAALMKSLQRLPHSSSAPDEDDIDGVPCTYNITSA 674
+E+ED + A + + E+ + AA K + + DED+ +G S
Sbjct: 273 KEEEDEEEAEAEEEEDEE---AATEIAAKEKKKEEA--GAKEEDEDEEEGK----EEKSE 323
Query: 675 TMDGEDLDGVPMDKVKPARAATFIPSKWETVEENEDSAVTSSKWDDVEQSESKDDSNSKG 734
+ E+ + + D+ K K E E ED +K ++E E++
Sbjct: 324 EKEEEEPEAMEEDEEKEEAEKK---EKQEAGAEEEDEDEEEAK--EMEGDEAETSKEEAP 378
Query: 735 TGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKKSPSPAAREEKKEANKS 794
+ +++ + E+ E++KE S ++K +P PAA +E +EA++
Sbjct: 379 EDEEEKEEEEAETDKEEAPEDEEGKEEEEDEKEEAASAAPEKKAAPIPAAPKEAEEADEE 438
Query: 795 E 795
+
Sbjct: 439 D 439
>UNIPROTKB|H3BR27 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
Ensembl:ENST00000568578 Uniprot:H3BR27
Length = 78
Score = 106 (42.4 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G LN + E+ L +FG+YG + + +M D E + R FV F + D + A
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLM---KDRETNKSRGFAFVTFESPADAKDAA 66
Query: 258 KYLNGK 263
+ +NGK
Sbjct: 67 RDMNGK 72
>UNIPROTKB|K7GMF5 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
Length = 80
Score = 106 (42.4 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G LN + E+ L +FG+YG + + +M D E + R FV F + D + A
Sbjct: 12 LFIGGLNTETNEKALEAVFGKYGRIVEVLLM---KDRETNKSRGFAFVTFESPADAKDAA 68
Query: 258 KYLNGK 263
+ +NGK
Sbjct: 69 RDMNGK 74
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 132 (51.5 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 35/114 (30%), Positives = 64/114 (56%)
Query: 157 HKY--KGVLKGVYSEEAEPPSAIAI-YQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLM 213
HK+ K G +++E + + + Y++ K + D ++NLY+ NL+P I++++L
Sbjct: 278 HKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQ--SSNLYVKNLDPSISDEKLK 335
Query: 214 EIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQS 267
EIF +G + S K+M R ++G GFVAF ++ A+ L+GK ++S
Sbjct: 336 EIFSPFGTVTSSKVM--RDPNGTSKGS--GFVAFATPEEATEAMSQLSGKMIES 385
Score = 46 (21.3 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 444 ELVEEEVESKTKGSLSNSQRHRLEDFLRNLTPERVKVAEAM 484
E VE E +K G L + + L + + KVAEAM
Sbjct: 568 EQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM 608
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 129 (50.5 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 27/106 (25%), Positives = 54/106 (50%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
++++G+L+ ++ ++ L + F +G ++ ++MW D + R R GFVAF +R D E+A
Sbjct: 177 HIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMW---DMKTGRSRGYGFVAFRDRSDAEKA 233
Query: 257 LKYLNGKDVQSYEMKLGWGKSVXXXXXXXXXXXKMLELTVPPPPSG 302
L ++G+ + S ++ W + +T P P G
Sbjct: 234 LSSMDGEWLGSRAIRCNWANQKGQPSIAQQQAMSAVGMT-PTTPFG 278
Score = 127 (49.8 bits), Expect = 0.00014, P = 0.00014
Identities = 28/83 (33%), Positives = 50/83 (60%)
Query: 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRK 251
+P LY+G L+ ++TE L +IF G + ++KI+ P ++ A+G N GFV + +
Sbjct: 81 EPNKRALYVGGLDARVTEDVLRQIFETTGHVQNVKII-P---DKNAKGYNYGFVEYDDPG 136
Query: 252 DGERALKYLNGKDVQSYEMKLGW 274
+RA++ LNG+ V E+++ W
Sbjct: 137 AADRAMQTLNGRRVHQSEIRVNW 159
>UNIPROTKB|E1C875 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02000941 EMBL:AADN02000942
IPI:IPI00681985 ProteinModelPortal:E1C875
Ensembl:ENSGALT00000031186 Uniprot:E1C875
Length = 182
Score = 116 (45.9 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 27/89 (30%), Positives = 47/89 (52%)
Query: 186 GSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFV 245
GS + DP T L + L+ TE+ L E+F RYGPL + +++ D+ R R FV
Sbjct: 9 GSRANPDP-NTCLGVFGLSLYTTERDLREVFSRYGPLTGVNVVY---DQRTGRSRGFAFV 64
Query: 246 AFMNRKDGERALKYLNGKDVQSYEMKLGW 274
F D + A+++ NG ++ +++ +
Sbjct: 65 YFERIDDSKEAMEHANGMELDGRRIRVDY 93
Score = 38 (18.4 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 385 YRFLFENQSPAHIYYRWKMYSILQGDQPKEW 415
Y + + +SP+ Y R++ S + P+ +
Sbjct: 152 YDYRYRRRSPSPYYSRYRSRSRSRSYSPRRY 182
>TAIR|locus:2024770 [details] [associations]
symbol:SR34 "Serine/Arginine-Rich Protein Splicing Factor
34" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0035061 "interchromatin granule"
evidence=IDA] [GO:0016607 "nuclear speck" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC009525
eggNOG:COG0724 KO:K12890 EMBL:M98340 EMBL:AF001035 EMBL:AY085920
IPI:IPI00521934 IPI:IPI00538714 PIR:F86158 PIR:S71185
RefSeq:NP_563665.3 RefSeq:NP_850933.1 UniGene:At.24497
ProteinModelPortal:O22315 SMR:O22315 IntAct:O22315 STRING:O22315
PaxDb:O22315 PRIDE:O22315 EnsemblPlants:AT1G02840.1
EnsemblPlants:AT1G02840.3 GeneID:839262 KEGG:ath:AT1G02840
GeneFarm:4677 TAIR:At1g02840 InParanoid:O22315 OMA:PGPRSKS
PhylomeDB:O22315 ProtClustDB:CLSN2690659 Genevestigator:O22315
GO:GO:0035061 Uniprot:O22315
Length = 303
Score = 90 (36.7 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
+Y+GNL I E+++ ++F +YGP+ I + P R FV F + +D E A+
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVP------PRPPGYAFVEFDDARDAEDAI 62
Query: 258 KYLNGKDVQSYEMKL 272
+G D + +++
Sbjct: 63 HGRDGYDFDGHRLRV 77
Score = 81 (33.6 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 27/102 (26%), Positives = 43/102 (42%)
Query: 705 VEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREE 764
+++ E S+ + V + +S+ DS S G + S+ S R S S +R
Sbjct: 176 LDDTEFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRS-RSRSRSRSR 234
Query: 765 KKEANKSERSDRKK-SPSPAAREEKKEANKSERSDRKKSPSP 805
+A S RS K S SP R + + + R +SP P
Sbjct: 235 SPKAKSSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRSRSPLP 276
Score = 74 (31.1 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 26/85 (30%), Positives = 40/85 (47%)
Query: 723 QSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKKSPSP 782
+S SK S S+G ++ SR S R + S + S+ R K ++S R KS SP
Sbjct: 208 RSYSKSRSRSRGRSVSRSR----SRSRSRSRSPKAKSSRRSPAKSTSRSP-GPRSKSRSP 262
Query: 783 AAREEKKEANK---SERSDRKKSPS 804
+ R + + S + + KSPS
Sbjct: 263 SPRRSRSRSRSPLPSVQKEGSKSPS 287
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 104 (41.7 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDE-EKARGRNCGFVAFMNR 250
+P T L+LGNL+ + E+F ++G + S++I P E E+ +G G+V F N
Sbjct: 264 EPSDT-LFLGNLSFNADRDAIFELFAKHGEVVSVRI--PTHPETEQPKG--FGYVQFSNM 318
Query: 251 KDGERALKYLNGKDVQSYEMKL 272
+D ++AL L G+ + + ++L
Sbjct: 319 EDAKKALDALQGEYIDNRPVRL 340
Score = 70 (29.7 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 24/100 (24%), Positives = 38/100 (38%)
Query: 83 DTSEKGKLYKPQSRLQEDKDSSASKAEEYARLLGDKKTESQRLXXXXXXXXXXXSNLEMF 142
D+ + + K +S+ S +S EE + K E + S+ E
Sbjct: 73 DSESEAETKKEESKDSSSSSSDSSSDEEEEEEKEETKKEESKESSSSDSSSSSSSDSESE 132
Query: 143 KEEL---KMIQEEREERHKYKGVLKGVYSEEAEPPSAIAI 179
KEE K E+ EE + K +EE E P+ I +
Sbjct: 133 KEESNDKKRKSEDAEEEEDEESSNKKQKNEETEEPATIFV 172
Score = 60 (26.2 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 28/127 (22%), Positives = 45/127 (35%)
Query: 8 KQIAEQKLKAFSIGSMGAKRTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPA----- 62
KQ E+K KA S S + + S + +
Sbjct: 18 KQAKEEKAKAVSSSSSESSSSSSSSSESESESESESESSSSSSSSDSESSSSSSSDSESE 77
Query: 63 AKTNKVWVK---AGTYDAGRRREDTSEKGKLYKPQSRLQEDKDSSASKA---EEYARLLG 116
A+T K K + + D+ E+ EK + K +S+ DSS+S + E
Sbjct: 78 AETKKEESKDSSSSSSDSSSDEEEEEEKEETKKEESKESSSSDSSSSSSSDSESEKEESN 137
Query: 117 DKKTESQ 123
DKK +S+
Sbjct: 138 DKKRKSE 144
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 129 (50.5 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 24/78 (30%), Positives = 45/78 (57%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
N+++G+L+P++ ++ L F ++ L +MW D + +R R GFV F N+ D E A
Sbjct: 174 NIFVGDLSPEVNDEGLRNAFSKFESLKQAHVMW---DMQTSRSRGYGFVTFGNQSDAELA 230
Query: 257 LKYLNGKDVQSYEMKLGW 274
L+ +NG+ + ++ W
Sbjct: 231 LQTMNGEWLCGRAIRCNW 248
Score = 129 (50.5 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 38/138 (27%), Positives = 69/138 (50%)
Query: 140 EMFKEELKMIQEEREERHKYKGVLKGVYSEEAEPPSAIAIYQEETKGSFDSGDPCTTN-- 197
E +++ + Q+E + + S++A+ PS+ ++ S G +N
Sbjct: 21 EQQQQQQQQQQQEHQPEQQQSTESSENESQQAQQPSSQDDEKQVNAASAKEGGREVSNKI 80
Query: 198 LYLGNLNPKITEQQLMEIFGRYG-PLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
LY+GNL +E+ + E+F G P+ +IKI+ +D+ KA G N F+ + + + A
Sbjct: 81 LYVGNLPKSASEETIQELFSVGGNPVKTIKIL---NDKNKA-GFNYAFIEYDTNEVADMA 136
Query: 257 LKYLNGKDVQSYEMKLGW 274
L LNG+ V E+K+ W
Sbjct: 137 LNTLNGRLVDDVEIKVNW 154
>UNIPROTKB|E9PAW1 [details] [associations]
symbol:SF3A1 "Splicing factor 3A subunit 1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000061
InterPro:IPR000626 Pfam:PF00240 Pfam:PF01805 PROSITE:PS50128
SMART:SM00213 SMART:SM00648 GO:GO:0005634 GO:GO:0003723
GO:GO:0006396 InterPro:IPR019955 PROSITE:PS50053 SUPFAM:SSF109905
InterPro:IPR022030 Pfam:PF12230 EMBL:AC004997 KO:K12825 CTD:10291
RefSeq:NP_001005409.1 UniGene:Hs.406277 UniGene:Hs.505597
DNASU:10291 GeneID:10291 KEGG:hsa:10291 HGNC:HGNC:10765
ChiTaRS:SF3A1 GenomeRNAi:10291 NextBio:39000 IPI:IPI00470590
ProteinModelPortal:E9PAW1 SMR:E9PAW1 PRIDE:E9PAW1
Ensembl:ENST00000439242 UCSC:uc021wnt.1 ArrayExpress:E9PAW1
Bgee:E9PAW1 Uniprot:E9PAW1
Length = 728
Score = 131 (51.2 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 35/110 (31%), Positives = 51/110 (46%)
Query: 300 PSGLPFNAQPASKDKHRIPKLRPGEPLTREDLDRLDQILNQAYVKVVVPTDRTLLMLIHR 359
P+G P A P +P P +P E + D ++ V ++ P + ++ +
Sbjct: 2 PAG-PVQAVPPPPP---VPT-EPKQPTEEEASSKEDSAPSKPVVGIIYPPPE-VRNIVDK 55
Query: 360 MVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSILQG 409
FV R GP FEA I EI+NP + FL N P H YYR K+ +G
Sbjct: 56 TASFVARNGPEFEARIRQNEINNPKFNFLNPND-PYHAYYRHKVSEFKEG 104
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 130 (50.8 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 26/78 (33%), Positives = 49/78 (62%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ NL+ + EQ+L ++F ++G + S+K+M R D +RG GFV F ++ ++
Sbjct: 191 TNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVM--RDDSGHSRG--FGFVNFEKHEEAQK 246
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ +NG++V + +G
Sbjct: 247 AVVNMNGREVSGRLLYVG 264
>TAIR|locus:2114643 [details] [associations]
symbol:SR34a "Serine/Arginine-Rich Protein Splicing
Factor 34a" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276234 KO:K12890 OMA:DIREHEI EMBL:BT030067
IPI:IPI00539279 RefSeq:NP_001190041.1 RefSeq:NP_190512.3
UniGene:At.35607 ProteinModelPortal:A2RVS6 SMR:A2RVS6 IntAct:A2RVS6
STRING:A2RVS6 PaxDb:A2RVS6 PRIDE:A2RVS6 EnsemblPlants:AT3G49430.1
EnsemblPlants:AT3G49430.3 GeneID:824105 KEGG:ath:AT3G49430
TAIR:At3g49430 InParanoid:A2RVS6 PhylomeDB:A2RVS6
ProtClustDB:CLSN2918553 Genevestigator:A2RVS6 Uniprot:A2RVS6
Length = 300
Score = 91 (37.1 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 28/98 (28%), Positives = 45/98 (45%)
Query: 710 DSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLS-SERIQGDSGEDDSAAREEKKEA 768
+S+ + S+ +S S+ S S+G G + SR LS S+ + D + +
Sbjct: 199 ESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDLSKSPRRSLSRSISK 258
Query: 769 NKSERSDRKKSPSPAAREEKKEANKSERSDRKKSPSPV 806
++S D+KKSP P A K ++S KSP V
Sbjct: 259 SRSPSPDKKKSP-PRAMSRSKSRSRSRSRSPSKSPPKV 295
Score = 79 (32.9 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
++Y+GNL I E ++ +IF +YG + I++ P C FV F + +D E A
Sbjct: 8 SIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPP-----CYC-FVEFEHSRDAEDA 61
Query: 257 LKYLNGKDVQSYEMKL 272
+K +G ++ +++
Sbjct: 62 IKGRDGYNLDGCRLRV 77
>UNIPROTKB|Q15459 [details] [associations]
symbol:SF3A1 "Splicing factor 3A subunit 1" species:9606
"Homo sapiens" [GO:0005684 "U2-type spliceosomal complex"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;IDA;TAS] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IMP] [GO:0000389 "mRNA 3'-splice site
recognition" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000061
InterPro:IPR000626 Pfam:PF00240 Pfam:PF01805 PROSITE:PS50128
SMART:SM00213 SMART:SM00648 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0003723 InterPro:IPR019955 PROSITE:PS50053 GO:GO:0071013
SUPFAM:SSF109905 GO:GO:0005684 GO:GO:0000389 eggNOG:NOG300902
InterPro:IPR022030 Pfam:PF12230 EMBL:AC004997 KO:K12825
HOGENOM:HOG000238941 CTD:10291 HOVERGEN:HBG059993 OMA:GMPPAKQ
OrthoDB:EOG4N5VWN EMBL:X85237 EMBL:CR456575 EMBL:BC001976
EMBL:BC007684 IPI:IPI00017451 PIR:S60735 RefSeq:NP_001005409.1
RefSeq:NP_005868.1 UniGene:Hs.406277 UniGene:Hs.505597 PDB:1ZKH
PDB:2DT6 PDB:2DT7 PDBsum:1ZKH PDBsum:2DT6 PDBsum:2DT7
ProteinModelPortal:Q15459 SMR:Q15459 DIP:DIP-29164N IntAct:Q15459
MINT:MINT-144269 STRING:Q15459 PhosphoSite:Q15459 DMDM:2498882
PaxDb:Q15459 PeptideAtlas:Q15459 PRIDE:Q15459 DNASU:10291
Ensembl:ENST00000215793 GeneID:10291 KEGG:hsa:10291 UCSC:uc003ahl.3
GeneCards:GC22M030727 HGNC:HGNC:10765 HPA:HPA000690 HPA:HPA030083
MIM:605595 neXtProt:NX_Q15459 PharmGKB:PA35683 InParanoid:Q15459
PhylomeDB:Q15459 ChiTaRS:SF3A1 EvolutionaryTrace:Q15459
GenomeRNAi:10291 NextBio:39000 PMAP-CutDB:Q15459
ArrayExpress:Q15459 Bgee:Q15459 CleanEx:HS_SF3A1
Genevestigator:Q15459 GermOnline:ENSG00000099995 Uniprot:Q15459
Length = 793
Score = 131 (51.2 bits), Expect = 0.00010, P = 0.00010
Identities = 35/110 (31%), Positives = 51/110 (46%)
Query: 300 PSGLPFNAQPASKDKHRIPKLRPGEPLTREDLDRLDQILNQAYVKVVVPTDRTLLMLIHR 359
P+G P A P +P P +P E + D ++ V ++ P + ++ +
Sbjct: 2 PAG-PVQAVPPPPP---VPT-EPKQPTEEEASSKEDSAPSKPVVGIIYPPPE-VRNIVDK 55
Query: 360 MVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMYSILQG 409
FV R GP FEA I EI+NP + FL N P H YYR K+ +G
Sbjct: 56 TASFVARNGPEFEARIRQNEINNPKFNFLNPND-PYHAYYRHKVSEFKEG 104
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 114 (45.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 27/90 (30%), Positives = 50/90 (55%)
Query: 189 DSG--DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVA 246
DSG + TNL + L +T+++L +FG G + S K++ D+ + GFV
Sbjct: 30 DSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLV---RDKITGQSLGYGFVN 86
Query: 247 FMNRKDGERALKYLNGKDVQSYEMKLGWGK 276
+++ KD E+A+ LNG +Q+ +K+ + +
Sbjct: 87 YIDPKDAEKAINTLNGLRLQTKTIKVSYAR 116
Score = 42 (19.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 435 NLFTQGMPDELVEEEVE 451
NL+ G+P + ++E+E
Sbjct: 126 NLYVSGLPKTMTQKELE 142
>UNIPROTKB|J9PBG8 [details] [associations]
symbol:RBM15 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012921
Pfam:PF07744 PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 InterPro:IPR010912 KO:K13190
GeneTree:ENSGT00530000063730 CTD:64783 EMBL:AAEX03004718
RefSeq:XP_537035.1 ProteinModelPortal:J9PBG8
Ensembl:ENSCAFT00000043159 GeneID:479909 KEGG:cfa:479909
Uniprot:J9PBG8
Length = 969
Score = 115 (45.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 34/128 (26%), Positives = 59/128 (46%)
Query: 152 EREERHKYKGVLKGVYSEEAE--PPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITE 209
ERE + + ++ YS E + A ++E + S + L+LGNL+ +TE
Sbjct: 327 ERERDYPFYERVRPAYSLEPRVGAGAGAAPFREVDEISPEDDQRANRTLFLGNLDITVTE 386
Query: 210 QQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYE 269
L F R+G + + I P + + GF+ F N RA ++GK +
Sbjct: 387 SDLRRAFDRFGVITEVDIKRP----SRGQTSTYGFLKFENLDMSHRAKLAMSGKIIIRNP 442
Query: 270 MKLGWGKS 277
+K+G+GK+
Sbjct: 443 IKIGYGKA 450
Score = 67 (28.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 741 RRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKKSP-SPAAREEKKEANKSERSDR 799
RRG L E+ QGD + ++A E+ +++ KSP R + + S S +
Sbjct: 705 RRGSL--EKSQGDKRDRKNSASAERDRKHRTTAPTEGKSPLKKEDRSDGSAPSTSTASSK 762
Query: 800 KKSPS 804
KSPS
Sbjct: 763 LKSPS 767
>UNIPROTKB|F1SIZ8 [details] [associations]
symbol:RBM15B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012921 Pfam:PF07744 GO:GO:0000381 PROSITE:PS50917
Gene3D:2.40.290.10 InterPro:IPR016194 SUPFAM:SSF100939
InterPro:IPR010912 KO:K13190 OMA:KRDSERN
GeneTree:ENSGT00530000063730 EMBL:CU633548 RefSeq:XP_003132286.1
Ensembl:ENSSSCT00000012500 GeneID:100519215 KEGG:ssc:100519215
Uniprot:F1SIZ8
Length = 893
Score = 120 (47.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 30/113 (26%), Positives = 55/113 (48%)
Query: 165 GVYSEEAEPPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLAS 224
G+Y + P A+ +E+ D T NL++GNL+ ++E +L F +YG +
Sbjct: 311 GLYDDRGRPYGYPAVCEEDLMPEDDQR--ATRNLFIGNLDHSVSEVELRRAFEKYGIIEE 368
Query: 225 IKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKS 277
+ I P + +G F+ F N RA ++G+ + +K+G+GK+
Sbjct: 369 VVIKRPA----RGQGGAYAFLKFQNLDMAHRAKVAMSGRVIGRNPIKIGYGKA 417
Score = 64 (27.6 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 25/107 (23%), Positives = 45/107 (42%)
Query: 698 IPSKWETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGED 757
+P WE E + +++S + S ++ S +KG G + R D + ER + ++
Sbjct: 590 LPKPWE--ERRKRRSLSSDR-GRTTHSPYEERSRTKGGGQQADRGSDRTPERSRKENHSS 646
Query: 758 DSAAREEKKEANKS-----ERSDRKKSPSPAAREEKKEANKSERSDR 799
+ + S ERS +P + KK +SER+ R
Sbjct: 647 EGTKELSGNSLSNSRHGAEERSHHHHHEAPDSSHGKK-TRESERNHR 692
Score = 61 (26.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 25/98 (25%), Positives = 39/98 (39%)
Query: 708 NEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKE 767
+ D W S+S D NS G + S R S ER GD EE+++
Sbjct: 544 DRDRTFLEGDW--TSPSKSSDRRNSL-EGYSRSVRSR-SGERWGGDGDRGLPKPWEERRK 599
Query: 768 ANKSERSDRKKSPSPAAREEKKEANKSERSDRKKSPSP 805
+S SDR ++ E + +++DR +P
Sbjct: 600 -RRSLSSDRGRTTHSPYEERSRTKGGGQQADRGSDRTP 636
Score = 37 (18.1 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 391 NQSPAHIYYRWKMYSILQGDQPKEWRTNEFR 421
+++P H+ Y + + L+GD ++++ R
Sbjct: 534 DRTPPHLLYSDRDRTFLEGDWTSPSKSSDRR 564
>UNIPROTKB|Q96T37 [details] [associations]
symbol:RBM15 "Putative RNA-binding protein 15" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0019048 "virus-host
interaction" evidence=IEA] [GO:0001569 "patterning of blood
vessels" evidence=IEA] [GO:0007221 "positive regulation of
transcription of Notch receptor target" evidence=IEA] [GO:0045638
"negative regulation of myeloid cell differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0060412
"ventricular septum morphogenesis" evidence=IEA] [GO:0060674
"placenta blood vessel development" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0019048 GO:GO:0000166
EMBL:CH471122 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0001569
GO:GO:0048536 InterPro:IPR012921 Pfam:PF07744 GO:GO:0045638
GO:GO:0060412 GO:GO:0060674 eggNOG:NOG250829 PROSITE:PS50917
Gene3D:2.40.290.10 InterPro:IPR016194 SUPFAM:SSF100939
InterPro:IPR010912 EMBL:AF364035 EMBL:AJ303089 EMBL:AJ303090
EMBL:AL355488 GO:GO:0007221 HOVERGEN:HBG058366 KO:K13190
EMBL:AF368062 EMBL:AF368063 EMBL:AF368064 EMBL:AJ297259
EMBL:AK022541 EMBL:AK025596 EMBL:BC006397 EMBL:BC062316
EMBL:BC098140 EMBL:BC103507 IPI:IPI00102752 IPI:IPI00220716
IPI:IPI00220717 RefSeq:NP_001188474.1 RefSeq:NP_073605.4
UniGene:Hs.435947 UniGene:Hs.708172 ProteinModelPortal:Q96T37
SMR:Q96T37 IntAct:Q96T37 STRING:Q96T37 PhosphoSite:Q96T37
DMDM:32363506 PaxDb:Q96T37 PRIDE:Q96T37 DNASU:64783
Ensembl:ENST00000369784 GeneID:64783 KEGG:hsa:64783 UCSC:uc001dzl.1
UCSC:uc001dzm.1 UCSC:uc021orn.1 CTD:64783 GeneCards:GC01P110876
HGNC:HGNC:14959 HPA:CAB015201 HPA:HPA019824 MIM:606077
neXtProt:NX_Q96T37 PharmGKB:PA34264 InParanoid:Q96T37 OMA:DYLVMIV
OrthoDB:EOG41ZF99 PhylomeDB:Q96T37 ChiTaRS:RBM15 GenomeRNAi:64783
NextBio:66822 Bgee:Q96T37 Genevestigator:Q96T37 Uniprot:Q96T37
Length = 977
Score = 115 (45.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 34/128 (26%), Positives = 59/128 (46%)
Query: 152 EREERHKYKGVLKGVYSEEAE--PPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITE 209
ERE + + ++ YS E + A ++E + S + L+LGNL+ +TE
Sbjct: 328 ERERDYPFYERVRPAYSLEPRVGAGAGAAPFREVDEISPEDDQRANRTLFLGNLDITVTE 387
Query: 210 QQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYE 269
L F R+G + + I P + + GF+ F N RA ++GK +
Sbjct: 388 SDLRRAFDRFGVITEVDIKRP----SRGQTSTYGFLKFENLDMSHRAKLAMSGKIIIRNP 443
Query: 270 MKLGWGKS 277
+K+G+GK+
Sbjct: 444 IKIGYGKA 451
Score = 67 (28.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 741 RRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKKSP-SPAAREEKKEANKSERSDR 799
RRG L E+ QGD + ++A E+ +++ KSP R + + S S +
Sbjct: 705 RRGSL--EKSQGDKRDRKNSASAERDRKHRTTAPTEGKSPLKKEDRSDGSAPSTSTASSK 762
Query: 800 KKSPS 804
KSPS
Sbjct: 763 LKSPS 767
Score = 58 (25.5 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 24/86 (27%), Positives = 39/86 (45%)
Query: 722 EQSESKDDSNS---KGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKK 778
E S S+D NS + + L R + R + + D R+ K A+ +ER + +
Sbjct: 676 ELSSSRDRYNSDNDRSSRLLLERPSPIRDRRGSLEKSQGDK--RDRKNSAS-AERDRKHR 732
Query: 779 SPSPAAREEKKEANKSERSDRKKSPS 804
+ +P E K K +RSD +PS
Sbjct: 733 TTAPT--EGKSPLKKEDRSDGS-APS 755
>UNIPROTKB|E2R9C6 [details] [associations]
symbol:RBM15 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0060674 "placenta blood vessel development"
evidence=IEA] [GO:0060412 "ventricular septum morphogenesis"
evidence=IEA] [GO:0048536 "spleen development" evidence=IEA]
[GO:0045638 "negative regulation of myeloid cell differentiation"
evidence=IEA] [GO:0007221 "positive regulation of transcription of
Notch receptor target" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001569 "patterning of blood vessels"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000122 GO:GO:0001569
GO:GO:0048536 InterPro:IPR012921 Pfam:PF07744 GO:GO:0045638
GO:GO:0060412 GO:GO:0060674 PROSITE:PS50917 Gene3D:2.40.290.10
InterPro:IPR016194 SUPFAM:SSF100939 InterPro:IPR010912
GO:GO:0007221 GeneTree:ENSGT00530000063730 OMA:DYLVMIV
EMBL:AAEX03004718 ProteinModelPortal:E2R9C6
Ensembl:ENSCAFT00000031467 Uniprot:E2R9C6
Length = 977
Score = 115 (45.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 34/128 (26%), Positives = 59/128 (46%)
Query: 152 EREERHKYKGVLKGVYSEEAE--PPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITE 209
ERE + + ++ YS E + A ++E + S + L+LGNL+ +TE
Sbjct: 327 ERERDYPFYERVRPAYSLEPRVGAGAGAAPFREVDEISPEDDQRANRTLFLGNLDITVTE 386
Query: 210 QQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYE 269
L F R+G + + I P + + GF+ F N RA ++GK +
Sbjct: 387 SDLRRAFDRFGVITEVDIKRP----SRGQTSTYGFLKFENLDMSHRAKLAMSGKIIIRNP 442
Query: 270 MKLGWGKS 277
+K+G+GK+
Sbjct: 443 IKIGYGKA 450
Score = 67 (28.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 741 RRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKKSP-SPAAREEKKEANKSERSDR 799
RRG L E+ QGD + ++A E+ +++ KSP R + + S S +
Sbjct: 705 RRGSL--EKSQGDKRDRKNSASAERDRKHRTTAPTEGKSPLKKEDRSDGSAPSTSTASSK 762
Query: 800 KKSPS 804
KSPS
Sbjct: 763 LKSPS 767
>TAIR|locus:2167649 [details] [associations]
symbol:CBP20 "CAP-binding protein 20" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000339 "RNA cap
binding" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0005845 "mRNA cap binding complex" evidence=TAS]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA;IMP] [GO:0031053 "primary miRNA processing"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=RCA] [GO:0009086 "methionine biosynthetic
process" evidence=RCA] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AB005239 GO:GO:0005845 eggNOG:COG0724
GO:GO:0006370 GO:GO:0031053 GO:GO:0000339 HOGENOM:HOG000217589
PANTHER:PTHR18847 GO:GO:0000394 EMBL:AF140219 EMBL:BT004813
EMBL:AK227850 IPI:IPI00549008 RefSeq:NP_001078705.1
RefSeq:NP_199233.1 UniGene:At.23549 HSSP:P52298
ProteinModelPortal:Q9XFD1 SMR:Q9XFD1 IntAct:Q9XFD1 STRING:Q9XFD1
PaxDb:Q9XFD1 PRIDE:Q9XFD1 EnsemblPlants:AT5G44200.1
EnsemblPlants:AT5G44200.2 GeneID:834443 KEGG:ath:AT5G44200
TAIR:At5g44200 InParanoid:Q9XFD1 KO:K12883 OMA:YISGTIL
PhylomeDB:Q9XFD1 ProtClustDB:CLSN2687230 Genevestigator:Q9XFD1
Uniprot:Q9XFD1
Length = 257
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 34/96 (35%), Positives = 51/96 (53%)
Query: 184 TKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCG 243
T+ FD +T +Y+GN++ TE+QL E+F R G + I IM +K CG
Sbjct: 22 TQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEIKKI-IM----GLDKNTKTPCG 76
Query: 244 F--VAFMNRKDGERALKYLNGK--DVQSYEMKLGWG 275
F V F +R+D E A+KY++G D + + WG
Sbjct: 77 FCFVLFYSREDTEDAVKYISGTILDDRPIRVDFDWG 112
>POMBASE|SPBC23E6.01c [details] [associations]
symbol:SPBC23E6.01c "mRNA processing factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071004 "U2-type prespliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC23E6.01c GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000932
eggNOG:COG0724 GO:GO:0071004 OrthoDB:EOG44BFB8 GO:GO:0070935
HOGENOM:HOG000186228 RefSeq:NP_596601.2 ProteinModelPortal:O60176
STRING:O60176 EnsemblFungi:SPBC23E6.01c.1 GeneID:2540551
KEGG:spo:SPBC23E6.01c OMA:HEASSAM NextBio:20801677 Uniprot:O60176
Length = 473
Score = 130 (50.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 34/135 (25%), Positives = 60/135 (44%)
Query: 192 DPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRK 251
D + +++G L+ ++E++L +F +G + +KI P G+ CGFV F+NR+
Sbjct: 299 DTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP-P--------GKGCGFVQFVNRQ 349
Query: 252 DGERALKYLNGKDVQSYEMKLGWGKSVXXXXXXXXXXXKMLELTVPPPPSGLPFNAQPAS 311
E A+ L G + + ++L WG++ + T P S P + P
Sbjct: 350 SAEIAINQLQGYPLGNSRIRLSWGRNQNPIAAPALNYQSQVSQTTIPATSLFPAMSLPPQ 409
Query: 312 KDKHRIPKLRPGEPL 326
P + P PL
Sbjct: 410 AQFSPYPAVAPS-PL 423
Score = 43 (20.2 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 101 KDSSASKAEEYARLLGD 117
++ S SKA EY+ +GD
Sbjct: 176 REKSISKASEYSIFVGD 192
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 126 (49.4 bits), Expect = 0.00012, P = 0.00012
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 189 DSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFM 248
D G P T LY+GNL+ +TE ++++F + GP S K++ E + C FV F
Sbjct: 4 DDGQPRT--LYVGNLSRDVTEVLILQLFSQIGPCKSCKMI----TEHTSNDPYC-FVEFY 56
Query: 249 NRKDGERALKYLNGKDVQSYEMKLGW 274
+D AL +NG+ + E+K+ W
Sbjct: 57 EHRDAAAALAAMNGRKILGKEVKVNW 82
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 129 (50.5 bits), Expect = 0.00012, P = 0.00012
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ NL+ + E+ L ++F ++G + S+K+M R D +RG GFV F +D ++
Sbjct: 191 TNIYVKNLHVDVDERCLQDLFSQFGKILSVKVM--RDDSGHSRG--FGFVNFEKHEDAQK 246
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ +NGK+V + +G
Sbjct: 247 AVTDMNGKEVSGRLLYVG 264
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 126 (49.4 bits), Expect = 0.00012, P = 0.00012
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 189 DSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFM 248
D G P T LY+GNL+ +TE ++++F + GP S K++ E + C FV F
Sbjct: 4 DDGQPRT--LYVGNLSRDVTEVLILQLFSQIGPCKSCKMI----TEHTSNDPYC-FVEFY 56
Query: 249 NRKDGERALKYLNGKDVQSYEMKLGW 274
+D AL +NG+ + E+K+ W
Sbjct: 57 EHRDAAAALAAMNGRKILGKEVKVNW 82
>UNIPROTKB|F6RM04 [details] [associations]
symbol:RBM15B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012921
Pfam:PF07744 PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 InterPro:IPR010912 GeneTree:ENSGT00530000063730
EMBL:DAAA02054396 IPI:IPI00705216 Ensembl:ENSBTAT00000008515
OMA:ISHELDD Uniprot:F6RM04
Length = 940
Score = 119 (46.9 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 30/113 (26%), Positives = 55/113 (48%)
Query: 165 GVYSEEAEPPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLAS 224
G+Y + P A+ +E+ D T NL++GNL+ ++E +L F +YG +
Sbjct: 361 GLYDDRGRPYGYPAVCEEDLMPEDDQR--ATRNLFIGNLDHSVSEVELRRAFEKYGIIEE 418
Query: 225 IKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKS 277
+ I P + +G F+ F N RA ++G+ + +K+G+GK+
Sbjct: 419 VVIKRPA----RGQGGAYAFLKFQNLDMAHRAKVGMSGRVIGRNPIKIGYGKA 467
Score = 68 (29.0 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 25/113 (22%), Positives = 46/113 (40%)
Query: 698 IPSKWETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGED 757
+P WE + + +++S + S ++ S +KG G + R D + ER + ++
Sbjct: 640 LPKAWE--DRRKRRSLSSDR-GRATHSPYEERSRTKGGGQPADRGSDRTPERSRKENHSS 696
Query: 758 DSAAREEKKEANKS-----ERSDRKKSPSPAAREEKKEANKSERSDRKKSPSP 805
+ + S ERS +P + KK +SER+ R P
Sbjct: 697 EGTKESGSNSLSNSRHGAEERSHHHHHEAPDSSHGKK-TRESERNHRTTEAEP 748
Score = 60 (26.2 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 26/96 (27%), Positives = 40/96 (41%)
Query: 710 DSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEAN 769
D T + D S+S D NS G + S R S ER GD A E++++
Sbjct: 594 DRERTFLEGDWTSPSKSSDRRNSL-EGYSRSVRSR-SGERWGGDGDRGLPKAWEDRRK-R 650
Query: 770 KSERSDRKKSPSPAAREEKKEANKSERSDRKKSPSP 805
+S SDR ++ E + + +DR +P
Sbjct: 651 RSLSSDRGRATHSPYEERSRTKGGGQPADRGSDRTP 686
Score = 38 (18.4 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 391 NQSPAHIYYRWKMYSILQGDQPKEWRTNEFR 421
+++P H+ Y + + L+GD ++++ R
Sbjct: 584 DRTPPHLLYSDRERTFLEGDWTSPSKSSDRR 614
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 118 (46.6 bits), Expect = 0.00012, P = 0.00012
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L +G L+ EQ L ++F +YG ++ + ++ D E R R GFV F N D + A+
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVV---KDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 258 KYLNGKDVQSYEMKLGW-GKS 277
+NGK V ++++ GKS
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKS 85
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 138 (53.6 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 23/78 (29%), Positives = 49/78 (62%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ N + +++L ++FG++GP S+K+M +E + + GFV+F +D ++
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ +NGK++ ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
Score = 37 (18.1 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 297 PPPPSGLPFNAQPASKDK------HRIPKLRPGEPLTRE 329
P PPSG A P ++++ +I +LRP T +
Sbjct: 362 PAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQ 400
>CGD|CAL0005156 [details] [associations]
symbol:SRP40 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
CGD:CAL0005156 Pfam:PF05022 EMBL:AACQ01000080 eggNOG:NOG318801
InterPro:IPR007718 RefSeq:XP_715790.1 STRING:Q5A1Y5 GeneID:3642605
KEGG:cal:CaO19.2859 Uniprot:Q5A1Y5
Length = 428
Score = 130 (50.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 42/152 (27%), Positives = 70/152 (46%)
Query: 653 SSSAPDEDDIDGVPCTYNITSATMDGEDLDGVPMDKVKPARAATFIPSKWETVEENEDSA 712
SSS D D + + S++ D ED D + K A E + ED+
Sbjct: 158 SSSDSDSSSSDSESSSSDSESSSSDSEDSDDEEDKEDKEAEKDNKDSEDSENEKVEEDNK 217
Query: 713 VTSSKWDDVEQSESKDDSNSKGTGLT-SSRRGDLSSERIQGDSGEDDSAAREEKKEANKS 771
TSS D S+SK DS+S + + SS D SS+ S + DS++ + + S
Sbjct: 218 DTSS--DSSSSSDSKSDSDSDSSSSSDSSSDSDSSSDSDSSSSSDSDSSSSSDSDSDSDS 275
Query: 772 ERSDRKKSPSPAAREEKKEANKSERSDRKKSP 803
+ SD + S ++ E+++ ++ SE + +K P
Sbjct: 276 D-SDSDDNSSESSSEDEESSSDSESKEEQKQP 306
Score = 41 (19.5 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 432 PPMNLFTQGMPDELVEEEVESKTKGSLSNSQ 462
P ++ + + DE+ +E +SK + S S+S+
Sbjct: 112 PKVSKQLESIIDEVENQEKKSKPRNSSSDSE 142
>UNIPROTKB|Q5A1Y5 [details] [associations]
symbol:SRP40 "Putative uncharacterized protein SRP40"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] CGD:CAL0005156 Pfam:PF05022 EMBL:AACQ01000080
eggNOG:NOG318801 InterPro:IPR007718 RefSeq:XP_715790.1
STRING:Q5A1Y5 GeneID:3642605 KEGG:cal:CaO19.2859 Uniprot:Q5A1Y5
Length = 428
Score = 130 (50.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 42/152 (27%), Positives = 70/152 (46%)
Query: 653 SSSAPDEDDIDGVPCTYNITSATMDGEDLDGVPMDKVKPARAATFIPSKWETVEENEDSA 712
SSS D D + + S++ D ED D + K A E + ED+
Sbjct: 158 SSSDSDSSSSDSESSSSDSESSSSDSEDSDDEEDKEDKEAEKDNKDSEDSENEKVEEDNK 217
Query: 713 VTSSKWDDVEQSESKDDSNSKGTGLT-SSRRGDLSSERIQGDSGEDDSAAREEKKEANKS 771
TSS D S+SK DS+S + + SS D SS+ S + DS++ + + S
Sbjct: 218 DTSS--DSSSSSDSKSDSDSDSSSSSDSSSDSDSSSDSDSSSSSDSDSSSSSDSDSDSDS 275
Query: 772 ERSDRKKSPSPAAREEKKEANKSERSDRKKSP 803
+ SD + S ++ E+++ ++ SE + +K P
Sbjct: 276 D-SDSDDNSSESSSEDEESSSDSESKEEQKQP 306
Score = 41 (19.5 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 432 PPMNLFTQGMPDELVEEEVESKTKGSLSNSQ 462
P ++ + + DE+ +E +SK + S S+S+
Sbjct: 112 PKVSKQLESIIDEVENQEKKSKPRNSSSDSE 142
>UNIPROTKB|F1Q237 [details] [associations]
symbol:F1Q237 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104403 EMBL:AAEX03004837
Ensembl:ENSCAFT00000004966 OMA:DNTRSED Uniprot:F1Q237
Length = 261
Score = 88 (36.0 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 24/87 (27%), Positives = 37/87 (42%)
Query: 716 SKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGD-SGEDDSAAREEKKEANKSERS 774
S+ E+ S+ S + S R + R Q S D+ +E KKE K +
Sbjct: 119 SRSQSYERRRSRSRSFDYNNRRSYSPRNSRPAGRPQRSRSHSDNDRKKERKKERKKERKK 178
Query: 775 DRKKSPSPAAREEKKEANKSERSDRKK 801
+RKK +E KKE K + + +K
Sbjct: 179 ERKKRKKERKKERKKERKKERKKEERK 205
Score = 85 (35.0 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 24/83 (28%), Positives = 36/83 (43%)
Query: 720 DVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKKS 779
D S NS+ G R ++R + E ++E+K+ K + +RKK
Sbjct: 135 DYNNRRSYSPRNSRPAGRPQRSRSHSDNDRKKERKKERKKERKKERKKRKKERKKERKKE 194
Query: 780 PSPAAREEKKEANKSERS-DRKK 801
+E KKE K ER +RKK
Sbjct: 195 RK---KERKKEERKKERKKERKK 214
Score = 79 (32.9 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 22/71 (30%), Positives = 34/71 (47%)
Query: 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKD 252
P T+L++ N+ + L FGRYGP+ + + P D R +V F + +D
Sbjct: 7 PPNTSLFVRNVADNTRSEDLPREFGRYGPIVDVYV--PL-DFYTRHPRGFAYVQFEDVRD 63
Query: 253 GERALKYLNGK 263
E AL L+ K
Sbjct: 64 AEDALHNLDRK 74
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 120 (47.3 bits), Expect = 0.00014, P = 0.00014
Identities = 32/126 (25%), Positives = 59/126 (46%)
Query: 180 YQEETKGSFDSGDPCT-TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKAR 238
+ EE + D T TN+++ N+ I +++L E+F YGP S+K++ R K++
Sbjct: 18 FPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVI--RDASGKSK 75
Query: 239 GRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVXXXXXXXXXXXKMLELTVPP 298
G GFV + + ++A+ L+GK + + +G + + L L
Sbjct: 76 G--FGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKS 133
Query: 299 PPSGLP 304
P G+P
Sbjct: 134 RPPGVP 139
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 111 (44.1 bits), Expect = 0.00014, P = 0.00014
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G LN EQ L + F +GP++ + ++ D E R R GF+ F N + A+
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVV---KDRETQRSRGFGFITFTNPEHASVAM 64
Query: 258 KYLNGKDVQSYEMKLGW-GKS 277
+ +NG+ + ++++ GKS
Sbjct: 65 RAMNGESLDGRQIRVDHAGKS 85
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 113 (44.8 bits), Expect = 0.00014, P = 0.00014
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G L+ EQ L +F +YG + + ++ D E R R GFV F N +D + A+
Sbjct: 8 LFVGGLSFDTDEQCLETVFSKYGQIQEVVVV---KDRETKRSRGFGFVTFENCEDAKDAM 64
Query: 258 KYLNGKDVQSYEMKLGW-GKS 277
+NGK V ++++ GKS
Sbjct: 65 AGMNGKTVDGRQIRVDQAGKS 85
>WB|WBGene00006961 [details] [associations]
symbol:xnp-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000003 "reproduction"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0040025 "vulval development" evidence=IMP] [GO:0006915
"apoptotic process" evidence=IMP] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0006915 GO:GO:0008406
GO:GO:0003677 GO:GO:0006281 GO:GO:0040035 GO:GO:0004386
GO:GO:0040025 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AF134186 EMBL:FO080106 PIR:T34036
RefSeq:NP_001020958.1 ProteinModelPortal:Q9U7E0 SMR:Q9U7E0
STRING:Q9U7E0 PaxDb:Q9U7E0 GeneID:172077 KEGG:cel:CELE_B0041.7
UCSC:B0041.7 CTD:172077 WormBase:B0041.7 HOGENOM:HOG000199608
InParanoid:Q9U7E0 KO:K10779 NextBio:873923 Uniprot:Q9U7E0
Length = 1359
Score = 132 (51.5 bits), Expect = 0.00015, P = 0.00015
Identities = 52/196 (26%), Positives = 81/196 (41%)
Query: 613 GNEEDEDLDGAPLSDVDGEDLDGV-PLDGAALMKSLQRLPHSSSAPDEDDIDGVPCTYN- 670
G E ED DG + D EDL+ ++ K Q+L + P
Sbjct: 4 GVSESEDSDGHVIED---EDLEMARQIENERKEKRAQKLKEKREREGKPPPKKRPAKKRK 60
Query: 671 ITSATMDGEDLDGVPMDKVKPARAATFIPSKWETVEENEDSAVTSSKWDDVEQSESKDDS 730
+S+ D +D + P K +R S+ + +E ED + SK V+Q + K+ S
Sbjct: 61 ASSSEEDDDDEEESPRKSSKKSRKRAKSESESDESDEEEDRKKSKSK-KKVDQKK-KEKS 118
Query: 731 NSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKKSPSPAAREE--K 788
K T +SS D ER Q + ++ E+++ +RK S +E+ K
Sbjct: 119 KKKRT-TSSSEDEDSDEEREQKSKKKSKKTKKQTSSESSEESEEERKVKKSKKNKEKSVK 177
Query: 789 KEANKSERSDRKKSPS 804
K A SE SD + PS
Sbjct: 178 KRAETSEESDEDEKPS 193
>UNIPROTKB|G3XAP0 [details] [associations]
symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
Length = 269
Score = 122 (48.0 bits), Expect = 0.00016, P = 0.00016
Identities = 34/108 (31%), Positives = 55/108 (50%)
Query: 166 VYSEEAEPPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASI 225
V + +AE A+ KG+ G P LY+G+L+ ITE L IF +G + +I
Sbjct: 68 VQASQAEKNRLAAMANNLQKGN---GGPM--RLYVGSLHFNITEDMLRGIFEPFGKIDNI 122
Query: 226 KIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273
+M D + R + GF+ F + + RAL+ LNG ++ M++G
Sbjct: 123 VLM---KDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVG 167
>DICTYBASE|DDB_G0286299 [details] [associations]
symbol:DDB_G0286299 "unknown" species:44689
"Dictyostelium discoideum" [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND] [GO:0044351
"macropinocytosis" evidence=RCA] dictyBase:DDB_G0286299
EMBL:AAFI02000085 RefSeq:XP_637843.1 EnsemblProtists:DDB0186915
GeneID:8625557 KEGG:ddi:DDB_G0286299 OMA:THETENA Uniprot:Q54LY8
Length = 451
Score = 111 (44.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 39/169 (23%), Positives = 76/169 (44%)
Query: 645 KSLQRLPHSSSAPDEDDIDGVPCTYNITSATMDGEDLDGVPMDKVKPARAATFIPSKWET 704
K + P + P ++ +S + + ++ + P + K ++ K +
Sbjct: 169 KKKEAKPKKEAKPKKETTKKEKEATTTSSDSTEKKEKEEKPKKEKKISKKDQAAAEKKKD 228
Query: 705 VEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREE 764
+++ + T++ D + +E+K++ K T + + GD E +AA EE
Sbjct: 229 GDDSTTTTATATTTTD-DSTENKEEKKDKKT-TKKPAAAEKKKVKKDGDDDETAAAATEE 286
Query: 765 KKEANKSERSDRK--KSPS----PAAREEKKEA-NKSERSD-RKKSPSP 805
KK+ KSE ++K K P+ PAA E+KK A N +++ D K +P
Sbjct: 287 KKDEEKSEEKEKKETKKPAAPKKPAAAEKKKTAANPTDKKDGENKDVTP 335
Score = 61 (26.5 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 28/111 (25%), Positives = 49/111 (44%)
Query: 76 DAGRRREDTSEKGKLYKPQSRLQEDKDSSASKAE-EYARLLGDKKTESQRLXXXXXXXXX 134
D R+E +K K +P+ +E K+ + KA+ E + GD++ + ++
Sbjct: 76 DTKERKEKKEKKEK--EPKEP-KEPKEKAKKKAKTEKKKDDGDEEEDEEK---EEDEEQK 129
Query: 135 XXSNLEMFKEELKMIQEEREERHKYKGVLKGVYSEEAEPPSAIAIYQEETK 185
+ E EE + Q E++ K K K V +E EP A ++E K
Sbjct: 130 EEQSQEEDSEESEEEQNSDEDKKKKKKQAKKVAKKETEPKKKEAKPKKEAK 180
>POMBASE|SPBC29A3.07c [details] [associations]
symbol:sab14 "U2 snRNP-associated protein SF3B14
ortholog (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000384 "first spliceosomal transesterification activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISM] [GO:0005681
"spliceosomal complex" evidence=NAS] [GO:0005686 "U2 snRNP"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBC29A3.07c GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0005686 eggNOG:COG0724 GO:GO:0045292 HOGENOM:HOG000276232
PIR:T40078 HSSP:Q9Y3B4 ProteinModelPortal:O59670 IntAct:O59670
STRING:O59670 OrthoDB:EOG4HB1W3 NextBio:20801589 GO:GO:0000384
Uniprot:O59670
Length = 115
Score = 103 (41.3 bits), Expect = 0.00017, P = 0.00017
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++ NL+ KIT +++ ++FGRYGP+ I++ + + RG FV + N +D RA
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRL----GNTVQTRGT--AFVVYENVQDARRAC 67
Query: 258 KYLNG 262
+ L+G
Sbjct: 68 EKLSG 72
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 127 (49.8 bits), Expect = 0.00018, P = 0.00018
Identities = 26/84 (30%), Positives = 48/84 (57%)
Query: 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKD 252
P +++LY+G+L P+++EQ L EIF + G +++I++ D R + +V + N D
Sbjct: 7 PISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVC---RDTNTRRSLSYAYVNYYNGAD 63
Query: 253 GERALKYLNGKDVQSYEMKLGWGK 276
ERAL LN ++ ++ W +
Sbjct: 64 AERALDTLNNTPIRGKACRIMWSQ 87
>DICTYBASE|DDB_G0279549 [details] [associations]
symbol:eif3G "eukaryotic translation initiation
factor 3 (eIF3) subunit G" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISS] [GO:0006413
"translational initiation" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0279549 GO:GO:0000166
GenomeReviews:CM000152_GR Gene3D:3.30.70.330 GO:GO:0003743
EMBL:AAFI02000031 eggNOG:COG0724 GO:GO:0005852 HSSP:O75821
KO:K03248 HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352
Pfam:PF12353 OMA:LILCVEW RefSeq:XP_641693.1
ProteinModelPortal:Q54WM4 STRING:Q54WM4 PRIDE:Q54WM4
EnsemblProtists:DDB0233922 GeneID:8622102 KEGG:ddi:DDB_G0279549
Uniprot:Q54WM4
Length = 233
Score = 120 (47.3 bits), Expect = 0.00018, P = 0.00018
Identities = 31/112 (27%), Positives = 56/112 (50%)
Query: 168 SEEAEPPSAIAIYQEETKGSFDSGDPCTTN---LYLGNLNPKITEQQLMEIFGRYGPLAS 224
SE+ E P + +G + P ++ + + NL+ TE+ L E+FG++GP++
Sbjct: 121 SEKEEKPISNKYIAPNLRGGYTGSAPSGSDVPSIMVSNLSQNATEKDLYELFGQFGPVSR 180
Query: 225 IKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGK 276
+ I P+S E ++G +V + + E+ALK LNG + L + K
Sbjct: 181 VSI--PKSMEGSSKG--FAYVTYNHLDSAEKALKQLNGHRYDYLVLSLEFAK 228
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 107 (42.7 bits), Expect = 0.00019, P = 0.00019
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L+LG LN EQ L + F +GP++ + ++ D E R R F+ F N + A+
Sbjct: 8 LFLGGLNFNTNEQALEDHFSSFGPISEVVVV---KDRETQRSRGFCFITFTNPEHASDAM 64
Query: 258 KYLNGKDVQSYEMKL 272
+ +NGK + ++++
Sbjct: 65 RPMNGKSLDGRQIRV 79
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 122 (48.0 bits), Expect = 0.00020, P = 0.00020
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G L+ EQ L ++F +YG ++ + ++ D E R R GFV F N D + A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVV---KDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 258 KYLNGKDVQSYEMKLGW-GKS 277
+NGK V ++++ GKS
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKS 85
>TAIR|locus:2147625 [details] [associations]
symbol:AT5G19960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HSSP:P33240 EMBL:AY093121 EMBL:BT003382 IPI:IPI00545520
RefSeq:NP_568388.1 UniGene:At.31237 ProteinModelPortal:Q8RWF8
SMR:Q8RWF8 IntAct:Q8RWF8 STRING:Q8RWF8 PRIDE:Q8RWF8
EnsemblPlants:AT5G19960.1 GeneID:832118 KEGG:ath:AT5G19960
TAIR:At5g19960 InParanoid:Q8RWF8 OMA:GKCYGFV PhylomeDB:Q8RWF8
ProtClustDB:CLSN2689809 ArrayExpress:Q8RWF8 Genevestigator:Q8RWF8
Uniprot:Q8RWF8
Length = 337
Score = 113 (44.8 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 24/69 (34%), Positives = 42/69 (60%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
++Y+G L ITE+ + +F YG + ++KI+ RS RG+ GFV F NR+ + A
Sbjct: 8 SVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRS----VRGKCYGFVTFSNRRSADDA 63
Query: 257 LKYLNGKDV 265
++ ++GK +
Sbjct: 64 IEDMDGKSI 72
Score = 54 (24.1 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 31/129 (24%), Positives = 53/129 (41%)
Query: 407 LQGDQPKEWRTNEFRMFDGGSVWRPPPMNLFTQGMPDELVEEEVESKTKGSLSNSQRHRL 466
+ G E R+ E + D + + F+ D V+E++E+ K R L
Sbjct: 190 INGTSAHEGRSQETKREDSTILDGGRGRDHFSNSSGDHQVKEDLEALIK------MREAL 243
Query: 467 EDFLRNLTPERVKVAEAMVFCME---HSDAAEEIC---ECIMESLSNESTALHKKIGRLY 520
D + + ER++V E V C E S E++ + ++ E LHK R+
Sbjct: 244 RDEVM-VMEERLEVKE--VVCSELQKKSKRLEDLLINEKKLVSQRRKELAKLHKSYSRVR 300
Query: 521 LVSDILHNC 529
+D L +C
Sbjct: 301 ECTDNLKDC 309
>UNIPROTKB|G3V5Z6 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
Length = 189
Score = 116 (45.9 bits), Expect = 0.00021, P = 0.00021
Identities = 28/84 (33%), Positives = 46/84 (54%)
Query: 190 SGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMN 249
+G P LY+G+L+ ITE L IF +G + +I +M D + R + GF+ F +
Sbjct: 9 NGGPM--RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLM---KDSDTGRSKGYGFITFSD 63
Query: 250 RKDGERALKYLNGKDVQSYEMKLG 273
+ RAL+ LNG ++ M++G
Sbjct: 64 SECARRALEQLNGFELAGRPMRVG 87
>UNIPROTKB|F1MY46 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:DAAA02028045 OMA:VTERLDG
TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089 IPI:IPI00693162
UniGene:Bt.91499 Ensembl:ENSBTAT00000023525 Uniprot:F1MY46
Length = 463
Score = 125 (49.1 bits), Expect = 0.00022, P = 0.00022
Identities = 35/108 (32%), Positives = 54/108 (50%)
Query: 166 VYSEEAEPPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASI 225
V + +AE A+ KGS G P LY+G+L+ ITE L I +G + +I
Sbjct: 253 VQASQAEKNRLAAMANNLQKGS---GGP--VRLYVGSLHCNITEDMLRGILEPFGKIDNI 307
Query: 226 KIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273
+M D E R + GF+ F + + RAL+ LNG ++ M++G
Sbjct: 308 VLM---KDSETGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRIG 352
>UNIPROTKB|B4DUA9 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
Length = 181
Score = 113 (44.8 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 27/89 (30%), Positives = 47/89 (52%)
Query: 186 GSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFV 245
GS + DP T L + L+ TE+ L E+F RYGPL+ + +++ D+ R R FV
Sbjct: 9 GSRANPDP-NTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVY---DQRTGRSRGFAFV 64
Query: 246 AFMNRKDGERALKYLNGKDVQSYEMKLGW 274
F D + A++ NG ++ +++ +
Sbjct: 65 YFERIDDSKEAMERANGMELDGRRIRVDY 93
Score = 38 (18.4 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 385 YRFLFENQSPAHIYYRWKMYSILQGDQPKEW 415
Y + + +SP+ Y R++ S + P+ +
Sbjct: 151 YDYRYRRRSPSPYYSRYRSRSRSRSYSPRRY 181
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 127 (49.8 bits), Expect = 0.00022, P = 0.00022
Identities = 31/79 (39%), Positives = 46/79 (58%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNC-GFVAFMNRKDGE 254
TN+Y+ NL+ T+ +L FG+YG ++S +M R + K+R C GFV F N +D
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVM--RDGDGKSR---CFGFVNFENPEDAA 279
Query: 255 RALKYLNGKDVQSYEMKLG 273
RA++ LNGK E +G
Sbjct: 280 RAVEALNGKKFDDKEWYVG 298
Score = 126 (49.4 bits), Expect = 0.00028, P = 0.00028
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 185 KGSFDSGDPCT-TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCG 243
+GS D G+ NLY+ NL+ +T+++L E+F +G + S K+M R ++G G
Sbjct: 316 QGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVM--RDPSGTSKGS--G 371
Query: 244 FVAFMNRKDGERALKYLNGKDV 265
FVAF + R L +NGK V
Sbjct: 372 FVAFSAASEASRVLNEMNGKMV 393
>FB|FBgn0016978 [details] [associations]
symbol:snRNP-U1-70K "small ribonucleoprotein particle U1
subunit 70K" species:7227 "Drosophila melanogaster" [GO:0005692
"U11 snRNP" evidence=ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0030619 "U1 snRNA
binding" evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;NAS] [GO:0003729 "mRNA binding" evidence=ISS;IDA]
[GO:0005685 "U1 snRNP" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IPI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] [GO:0005515
"protein binding" evidence=IPI] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007052 EMBL:AE014134 GO:GO:0022008
GO:GO:0000166 GO:GO:0016607 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0000381 GO:GO:0005685 KO:K11093 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 GeneTree:ENSGT00530000063750
EMBL:M31162 EMBL:AY061501 EMBL:AY089622 PIR:A36311
RefSeq:NP_477205.1 UniGene:Dm.4728 PDB:2BN5 PDBsum:2BN5
ProteinModelPortal:P17133 SMR:P17133 DIP:DIP-19840N
MINT:MINT-1583111 STRING:P17133 PaxDb:P17133 PRIDE:P17133
EnsemblMetazoa:FBtr0079355 EnsemblMetazoa:FBtr0331374
EnsemblMetazoa:FBtr0331375 GeneID:33982 KEGG:dme:Dmel_CG8749
CTD:33982 FlyBase:FBgn0016978 InParanoid:P17133 OrthoDB:EOG466T39
PhylomeDB:P17133 EvolutionaryTrace:P17133 GenomeRNAi:33982
NextBio:786261 Bgee:P17133 GermOnline:CG8749 Uniprot:P17133
Length = 448
Score = 105 (42.0 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 32/119 (26%), Positives = 59/119 (49%)
Query: 150 QEEREERHKYKGVLKGVYSEEAEPPSAIAIYQE-ETKGSFDSGDPCTTNLYLGNLNPKIT 208
++ER ER + + + Y E E IA++ E K + + DP T L++ +N +
Sbjct: 62 RQERLERRRREKAEQVAYKLERE----IALWDPTEIKNATE--DPFRT-LFIARINYDTS 114
Query: 209 EQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQS 267
E +L F YGP+ I ++ D+E + + F+ + + +D A K+ +GK + S
Sbjct: 115 ESKLRREFEFYGPIKKIVLI---HDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDS 170
Score = 66 (28.3 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 21/75 (28%), Positives = 35/75 (46%)
Query: 730 SNSKGTGLTSSRRGDLSSERIQGDSGED-DSAAREEKKEANKSERSDRKKSPSPAAREEK 788
SN + + RR + R + D + D RE +++ ++ ER +KK RE
Sbjct: 277 SNGRSRSRSRERRKRRAGSRERYDEFDRRDRRDRERERDRDR-EREKKKKRSKSRERESS 335
Query: 789 KEAN--KSERSDRKK 801
+E K ER DR++
Sbjct: 336 RERRERKRERRDRER 350
Score = 60 (26.2 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 739 SSRRGDLSSERIQG---DSGEDDSAAREEKKE-ANKSERSDRKKSPSPAAREEKKEANKS 794
S R D +R +G +G S +RE +K A ER D RE +++ ++
Sbjct: 260 SRERRDRERDRGRGAVASNGRSRSRSRERRKRRAGSRERYDEFDRRDRRDRERERDRDRE 319
Query: 795 ERSDRKKSPS 804
+K+S S
Sbjct: 320 REKKKKRSKS 329
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 134 (52.2 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 38/108 (35%), Positives = 59/108 (54%)
Query: 166 VYSEEAEPPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASI 225
V + +AE A A+ KGS +G P LY+G+L+ ITE L IF +G + SI
Sbjct: 221 VQASQAEKNRAAALANNLQKGS--AG-PM--RLYVGSLHFNITEDMLRGIFEPFGRIDSI 275
Query: 226 KIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273
++M D E R + GF+ F + + ++AL+ LNG ++ MK+G
Sbjct: 276 QLMM---DSETGRSKGYGFITFSDAECAKKALEQLNGFELAGRPMKVG 320
Score = 37 (18.1 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 71 KAGTYDAGRRREDTSEKGKLYKPQSRLQEDKDSSASKAEEYAR 113
K+ + R+R + E+ K + + D+ S SK +R
Sbjct: 39 KSRSRSRDRKRSKSRERKKSHDRRRSRSRDRKRSRSKERRRSR 81
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 126 (49.4 bits), Expect = 0.00026, P = 0.00026
Identities = 23/78 (29%), Positives = 47/78 (60%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ N ++ ++ L +FGR+G + S+K+M +E + + GFV+F +D ++
Sbjct: 191 TNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVM----TDEGGKSKGFGFVSFERHEDAQK 246
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ +NGK++ + +G
Sbjct: 247 AVDEMNGKELNGKHIYVG 264
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 126 (49.4 bits), Expect = 0.00027, P = 0.00027
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ N + + +L +IF +YG SI++M +E + R GFV+F +D +R
Sbjct: 191 TNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVM----TDENGKSRGFGFVSFERHEDAQR 246
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ +NGK++ + +G
Sbjct: 247 AVDEMNGKEMNGKLIYVG 264
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 101 (40.6 bits), Expect = 0.00027, P = 0.00027
Identities = 17/67 (25%), Positives = 40/67 (59%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
++++G+L+P+IT + + F +G ++ +++ D + + GFV+F N+ D E A
Sbjct: 59 HVFVGDLSPEITTEDIKSAFAPFGKISDARVV---KDMATGKSKGYGFVSFYNKLDAENA 115
Query: 257 LKYLNGK 263
+ ++ G+
Sbjct: 116 IVHMGGQ 122
>UNIPROTKB|F5H606 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01013862 ProteinModelPortal:F5H606 SMR:F5H606
Ensembl:ENST00000542140 ArrayExpress:F5H606 Bgee:F5H606
Uniprot:F5H606
Length = 123
Score = 101 (40.6 bits), Expect = 0.00027, P = 0.00027
Identities = 30/103 (29%), Positives = 48/103 (46%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++GNL K+TE+ L E+F + GP+ +KI P+ + K + FV F + A+
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKI--PKDKDGKPK--QFAFVNFKHEVSVPYAM 67
Query: 258 KYLNGKDVQSYEMKLGWGKSVXXXXXXXXXXXK-MLELTVPPP 299
LNG + +K+ + V MLE+ PP
Sbjct: 68 NLLNGIKLYGRPIKIQFRSVVMPHKMSVCHIPNIMLEIQALPP 110
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 101 (40.6 bits), Expect = 0.00027, P = 0.00027
Identities = 22/70 (31%), Positives = 39/70 (55%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
+ LY+GNLN ++ + L F YG + S +++ R+ R R GFV + ++ +
Sbjct: 3 SKLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRAT---GRSRGFGFVEMGSDQEAQA 59
Query: 256 ALKYLNGKDV 265
A+ LNGK++
Sbjct: 60 AIAGLNGKEM 69
>UNIPROTKB|P52299 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8355 "Xenopus laevis" [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISS]
[GO:0000340 "RNA 7-methylguanosine cap binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005845
"mRNA cap binding complex" evidence=ISS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=ISS] [GO:0006408 "snRNA
export from nucleus" evidence=IDA] [GO:0006446 "regulation of
translational initiation" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046833 "positive regulation of RNA export from
nucleus" evidence=IDA] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845 GO:GO:0000340
GO:GO:0051028 GO:GO:0006370 GO:GO:0045292 HOVERGEN:HBG052581
PANTHER:PTHR18847 KO:K12883 CTD:22916 GO:GO:0046833 GO:GO:0006408
EMBL:BC072902 EMBL:X84788 PIR:I51602 RefSeq:NP_001167476.1
UniGene:Xl.43439 UniGene:Xl.81730 ProteinModelPortal:P52299
SMR:P52299 GeneID:100380998 KEGG:xla:100380998
Xenbase:XB-GENE-1005792 Uniprot:P52299
Length = 153
Score = 108 (43.1 bits), Expect = 0.00029, P = 0.00029
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGF--VAFMNRK 251
CT LY+GNL+ TE+Q+ E+F + G + I +M +K + CGF V + R
Sbjct: 37 CT--LYVGNLSFYTTEEQIHELFSKSGDVKRI-VM----GLDKVKKTACGFCFVEYYTRA 89
Query: 252 DGERALKYLNGKDVQSYEMKLGW 274
D E+A++++NG + ++ W
Sbjct: 90 DAEQAMRFINGTRLDDRIVRTDW 112
>UNIPROTKB|Q6DES0 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0006408 "snRNA
export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046833 "positive regulation of RNA export from
nucleus" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
HSSP:P52298 KO:K12883 CTD:22916 GO:GO:0046833 GO:GO:0006408
EMBL:CR761328 EMBL:BC077024 RefSeq:NP_001006879.1 UniGene:Str.170
ProteinModelPortal:Q6DES0 SMR:Q6DES0 STRING:Q6DES0 PRIDE:Q6DES0
GeneID:448671 KEGG:xtr:448671 Xenbase:XB-GENE-1005786
InParanoid:Q6DES0 Bgee:Q6DES0 Uniprot:Q6DES0
Length = 153
Score = 108 (43.1 bits), Expect = 0.00029, P = 0.00029
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 194 CTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGF--VAFMNRK 251
CT LY+GNL+ TE+Q+ E+F + G + I +M +K + CGF V + R
Sbjct: 37 CT--LYVGNLSFYTTEEQIHELFSKSGDVKKI-VM----GLDKIKKTACGFCFVEYYTRT 89
Query: 252 DGERALKYLNGKDVQSYEMKLGW 274
D E+A++++NG + ++ W
Sbjct: 90 DAEQAMRFINGTRLDDRIIRTDW 112
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 119 (46.9 bits), Expect = 0.00029, P = 0.00029
Identities = 28/113 (24%), Positives = 53/113 (46%)
Query: 163 LKGVYSEEAEP---PSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRY 219
L G +S + P A+ EE + D +Y+GN+ +T +QL ++ +
Sbjct: 41 LAGTFSRSSRTRFIPYAVT-ETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEH 99
Query: 220 GPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKL 272
G + +++M+ D+ R R GF + +D ++ LNG V+ E+K+
Sbjct: 100 GAVEKVQVMY---DKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKV 149
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 110 (43.8 bits), Expect = 0.00030, P = 0.00030
Identities = 23/81 (28%), Positives = 44/81 (54%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G LN E+ L + F +GP++ + ++ D E R R GF+ F N + A+
Sbjct: 8 LFVGGLNFNTDERALEDHFSSFGPISEVVVV---KDRETQRSRGFGFITFTNPEHASNAM 64
Query: 258 KYLNGKDVQSYEMKLGW-GKS 277
+ +NG+ + ++++ GKS
Sbjct: 65 RAMNGESLDGRQIRVDHAGKS 85
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 125 (49.1 bits), Expect = 0.00032, P = 0.00032
Identities = 25/78 (32%), Positives = 47/78 (60%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ NL + EQ L ++F ++G S+K+M R ++RG GF+ F ++ ++
Sbjct: 191 TNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVM--RDSNGQSRG--FGFINFEKHEEAQK 246
Query: 256 ALKYLNGKDVQSYEMKLG 273
A+ ++NGK+V + +G
Sbjct: 247 AVDHMNGKEVSGQLLYVG 264
>DICTYBASE|DDB_G0293562 [details] [associations]
symbol:DDB_G0293562 species:44689 "Dictyostelium
discoideum" [GO:0044351 "macropinocytosis" evidence=RCA]
dictyBase:DDB_G0293562 EMBL:AAFI02000218 eggNOG:NOG253936
InterPro:IPR014898 Pfam:PF08790 RefSeq:XP_629009.1
ProteinModelPortal:Q54BM0 EnsemblProtists:DDB0192009 GeneID:8629293
KEGG:ddi:DDB_G0293562 InParanoid:Q54BM0 OMA:ECASTVI
ProtClustDB:CLSZ2846558 Uniprot:Q54BM0
Length = 527
Score = 111 (44.1 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 39/133 (29%), Positives = 60/133 (45%)
Query: 673 SATMDGEDLDGVPMDKVKPARAATFIPSKWETVEENEDSAVTSSKWDDVEQSESKDDSNS 732
S++ + E D K A S E+ E+E S+ +SS +SES+D+
Sbjct: 266 SSSSESESEDEKKKKNNKKVEAKKEESSDSESESESESSSSSSSS---SSESESEDEKKK 322
Query: 733 KGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKKSPSPAAREEKKEAN 792
K + +++ S +S ED+ E K E K E SD + S SPA+ E K+E
Sbjct: 323 KDSKKVETKKEGSSDSESSSESVEDEKMDIE-KVEIKKEESSDSESS-SPASSESKEEEK 380
Query: 793 KS-ERSDRKKSPS 804
E+ + KK S
Sbjct: 381 MDIEKEETKKEES 393
Score = 103 (41.3 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 33/135 (24%), Positives = 66/135 (48%)
Query: 672 TSATMDGEDLDGVPMDKVKPARAATFIPSKWETVEENEDSAVTSSKWDDVEQSESK-DDS 730
+S + + E +D + ++ K +++ S E+ EE + S S D+ + E K ++S
Sbjct: 372 SSESKEEEKMD-IEKEETKKEESSS---SSSESEEEQKKSKKEDSDSDESSEDEKKKEES 427
Query: 731 NSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKKSPSPAAREE-KK 789
+S ++ D SE + + ++DS + +++SE D+KK S ++ E +K
Sbjct: 428 SSSSESEDEKKKEDSDSESSEDEKKKEDS----DSSSSSESEDEDKKKKDSSSSESESEK 483
Query: 790 EANKSERSDRKKSPS 804
E++ S S S S
Sbjct: 484 ESDSSSSSSESDSSS 498
Score = 66 (28.3 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 21/106 (19%), Positives = 49/106 (46%)
Query: 80 RREDTSEKGKLYKPQSRLQEDKDSSASKAEEYARLLGDKKTESQRLXXXXXXXXXXXSNL 139
++E++S+ + +S SS S++E+ + KK E+++ ++
Sbjct: 288 KKEESSDSESESESESSSSSSSSSSESESEDEKKKKDSKKVETKK--EGSSDSESSSESV 345
Query: 140 EMFKEELKMIQEEREERHKYKGVLKGVYSEEAEPPSAIAIYQEETK 185
E K +++ ++ ++EE + S E++ + I +EETK
Sbjct: 346 EDEKMDIEKVEIKKEESSDSES--SSPASSESKEEEKMDIEKEETK 389
Score = 60 (26.2 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 24/106 (22%), Positives = 45/106 (42%)
Query: 87 KGKLYKPQSRLQEDKDSSASKAEEYARLLGDKKTESQRLXXXXXXXXXXXSNLEMFKE-- 144
K + K +S D DSS S +E+ + +KK E++++ + E +
Sbjct: 144 KKPIKKVESSDSSDSDSSDSSSEDEKKKKDNKKVETKKVETKKVETKKVETKKEESSDSD 203
Query: 145 ----ELKMIQEEREERHKYKGVLK-GVYSEEAEPPSAIAIYQEETK 185
+ + E E+ K K K + EE+E S+ + ++E K
Sbjct: 204 SSDSDSSSSESESEDEKKKKDTKKVEIKKEESESESSESESEDENK 249
Score = 59 (25.8 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 24/113 (21%), Positives = 50/113 (44%)
Query: 80 RREDTSEKGKLYKPQSRLQEDKDSSASKAEEYARLLGDKKTESQRLXXXXXXXXXXXSNL 139
++E+ +K K+ S DSS+S++E+ + KK E +++ S+
Sbjct: 100 KKEEAKKKKKVESSDSSDSSSSDSSSSESEDEKK----KKKEIKKVETKKPIKKVESSDS 155
Query: 140 EMFKEELKMIQEEREERHKYKGVLKGVYSEEAEPPSAIAIYQEETKGSFDSGD 192
++E++++ K K V +++ E + +EE+ S DS D
Sbjct: 156 SDSDSSDSSSEDEKKKKDNKKVETKKVETKKVETKK-VETKKEESSDS-DSSD 206
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 119 (46.9 bits), Expect = 0.00033, P = 0.00033
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G L+ EQ L ++F +YG ++ + ++ D E R R GFV F N D + A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVV---KDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 258 KYLNGKDVQSYEMKL 272
+NGK V ++++
Sbjct: 65 MAMNGKSVDGRQIRV 79
>ZFIN|ZDB-GENE-031112-4 [details] [associations]
symbol:stm "starmaker" species:7955 "Danio rerio"
[GO:0009590 "detection of gravity" evidence=IMP] [GO:0043049 "otic
placode formation" evidence=IEP] [GO:0005576 "extracellular region"
evidence=IEA] ZFIN:ZDB-GENE-031112-4 GO:GO:0005576 eggNOG:NOG12793
GO:GO:0043049 GeneTree:ENSGT00550000074777 GO:GO:0009590
EMBL:AY372242 EMBL:CT574549 EMBL:BC129155 IPI:IPI00482673
RefSeq:NP_942112.2 UniGene:Dr.79127 Ensembl:ENSDART00000105174
GeneID:386700 KEGG:dre:386700 CTD:20882 HOVERGEN:HBG095247
OMA:RPGDHSQ NextBio:20813980 Bgee:A2VD23 Uniprot:A2VD23
Length = 613
Score = 125 (49.1 bits), Expect = 0.00033, P = 0.00033
Identities = 55/213 (25%), Positives = 88/213 (41%)
Query: 599 FLGLSDAVPLDANNGNEEDEDL-DGAPLSDVDGEDLDGVPLDGAALMKSLQRLPHSSSAP 657
F+G+S + P+ NNG + DE D + V P DG ++ + + AP
Sbjct: 14 FVGVSISAPVSNNNGTDNDESAADQRHIFTVQFNVGTPAPADGDSVTTDGKDSAEKNEAP 73
Query: 658 -DEDDIDGVPCTYN-ITSATMDGEDLDGVPMDKVKPARAATFIPSKWETVEENE---DSA 712
D D P T + SA G DG D+ + T E E + D
Sbjct: 74 GDSSDTTEKPGTTDGKDSAEQHGVTTDG--KDEAEQHGVTTDGQDSAEKRGEADGAPDKP 131
Query: 713 VTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSE-RIQGD-SGEDDSAAREEKKEANK 770
T + DD + + D S+ K TG + + S+E G+ +G+D + ++E +K
Sbjct: 132 DTQNGTDDTDSDQETDASHHK-TGDSDENKDKPSAEDHTDGNHAGKDSTDSKESPDTTDK 190
Query: 771 SERSDRKKSPS-PAAREEKKEANKSERSDRKKS 802
E D +P +A EK +++ S D KS
Sbjct: 191 PEGPDSDSAPDGDSASAEKTDSDHSPDEDANKS 223
>UNIPROTKB|E2QVA8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
Length = 440
Score = 123 (48.4 bits), Expect = 0.00033, P = 0.00033
Identities = 36/108 (33%), Positives = 56/108 (51%)
Query: 166 VYSEEAEPPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASI 225
V + +AE A+ KGS SG P LY+G+L+ ITE L IF +G + +I
Sbjct: 239 VQASQAEKNRLAAMANNLQKGS--SG-PM--RLYVGSLHFNITEDMLRGIFEPFGKIDNI 293
Query: 226 KIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273
+M D + R + GF+ F + + RAL+ LNG ++ M++G
Sbjct: 294 VLM---KDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVG 338
>WB|WBGene00018119 [details] [associations]
symbol:F36H12.3 species:6239 "Caenorhabditis elegans"
[GO:0005198 "structural molecule activity" evidence=IEA]
InterPro:IPR000535 Pfam:PF00635 PROSITE:PS50202 GO:GO:0005856
GO:GO:0005198 Gene3D:2.60.40.360 InterPro:IPR008962 SUPFAM:SSF49354
GeneTree:ENSGT00690000102102 EMBL:FO081309 PIR:T33457
RefSeq:NP_500767.1 UniGene:Cel.23403 ProteinModelPortal:O76719
SMR:O76719 STRING:O76719 EnsemblMetazoa:F36H12.3 GeneID:177307
KEGG:cel:CELE_F36H12.3 UCSC:F36H12.3 CTD:177307 WormBase:F36H12.3
InParanoid:O76719 OMA:EVTITRN NextBio:896198 Uniprot:O76719
Length = 335
Score = 121 (47.7 bits), Expect = 0.00033, P = 0.00033
Identities = 34/107 (31%), Positives = 49/107 (45%)
Query: 701 KWETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSA 760
K E +E E+ + K +D E+ + D K S + D E+ + + +D
Sbjct: 118 KDEKKDEKEEDKKSEDKKED-EKEKDDDKKEDKKDDKKSDNKDDKDDEKKE-EKKDDKEE 175
Query: 761 AREEKKEANKSERSDRKKSPSPAAREEKKEANKSERS-DRKK-SPSP 805
+EEKKE K E+ + KK EEKKE K E+ D KK P P
Sbjct: 176 KKEEKKEEKKEEKKEEKKEEKK--EEEKKEEKKEEKKEDEKKVEPKP 220
Score = 117 (46.2 bits), Expect = 0.00093, P = 0.00093
Identities = 32/105 (30%), Positives = 49/105 (46%)
Query: 701 KWETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSA 760
K E EE ED K ++ ++ + KD+ + + D SE + D E D
Sbjct: 90 KEEKKEEKEDKK--EEKKEEKKEDDKKDEKKDEKK---DEKEEDKKSEDKKEDEKEKDDD 144
Query: 761 AREEKKEA----NKSERSDRKKSPSPAAREEKKEANKSERSDRKK 801
+E+KK+ NK ++ D KK +EEKKE K E+ + KK
Sbjct: 145 KKEDKKDDKKSDNKDDKDDEKKEEKKDDKEEKKEEKKEEKKEEKK 189
Score = 117 (46.2 bits), Expect = 0.00093, P = 0.00093
Identities = 32/121 (26%), Positives = 55/121 (45%)
Query: 683 GVPMDKVKPARAATFIPSKWETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRR 742
G PA A SK + EE E S S K ++ ++ E K + + K G S ++
Sbjct: 29 GAVKSSTAPAPAPK-ADSKMKAPEEKEKSK-KSEKKEEPKKEEEKKEKSKKSEGKKSDKK 86
Query: 743 GDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKKSPSPAAR--EEKKEANKSERSDRK 800
+ E+ + + + E+K++ K E+ D KK + E+KKE K + D+K
Sbjct: 87 EEKKEEKKEEKEDKKEEKKEEKKEDDKKDEKKDEKKDEKEEDKKSEDKKEDEKEKDDDKK 146
Query: 801 K 801
+
Sbjct: 147 E 147
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 125 (49.1 bits), Expect = 0.00034, P = 0.00034
Identities = 23/78 (29%), Positives = 45/78 (57%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
TN+Y+ N + +++L E+F +YG S+K+M + + + GFV+F +D +
Sbjct: 191 TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVM----TDPTGKSKGFGFVSFEKHEDANK 246
Query: 256 ALKYLNGKDVQSYEMKLG 273
A++ +NGKD+ + +G
Sbjct: 247 AVEEMNGKDINGKMVFVG 264
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 100 (40.3 bits), Expect = 0.00035, P = 0.00035
Identities = 19/72 (26%), Positives = 41/72 (56%)
Query: 201 GNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYL 260
GN+ + TE+QL +IF GP+ S ++++ D E + + GF + +++ A++ L
Sbjct: 2 GNIPYEATEEQLKDIFSEVGPVVSFRLVY---DRETGKPKGYGFCEYQDQETALSAMRNL 58
Query: 261 NGKDVQSYEMKL 272
NG++ +++
Sbjct: 59 NGREFSGRALRV 70
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 100 (40.3 bits), Expect = 0.00035, P = 0.00035
Identities = 19/75 (25%), Positives = 40/75 (53%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
+Y+G+L+ +T +L FG+YG + K++ D E R + F+ + + + A+
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIEEAKLIM---DRETGRSKGFAFITYGTQDAAQEAV 76
Query: 258 KYLNGKDVQSYEMKL 272
NG D+Q ++++
Sbjct: 77 SKANGIDLQGRKIRV 91
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 100 (40.3 bits), Expect = 0.00035, P = 0.00035
Identities = 19/75 (25%), Positives = 40/75 (53%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
+Y+G+L+ +T +L FG+YG + K++ D E R + F+ + + + A+
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIEEAKLIM---DRETGRSKGFAFITYGTQDAAQEAV 76
Query: 258 KYLNGKDVQSYEMKL 272
NG D+Q ++++
Sbjct: 77 SKANGIDLQGRKIRV 91
>RGD|1311477 [details] [associations]
symbol:Sf3a1 "splicing factor 3a, subunit 1" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005684 "U2-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000061
InterPro:IPR000626 Pfam:PF00240 Pfam:PF01805 PROSITE:PS50128
SMART:SM00213 SMART:SM00648 RGD:1311477 GO:GO:0003723
InterPro:IPR019955 PROSITE:PS50053 GO:GO:0000398 GO:GO:0071013
SUPFAM:SSF109905 GO:GO:0005684 EMBL:CH473963
GeneTree:ENSGT00570000079144 InterPro:IPR022030 Pfam:PF12230
KO:K12825 CTD:10291 OMA:GMPPAKQ OrthoDB:EOG4N5VWN IPI:IPI00215030
RefSeq:NP_001100705.1 UniGene:Rn.114913 Ensembl:ENSRNOT00000008355
GeneID:305479 KEGG:rno:305479 UCSC:RGD:1311477 NextBio:654684
Uniprot:D3ZQM0
Length = 791
Score = 126 (49.4 bits), Expect = 0.00036, P = 0.00036
Identities = 29/88 (32%), Positives = 43/88 (48%)
Query: 322 PGEPLTREDLDRLDQILNQAYVKVVVPTDRTLLMLIHRMVEFVVREGPMFEAMIMNKEIS 381
P +P E + D ++ V ++ P + ++ + FV R GP FEA I EI+
Sbjct: 19 PKQPNEEEASSKEDSTPSKPVVGIIYPPPE-VRNIVDKTASFVARNGPEFEARIRQNEIN 77
Query: 382 NPLYRFLFENQSPAHIYYRWKMYSILQG 409
NP + FL N P H YYR K+ +G
Sbjct: 78 NPKFNFLNPND-PYHAYYRHKVSEFKEG 104
>UNIPROTKB|B4DQI6 [details] [associations]
symbol:TRA2A "cDNA FLJ50614, highly similar to
Transformer-2 protein homolog" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
Uniprot:B4DQI6
Length = 180
Score = 113 (44.8 bits), Expect = 0.00037, P = 0.00037
Identities = 27/89 (30%), Positives = 47/89 (52%)
Query: 186 GSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFV 245
GS + DP T L + L+ TE+ L E+F RYGPL+ + +++ D+ R R FV
Sbjct: 9 GSRANPDP-NTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVY---DQRTGRSRGFAFV 64
Query: 246 AFMNRKDGERALKYLNGKDVQSYEMKLGW 274
F D + A++ NG ++ +++ +
Sbjct: 65 YFERIDDSKEAMERANGMELDGRRIRVDY 93
>UNIPROTKB|H0YJJ3 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23 Ensembl:ENST00000553884
Uniprot:H0YJJ3
Length = 214
Score = 116 (45.9 bits), Expect = 0.00038, P = 0.00038
Identities = 28/84 (33%), Positives = 46/84 (54%)
Query: 190 SGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMN 249
+G P LY+G+L+ ITE L IF +G + +I +M D + R + GF+ F +
Sbjct: 34 NGGPM--RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLM---KDSDTGRSKGYGFITFSD 88
Query: 250 RKDGERALKYLNGKDVQSYEMKLG 273
+ RAL+ LNG ++ M++G
Sbjct: 89 SECARRALEQLNGFELAGRPMRVG 112
>GENEDB_PFALCIPARUM|PF14_0194 [details] [associations]
symbol:PF14_0194 "spliceosome-associated
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AE014187
HSSP:P11940 KO:K12831 RefSeq:XP_001348367.1
ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0 MINT:MINT-1577513
EnsemblProtists:PF14_0194:mRNA GeneID:811775 KEGG:pfa:PF14_0194
EuPathDB:PlasmoDB:PF3D7_1420000 ProtClustDB:CLSZ2501032
Uniprot:Q8ILQ0
Length = 484
Score = 123 (48.4 bits), Expect = 0.00038, P = 0.00038
Identities = 24/92 (26%), Positives = 58/92 (63%)
Query: 183 ETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNC 242
+ K SFD G NL++GNL+ ++ E+ L +IF +G + ++K+M R++++ ++G
Sbjct: 98 QDKRSFDVG----ANLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVM--RNEDDTSKGH-- 149
Query: 243 GFVAFMNRKDGERALKYLNGKDVQSYEMKLGW 274
GF+++ N + + A++ +N + + + ++ + +
Sbjct: 150 GFISYDNFESSDLAIENMNNQFICNKKVHISY 181
>UNIPROTKB|Q8ILQ0 [details] [associations]
symbol:PF14_0194 "Spliceosome-associated protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AE014187 HSSP:P11940 KO:K12831
RefSeq:XP_001348367.1 ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0
MINT:MINT-1577513 EnsemblProtists:PF14_0194:mRNA GeneID:811775
KEGG:pfa:PF14_0194 EuPathDB:PlasmoDB:PF3D7_1420000
ProtClustDB:CLSZ2501032 Uniprot:Q8ILQ0
Length = 484
Score = 123 (48.4 bits), Expect = 0.00038, P = 0.00038
Identities = 24/92 (26%), Positives = 58/92 (63%)
Query: 183 ETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNC 242
+ K SFD G NL++GNL+ ++ E+ L +IF +G + ++K+M R++++ ++G
Sbjct: 98 QDKRSFDVG----ANLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVM--RNEDDTSKGH-- 149
Query: 243 GFVAFMNRKDGERALKYLNGKDVQSYEMKLGW 274
GF+++ N + + A++ +N + + + ++ + +
Sbjct: 150 GFISYDNFESSDLAIENMNNQFICNKKVHISY 181
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 108 (43.1 bits), Expect = 0.00039, P = 0.00039
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G LN EQ L + F +GP++ + ++ D E R R GF+ F N + +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVV---KDRETQRSRGFGFITFTNPEHASDVM 64
Query: 258 KYLNGKDVQSYEMKLGW-GKS 277
+ +NG+ + ++++ GKS
Sbjct: 65 RAMNGESLDGRQIRVDHAGKS 85
>UNIPROTKB|Q9NZW4 [details] [associations]
symbol:DSPP "Dentin sialophosphoprotein" species:9606 "Homo
sapiens" [GO:0031214 "biomineral tissue development" evidence=IEA]
[GO:0071460 "cellular response to cell-matrix adhesion"
evidence=IEA] [GO:0005578 "proteinaceous extracellular matrix"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=TAS] [GO:0005201 "extracellular matrix structural
constituent" evidence=TAS] [GO:0005509 "calcium ion binding"
evidence=TAS] [GO:0005518 "collagen binding" evidence=TAS]
[GO:0007275 "multicellular organismal development" evidence=TAS]
[GO:0001503 "ossification" evidence=TAS] GO:GO:0005578
GO:GO:0005509 GO:GO:0001501 GO:GO:0005518 eggNOG:NOG12793
GO:GO:0031214 GO:GO:0001503 GO:GO:0005201 EMBL:AF163151
EMBL:AC093895 EMBL:AF094508 IPI:IPI00872967 RefSeq:NP_055023.2
UniGene:Hs.678914 ProteinModelPortal:Q9NZW4 STRING:Q9NZW4
PhosphoSite:Q9NZW4 DMDM:215273974 PaxDb:Q9NZW4 PRIDE:Q9NZW4
Ensembl:ENST00000282478 Ensembl:ENST00000399271 GeneID:1834
KEGG:hsa:1834 UCSC:uc003hqu.3 CTD:1834 GeneCards:GC04P088529
HGNC:HGNC:3054 HPA:HPA036230 MIM:125420 MIM:125485 MIM:125490
MIM:125500 MIM:605594 neXtProt:NX_Q9NZW4 Orphanet:1653
Orphanet:166260 Orphanet:166265 PharmGKB:PA27507 HOVERGEN:HBG098252
OMA:ERESKVQ OrthoDB:EOG41RPVG GenomeRNAi:1834 NextBio:7491
PMAP-CutDB:A8MUI0 ArrayExpress:Q9NZW4 Bgee:Q9NZW4 CleanEx:HS_DSPP
Genevestigator:Q9NZW4 GermOnline:ENSG00000152591 GO:GO:0071460
Uniprot:Q9NZW4
Length = 1301
Score = 128 (50.1 bits), Expect = 0.00040, P = 0.00040
Identities = 51/202 (25%), Positives = 89/202 (44%)
Query: 609 DANNGNEEDEDLDG----APLSDVDGEDLDGVPLDGAALMKSLQRLPHSSSAPDEDDIDG 664
+ NNGN++++ D + SD D D D + S +SSS D D D
Sbjct: 529 NGNNGNDDNDKSDSGKGKSDSSDSDSSDSSNSS-DSSDSSDSDSSDSNSSSDSDSSDSDS 587
Query: 665 VPCTYNITSATMDGEDLDGVPMDKVKPARAATFIPSKWETVEENEDSAVTSSKWD--DVE 722
+ + +S + + D D + ++ SK ++ + DS+ + SK D D
Sbjct: 588 SDSSDSDSSDSSNSSDSSD-SSDSSDSSDSSDSSDSKSDSSKSESDSSDSDSKSDSSDSN 646
Query: 723 QSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKKSPSP 782
S+S D+S+S + SS D SS+ DS D S++ + ++ S+ SD S
Sbjct: 647 SSDSSDNSDSSDSS-NSSNSSD-SSD--SSDSS-DSSSSSDSSNSSDSSDSSDSSNSSES 701
Query: 783 AAREEKKEANKSERSDRKKSPS 804
+ + +++ S+ SD S S
Sbjct: 702 SDSSDSSDSDSSDSSDSSNSNS 723
>TAIR|locus:2128091 [details] [associations]
symbol:AT4G31200 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0048046 "apoplast" evidence=IDA] InterPro:IPR000061
Pfam:PF01805 PROSITE:PS50128 SMART:SM00648 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0048046 GO:GO:0003723 GO:GO:0006396
EMBL:AL161578 InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391 EMBL:AL021633
EMBL:BT010740 EMBL:AK229583 IPI:IPI00537400 PIR:T04487
RefSeq:NP_194848.1 RefSeq:NP_849479.1 RefSeq:NP_974650.1
UniGene:At.31766 ProteinModelPortal:O49570 SMR:O49570 PaxDb:O49570
PRIDE:O49570 EnsemblPlants:AT4G31200.1 EnsemblPlants:AT4G31200.2
EnsemblPlants:AT4G31200.3 GeneID:829247 KEGG:ath:AT4G31200
TAIR:At4g31200 eggNOG:NOG240237 HOGENOM:HOG000242029
InParanoid:O49570 OMA:VYDQETI PhylomeDB:O49570
ProtClustDB:CLSN2685840 ArrayExpress:O49570 Genevestigator:O49570
Uniprot:O49570
Length = 650
Score = 116 (45.9 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 348 PTDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKMY 404
P D L I ++VE+ V+ GP FEAM+ +++ NP Y FLF + H YYR+K +
Sbjct: 121 PADPELQKRIDKLVEYSVKNGPEFEAMMRDRQKDNPDYAFLFGGEG--HGYYRYKHF 175
Score = 56 (24.8 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 30/166 (18%), Positives = 64/166 (38%)
Query: 431 PPPMNLFTQGMPDELVEEEVESKTKGSLSNSQRHRLEDFLRNLTPERVKVAEAMVFCMEH 490
P P PD G L L L NL + + A ++ M+
Sbjct: 240 PQPHPFAPHARPDFDQSTHAFRGLSGPLPADVAMELNGVLGNLNGTKESIKSAKIWFMQR 299
Query: 491 SDAAEEICECIMESLSNESTALHKKIGRLYLVSDILHNCGIKISNASFYRRGFESRLFQI 550
S A + E + + + + +++ +YL +DIL + + +N + E+ F+
Sbjct: 300 SPFAPALAEALRDRVFAMDDS-DRQMHIVYLANDILFDSLQRRTNLHEFDN--EALAFRP 356
Query: 551 FTEMHITYVNLESRLKAEGLRTRVMQVFRAWEDWAVYPKDYLIKLQ 596
+ + + K E ++R+ ++ + W V+ +D + L+
Sbjct: 357 ILGSMLGRIYHFPQNKEEN-QSRLEKILQFWASKEVFDQDTISSLE 401
>UNIPROTKB|Q86U06 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 eggNOG:COG0724 EMBL:AL135998
EMBL:AF087905 EMBL:AF275678 EMBL:AK001344 EMBL:AL834198
EMBL:BX161440 EMBL:BC002566 EMBL:BC024208 IPI:IPI00168431
IPI:IPI00376960 IPI:IPI00376962 IPI:IPI00376963 IPI:IPI00386141
RefSeq:NP_001070819.1 RefSeq:NP_001070820.1 RefSeq:NP_060577.3
UniGene:Hs.4997 PDB:2CQ4 PDB:2DNZ PDBsum:2CQ4 PDBsum:2DNZ
ProteinModelPortal:Q86U06 SMR:Q86U06 IntAct:Q86U06
MINT:MINT-1382566 STRING:Q86U06 PhosphoSite:Q86U06 DMDM:34925229
PaxDb:Q86U06 PRIDE:Q86U06 DNASU:55147 Ensembl:ENST00000346528
Ensembl:ENST00000359890 Ensembl:ENST00000399922 GeneID:55147
KEGG:hsa:55147 UCSC:uc001whg.3 UCSC:uc001whh.3 UCSC:uc001whi.3
UCSC:uc001whk.1 CTD:55147 GeneCards:GC14M023369 HGNC:HGNC:20155
HPA:HPA004144 neXtProt:NX_Q86U06 PharmGKB:PA134974852
HOVERGEN:HBG057646 InParanoid:Q86U06 OMA:VTERLDG PhylomeDB:Q86U06
ChiTaRS:RBM23 EvolutionaryTrace:Q86U06 GenomeRNAi:55147
NextBio:58862 ArrayExpress:Q86U06 Bgee:Q86U06 CleanEx:HS_RBM23
Genevestigator:Q86U06 GermOnline:ENSG00000100461 TIGRFAMs:TIGR01622
Uniprot:Q86U06
Length = 439
Score = 122 (48.0 bits), Expect = 0.00042, P = 0.00042
Identities = 34/108 (31%), Positives = 55/108 (50%)
Query: 166 VYSEEAEPPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASI 225
V + +AE A+ KG+ G P LY+G+L+ ITE L IF +G + +I
Sbjct: 238 VQASQAEKNRLAAMANNLQKGN---GGPM--RLYVGSLHFNITEDMLRGIFEPFGKIDNI 292
Query: 226 KIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273
+M D + R + GF+ F + + RAL+ LNG ++ M++G
Sbjct: 293 VLM---KDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVG 337
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 113 (44.8 bits), Expect = 0.00044, P = 0.00044
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
L++G L+ TEQ L + F +YG + ++ + R E R R GFV F N D + AL
Sbjct: 7 LFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNR---ETNRSRGFGFVTFENPDDAKDAL 63
Query: 258 KYLNGKDVQSYEMKL 272
+ +NGK V +++
Sbjct: 64 EGMNGKSVDGRTIRV 78
>UNIPROTKB|E5RHG7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00980706
ProteinModelPortal:E5RHG7 SMR:E5RHG7 Ensembl:ENST00000522720
ArrayExpress:E5RHG7 Bgee:E5RHG7 Uniprot:E5RHG7
Length = 75
Score = 99 (39.9 bits), Expect = 0.00044, P = 0.00044
Identities = 24/65 (36%), Positives = 34/65 (52%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
+LY+G+L+P +TE L E F GP+ SI++ D R +V F D ERA
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAERA 68
Query: 257 LKYLN 261
L +N
Sbjct: 69 LDTMN 73
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 99 (39.9 bits), Expect = 0.00044, P = 0.00044
Identities = 19/65 (29%), Positives = 38/65 (58%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
LY+G+++ + TE L +F G + S+ I+ +D E R + CG+V + ++ + A+
Sbjct: 5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHII---TDPETGRSKGCGYVRMLTEEEAKEAI 61
Query: 258 KYLNG 262
+ L+G
Sbjct: 62 ETLDG 66
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 99 (39.9 bits), Expect = 0.00044, P = 0.00044
Identities = 19/65 (29%), Positives = 38/65 (58%)
Query: 198 LYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERAL 257
LY+G+++ + TE L +F G + S+ I+ +D E R + CG+V + ++ + A+
Sbjct: 5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHII---TDPETGRSKGCGYVRMLTEEEAKEAI 61
Query: 258 KYLNG 262
+ L+G
Sbjct: 62 ETLDG 66
>ZFIN|ZDB-GENE-050327-97 [details] [associations]
symbol:rbm39b "RNA binding motif protein 39b"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
Length = 539
Score = 123 (48.4 bits), Expect = 0.00045, P = 0.00045
Identities = 35/108 (32%), Positives = 58/108 (53%)
Query: 166 VYSEEAEPPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASI 225
V + +AE A A+ +G +G P LY+G+L+ ITE L IF +G + I
Sbjct: 239 VQASQAEKNRAAAMASMLQRGG--AG-PM--RLYVGSLHFNITEDMLRGIFEPFGKIEGI 293
Query: 226 KIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLG 273
++M D E R + GF++F + + ++AL+ LNG ++ MK+G
Sbjct: 294 QLMM---DSETGRSKGYGFISFADAECAKKALEQLNGFELAGRPMKVG 338
>DICTYBASE|DDB_G0276189 [details] [associations]
symbol:DDB_G0276189 species:44689 "Dictyostelium
discoideum" [GO:0044351 "macropinocytosis" evidence=RCA]
dictyBase:DDB_G0276189 EMBL:AAFI02000014 InterPro:IPR013240
Pfam:PF08208 RefSeq:XP_643299.1 EnsemblProtists:DDB0203501
GeneID:8620345 KEGG:ddi:DDB_G0276189 eggNOG:NOG292646 OMA:GKELWLI
Uniprot:Q552C9
Length = 321
Score = 123 (48.4 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 32/109 (29%), Positives = 59/109 (54%)
Query: 700 SKWETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGE--- 756
+K E +E E+ K + +SES+D S SS++ SS++ + S E
Sbjct: 188 NKKENKKEKENKKEVK-KQESESESESEDKKKSSKNDKKSSKKDKKSSKKQESSSEEESS 246
Query: 757 DDSAAREEKK--EANKSERSDRKKSPSPAAREEKKEANKSERSDRKKSP 803
D+S++ EEKK ++ KS S ++++ +++ KK ++K E+SD + P
Sbjct: 247 DESSSEEEKKTKKSKKSSSSKKEETKKEESKKSKKSSSKKEKSDSESEP 295
Score = 39 (18.8 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 309 PASKDKHRIPKLRPGEPLTREDLDRLDQILNQAYVKVVVPTDRT 352
P K +H + K R P + L++L + +K+ PT T
Sbjct: 125 PKPKQQHDLLKGRYDPPGSSGFLEKLGKESKNKNIKINKPTKPT 168
>MGI|MGI:1914715 [details] [associations]
symbol:Sf3a1 "splicing factor 3a, subunit 1" species:10090
"Mus musculus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005684 "U2-type spliceosomal complex"
evidence=ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=ISO] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000061 InterPro:IPR000626 Pfam:PF00240
Pfam:PF01805 PROSITE:PS50128 SMART:SM00213 SMART:SM00648
MGI:MGI:1914715 GO:GO:0003723 InterPro:IPR019955 PROSITE:PS50053
GO:GO:0000398 GO:GO:0071013 EMBL:AL807825 SUPFAM:SSF109905
GO:GO:0005684 eggNOG:NOG300902 GeneTree:ENSGT00570000079144
InterPro:IPR022030 Pfam:PF12230 KO:K12825 HOGENOM:HOG000238941
CTD:10291 HOVERGEN:HBG059993 OMA:GMPPAKQ OrthoDB:EOG4N5VWN
ChiTaRS:SF3A1 EMBL:AK028829 EMBL:AK029095 EMBL:AK030223
EMBL:BC010727 EMBL:BC029753 IPI:IPI00408796 RefSeq:NP_080451.4
UniGene:Mm.156914 PDB:1WE7 PDBsum:1WE7 ProteinModelPortal:Q8K4Z5
SMR:Q8K4Z5 IntAct:Q8K4Z5 STRING:Q8K4Z5 PhosphoSite:Q8K4Z5
PaxDb:Q8K4Z5 PRIDE:Q8K4Z5 Ensembl:ENSMUST00000002198 GeneID:67465
KEGG:mmu:67465 UCSC:uc007hup.2 InParanoid:Q8K4Z5
EvolutionaryTrace:Q8K4Z5 NextBio:324654 Bgee:Q8K4Z5
CleanEx:MM_SF3A1 Genevestigator:Q8K4Z5
GermOnline:ENSMUSG00000002129 Uniprot:Q8K4Z5
Length = 791
Score = 125 (49.1 bits), Expect = 0.00046, P = 0.00046
Identities = 28/86 (32%), Positives = 43/86 (50%)
Query: 324 EPLTREDLDRLDQILNQAYVKVVVPTDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNP 383
+P+ E + D ++ V ++ P + ++ + FV R GP FEA I EI+NP
Sbjct: 21 QPIEEEASSKEDPTPSKPVVGIIYPPPE-VRNIVDKTASFVARNGPEFEARIRQNEINNP 79
Query: 384 LYRFLFENQSPAHIYYRWKMYSILQG 409
+ FL N P H YYR K+ +G
Sbjct: 80 KFNFLNPND-PYHAYYRHKVSEFKEG 104
>UNIPROTKB|F1M3H5 [details] [associations]
symbol:F1M3H5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00564869
Ensembl:ENSRNOT00000037606 OMA:SQCSSPC Uniprot:F1M3H5
Length = 272
Score = 102 (41.0 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 190 SGDPCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMN 249
S P T +++G L +T+ +MEIF Y + I + R ++G +V F N
Sbjct: 124 SPSPKPTKVHIGRLTRNVTKDHIMEIFSTYREIKMIDMPVERIHPHLSKGY--AYVEFEN 181
Query: 250 RKDGERALKYLNGKDVQSYEM 270
+ E+ALK+++G + E+
Sbjct: 182 PDEAEKALKHMDGGQIDGQEI 202
Score = 59 (25.8 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 150 QEEREERHKYKGVLKGVYSEEAEPPSAIAIYQEETKGSFDSGDPCTT 196
+EE EE + +G KG S A+ S ++E+ K + S PC++
Sbjct: 10 EEEEEEGRRRRGEKKGEVSHGADHQS----FREKAKKPYRSKSPCSS 52
>ZFIN|ZDB-GENE-040426-960 [details] [associations]
symbol:rbm28 "RNA binding motif protein 28"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-960 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000124666 HOVERGEN:HBG073213 EMBL:BX901876
IPI:IPI00499330 UniGene:Dr.78227 ProteinModelPortal:Q1LV83
SMR:Q1LV83 STRING:Q1LV83 ArrayExpress:Q1LV83 Uniprot:Q1LV83
Length = 865
Score = 97 (39.2 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 196 TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGER 255
+ L + NL+ K E L +IF +G + KI P + K RG FV F + +
Sbjct: 236 SRLIIRNLSFKCEEDDLKQIFSEFGTVLEAKI--PLKPDGKKRG--FAFVLFKRMPEAGK 291
Query: 256 ALKYLNGKDVQSYEMKLGW 274
AL +NGK ++ ++ + W
Sbjct: 292 ALTAMNGKKIKDRQVAVDW 310
Score = 78 (32.5 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 25/101 (24%), Positives = 43/101 (42%)
Query: 698 IPSKWETVEENEDSAVTS-SKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGE 756
+ K E +EN+D+ S SK D + E DD + +G S D +E Q D +
Sbjct: 334 VTGKVEEADENKDAKKKSISKKSDSSEDEDDDDDDDDSSG---SEMDDAENESQQSDDED 390
Query: 757 DDSAAREEKKEANKSERSDRKKSPSPAAREEKKEANKSERS 797
DD ++ + + + D + E K +K +R+
Sbjct: 391 DDDDDDDDDDDDDNDDDDDDDDDDDDDS--EGKTPSKKKRN 429
>UNIPROTKB|G3MZB1 [details] [associations]
symbol:G3MZB1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071460 "cellular response to cell-matrix adhesion"
evidence=IEA] GeneTree:ENSGT00550000074777 GO:GO:0071460
EMBL:DAAA02018360 OMA:NSCGNEG EMBL:DAAA02018358 EMBL:DAAA02018359
Ensembl:ENSBTAT00000063098 Uniprot:G3MZB1
Length = 682
Score = 124 (48.7 bits), Expect = 0.00048, P = 0.00048
Identities = 49/225 (21%), Positives = 90/225 (40%)
Query: 582 EDWAVYPKDYLIKLQNVFLGLSDAVPL--DANNGNEEDEDLDGAPLSDVDGEDLDGVPLD 639
EDW +P++ + + + P D++N ++ D D + D D D
Sbjct: 405 EDWGNWPENRSLDSSTSETPVCENTPSCSDSSNSSDSDSKSDSDSSNSSDSSDSSDSKSD 464
Query: 640 GAALMKSLQRLPHSSSAPDEDDIDGVPCTYNITSATMDGEDLDGVPMDKVKPARAATFIP 699
+ S SS + D D + +S + D D D + ++
Sbjct: 465 SSDSSDSSDSKSDSSDSSDSDSKSD-----SDSSDSSDSSDSDSSDSSDSSDSDSSDSSD 519
Query: 700 SKWETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLT-SSRRGDLSSERIQGDSGEDD 758
S ++ ++ DS+ SS D S++K DS+S + + SS D S DS + D
Sbjct: 520 SDSKSDSDSSDSS-NSSDSSDSSDSDTKSDSDSSDSSDSDSSDSSDSSDSSDSSDSSDSD 578
Query: 759 SAAREEKKEANKSERSDRKKSPSPAARE-EKKEANKSERSDRKKS 802
S+ + + S+ SD S S + + + +++ S+ SD S
Sbjct: 579 SSNSSDSDSKSDSDSSDSSDSDSSDSSDSDSSDSSDSDSSDSSDS 623
>UNIPROTKB|Q66II8 [details] [associations]
symbol:snrnp70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0043484 "regulation of RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0060218 GO:GO:0043484
GO:GO:0000398 eggNOG:COG0724 KO:K11093 InterPro:IPR022023
Pfam:PF12220 CTD:6625 GeneTree:ENSGT00530000063750
OrthoDB:EOG4CJVJ7 HOVERGEN:HBG012300 EMBL:CR760195 EMBL:BC081331
RefSeq:NP_001008126.1 UniGene:Str.26779 ProteinModelPortal:Q66II8
STRING:Q66II8 Ensembl:ENSXETT00000049555 GeneID:493488
KEGG:xtr:493488 Xenbase:XB-GENE-992818 InParanoid:Q66II8
OMA:RHDKYDR Bgee:Q66II8 Uniprot:Q66II8
Length = 471
Score = 89 (36.4 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 28/115 (24%), Positives = 54/115 (46%)
Query: 151 EEREERHKYKGVLKGVYSEEAEPPSAIAIYQEETKGSFDSGDPCTTNLYLGNLNPKITEQ 210
E REER + K K + + + + + I+ + GD T L++ +N TE
Sbjct: 61 ETREERMERKRREK-IERRQQDVENELKIWDPHNDQNAQ-GDAFKT-LFVARVNYDTTES 117
Query: 211 QLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERALKYLNGKDV 265
+L F YGP+ I +++ ++ + R F+ + + +D A K+ +GK +
Sbjct: 118 KLRREFEVYGPIKRIHMVY---NKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI 169
Score = 80 (33.2 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 21/69 (30%), Positives = 35/69 (50%)
Query: 734 GTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEANKSERSDRKKSPSPAAREEKKEANK 793
G GL +RRG + I+ SG DD++ +E+ + ER R++S E++ +
Sbjct: 193 GGGLGGTRRGG-ADVNIR-HSGRDDTSRYDERDRDRERERDRRERSRERDKERERRRSRS 250
Query: 794 SERSDRKKS 802
ER R +S
Sbjct: 251 RERRRRSRS 259
Score = 80 (33.2 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 24/93 (25%), Positives = 39/93 (41%)
Query: 710 DSAVTSSKWDDVEQSESKD-DSNSKGTGLTSSRRGDLSSERIQGDSGEDDSAAREEKKEA 768
D + S DD + + +D D + SR D ER + S E +R +KE
Sbjct: 205 DVNIRHSGRDDTSRYDERDRDRERERDRRERSRERDKERERRRSRSRERRRRSRSREKEE 264
Query: 769 NKSERSDRKKSPSPAAREEKKEANKSERSDRKK 801
K R + +++ KE +K + DRK+
Sbjct: 265 RKRSRERSRDKDKDKDKDKDKEKDKDKDRDRKR 297
>RGD|1305937 [details] [associations]
symbol:Rbm15b "RNA binding motif protein 15B" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA;ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0006913
"nucleocytoplasmic transport" evidence=ISO] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305937 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH473954 InterPro:IPR012921
Pfam:PF07744 GO:GO:0000381 PROSITE:PS50917 Gene3D:2.40.290.10
InterPro:IPR016194 SUPFAM:SSF100939 InterPro:IPR010912
OrthoDB:EOG42RD6Z GeneTree:ENSGT00530000063730 IPI:IPI00768794
Ensembl:ENSRNOT00000018995 UCSC:RGD:1305937 Uniprot:D3ZHD6
Length = 564
Score = 105 (42.0 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 24/83 (28%), Positives = 44/83 (53%)
Query: 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGE 254
T NL++GNL+ ++E +L F +YG + + I P + +G F+ F N
Sbjct: 9 TRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPA----RGQGGAYAFLKFQNLDMAH 64
Query: 255 RALKYLNGKDVQSYEMKLGWGKS 277
RA ++G+ + +K+G+GK+
Sbjct: 65 RAKVAMSGRVIGRNPIKIGYGKA 87
Score = 65 (27.9 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 26/114 (22%), Positives = 46/114 (40%)
Query: 698 IPSKWETVEENEDSAVTSSKWDDVEQSESKDDSNSKGTGLTSSRRGDLSSERIQGDSGED 757
I WE E + +++S + S ++ S +KG G S R D + ER + ++
Sbjct: 260 IAKPWE--ERRKRRSLSSDR-GRTTHSPYEERSRTKGGGQQSERGSDRTPERSRKENHSS 316
Query: 758 DSAAREEKKEANKSERSDRKKS------PSPAAREEKKEANKSERSDRKKSPSP 805
+ + S S ++S +P + KK +SER+ R P
Sbjct: 317 EGTKESGSNSLSNSRHSAEERSHHHHHHEAPDSSHGKK-TRESERNHRTTEAEP 369
>UNIPROTKB|F1S9W3 [details] [associations]
symbol:CHERP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051533 "positive regulation of NFAT protein import
into nucleus" evidence=IEA] [GO:0051209 "release of sequestered
calcium ion into cytosol" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0044325 "ion channel
binding" evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
GO:GO:0048471 GO:GO:0008285 GO:GO:0051209 GO:GO:0003723
GO:GO:0006396 GO:GO:0051533 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
GeneTree:ENSGT00600000084415 EMBL:CU929691
Ensembl:ENSSSCT00000015139 OMA:THELPTH Uniprot:F1S9W3
Length = 852
Score = 108 (43.1 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 348 PTDRTLLMLIHRMVEFVVREGPMFEAMIMNKEISNPLYRFLFENQSPAHIYYRWKM 403
P D+ L +I ++ +FV R GP FE M M K+ NP + FLF + + YY+ K+
Sbjct: 7 PDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGEF--YSYYKCKL 60
Score = 66 (28.3 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 26/110 (23%), Positives = 53/110 (48%)
Query: 498 CECIMESLSNESTA--LH--KKIGRLYLVSDILHNCGIKISNASFYRRGFESRLFQIFTE 553
CE + L N TA H ++ +YL++D+LH+C K + R + L ++
Sbjct: 190 CELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQRKQA------RELLAALQKVVVP 243
Query: 554 MHIT-YVNLESRLKAEGLRTRVMQVFRAWEDWAVYPKDYLIKLQNVFLGL 602
++ T ++ +E E + ++ ++ + WE + + +LQ+ LGL
Sbjct: 244 IYCTSFLAVE-----EDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGL 288
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 120 (47.3 bits), Expect = 0.00055, P = 0.00055
Identities = 32/126 (25%), Positives = 59/126 (46%)
Query: 180 YQEETKGSFDSGDPCT-TNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKAR 238
+ EE + D T TN+++ N+ I +++L E+F YGP S+K++ R K++
Sbjct: 182 FPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVI--RDASGKSK 239
Query: 239 GRNCGFVAFMNRKDGERALKYLNGKDVQSYEMKLGWGKSVXXXXXXXXXXXKMLELTVPP 298
G GFV + + ++A+ L+GK + + +G + + L L
Sbjct: 240 G--FGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKS 297
Query: 299 PPSGLP 304
P G+P
Sbjct: 298 RPPGVP 303
>UNIPROTKB|B1ANR1 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000217922 EMBL:AL845289 UniGene:Hs.169900 HGNC:HGNC:8557
ChiTaRS:PABPC4 IPI:IPI00644016 SMR:B1ANR1 STRING:B1ANR1
Ensembl:ENST00000451091 Uniprot:B1ANR1
Length = 129
Score = 98 (39.6 bits), Expect = 0.00057, P = 0.00057
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 197 NLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGERA 256
+LY+G+L+ +TE L E F GP+ SI++ D R +V F D ERA
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVC---RDMITRRSLGYAYVNFQQPADAERA 68
Query: 257 LKYLNGKDVQSYEMKLGWGK 276
L +N ++ +++ W +
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQ 88
>UNIPROTKB|I3LLT9 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00600000084414 EMBL:CU915556
Ensembl:ENSSSCT00000027399 OMA:SINGKEM Uniprot:I3LLT9
Length = 94
Score = 98 (39.6 bits), Expect = 0.00057, P = 0.00057
Identities = 18/73 (24%), Positives = 36/73 (49%)
Query: 193 PCTTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKD 252
P + +Y+ NL +T L IF +YG + + IM D++ + + F+ F+++
Sbjct: 7 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIM---KDKDTRKSKGVAFILFLDKDS 63
Query: 253 GERALKYLNGKDV 265
+ + +N K V
Sbjct: 64 AQNCTRAINNKQV 76
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 98 (39.6 bits), Expect = 0.00057, P = 0.00057
Identities = 21/71 (29%), Positives = 38/71 (53%)
Query: 195 TTNLYLGNLNPKITEQQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMNRKDGE 254
+ L++ L+ T+Q L ++F +G + +++ D E R + GF+ F + D
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLI---RDSETQRPKGFGFITFDSEDDAR 62
Query: 255 RALKYLNGKDV 265
+ALK L+GK V
Sbjct: 63 KALKSLDGKIV 73
WARNING: HSPs involving 40 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.130 0.374 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 806 755 0.00090 121 3 11 23 0.47 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 290
No. of states in DFA: 627 (67 KB)
Total size of DFA: 381 KB (2187 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 92.46u 0.13s 92.59t Elapsed: 00:00:25
Total cpu time: 92.52u 0.13s 92.65t Elapsed: 00:00:25
Start: Thu Aug 15 14:12:36 2013 End: Thu Aug 15 14:13:01 2013
WARNINGS ISSUED: 2